Query 033555
Match_columns 117
No_of_seqs 110 out of 727
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:21:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 1.3E-35 4.5E-40 208.2 12.2 116 2-117 11-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 1.7E-30 5.8E-35 181.9 11.2 108 4-117 14-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 1.5E-26 5.1E-31 160.1 12.1 92 5-101 14-106 (116)
4 3phx_B Ubiquitin-like protein 99.8 9.2E-20 3.2E-24 115.9 9.0 77 6-96 3-79 (79)
5 3plu_A Ubiquitin-like modifier 99.8 4.8E-20 1.6E-24 123.0 7.8 76 2-91 16-91 (93)
6 1wgd_A Homocysteine-responsive 99.8 2E-19 6.7E-24 118.2 9.4 85 2-98 2-90 (93)
7 4eew_A Large proline-rich prot 99.8 3.3E-19 1.1E-23 115.5 8.8 76 3-93 13-88 (88)
8 4dwf_A HLA-B-associated transc 99.8 6E-19 2E-23 114.7 9.5 79 5-98 3-81 (90)
9 1uh6_A Ubiquitin-like 5; beta- 99.8 2.5E-19 8.4E-24 121.0 7.4 76 3-92 24-99 (100)
10 2lxa_A Ubiquitin-like protein 99.8 2.5E-19 8.6E-24 117.9 6.9 76 8-96 2-80 (87)
11 3dbh_I NEDD8; cell cycle, acti 99.8 6.5E-19 2.2E-23 113.5 8.7 80 3-96 8-87 (88)
12 4fbj_B NEDD8; effector-HOST ta 99.8 5.9E-19 2E-23 115.1 8.5 78 8-99 1-78 (88)
13 2uyz_B Small ubiquitin-related 99.8 4.4E-19 1.5E-23 112.7 7.6 78 5-96 1-78 (79)
14 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.4E-18 4.7E-23 112.1 9.4 82 2-97 2-83 (87)
15 2kdb_A Homocysteine-responsive 99.8 6E-19 2.1E-23 118.5 7.8 76 4-91 20-99 (99)
16 2dzi_A Ubiquitin-like protein 99.8 1.1E-18 3.9E-23 110.6 8.6 80 2-95 2-81 (81)
17 3v6c_B Ubiquitin; structural g 99.8 1.3E-18 4.5E-23 113.7 9.1 77 4-94 14-90 (91)
18 1wy8_A NP95-like ring finger p 99.8 1.5E-18 5.3E-23 112.4 9.3 83 2-98 2-86 (89)
19 4a20_A Ubiquitin-like protein 99.8 2.3E-18 7.8E-23 115.5 9.7 79 4-95 16-97 (98)
20 2wyq_A HHR23A, UV excision rep 99.8 2.7E-18 9.1E-23 110.1 9.3 81 6-97 4-84 (85)
21 2kk8_A Uncharacterized protein 99.8 1.1E-18 3.8E-23 113.4 7.5 75 6-94 9-84 (84)
22 1wju_A NEDD8 ultimate buster-1 99.8 9.4E-19 3.2E-23 118.1 7.3 77 4-97 14-94 (100)
23 2faz_A Ubiquitin-like containi 99.8 2.7E-18 9.4E-23 108.6 8.5 74 7-94 2-77 (78)
24 4hcn_B Polyubiquitin, ubiquiti 99.8 2.7E-18 9.2E-23 114.0 8.7 78 5-96 20-97 (98)
25 1ndd_A NEDD8, protein (ubiquit 99.8 4.9E-18 1.7E-22 106.0 8.9 75 8-96 1-75 (76)
26 3m62_B UV excision repair prot 99.8 2.9E-18 9.9E-23 115.7 8.2 76 8-97 2-77 (106)
27 3n3k_B Ubiquitin; hydrolase, p 99.8 3.2E-18 1.1E-22 109.5 7.9 78 6-97 2-79 (85)
28 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 5.3E-18 1.8E-22 111.3 9.1 78 8-99 2-79 (96)
29 2hj8_A Interferon-induced 17 k 99.7 2.3E-18 7.7E-23 112.2 7.1 78 7-98 4-81 (88)
30 1wia_A Hypothetical ubiquitin- 99.7 1.3E-17 4.6E-22 109.7 10.9 80 2-98 2-82 (95)
31 1wyw_B Ubiquitin-like protein 99.7 2.6E-18 8.9E-23 114.1 7.4 77 6-96 20-96 (97)
32 3mtn_B UBA80, ubcep1, ubiquiti 99.7 5.8E-18 2E-22 108.1 8.7 78 6-97 2-79 (85)
33 2daf_A FLJ35834 protein; hypot 99.7 2.4E-18 8.1E-23 119.1 7.3 83 3-99 11-94 (118)
34 2kan_A Uncharacterized protein 99.7 6.3E-18 2.2E-22 111.9 8.9 77 6-97 14-91 (94)
35 1v2y_A 3300001G02RIK protein; 99.7 1.6E-18 5.5E-23 117.8 5.8 84 2-97 2-99 (105)
36 1uel_A HHR23B, UV excision rep 99.7 1.2E-17 4E-22 110.3 9.4 78 8-96 1-78 (95)
37 3a9j_A Ubiquitin; protein comp 99.7 1.3E-17 4.3E-22 104.1 9.1 75 8-96 1-75 (76)
38 1j8c_A Ubiquitin-like protein 99.7 1.2E-17 4.3E-22 116.0 9.7 84 1-99 26-109 (125)
39 4ajy_B Transcription elongatio 99.7 4.9E-18 1.7E-22 117.6 7.4 79 10-96 3-83 (118)
40 1sif_A Ubiquitin; hydrophobic 99.7 1E-17 3.4E-22 109.2 8.2 77 7-97 9-85 (88)
41 1yqb_A Ubiquilin 3; structural 99.7 8.1E-18 2.8E-22 112.6 7.9 83 1-98 16-98 (100)
42 2bwf_A Ubiquitin-like protein 99.7 1.7E-17 5.7E-22 104.3 8.7 73 7-94 4-76 (77)
43 3vdz_A Ubiquitin-40S ribosomal 99.7 2.5E-17 8.5E-22 111.9 9.3 77 6-96 34-110 (111)
44 1wx8_A Riken cDNA 4931431F19; 99.7 7.9E-18 2.7E-22 110.8 6.6 79 4-97 14-92 (96)
45 2fnj_B Transcription elongatio 99.7 7.9E-18 2.7E-22 116.6 6.6 79 10-96 3-83 (118)
46 2klc_A Ubiquilin-1; ubiquitin- 99.7 3.1E-17 1.1E-21 109.8 8.9 78 4-96 22-99 (101)
47 1wx7_A Ubiquilin 3; ubiquitin- 99.7 2.9E-17 1E-21 110.3 8.8 81 4-99 14-94 (106)
48 1ttn_A DC-UBP, dendritic cell- 99.7 2.6E-17 8.9E-22 110.8 8.3 77 6-96 22-98 (106)
49 2l7r_A Ubiquitin-like protein 99.7 1.8E-17 6.2E-22 109.2 7.0 75 6-96 18-92 (93)
50 1yx5_B Ubiquitin; proteasome, 99.7 6.1E-17 2.1E-21 107.0 9.4 77 8-98 1-77 (98)
51 3b1l_X E3 ubiquitin-protein li 99.5 1E-18 3.4E-23 110.0 0.0 75 8-96 1-75 (76)
52 3rt3_B Ubiquitin-like protein 99.7 6E-17 2.1E-21 114.8 9.2 78 6-97 80-157 (159)
53 3l0w_B Monoubiquitinated proli 99.7 6E-17 2.1E-21 117.6 9.3 80 8-101 1-80 (169)
54 1x1m_A Ubiquitin-like protein 99.7 6.1E-17 2.1E-21 109.3 8.0 80 6-97 11-103 (107)
55 3m63_B Ubiquitin domain-contai 99.7 3.2E-17 1.1E-21 109.9 6.4 74 6-94 27-100 (101)
56 1v5o_A 1700011N24RIK protein; 99.7 7.7E-17 2.6E-21 107.8 8.2 83 2-98 2-89 (102)
57 1we6_A Splicing factor, putati 99.7 8.6E-17 3E-21 108.9 8.2 78 6-97 26-107 (111)
58 2ojr_A Ubiquitin; lanthide-bin 99.7 1.8E-16 6.3E-21 107.4 9.5 77 6-96 34-110 (111)
59 1wgg_A Ubiquitin carboxyl-term 99.7 6.7E-17 2.3E-21 107.4 7.1 78 2-95 2-80 (96)
60 2kdi_A Ubiquitin, vacuolar pro 99.7 1.7E-16 5.7E-21 108.5 9.1 77 7-97 9-85 (114)
61 1wxv_A BAG-family molecular ch 99.7 1.8E-16 6.1E-21 103.7 8.4 81 2-97 2-88 (92)
62 1v5t_A 8430435I17RIK protein; 99.7 1.6E-16 5.3E-21 104.2 7.6 79 2-95 2-84 (90)
63 1we7_A SF3A1 protein; structur 99.7 9.9E-17 3.4E-21 109.4 6.9 80 5-98 23-112 (115)
64 3u30_A Ubiquitin, linear DI-ub 99.7 2.7E-16 9.2E-21 113.2 9.2 81 3-97 16-96 (172)
65 3q3f_A Ribonuclease/ubiquitin 99.7 2.1E-16 7.1E-21 117.1 8.1 77 7-97 105-181 (189)
66 4dbg_A Ranbp-type and C3HC4-ty 99.7 4.8E-16 1.7E-20 105.6 8.6 74 7-94 24-100 (105)
67 3u5e_m 60S ribosomal protein L 99.6 1.4E-17 4.9E-22 115.6 0.0 76 8-97 1-76 (128)
68 2kd0_A LRR repeats and ubiquit 99.6 8.1E-16 2.8E-20 99.9 8.0 69 12-94 16-84 (85)
69 3u30_A Ubiquitin, linear DI-ub 99.6 6E-16 2.1E-20 111.3 7.7 76 7-96 96-171 (172)
70 3rt3_B Ubiquitin-like protein 99.6 1.1E-15 3.9E-20 108.2 9.0 73 8-94 3-77 (159)
71 3u5c_f 40S ribosomal protein S 99.6 3.2E-17 1.1E-21 117.7 0.7 78 8-99 1-78 (152)
72 3b08_A Polyubiquitin-C, ubiqui 99.6 2.1E-15 7.2E-20 105.0 9.3 76 7-96 76-151 (152)
73 4b6w_A Tubulin-specific chaper 99.6 1.3E-15 4.6E-20 99.6 7.6 74 8-95 3-85 (86)
74 3b08_A Polyubiquitin-C, ubiqui 99.6 3.3E-15 1.1E-19 104.0 9.0 75 8-96 1-75 (152)
75 1v86_A DNA segment, CHR 7, way 99.6 8.4E-16 2.9E-20 101.7 5.5 76 4-95 14-89 (95)
76 1oqy_A HHR23A, UV excision rep 99.6 3.1E-15 1.1E-19 120.3 9.0 83 5-97 5-87 (368)
77 2dzj_A Synaptic glycoprotein S 99.6 5.6E-15 1.9E-19 96.9 7.9 69 5-79 8-80 (88)
78 2kj6_A Tubulin folding cofacto 99.6 6.5E-15 2.2E-19 98.5 7.3 77 2-92 9-94 (97)
79 2kjr_A CG11242; UBL, ubiquitin 99.6 8.4E-15 2.9E-19 97.5 7.7 73 5-91 13-93 (95)
80 1v6e_A Cytoskeleton-associated 99.5 2.1E-14 7.3E-19 94.7 8.4 77 2-92 2-86 (95)
81 2dzm_A FAS-associated factor 1 99.5 7.7E-15 2.6E-19 98.7 5.9 77 8-99 9-87 (100)
82 3ai5_A Yeast enhanced green fl 99.5 1.5E-14 5E-19 114.0 8.4 76 5-94 231-306 (307)
83 2xzm_9 RPS31E; ribosome, trans 99.5 5.1E-16 1.7E-20 115.1 0.0 71 8-97 1-71 (189)
84 1wf9_A NPL4 family protein; be 99.5 1.9E-14 6.4E-19 97.1 6.0 79 2-95 2-96 (107)
85 2io1_B Small ubiquitin-related 99.5 7.5E-14 2.6E-18 92.7 7.4 80 4-97 4-83 (94)
86 2io0_B Small ubiquitin-related 99.5 3.2E-13 1.1E-17 89.2 8.4 81 1-97 1-81 (91)
87 1t0y_A Tubulin folding cofacto 99.4 7.8E-13 2.7E-17 91.1 9.2 74 7-94 6-87 (122)
88 3shq_A UBLCP1; phosphatase, hy 99.4 4.5E-13 1.5E-17 105.8 5.8 76 6-96 4-82 (320)
89 2d07_B Ubiquitin-like protein 99.4 3E-12 1E-16 84.6 8.1 78 5-96 15-92 (93)
90 1wm3_A Ubiquitin-like protein 99.3 3.5E-12 1.2E-16 80.3 7.3 70 8-91 2-71 (72)
91 1wz0_A Ubiquitin-like protein 99.3 3.7E-12 1.3E-16 86.1 7.7 79 5-97 22-100 (104)
92 2kzr_A Ubiquitin thioesterase 99.3 1.9E-12 6.4E-17 83.8 5.5 71 8-93 1-77 (86)
93 3a4r_A Nfatc2-interacting prot 99.3 7.3E-12 2.5E-16 80.3 8.0 73 4-90 4-77 (79)
94 2k8h_A Small ubiquitin protein 99.3 9.4E-12 3.2E-16 84.9 6.2 78 6-97 25-102 (110)
95 2eke_C Ubiquitin-like protein 99.3 2E-11 6.7E-16 82.9 7.7 76 6-96 30-105 (106)
96 1wjn_A Tubulin-folding protein 99.0 2E-09 6.8E-14 70.8 9.5 74 6-93 8-92 (97)
97 3kyd_D Small ubiquitin-related 98.9 7.2E-09 2.5E-13 71.2 8.5 75 6-94 39-113 (115)
98 3pge_A SUMO-modified prolifera 98.8 1.7E-08 5.9E-13 75.1 7.5 81 5-100 27-107 (200)
99 3tix_A Ubiquitin-like protein 98.6 5.9E-08 2E-12 72.2 6.8 79 5-98 55-133 (207)
100 4efo_A Serine/threonine-protei 98.4 8.3E-07 2.8E-11 58.9 6.2 45 14-66 20-64 (94)
101 3v7o_A Minor nucleoprotein VP3 98.3 8.1E-08 2.8E-12 72.4 0.0 78 5-97 19-96 (227)
102 3uf8_A Ubiquitin-like protein 98.1 1.2E-05 4.1E-10 59.6 7.4 77 5-96 19-95 (209)
103 2jxx_A Nfatc2-interacting prot 98.0 2.4E-05 8.1E-10 52.0 7.8 69 4-80 22-91 (97)
104 3goe_A DNA repair protein RAD6 98.0 5.7E-05 2E-09 48.6 8.9 66 8-80 10-75 (82)
105 3ix6_A TS, tsase, thymidylate 98.0 1E-06 3.5E-11 70.6 0.0 81 5-100 19-99 (360)
106 2pjh_A Protein NPL4, nuclear p 98.0 4.6E-06 1.6E-10 53.3 3.1 65 7-80 4-73 (80)
107 3qx1_A FAS-associated factor 1 97.9 0.00015 5.3E-09 46.1 9.3 68 3-79 3-75 (84)
108 4da1_A Protein phosphatase 1K, 97.6 9E-06 3.1E-10 64.7 0.0 76 6-96 29-104 (389)
109 2l76_A Nfatc2-interacting prot 97.5 0.00047 1.6E-08 45.7 7.6 66 6-80 20-85 (95)
110 2dzk_A UBX domain-containing p 97.3 0.001 3.5E-08 44.5 7.7 68 3-78 9-81 (109)
111 1s3s_G P47 protein; AAA ATPase 97.3 0.0017 5.8E-08 44.6 8.7 68 4-78 49-119 (127)
112 2bps_A YUKD protein; ubiquitin 97.3 0.00068 2.3E-08 43.6 5.9 70 8-80 5-76 (81)
113 3ivf_A Talin-1; FERM domain, c 97.2 0.0022 7.6E-08 50.3 9.6 71 5-80 1-77 (371)
114 1wj4_A KIAA0794 protein; UBX d 97.2 0.0025 8.5E-08 43.6 8.2 66 4-78 40-110 (124)
115 2cr5_A Reproduction 8; UBX dom 97.1 0.0049 1.7E-07 41.0 9.0 66 5-79 21-90 (109)
116 2kc2_A Talin-1, F1; FERM, adhe 97.1 0.00095 3.2E-08 46.3 5.3 66 9-80 13-115 (128)
117 4e71_A Plexin-B2, MM1; transme 96.1 0.018 6E-07 39.0 6.4 69 7-79 11-102 (111)
118 3h6n_A Plexin-D1; structural g 95.4 0.097 3.3E-06 36.1 8.0 70 17-94 16-105 (127)
119 2al3_A TUG long isoform; TUG U 95.2 0.13 4.4E-06 33.5 7.6 76 7-96 9-84 (90)
120 2r2o_A Plexin-B1; effector dom 94.8 0.16 5.4E-06 35.5 7.8 80 7-94 24-129 (138)
121 4e74_A Plexin-A4; RBD, structu 92.9 0.29 9.8E-06 33.3 6.0 79 7-93 13-114 (117)
122 2l32_A Small archaeal modifier 92.6 0.37 1.3E-05 29.7 5.7 50 8-69 1-50 (74)
123 1vjk_A Molybdopterin convertin 91.3 1.5 5E-05 27.9 7.8 68 7-80 9-87 (98)
124 3hm6_X Plexin-B1; structural g 89.0 2.3 7.7E-05 36.3 8.9 79 7-93 257-361 (644)
125 3po0_A Small archaeal modifier 88.5 1.8 6E-05 26.8 6.3 59 16-80 15-78 (89)
126 2v1y_A Phosphatidylinositol-4, 88.3 0.71 2.4E-05 30.8 4.4 35 6-41 18-52 (108)
127 3kuz_A Plexin-C1; structural g 87.6 4.9 0.00017 27.5 8.4 40 19-60 40-81 (126)
128 3ig3_A Plxna3 protein; plexin 87.6 3.9 0.00013 34.8 9.5 80 7-94 233-335 (627)
129 1ryj_A Unknown; beta/alpha pro 87.5 3.1 0.00011 24.8 6.9 55 8-80 5-59 (70)
130 4a3p_A Ubiquitin carboxyl-term 86.4 5 0.00017 29.1 8.6 52 23-80 144-201 (217)
131 3ge3_C Toluene-4-monooxygenase 83.7 6.5 0.00022 25.1 9.5 70 8-80 4-76 (84)
132 2q5w_D Molybdopterin convertin 82.8 2.7 9.1E-05 25.1 4.8 50 19-80 17-66 (77)
133 1wgr_A Growth factor receptor- 82.4 3.2 0.00011 27.2 5.4 36 5-41 7-42 (100)
134 1oey_A P67-PHOX, neutrophil cy 82.1 4.2 0.00014 25.8 5.7 47 7-63 5-51 (83)
135 3jyu_A Ubiquitin carboxyl-term 81.0 14 0.00048 27.0 9.7 51 23-79 156-212 (231)
136 1rws_A Hypothetical protein PF 79.2 1.7 5.9E-05 26.5 3.1 38 23-71 25-62 (77)
137 2y3a_A Phosphatidylinositol-4, 79.1 12 0.0004 33.8 9.4 83 4-94 48-137 (1092)
138 1fm0_D Molybdopterin convertin 78.7 3.6 0.00012 24.7 4.5 49 23-80 21-70 (81)
139 1ef1_A Moesin; membrane, FERM 77.7 16 0.00054 27.0 8.6 79 7-97 1-84 (294)
140 1h4r_A Merlin; FERM, neurofibr 77.4 19 0.00066 26.8 9.1 79 6-96 21-103 (314)
141 2daj_A KIAA0977 protein, COBL- 74.5 2.6 9E-05 27.2 2.9 69 5-78 8-76 (91)
142 3rpf_C Molybdopterin convertin 74.0 11 0.00039 22.3 6.3 62 9-80 2-63 (74)
143 1wgk_A Riken cDNA 2900073H19 p 71.1 12 0.00041 24.6 5.8 40 6-46 10-60 (114)
144 2inc_C TOUB protein; DIIRON, 4 70.9 17 0.00059 23.0 10.1 55 23-79 17-74 (83)
145 2i1j_A Moesin; FERM, coiled-co 70.2 36 0.0012 28.3 9.7 79 7-97 4-87 (575)
146 2c7h_A RBBP6, retinoblastoma-b 69.6 5.9 0.0002 25.3 3.8 33 9-41 8-41 (86)
147 2qjl_A URM1, ubiquitin-related 67.4 13 0.00043 23.5 5.1 22 23-44 24-47 (99)
148 3qij_A Protein 4.1; cytoskelet 67.3 7 0.00024 29.4 4.5 78 6-96 16-98 (296)
149 3hk0_A Growth factor receptor- 65.7 9.6 0.00033 28.6 4.9 37 1-40 4-40 (256)
150 3dwg_C 9.5 kDa culture filtrat 65.0 21 0.00073 21.8 7.9 62 16-80 15-82 (93)
151 1tyg_B YJBS; alpha beta barrel 63.1 17 0.00057 22.9 5.0 51 15-80 25-76 (87)
152 3ivf_A Talin-1; FERM domain, c 59.7 45 0.0015 25.5 8.0 63 7-76 85-156 (371)
153 4eut_A Serine/threonine-protei 58.9 25 0.00086 26.6 6.3 48 16-71 320-368 (396)
154 4gmv_A RAS-associated and plec 57.4 18 0.0006 27.6 5.1 36 4-40 28-63 (281)
155 3qa8_A MGC80376 protein; kinas 54.8 15 0.0005 31.3 4.6 54 14-75 318-372 (676)
156 1f0z_A THis protein; ubiquitin 53.5 25 0.00084 20.3 4.3 51 15-80 5-55 (66)
157 2y5c_A Adrenodoxin-like protei 53.3 17 0.00059 23.0 3.9 31 1-34 1-31 (109)
158 3hhm_A Phosphatidylinositol-4, 50.3 15 0.00052 33.2 4.2 67 8-77 43-118 (1091)
159 3au4_A Myosin-X; protein-prote 50.2 22 0.00074 28.9 4.9 34 7-41 216-249 (555)
160 1y8x_B Ubiquitin-activating en 49.3 16 0.00055 23.6 3.2 58 19-80 6-77 (98)
161 2cu3_A Unknown function protei 46.5 27 0.00092 20.0 3.7 50 15-80 4-53 (64)
162 2kmm_A Guanosine-3',5'-BIS(dip 44.0 44 0.0015 19.1 4.4 28 9-39 2-29 (73)
163 2kl0_A Putative thiamin biosyn 44.0 50 0.0017 19.7 4.8 50 15-80 5-54 (73)
164 3pvl_A Myosin VIIA isoform 1; 42.2 33 0.0011 29.0 4.9 34 7-41 263-296 (655)
165 1n62_A Carbon monoxide dehydro 41.5 30 0.001 24.2 3.9 28 7-36 3-30 (166)
166 1ffv_A CUTS, iron-sulfur prote 41.1 31 0.0011 24.1 3.9 28 7-36 3-30 (163)
167 3hrd_D Nicotinate dehydrogenas 39.5 38 0.0013 23.6 4.1 26 7-34 3-28 (160)
168 3eud_A Protein SHQ1; CS domain 38.5 44 0.0015 22.3 4.1 39 53-96 60-98 (115)
169 2bt6_A Adrenodoxin 1; rutheniu 38.5 38 0.0013 21.3 3.7 28 6-34 5-32 (108)
170 2wlb_A ETP1-FD, electron trans 38.0 48 0.0016 20.5 4.1 28 7-35 3-30 (103)
171 3lxf_A Ferredoxin; iron, iron- 37.6 42 0.0014 21.1 3.9 26 9-35 2-27 (104)
172 2kvr_A Ubiquitin carboxyl-term 37.0 20 0.00067 24.1 2.2 32 23-61 60-91 (130)
173 4dxa_B KREV interaction trappe 34.4 27 0.00093 26.3 2.9 32 6-38 4-37 (322)
174 1ip9_A BEM1 protein; ubiquitin 33.0 60 0.0021 20.5 3.9 34 6-41 11-44 (85)
175 3tca_A Amyloid beta A4 precurs 32.6 62 0.0021 23.3 4.5 35 6-41 33-67 (291)
176 1vd2_A Protein kinase C, IOTA 32.3 95 0.0032 19.5 6.0 34 7-42 6-39 (89)
177 2g1e_A Hypothetical protein TA 32.2 42 0.0014 20.0 3.1 54 23-80 19-79 (90)
178 1jq4_A Methane monooxygenase c 31.3 67 0.0023 19.6 4.0 30 7-37 4-33 (98)
179 4a6q_A Histone deacetylase com 28.9 57 0.0019 22.6 3.5 55 26-80 61-131 (143)
180 1q1o_A Cell division control p 28.7 1.1E+02 0.0036 19.8 4.6 35 7-42 5-46 (98)
181 2k9x_A Tburm1, uncharacterized 28.6 43 0.0015 21.7 2.8 37 8-45 5-51 (110)
182 2cu1_A Mitogen-activated prote 28.0 89 0.0031 20.4 4.2 46 4-61 5-50 (103)
183 1uwm_A Ferredoxin VI, FDVI; el 27.9 76 0.0026 19.6 3.9 25 9-34 2-26 (106)
184 1xlq_A Putidaredoxin, PDX; [2F 27.7 77 0.0026 19.6 3.8 26 9-35 2-27 (106)
185 2l52_A Methanosarcina acetivor 26.8 1.2E+02 0.004 18.8 5.6 69 8-80 4-88 (99)
186 2ylm_A Ubiquitin carboxyl-term 26.7 1.2E+02 0.0041 24.8 5.7 51 19-75 353-409 (530)
187 2hj1_A Hypothetical protein; s 26.4 1.3E+02 0.0043 19.1 6.8 67 5-80 12-78 (97)
188 2c60_A Human mitogen-activated 26.3 96 0.0033 20.4 4.1 37 3-41 27-63 (111)
189 2vq5_A S-norcoclaurine synthas 25.6 25 0.00087 25.3 1.3 21 54-74 3-23 (201)
190 2juo_A GA-binding protein alph 24.3 1.4E+02 0.0049 18.9 4.9 61 24-95 8-68 (89)
191 1rm6_C 4-hydroxybenzoyl-COA re 24.0 79 0.0027 21.7 3.6 27 9-37 4-30 (161)
192 1t3q_A Quinoline 2-oxidoreduct 23.7 94 0.0032 21.3 4.0 29 7-37 9-37 (168)
193 3hui_A Ferredoxin; cytochrome 23.3 1.2E+02 0.0043 19.8 4.4 27 7-34 21-47 (126)
194 4eo0_A Attachment protein G3P; 22.2 72 0.0025 20.8 2.8 24 33-65 58-81 (115)
195 2k5p_A THis protein, thiamine- 22.0 1.4E+02 0.0047 17.9 4.2 52 15-80 5-58 (78)
196 1frr_A Ferredoxin I; electron 20.8 1.1E+02 0.0039 18.2 3.6 26 9-36 3-28 (95)
197 4eku_A Protein-tyrosine kinase 20.5 1.3E+02 0.0046 23.5 4.7 62 9-74 23-97 (392)
198 2al6_A Focal adhesion kinase 1 20.1 60 0.002 25.0 2.5 57 10-73 10-76 (375)
199 3onh_A Ubiquitin-activating en 20.1 1.2E+02 0.0042 20.4 3.8 52 28-80 19-72 (127)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=1.3e-35 Score=208.21 Aligned_cols=116 Identities=66% Similarity=1.117 Sum_probs=92.5
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 81 (117)
|++++.+.|+||+.+|+++.+++++|++||++||++|+++||++++++|.++++|||||+||+|+|+.||++|+|+.+++
T Consensus 11 ~~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 11 AEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp CSSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred hhhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence 57889999999999999995599999999999999999999999999986669999999999999999999999999988
Q ss_pred CCCeEEEEEEeCCCCchhhhhhccCCCCCCeeEeeC
Q 033555 82 PGGVTTMHVVVQPPSTEKEKKAASQPKQNKCVCVIL 117 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~~~~~~~~~~~~~~~~c~c~i~ 117 (117)
|+.++||||++++++++++.+.....+.++|+|+||
T Consensus 91 ~~~v~tmhlVlrl~g~~kkkk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 91 AGAVTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp TTCCEEEEEEECCCSSCCCC----------------
T ss_pred cCCcEEEEEEeccCCccccccCCCCCCCCCceEEeC
Confidence 877899999999999876622344556899999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=181.92 Aligned_cols=108 Identities=26% Similarity=0.506 Sum_probs=94.5
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCc-ccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~-~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
..+.+.|+||+.+|+++. +++++++||++||++|+++||.+ .+++|.++++|||||+||+|+|+.||++|+|+.++
T Consensus 14 ~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~-- 90 (125)
T 2gow_A 14 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK-- 90 (125)
T ss_dssp CTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS--
T ss_pred CCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC--
Confidence 456799999999999998 99999999999999999999999 47787568999999999999999999999999775
Q ss_pred CCeEEEEEEeCCCCchhhh---hhccCCCCCCeeEeeC
Q 033555 83 GGVTTMHVVVQPPSTEKEK---KAASQPKQNKCVCVIL 117 (117)
Q Consensus 83 ~~~~tmhlv~~~~~~~~~~---~~~~~~~~~~c~c~i~ 117 (117)
.+||||++++.++++++ +........+| |+||
T Consensus 91 --~~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 91 --TTVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp --EEEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred --ceEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 57999999999987764 23334568899 9998
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.94 E-value=1.5e-26 Score=160.08 Aligned_cols=92 Identities=25% Similarity=0.438 Sum_probs=83.3
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcc-cCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEK-ENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~-~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
.+.+.|+||+.+|+++. +++++++||++||++|+++||.+| +++|.++++|||||+||+|+|+.||++|+|+.++
T Consensus 14 ~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~--- 89 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 89 (116)
T ss_dssp SSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred CCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 46799999999999998 999999999999999999999994 5665558999999999999999999999998765
Q ss_pred CeEEEEEEeCCCCchhhh
Q 033555 84 GVTTMHVVVQPPSTEKEK 101 (117)
Q Consensus 84 ~~~tmhlv~~~~~~~~~~ 101 (117)
.+||||++++.++++++
T Consensus 90 -~~tlhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 90 -TTVMHLVARETLPEPNS 106 (116)
T ss_dssp -EEEEEEEECSSCSSSCC
T ss_pred -ceEEEEEccCCCCCCCc
Confidence 57999999999988775
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=115.88 Aligned_cols=77 Identities=25% Similarity=0.202 Sum_probs=69.1
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.++|++++.+|+++. +++++++||.+||++|++ ..++| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------ 68 (79)
T 3phx_B 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------ 68 (79)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------
T ss_pred CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHh-----hcCCC--HHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 3689999999999998 999999999999999954 46787 799999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++||+++..|
T Consensus 69 ~~l~l~~rl~G 79 (79)
T 3phx_B 69 STVFMNLRLRG 79 (79)
T ss_dssp CEEEEEECCBC
T ss_pred CEEEEEEecCC
Confidence 38899998764
No 5
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=4.8e-20 Score=123.03 Aligned_cols=76 Identities=13% Similarity=0.157 Sum_probs=66.6
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 81 (117)
+++++-++|++|+.+|+++. ++++|++||.+||++| ++.+|+| +++|||||+||+|+|..||++|+|++|
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I-----~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg-- 85 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVL-----SLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ-- 85 (93)
T ss_dssp ----CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHH-----HHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTT--
T ss_pred CCCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHH-----HHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC--
Confidence 35677899999999999999 9999999999999999 4568888 799999999999999999999999987
Q ss_pred CCCeEEEEEE
Q 033555 82 PGGVTTMHVV 91 (117)
Q Consensus 82 ~~~~~tmhlv 91 (117)
.++||.
T Consensus 86 ----stLhL~ 91 (93)
T 3plu_A 86 ----TNLELY 91 (93)
T ss_dssp ----CEEEEE
T ss_pred ----CEEEEE
Confidence 377775
No 6
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2e-19 Score=118.25 Aligned_cols=85 Identities=22% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCCCceeEEEEEeCCCc--eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc--CCC
Q 033555 2 ASVQDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC--RSP 77 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~--~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~ 77 (117)
++++..++|+|+..+|. ++. +++++++||.+||++|++.+| .++| +++|||||+||+|+|+.+|++| +|.
T Consensus 2 ~~~~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~ 75 (93)
T 1wgd_A 2 SSGSSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQE 75 (93)
T ss_dssp CCCSCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSS
T ss_pred CCCCcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCC
Confidence 46778899999999998 666 778899999999999987643 2566 7999999999999999999999 998
Q ss_pred CCCCCCCeEEEEEEeCCCCch
Q 033555 78 LCDIPGGVTTMHVVVQPPSTE 98 (117)
Q Consensus 78 ~g~~~~~~~tmhlv~~~~~~~ 98 (117)
++ .++||++++.+..
T Consensus 76 ~~------~~i~lv~~~~gg~ 90 (93)
T 1wgd_A 76 KR------HVLHLVCNVKSGP 90 (93)
T ss_dssp CS------EEEEEECCCCCCC
T ss_pred CC------CEEEEEeCCCCCC
Confidence 65 5899999988753
No 7
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=115.53 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=66.8
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCC
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
+..+.++|+|+..+|+++. +++++++||.+||++|++. .++| +++|||||+||.|+|+.+|++|+| .|
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i-~g--- 80 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 80 (88)
T ss_dssp --CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred cCCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCCCcHHHcCC-CC---
Confidence 4556899999999999998 9999999999999999644 5777 799999999999999999999999 56
Q ss_pred CCeEEEEEEeC
Q 033555 83 GGVTTMHVVVQ 93 (117)
Q Consensus 83 ~~~~tmhlv~~ 93 (117)
.++||++|
T Consensus 81 ---~~i~lv~R 88 (88)
T 4eew_A 81 ---KVIHLVER 88 (88)
T ss_dssp ---EEEEEEEC
T ss_pred ---cEEEEEEC
Confidence 58999875
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=6e-19 Score=114.74 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=69.2
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.++|+|++.+|+++. +++++++||.+||++|+.. .++| +++|||||+||.|+|+.+|++|+| .|
T Consensus 3 ~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g----- 68 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAAS-----VSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GG----- 68 (90)
T ss_dssp CCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBGGGGTC-TT-----
T ss_pred CcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCeECCCCCCHHHcCC-CC-----
Confidence 46899999999999998 9999999999999999644 5777 799999999999999999999999 56
Q ss_pred eEEEEEEeCCCCch
Q 033555 85 VTTMHVVVQPPSTE 98 (117)
Q Consensus 85 ~~tmhlv~~~~~~~ 98 (117)
.++||+++..+..
T Consensus 69 -~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 69 -KVIHLVERAPPQT 81 (90)
T ss_dssp -EEEEEEECCCC--
T ss_pred -cEEEEEecCCCCC
Confidence 4889999976643
No 9
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=2.5e-19 Score=120.99 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=67.8
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCC
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
++++.++|+|++.+|+++. ++++|++||.+||++|+ +.+++| +++|||||+||+|+|+.||++|+|.++
T Consensus 24 ~~~~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia-----~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~g--- 92 (100)
T 1uh6_A 24 GAATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIA-----AQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDG--- 92 (100)
T ss_dssp SCCCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred CCCCeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHH-----HHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence 3456799999999999999 99999999999999995 557887 799999999999999999999999976
Q ss_pred CCeEEEEEEe
Q 033555 83 GGVTTMHVVV 92 (117)
Q Consensus 83 ~~~~tmhlv~ 92 (117)
.++||+-
T Consensus 93 ---stlhL~~ 99 (100)
T 1uh6_A 93 ---MNLELYY 99 (100)
T ss_dssp ---EEEEEEC
T ss_pred ---CEEEEEe
Confidence 5788863
No 10
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.5e-19 Score=117.86 Aligned_cols=76 Identities=17% Similarity=0.436 Sum_probs=64.6
Q ss_pred eEEEEEeCCCceeeeeec--CCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCC-CCCCCCCC
Q 033555 8 LEIKFRLTDGSDIGPKSF--PAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCDIPGG 84 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~--~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~~~~ 84 (117)
++|+||+.+|+++. +++ ++++||.+||++|.++ .+++| +++|||||+||+|+|+.+|++|+| ++|
T Consensus 2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~----- 69 (87)
T 2lxa_A 2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN----- 69 (87)
T ss_dssp CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHT----TSCSS--STTEEEEETTEECCTTCBHHHHCCCGGG-----
T ss_pred EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHH----hcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC-----
Confidence 68999999999887 764 4999999999999432 35777 799999999999999999999999 555
Q ss_pred eEEEEEEeCCCC
Q 033555 85 VTTMHVVVQPPS 96 (117)
Q Consensus 85 ~~tmhlv~~~~~ 96 (117)
.++||+.+++-
T Consensus 70 -stl~v~~~~~~ 80 (87)
T 2lxa_A 70 -STITVMIKPNL 80 (87)
T ss_dssp -CEEEEEECCCC
T ss_pred -CEEEEEcCCCc
Confidence 47888888764
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=6.5e-19 Score=113.51 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=70.9
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCC
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
+....++|+|+..+|+++. +++++++||.+||++|+.. .++| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 8 ~~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~--- 76 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG--- 76 (88)
T ss_dssp SCCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred CCCCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence 3456899999999999998 9999999999999999644 5677 799999999999999999999999977
Q ss_pred CCeEEEEEEeCCCC
Q 033555 83 GGVTTMHVVVQPPS 96 (117)
Q Consensus 83 ~~~~tmhlv~~~~~ 96 (117)
.++||+++..+
T Consensus 77 ---~~i~l~~rl~G 87 (88)
T 3dbh_I 77 ---SVLHLVLRLRG 87 (88)
T ss_dssp ---CEEEECCCCCC
T ss_pred ---CEEEEEEeCCC
Confidence 38899988765
No 12
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.78 E-value=5.9e-19 Score=115.13 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=67.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+++. +++++++||.+||++|++ ..++| +++|||||+||.|+|+.+|++|+|.+| .+
T Consensus 1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEE-----KEGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SV 66 (88)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHH-----HHCcC--hhHEEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 47899999999998 999999999999999964 45777 799999999999999999999999977 38
Q ss_pred EEEEeCCCCchh
Q 033555 88 MHVVVQPPSTEK 99 (117)
Q Consensus 88 mhlv~~~~~~~~ 99 (117)
+||+++..+...
T Consensus 67 l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 67 LHLVLALRGGGG 78 (88)
T ss_dssp EEEECBCC----
T ss_pred EEEEEECCCCCC
Confidence 899999988643
No 13
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=4.4e-19 Score=112.72 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=70.4
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
|+.++|+++..+|+++. +++++++||.+||++|++ ..++| +++|||+|+|+.|+|+.||++|++.++
T Consensus 1 m~~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~-----~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~----- 67 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQ-----RQGVP--MNSLRFLFEGQRIADNHTPKELGMEEE----- 67 (79)
T ss_dssp CCEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCHHHHTCCTT-----
T ss_pred CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HHCCC--cccEEEEECCEEeCCCCCHHHcCCCCC-----
Confidence 46799999999999998 999999999999999954 46787 799999999999999999999999977
Q ss_pred eEEEEEEeCCCC
Q 033555 85 VTTMHVVVQPPS 96 (117)
Q Consensus 85 ~~tmhlv~~~~~ 96 (117)
.++|++++..|
T Consensus 68 -~~i~l~~~~~G 78 (79)
T 2uyz_B 68 -DVIEVYQEQTG 78 (79)
T ss_dssp -EEEEEEECCCC
T ss_pred -CEEEEEEeccC
Confidence 48899998765
No 14
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.4e-18 Score=112.09 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 81 (117)
+++...++|+|+..+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|++.++
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g-- 71 (87)
T 1wh3_A 2 SSGSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQ-----QGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDS-- 71 (87)
T ss_dssp CCCSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHH-----TCCC--TTTEEEEETTEECCSSSBHHHHTCCTT--
T ss_pred CCCCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHH-----hCCC--hHHEEEEECCEEccCCCCHHHCCCCCC--
Confidence 35667899999999999998 9999999999999999644 5677 799999999999999999999999876
Q ss_pred CCCeEEEEEEeCCCCc
Q 033555 82 PGGVTTMHVVVQPPST 97 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~~ 97 (117)
.++||+++..+.
T Consensus 72 ----~~i~l~~~~~GG 83 (87)
T 1wh3_A 72 ----DTLILSKKKGSG 83 (87)
T ss_dssp ----EEEEEEECSCCC
T ss_pred ----CEEEEEEeccCC
Confidence 589999998774
No 15
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=118.53 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=63.2
Q ss_pred CCceeEEEEEeCCCc--eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc--CCCCC
Q 033555 4 VQDQLEIKFRLTDGS--DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC--RSPLC 79 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~--~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g 79 (117)
.+..+.|+||+.+|+ ++. +++++++||.+||++|+++|| ++|. +++|||||+||+|+|+.+|++| +|..+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~----g~pp-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~ 93 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYP----SKPL-TKDQRLVYSGRLLPDHLQLKDILRKQDEY 93 (99)
T ss_dssp ---CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHST----TCCC-TTTCCEEETTEEECTTSBTHHHHTTTCSE
T ss_pred CCCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhc----CCCC-hhhEEEEECCEECCCCCCHHHHhcCCCCC
Confidence 346799999999998 566 888999999999999976653 4442 6999999999999999999999 99866
Q ss_pred CCCCCeEEEEEE
Q 033555 80 DIPGGVTTMHVV 91 (117)
Q Consensus 80 ~~~~~~~tmhlv 91 (117)
.+|||+
T Consensus 94 ------~tihLv 99 (99)
T 2kdb_A 94 ------HMVHLV 99 (99)
T ss_dssp ------EEEEEC
T ss_pred ------CEEEeC
Confidence 588875
No 16
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=110.63 Aligned_cols=80 Identities=24% Similarity=0.384 Sum_probs=70.1
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 81 (117)
+++...++|+++..+|+.+. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|++.+|
T Consensus 2 ~~~~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~-----~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g-- 71 (81)
T 2dzi_A 2 SSGSSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEK-----LNVP--VRQQRLLFKGKALADGKRLSDYSIGPN-- 71 (81)
T ss_dssp CCSSSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEECCTTSBGGGGTCCSS--
T ss_pred CCCCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeECCCCCcHHHcCCCCC--
Confidence 45677899999999999998 9999999999999999654 5677 799999999999999999999999977
Q ss_pred CCCeEEEEEEeCCC
Q 033555 82 PGGVTTMHVVVQPP 95 (117)
Q Consensus 82 ~~~~~tmhlv~~~~ 95 (117)
.++|++++++
T Consensus 72 ----~~i~l~~~~~ 81 (81)
T 2dzi_A 72 ----SKLNLVVKPL 81 (81)
T ss_dssp ----BCCEEECCCC
T ss_pred ----CEEEEEEeCC
Confidence 3778888753
No 17
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.77 E-value=1.3e-18 Score=113.70 Aligned_cols=77 Identities=26% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
....++|+|++.+|+++. +++++++||.+||++|++ ..++| +++|||+|+|+.|+|+.+|++|+|.+|+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~--- 82 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES--- 82 (91)
T ss_dssp CCCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTC---
T ss_pred CCCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHh-----hhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCC---
Confidence 356799999999999998 999999999999999964 45777 7999999999999999999999999873
Q ss_pred CeEEEEEEeCC
Q 033555 84 GVTTMHVVVQP 94 (117)
Q Consensus 84 ~~~tmhlv~~~ 94 (117)
++||+++.
T Consensus 83 ---~i~l~~rl 90 (91)
T 3v6c_B 83 ---TLHLVLRL 90 (91)
T ss_dssp ---EEEEECCC
T ss_pred ---EEEEEEec
Confidence 78888875
No 18
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=112.41 Aligned_cols=83 Identities=24% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCCceeEEEEEeCCC-ceeeee-ecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033555 2 ASVQDQLEIKFRLTDG-SDIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G-~~~~~l-~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
+++...++|+|++.+| +++. + ++++++||.+||++|+.. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~-----~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g 73 (89)
T 1wy8_A 2 SSGSSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWAL-----FDVR--PECQRLFYRGKQLENGYTLFDYDVGLN 73 (89)
T ss_dssp CCCSSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHH-----SCCC--TTTEEEEETTEECCSSSBHHHHTCCTT
T ss_pred CCCCCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHH-----HCcC--hhhEEEEECCeECCCCCCHHHCCCCCC
Confidence 4566789999999999 6888 9 499999999999999644 5777 799999999999999999999999976
Q ss_pred CCCCCeEEEEEEeCCCCch
Q 033555 80 DIPGGVTTMHVVVQPPSTE 98 (117)
Q Consensus 80 ~~~~~~~tmhlv~~~~~~~ 98 (117)
.++||++++.+..
T Consensus 74 ------~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 74 ------DIIQLLVRPDSGP 86 (89)
T ss_dssp ------CEEEEEECCCCSS
T ss_pred ------CEEEEEEeCCCCC
Confidence 4889999987753
No 19
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=2.3e-18 Score=115.55 Aligned_cols=79 Identities=18% Similarity=0.444 Sum_probs=65.1
Q ss_pred CCceeEEEEEeCCCceeeee--ecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCC-CCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPK--SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCD 80 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l--~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~ 80 (117)
.++.++|+||+.+|+.+. + ++++++||.+||++|.++ .+++| +++|||||+||+|+|+.+|++|+| .+|.
T Consensus 16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~----~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ 88 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISE----EKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANS 88 (98)
T ss_dssp --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHT----TSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBC
T ss_pred CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHH----hcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCC
Confidence 456899999999999766 5 667999999999999533 24677 799999999999999999999999 8763
Q ss_pred CCCCeEEEEEEeCCC
Q 033555 81 IPGGVTTMHVVVQPP 95 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~ 95 (117)
++||+++.+
T Consensus 89 ------ti~lmvskp 97 (98)
T 4a20_A 89 ------TITVMIKPN 97 (98)
T ss_dssp ------EEEEEECCC
T ss_pred ------EEEEEEeCC
Confidence 777777653
No 20
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=2.7e-18 Score=110.12 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=67.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+|++.+|+.+. +++++++||.+||++|+..|+ .+++| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 4 ~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------ 72 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK------ 72 (85)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT------
T ss_pred ceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC------
Confidence 3689999999999998 999999999999999975431 25677 799999999999999999999999977
Q ss_pred EEEEEEeCCCCc
Q 033555 86 TTMHVVVQPPST 97 (117)
Q Consensus 86 ~tmhlv~~~~~~ 97 (117)
.++||+.+...+
T Consensus 73 ~~i~l~~~~~~~ 84 (85)
T 2wyq_A 73 NFVVVMVTKTKA 84 (85)
T ss_dssp SEEEEEEC----
T ss_pred CEEEEEEcCCCC
Confidence 378888876543
No 21
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.1e-18 Score=113.45 Aligned_cols=75 Identities=16% Similarity=0.288 Sum_probs=66.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCee-cCCCCcccccCCCCCCCCCC
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-LENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~~~~~ 84 (117)
.-+.|++++.+|+++. +++++++||.+||++|++ ..++| +++|||||+||. |+|+.+|++|+|.+|.
T Consensus 9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs---- 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIER-----SQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTS---- 76 (84)
T ss_dssp CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHH-----HHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence 3588999999999998 999999999999999964 46787 799999999999 9999999999999773
Q ss_pred eEEEEEEeCC
Q 033555 85 VTTMHVVVQP 94 (117)
Q Consensus 85 ~~tmhlv~~~ 94 (117)
++||+++|
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 67888765
No 22
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=9.4e-19 Score=118.13 Aligned_cols=77 Identities=14% Similarity=0.042 Sum_probs=61.3
Q ss_pred CCceeEEEEEeCC----CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCC
Q 033555 4 VQDQLEIKFRLTD----GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLC 79 (117)
Q Consensus 4 ~~~~~~i~~~~~~----G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 79 (117)
++++++ +++.+ |+.+. +++++++||.+||++|+ +.+++| +++|||||+||+|+|+.||++|+|..|
T Consensus 14 g~ati~--V~~~~~~~~~~~~~-lev~~~~TV~~lK~kI~-----~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~g 83 (100)
T 1wju_A 14 GIATIE--VFLPPRLKKDRKNL-LETRLHITGRELRSKIA-----ETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHN 83 (100)
T ss_dssp CEEEEE--EECCTTTCCSSSEE-EEEESSSBHHHHHHHHH-----HHTTCC--STTCEEEETTEECCTTSBHHHHTCCSS
T ss_pred ceEEEE--EEecCCCCCCcEEE-EEeCCcCHHHHHHHHHH-----HHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCC
Confidence 444444 45555 77888 99999999999999995 456787 799999999999999999999999977
Q ss_pred CCCCCeEEEEEEeCCCCc
Q 033555 80 DIPGGVTTMHVVVQPPST 97 (117)
Q Consensus 80 ~~~~~~~tmhlv~~~~~~ 97 (117)
.++ +++++.+.
T Consensus 84 ------sti-~vl~lrg~ 94 (100)
T 1wju_A 84 ------VKA-MVLELKQS 94 (100)
T ss_dssp ------EEE-EEECCCCC
T ss_pred ------CEE-EEEEECCC
Confidence 355 44555443
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.7e-18 Score=108.61 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=66.0
Q ss_pred eeEEEEEeCCCcee-eeee-cCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 7 QLEIKFRLTDGSDI-GPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 7 ~~~i~~~~~~G~~~-~~l~-~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.++|+|++.+|+++ . ++ +++++||.+||++|+. ..++| +++|||+|+|+.|+|+.+|++|++.+|
T Consensus 2 ~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~-----~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g----- 68 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQE-----LFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLN----- 68 (78)
T ss_dssp CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTCBTTTTTCCTT-----
T ss_pred cEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHH-----HHCcC--hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence 57899999999986 7 89 9999999999999964 46787 799999999999999999999999977
Q ss_pred eEEEEEEeCC
Q 033555 85 VTTMHVVVQP 94 (117)
Q Consensus 85 ~~tmhlv~~~ 94 (117)
.++||++++
T Consensus 69 -~~i~l~~r~ 77 (78)
T 2faz_A 69 -DTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEECC
T ss_pred -CEEEEEEeC
Confidence 388998876
No 24
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-18 Score=113.98 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=69.0
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
...++|+|+..+|+.+. +++++++||.+||++|++. .++| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g----- 86 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 86 (98)
T ss_dssp --CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTCBSGGGTCCTT-----
T ss_pred CCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 45789999999999998 9999999999999999654 5677 799999999999999999999999977
Q ss_pred eEEEEEEeCCCC
Q 033555 85 VTTMHVVVQPPS 96 (117)
Q Consensus 85 ~~tmhlv~~~~~ 96 (117)
.++||+++..+
T Consensus 87 -~~i~l~~rl~G 97 (98)
T 4hcn_B 87 -STLHLVLRLRG 97 (98)
T ss_dssp -EEEEEECBCSC
T ss_pred -CEEEEEEecCC
Confidence 58999998765
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.75 E-value=4.9e-18 Score=106.02 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=66.2
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+++..+|+++. +++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|++.+| .+
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYSGKQMNDEKTAADYKILGG------SV 66 (76)
T ss_dssp CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 47899999999998 9999999999999999643 5677 799999999999999999999999977 37
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|++++..+
T Consensus 67 i~l~~~~~G 75 (76)
T 1ndd_A 67 LHLVLALRG 75 (76)
T ss_dssp EEEEECCC-
T ss_pred EEEEEeCCC
Confidence 899988765
No 26
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.9e-18 Score=115.73 Aligned_cols=76 Identities=17% Similarity=0.318 Sum_probs=64.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+||+.+|+.+. +++++++||.+||++|+.. .++| +++|||||+||+|+|+.+|++|+|.+|+ +
T Consensus 2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQS-----ISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGD------Q 67 (106)
T ss_dssp -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHT-----TTSC--GGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--hhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence 67899999999998 9999999999999999644 5677 7999999999999999999999999873 7
Q ss_pred EEEEeCCCCc
Q 033555 88 MHVVVQPPST 97 (117)
Q Consensus 88 mhlv~~~~~~ 97 (117)
+||+++...+
T Consensus 68 i~lv~~~~~~ 77 (106)
T 3m62_B 68 VVFMVSQKKS 77 (106)
T ss_dssp EEEECCC---
T ss_pred EEEEEcCCCC
Confidence 8888876553
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.2e-18 Score=109.46 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=67.4
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+++..+|+++. +++++++||.+||++|++. .++| +++|||+|+||.|+|+.+|++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHS----- 68 (85)
T ss_dssp --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETBEECCTTCBTTTTTCCTTC-----
T ss_pred CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCeECCCCCCHHHCCCCCCC-----
Confidence 3689999999999998 9999999999999999654 4677 7999999999999999999999999773
Q ss_pred EEEEEEeCCCCc
Q 033555 86 TTMHVVVQPPST 97 (117)
Q Consensus 86 ~tmhlv~~~~~~ 97 (117)
++||+++..+.
T Consensus 69 -~i~l~~rl~GG 79 (85)
T 3n3k_B 69 -ALYLLLKLRGG 79 (85)
T ss_dssp -EEEEEECCC--
T ss_pred -EEEEEEeccCC
Confidence 88999998764
No 28
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.75 E-value=5.3e-18 Score=111.27 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=68.1
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+++. +++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|+|.++ .+
T Consensus 2 m~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~------~~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 67 (96)
T ss_dssp CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred cEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhh-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------CE
Confidence 68999999999998 9999999999999999654 5777 799999999999999999999999877 38
Q ss_pred EEEEeCCCCchh
Q 033555 88 MHVVVQPPSTEK 99 (117)
Q Consensus 88 mhlv~~~~~~~~ 99 (117)
+||+++..+...
T Consensus 68 i~l~~r~~gG~~ 79 (96)
T 3k9o_B 68 LHLVLRLRGYAD 79 (96)
T ss_dssp EEEEECCCC---
T ss_pred EEEEEEcCCCCc
Confidence 899999888644
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=112.21 Aligned_cols=78 Identities=24% Similarity=0.172 Sum_probs=66.6
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.++|+|++.+|+.+. +++++++||.+||++|+. ..++| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 4 ~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~ 69 (88)
T 2hj8_A 4 PLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 69 (88)
T ss_dssp EEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHH-----HTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred cEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHH-----HhCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 589999999999998 999999999999999964 46787 799999999999999999999999977 3
Q ss_pred EEEEEeCCCCch
Q 033555 87 TMHVVVQPPSTE 98 (117)
Q Consensus 87 tmhlv~~~~~~~ 98 (117)
++||+.+..+..
T Consensus 70 ~i~l~~~~~gg~ 81 (88)
T 2hj8_A 70 TVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEC-----
T ss_pred EEEEEEEcCCCc
Confidence 889999887754
No 30
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.3e-17 Score=109.67 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=69.7
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCC-CcccccCCCCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCD 80 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~ 80 (117)
++++..++|+|+..+|+.+. +++++++||.+||++|+.. . +++|||||.||.|+|+ .+|++|+|.+|
T Consensus 2 ~~~~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~-----~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g- 69 (95)
T 1wia_A 2 SSGSSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPG-----Q-----ESQMKLIYQGRLLQDPARTLSSLNITNN- 69 (95)
T ss_dssp CCCCCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSS-----T-----TTTCEEEETTEECCCSSCBTTTTTCCTT-
T ss_pred CCCCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhh-----C-----cCcEEEEECCEEccCCcCCHHHcCCCCC-
Confidence 45678899999999999998 9999999999999999543 2 4899999999999999 99999999876
Q ss_pred CCCCeEEEEEEeCCCCch
Q 033555 81 IPGGVTTMHVVVQPPSTE 98 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~~~~ 98 (117)
.+|||+++...+.
T Consensus 70 -----~~i~l~~~~~~~~ 82 (95)
T 1wia_A 70 -----CVIHCHRSPPGAA 82 (95)
T ss_dssp -----EEEEEECCCCCCC
T ss_pred -----CEEEEEECCCCCC
Confidence 5889998876543
No 31
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=2.6e-18 Score=114.09 Aligned_cols=77 Identities=21% Similarity=0.285 Sum_probs=69.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+|++.+|+++. +++.+++||.+||++|+ +..++| +++|||||+|+.|+|+.||++|+|.+++
T Consensus 20 ~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~-----~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~----- 86 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYC-----QRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 86 (97)
T ss_dssp CEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTC-----
T ss_pred CcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHH-----HHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCC-----
Confidence 4599999999999998 99999999999999995 446787 7999999999999999999999999874
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
++||+++..|
T Consensus 87 -~I~l~~~~~G 96 (97)
T 1wyw_B 87 -VIEVYQEQTG 96 (97)
T ss_dssp -EEEEEESSSC
T ss_pred -EEEEEEecCC
Confidence 7899998765
No 32
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.8e-18 Score=108.05 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=69.2
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.++|+|+..+|+++. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~-----~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------ 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKW------ 67 (85)
T ss_dssp -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGCEEEETTEECCTTSBTGGGTCCTT------
T ss_pred CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCCCCHHHcCCCCC------
Confidence 4689999999999998 9999999999999999654 4677 799999999999999999999999876
Q ss_pred EEEEEEeCCCCc
Q 033555 86 TTMHVVVQPPST 97 (117)
Q Consensus 86 ~tmhlv~~~~~~ 97 (117)
.++||+++..+.
T Consensus 68 ~~l~l~~r~~GG 79 (85)
T 3mtn_B 68 STLFLLLRLRGG 79 (85)
T ss_dssp CEEEEECCCCCC
T ss_pred CEEEEEEECcCC
Confidence 388999988764
No 33
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=119.09 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=71.0
Q ss_pred CCCceeEEEEEeC-CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC
Q 033555 3 SVQDQLEIKFRLT-DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (117)
Q Consensus 3 ~~~~~~~i~~~~~-~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 81 (117)
..+..+.|++++. +|..+. ++++++.||.+||++|+.+ .++| +++|||||+||+|+|++||++||+++|.
T Consensus 11 ~~~~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~-----~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~- 81 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHL-----LGIP--HSVLQIRYSGKILKNNETLVQHGVKPQE- 81 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHH-----HTCC--TTTEEEEETTEEECSSCCHHHHSCCSSC-
T ss_pred ccCccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhh-----hCCC--hHHEEEEECCeEcCCcchHHHcCCCCCC-
Confidence 3566788998854 577887 9999999999999999654 4687 7999999999999999999999999773
Q ss_pred CCCeEEEEEEeCCCCchh
Q 033555 82 PGGVTTMHVVVQPPSTEK 99 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~~~~ 99 (117)
|+||+++...|+.
T Consensus 82 -----TIhLvi~s~~p~~ 94 (118)
T 2daf_A 82 -----IVQVEIFSTNPDL 94 (118)
T ss_dssp -----EEEEEEEESCTTT
T ss_pred -----EEEEEEecCCCcc
Confidence 8999999877654
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=6.3e-18 Score=111.94 Aligned_cols=77 Identities=18% Similarity=0.326 Sum_probs=68.6
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCC-CcccccCCCCCCCCCC
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRSPLCDIPGG 84 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~~~~ 84 (117)
..++|+|+..+| ++. +++++++||.+||++|+. ..++| +++|||||+||.|+|+ .+|++|+|.++
T Consensus 14 ~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g----- 79 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHI-----VENTP--IKRMQLYYSGIELADDYRNLNEYGITEF----- 79 (94)
T ss_dssp CCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHH-----HSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTT-----
T ss_pred CCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHH-----HHCcC--HHHEEEEECCEECCCCcccHHHCCCCCC-----
Confidence 478999999888 787 999999999999999954 46787 7999999999999999 99999999976
Q ss_pred eEEEEEEeCCCCc
Q 033555 85 VTTMHVVVQPPST 97 (117)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (117)
.++||++++.+.
T Consensus 80 -stl~lv~r~~gg 91 (94)
T 2kan_A 80 -SEIVVFLKSINR 91 (94)
T ss_dssp -EEEEEEECCCSS
T ss_pred -CEEEEEEeCCCC
Confidence 589999998874
No 35
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.6e-18 Score=117.82 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCC-------------CCceeEEecCeecC-C
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT-------------VKDVKLISAGKILE-N 67 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~-------------~~~qrLI~~Gk~L~-D 67 (117)
+|+...+.|+|++.+|++++ +++++++||++||++|... .++|.. .++|||||+||+|. |
T Consensus 2 ~~~~~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~-----~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD 75 (105)
T 1v2y_A 2 SSGSSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRY-----VQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTED 75 (105)
T ss_dssp CCCCCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCS
T ss_pred CCCCCcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHH-----hCCCcccccCcceeeeeecceeEEEEeCCcCccCC
Confidence 45667899999999999999 9999999999999999754 333310 15789999999995 7
Q ss_pred CCcccccCCCCCCCCCCeEEEEEEeCCCCc
Q 033555 68 NRTLGECRSPLCDIPGGVTTMHVVVQPPST 97 (117)
Q Consensus 68 ~~tL~~~~i~~g~~~~~~~tmhlv~~~~~~ 97 (117)
++||++|+|.+| .++|++++..+.
T Consensus 76 ~~tL~dygI~~g------~~l~lv~~lr~~ 99 (105)
T 1v2y_A 76 RKKLRDYGIRNR------DEVSFIKKLGQK 99 (105)
T ss_dssp SSBHHHHTCCSS------EEEEEEECSCSC
T ss_pred cCCHHHcCCCCC------CEEEEEehhccC
Confidence 799999999987 488999987663
No 36
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-17 Score=110.33 Aligned_cols=78 Identities=27% Similarity=0.362 Sum_probs=66.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+.+. +++++++||.+||++|+..+. .+++| +++|||||+||.|+|+.+|++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~ 69 (95)
T 1uel_A 1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKN------F 69 (95)
T ss_dssp CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSS------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 57899999999998 999999999999999975431 15677 7999999999999999999999999773 7
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+||+++...
T Consensus 70 i~l~~~~~~ 78 (95)
T 1uel_A 70 VVVMVTKPK 78 (95)
T ss_dssp EEEEESSCC
T ss_pred EEEEEeCCC
Confidence 788776543
No 37
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.74 E-value=1.3e-17 Score=104.12 Aligned_cols=75 Identities=25% Similarity=0.387 Sum_probs=66.8
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+++..+|+.+. +++++++||.+||++|++. .++| +++|||+|.||.|+|+.+|++|++.+| .+
T Consensus 1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g------~~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRE------ST 66 (76)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTCBTGGGTCCTT------CE
T ss_pred CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 47899999999998 9999999999999999654 4677 799999999999999999999999977 37
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|++++..|
T Consensus 67 i~l~~~~~G 75 (76)
T 3a9j_A 67 LHLVLRLRG 75 (76)
T ss_dssp EEEEECCCC
T ss_pred EEEEEeCCC
Confidence 899998765
No 38
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.2e-17 Score=116.00 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=68.9
Q ss_pred CCCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 1 ~~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
|++++..++|+|+.. |+.+. +++++++||.+||++|+. ..++| +++|||||.||+|+|+.+|++|+|.+|
T Consensus 26 ~~~~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g- 95 (125)
T 1j8c_A 26 APAEPKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISK-----RFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDG- 95 (125)
T ss_dssp CCCCCCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHH-----HHCSC--SSSEEEEETTEEESTTSCGGGTTCSSS-
T ss_pred ccCCCCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHH-----HHCcC--cceEEEEECCEEcCCCCCHHHcCCCCC-
Confidence 345567899999998 99998 999999999999999964 35677 799999999999999999999999876
Q ss_pred CCCCeEEEEEEeCCCCchh
Q 033555 81 IPGGVTTMHVVVQPPSTEK 99 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~~~~~ 99 (117)
.+|||+.+..+...
T Consensus 96 -----stI~lv~~~~gg~~ 109 (125)
T 1j8c_A 96 -----LTVHLVIKRDPNSS 109 (125)
T ss_dssp -----EEEEEEEC------
T ss_pred -----CEEEEEeccCCCCC
Confidence 58899998877533
No 39
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.74 E-value=4.9e-18 Score=117.65 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=64.0
Q ss_pred EEEEeCCCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC-CCCeEE
Q 033555 10 IKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGVTT 87 (117)
Q Consensus 10 i~~~~~~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~~~~t 87 (117)
+++++..++ ++. +++++++||.+||++| ++.+++| +++|||||+||+|+|++||++|+|..+.. +....|
T Consensus 3 vFl~Ikr~ktTI~-ldve~sdTV~~lK~kI-----~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~at 74 (118)
T 4ajy_B 3 VFLMIRRHKTTIF-TDAKESSTVFELKRIV-----EGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EEEEEEEBTEEEE-EEEETTSBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEE
T ss_pred eEEEEecCCEEEE-EEcCCCChHHHHHHHH-----HHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCE
Confidence 455555666 666 8999999999999999 4567888 79999999999999999999999986211 222379
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+||+++..+
T Consensus 75 l~Lvlr~~~ 83 (118)
T 4ajy_B 75 VGLAFRADD 83 (118)
T ss_dssp EEEEECCSS
T ss_pred EEEEEecCC
Confidence 999999744
No 40
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1e-17 Score=109.24 Aligned_cols=77 Identities=26% Similarity=0.384 Sum_probs=64.8
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
-++|.+++.+|+++. +++++++||.+||++|++ ..++| +++|||+|+||.|+|+.+|++|++.+| .
T Consensus 9 ~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~ 74 (88)
T 1sif_A 9 GLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 74 (88)
T ss_dssp -CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCTTSBSGGGTCCTT------C
T ss_pred ceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHH-----HHCcC--hhhEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 478999999999998 999999999999999964 45777 799999999999999999999999977 3
Q ss_pred EEEEEeCCCCc
Q 033555 87 TMHVVVQPPST 97 (117)
Q Consensus 87 tmhlv~~~~~~ 97 (117)
++||+++..+.
T Consensus 75 ~i~l~~r~~GG 85 (88)
T 1sif_A 75 TLHLVLRLRGG 85 (88)
T ss_dssp EEEEEC-----
T ss_pred EEEEEEeCCCC
Confidence 78999887764
No 41
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.1e-18 Score=112.55 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=71.1
Q ss_pred CCCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 1 ~~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
|......++|+|+..+|+ +. +++++++||.+||++|++ ..++| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 16 ~~~~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~g- 85 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQ-----RFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG- 85 (100)
T ss_dssp CSCCTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBHHHHTCCTT-
T ss_pred CCCCCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHH-----HHCcC--hhhEEEEECCEECCCcCcHHHCCCCCC-
Confidence 345567899999999986 66 999999999999999964 45777 799999999999999999999999977
Q ss_pred CCCCeEEEEEEeCCCCch
Q 033555 81 IPGGVTTMHVVVQPPSTE 98 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~~~~ 98 (117)
.++||+++..+.+
T Consensus 86 -----stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 -----LTVHLVIKRQHRA 98 (100)
T ss_dssp -----CEEEEEECCCCSC
T ss_pred -----CEEEEEEcCCCCC
Confidence 3789998877654
No 42
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.73 E-value=1.7e-17 Score=104.28 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=64.3
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.++|+|+. +|+.+. +++++++||.+||++|+. ..++| +++|||+|+||.|+|+.+|++|++.+|+
T Consensus 4 ~m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~-----~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~------ 68 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINK-----ANGIP--VANQRLIYSGKILKDDQTVESYHIQDGH------ 68 (77)
T ss_dssp EEEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------
T ss_pred EEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHH-----HhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCC------
Confidence 48899998 999998 999999999999999964 35777 7999999999999999999999999773
Q ss_pred EEEEEeCC
Q 033555 87 TMHVVVQP 94 (117)
Q Consensus 87 tmhlv~~~ 94 (117)
++|++.++
T Consensus 69 ~i~l~~~~ 76 (77)
T 2bwf_A 69 SVHLVKSQ 76 (77)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 78887764
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.72 E-value=2.5e-17 Score=111.94 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=69.3
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+|+..+|+++. +++++++||.+||++|+.. .++| +++|||+|+||.|+|+.+|++|+|..+
T Consensus 34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g------ 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 99 (111)
T ss_dssp GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTTTTTCCTT------
T ss_pred ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHH-----hCCC--hHHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 4699999999999998 9999999999999999654 5777 799999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++||+++..+
T Consensus 100 s~I~l~~rl~G 110 (111)
T 3vdz_A 100 STLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEecCC
Confidence 38899998775
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=7.9e-18 Score=110.84 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
....++|+|+.. |+.+. +++++++||.+||++|+.. .++| +++|||+|.||.|+|+.+|++|+|.++
T Consensus 14 ~~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g---- 80 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG---- 80 (96)
T ss_dssp CSCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT----
T ss_pred CCCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCC----
Confidence 456799999988 99998 9999999999999999644 5677 799999999999999999999999976
Q ss_pred CeEEEEEEeCCCCc
Q 033555 84 GVTTMHVVVQPPST 97 (117)
Q Consensus 84 ~~~tmhlv~~~~~~ 97 (117)
.++||+++..+.
T Consensus 81 --~~i~l~~~~~~g 92 (96)
T 1wx8_A 81 --STVHVVVRSHSG 92 (96)
T ss_dssp --EEEECCBCCSSC
T ss_pred --CEEEEEEeCCCC
Confidence 588999988764
No 45
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=7.9e-18 Score=116.62 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=61.2
Q ss_pred EEEEeCCCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC-CCCeEE
Q 033555 10 IKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI-PGGVTT 87 (117)
Q Consensus 10 i~~~~~~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~~~~t 87 (117)
+++++..|+ ++. +++++++||.+||++| ++.+++| +++|||||+||+|+|+.||++|+|..... .....|
T Consensus 3 mfl~ir~~ktti~-lev~~sdTV~~lK~kI-----~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~st 74 (118)
T 2fnj_B 3 VFLMIRRHKTTIF-TDAKESSTVFELKRIV-----EGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPAT 74 (118)
T ss_dssp EEEEEEEBTEEEE-EEEETTSBHHHHHHHH-----HHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEE
T ss_pred EEEEEecCCEEEE-EEeCCcChHHHHHHHH-----HHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCE
Confidence 344444565 577 8999999999999999 4567888 79999999999999999999999983100 000268
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+||+++..+
T Consensus 75 L~L~lr~~g 83 (118)
T 2fnj_B 75 VGLAFRADD 83 (118)
T ss_dssp EEEEEBSSS
T ss_pred EEEEecCCC
Confidence 999999433
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=109.76 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=67.6
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
+.+.++|+|+.. |+.+. +++++++||.+||++|+. ..++| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 22 ~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g---- 88 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISK-----RFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDG---- 88 (101)
T ss_dssp -CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHH-----HHTCC--GGGEEEEETTEEECTTCCTGGGTCCTT----
T ss_pred CCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHH-----HHCcC--hhhEEEEECCEECCCcCcHHHcCCCCC----
Confidence 456799999988 88888 999999999999999964 45777 799999999999999999999999877
Q ss_pred CeEEEEEEeCCCC
Q 033555 84 GVTTMHVVVQPPS 96 (117)
Q Consensus 84 ~~~tmhlv~~~~~ 96 (117)
.++||+.+..+
T Consensus 89 --~~I~l~~~~~~ 99 (101)
T 2klc_A 89 --LTVHLVIKTQN 99 (101)
T ss_dssp --CEEEEEECCSS
T ss_pred --CEEEEEEcCCC
Confidence 37888887654
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.9e-17 Score=110.33 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=69.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
+...++|+|+..+|+ +. +++++++||.+||++|+.. .++| +++|||||.||.|+|+.+|++|+|.++
T Consensus 14 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g---- 80 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQR-----FKAH--PDQLVLIFAGKILKDPDSLAQCGVRDG---- 80 (106)
T ss_dssp CSSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHH-----HTCC--TTTEEEEETTEECCTTSCHHHHTCCTT----
T ss_pred CCceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCcCcHHHcCCCCC----
Confidence 356799999998886 66 9999999999999999644 5677 799999999999999999999999976
Q ss_pred CeEEEEEEeCCCCchh
Q 033555 84 GVTTMHVVVQPPSTEK 99 (117)
Q Consensus 84 ~~~tmhlv~~~~~~~~ 99 (117)
.+|||+++..+...
T Consensus 81 --~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 81 --LTVHLVIKRQHRAM 94 (106)
T ss_dssp --EEEEEEECCCCCSC
T ss_pred --CEEEEEEcCCCCCC
Confidence 58899998877544
No 48
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.6e-17 Score=110.82 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=68.1
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+|++.+|+++. +++++++||.+||++|+. ..++| +++|||+|+||.|+|+.+|++|+|..|
T Consensus 22 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------ 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHA-----AEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------ 87 (106)
T ss_dssp CSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHH-----TTCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHH-----HHCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 3589999999999998 999999999999999954 46777 799999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++||+++...
T Consensus 88 ~ti~lv~~~~~ 98 (106)
T 1ttn_A 88 YVVQVIVSQPV 98 (106)
T ss_dssp CEEEEECCCSS
T ss_pred CEEEEEEeCCC
Confidence 38898887654
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=109.24 Aligned_cols=75 Identities=25% Similarity=0.262 Sum_probs=65.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+|+. |+.+. +++++++||.+||++|++ ..++| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 18 ~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~g------ 81 (93)
T 2l7r_A 18 GSMQLFVRA--QELHT-FEVTGQETVAQIKAHVAS-----LEGIA--PEDQVVLLAGAPLEDEATLGQCGVEAL------ 81 (93)
T ss_dssp --CEEEEES--SSEEE-EECCSSCBHHHHHHHHHH-----HHTCC--GGGCEEEETTEECCTTSBHHHHTCCSS------
T ss_pred CcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHH-----HhCcC--hhHEEEEECCEECCCCCcHHHCCCCCC------
Confidence 357888887 88998 999999999999999964 46777 799999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++||+++..+
T Consensus 82 stI~lv~rl~G 92 (93)
T 2l7r_A 82 TTLEVAGRMLG 92 (93)
T ss_dssp CEEEEECCCCC
T ss_pred CEEEEEEecCC
Confidence 48899998875
No 50
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=6.1e-17 Score=107.05 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=67.8
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|+..+|+++. +++++++||.+||++|++. .++| +++|||+|+||.|+|+.+|++|++.+| .+
T Consensus 1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~-----~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (98)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----TCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------CE
T ss_pred CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHH-----HCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------CE
Confidence 47899999999998 9999999999999999654 5677 799999999999999999999999977 37
Q ss_pred EEEEeCCCCch
Q 033555 88 MHVVVQPPSTE 98 (117)
Q Consensus 88 mhlv~~~~~~~ 98 (117)
+||+.+..+..
T Consensus 67 i~l~~~~~gG~ 77 (98)
T 1yx5_B 67 LHLVLRLRGGR 77 (98)
T ss_dssp EEEEECCCCC-
T ss_pred EEEEEeCCCCC
Confidence 89999988643
No 51
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.54 E-value=1e-18 Score=110.00 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=66.2
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|++++.+|+++. +++++++||.+||++|+ +..++| +++|||+|+|+.|+|+.+|++|++.+| .+
T Consensus 1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~-----~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g------~~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVA-----KQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQ------SI 66 (76)
Confidence 46888889999998 99999999999999995 446777 799999999999999999999999877 47
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|+++++.+
T Consensus 67 i~l~~rlrg 75 (76)
T 3b1l_X 67 VHIVQRPRR 75 (76)
Confidence 899888764
No 52
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.70 E-value=6e-17 Score=114.84 Aligned_cols=78 Identities=24% Similarity=0.195 Sum_probs=68.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|++++.+|+++. +++++++||.+||++|+. .+++| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 80 ~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~-----~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g------ 145 (159)
T 3rt3_B 80 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSG-----LEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------ 145 (159)
T ss_dssp CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTSBGGGGTCCTT------
T ss_pred CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-----HHCCC--HHHEEEEECCeecCCCCCHHHcCCCCC------
Confidence 3688999999999998 999999999999999954 46787 799999999999999999999999987
Q ss_pred EEEEEEeCCCCc
Q 033555 86 TTMHVVVQPPST 97 (117)
Q Consensus 86 ~tmhlv~~~~~~ 97 (117)
.++||+++..+.
T Consensus 146 ~~l~l~~rl~GG 157 (159)
T 3rt3_B 146 STVFMNLRLRGG 157 (159)
T ss_dssp CEEEEEECCC--
T ss_pred CEEEEEEecCCC
Confidence 389999998764
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=6e-17 Score=117.56 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=69.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+||+.+|+++. +++++++||.+||++|+. ..++| +++|||+|+||.|+|+.+|++|+|.+| .+
T Consensus 1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------st 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (169)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHH-----HHCCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CE
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHH-----HHCcC--HHHEEEEECCccccCcCcHHHcCCCCC------CE
Confidence 57899999999998 999999999999999964 45777 799999999999999999999999977 38
Q ss_pred EEEEeCCCCchhhh
Q 033555 88 MHVVVQPPSTEKEK 101 (117)
Q Consensus 88 mhlv~~~~~~~~~~ 101 (117)
+||+++..+..++.
T Consensus 67 I~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 67 LHLVLRLRGGGGET 80 (169)
T ss_dssp EEEEECCCC---CC
T ss_pred EEEEEEeccccccc
Confidence 99999998876553
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=6.1e-17 Score=109.26 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=65.9
Q ss_pred ceeEEEEEeCCC---ceeeeeecCC---------CCcHHHHHHHhhhcCCCcccCCCCCCCc-eeEEecCeecCCCCccc
Q 033555 6 DQLEIKFRLTDG---SDIGPKSFPA---------ATSVATLKESVLSQWPKEKENGPRTVKD-VKLISAGKILENNRTLG 72 (117)
Q Consensus 6 ~~~~i~~~~~~G---~~~~~l~~~~---------~~TV~~lK~~I~~~wp~~~~~~p~~~~~-qrLI~~Gk~L~D~~tL~ 72 (117)
..++|+||+.+| ..+. ++|++ ++||.+||++|+...| .++| +++ |||||.||.|+|+.+|+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred CceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence 368899999988 7887 88554 4999999999976532 1676 689 99999999999999999
Q ss_pred ccCCCCCCCCCCeEEEEEEeCCCCc
Q 033555 73 ECRSPLCDIPGGVTTMHVVVQPPST 97 (117)
Q Consensus 73 ~~~i~~g~~~~~~~tmhlv~~~~~~ 97 (117)
+|+|.++ .++||+.+..+.
T Consensus 85 ~y~i~~g------~~i~lv~~~~~~ 103 (107)
T 1x1m_A 85 FYGIQPG------STVHVLRKSWSG 103 (107)
T ss_dssp HHTCCTT------CEEEEEESSCCS
T ss_pred HcCCCCC------CEEEEEeCCCCC
Confidence 9999977 378998887654
No 55
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.2e-17 Score=109.91 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=63.4
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..+.|+|+. +|+.+. +++++++||.+||++|++. .++| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 27 m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~g------ 91 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKA-----NGIP--VANQRLIYSGKILKDDQTVESYHIQDG------ 91 (101)
T ss_dssp --CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHH-----HSCC--STTCCEEETTEECCTTSBTTTTTCCTT------
T ss_pred cEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--hHHEEEEECCEECCCcCcHHHCCCCCC------
Confidence 457788886 899998 9999999999999999644 5777 799999999999999999999999977
Q ss_pred EEEEEEeCC
Q 033555 86 TTMHVVVQP 94 (117)
Q Consensus 86 ~tmhlv~~~ 94 (117)
.++||+.+.
T Consensus 92 ~tI~lv~~~ 100 (101)
T 3m63_B 92 HSVHLVKSQ 100 (101)
T ss_dssp EEEEECCCC
T ss_pred CEEEEEeCC
Confidence 488888764
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=7.7e-17 Score=107.83 Aligned_cols=83 Identities=7% Similarity=0.071 Sum_probs=69.3
Q ss_pred CCCCceeEEEEEeCCC----ceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCC-CcccccCC
Q 033555 2 ASVQDQLEIKFRLTDG----SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENN-RTLGECRS 76 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G----~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i 76 (117)
+++...++|+|++.+| +.+. +++++++||.+||++|+. ..++| +++|||+|+||.|+|+ .||++|+|
T Consensus 2 ~~~~~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI 73 (102)
T 1v5o_A 2 SSGSSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCEL-----ESGVP--AEEAQIVYMEQLLTDDHCSLGSYGL 73 (102)
T ss_dssp CCCSCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHH-----HTCCC--GGGBCEEETTEEECCSSSBHHHHTC
T ss_pred CCCCCeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHH-----HHCcC--hHHeEEEECCEECCCCcccHHHCCC
Confidence 3455678999998755 6887 999999999999999954 46787 7999999999999887 69999999
Q ss_pred CCCCCCCCeEEEEEEeCCCCch
Q 033555 77 PLCDIPGGVTTMHVVVQPPSTE 98 (117)
Q Consensus 77 ~~g~~~~~~~tmhlv~~~~~~~ 98 (117)
.+| .++||+.+..+..
T Consensus 74 ~~g------~~l~l~~~~~gg~ 89 (102)
T 1v5o_A 74 KDG------DMVVLLQKDNVGL 89 (102)
T ss_dssp CTT------EEEEECBCCCCCC
T ss_pred CCC------CEEEEEECCCCCC
Confidence 977 4789988876653
No 57
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=8.6e-17 Score=108.94 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=69.7
Q ss_pred ceeEEEEEeC---CCceeeeeecCC-CCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCC
Q 033555 6 DQLEIKFRLT---DGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDI 81 (117)
Q Consensus 6 ~~~~i~~~~~---~G~~~~~l~~~~-~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 81 (117)
..++|+|++. +|+.+. +++++ ++||.+||++|+. ..++| +++|||+|+|++|+|+.+|++|+|.+|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~-----~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g-- 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAG-----EIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG-- 95 (111)
T ss_dssp SCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHH-----HTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS--
T ss_pred CcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHH-----HHCCC--HHHeEEEECCEECCCCCcHHHCCCCCC--
Confidence 4789999998 899998 99998 9999999999954 46787 799999999999999999999999977
Q ss_pred CCCeEEEEEEeCCCCc
Q 033555 82 PGGVTTMHVVVQPPST 97 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~~ 97 (117)
.++||+++..+.
T Consensus 96 ----~~l~l~~r~~GG 107 (111)
T 1we6_A 96 ----EILTLSLRERSG 107 (111)
T ss_dssp ----CEEEEECSSCCS
T ss_pred ----CEEEEEEEcCCC
Confidence 388999998875
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=107.41 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=68.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
..++|+|+..+|+.+. +++++++||.+||++|++. .++| +++|||+|+||.|+|+.+|++|++.++
T Consensus 34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g------ 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 99 (111)
T ss_dssp SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCSSCBTTTTTCCTT------
T ss_pred CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4799999999999998 9999999999999999654 5677 799999999999999999999999977
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
.++||+++..+
T Consensus 100 s~I~l~~rl~G 110 (111)
T 2ojr_A 100 STLHLVLRLRG 110 (111)
T ss_dssp CEEEEEECCCC
T ss_pred CEEEEEEeCCC
Confidence 38899998765
No 59
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=6.7e-17 Score=107.43 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=67.2
Q ss_pred CCCCceeEEEEEeCCCcee-eeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDI-GPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~-~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+|+++.++|+|+. .|+.+ . +++++++||.+||++|+ +..++| +++|||||.||+|+|+ +|++|+|..+.
T Consensus 2 ~~~~~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~-----~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~ 71 (96)
T 1wgg_A 2 SSGSSGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLF-----ALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGM 71 (96)
T ss_dssp CSCCCEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHH-----HHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSC
T ss_pred CCCCcEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCC
Confidence 5778899999996 68888 6 89999999999999995 446787 7999999999999999 99999999773
Q ss_pred CCCCeEEEEEEeCCC
Q 033555 81 IPGGVTTMHVVVQPP 95 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~ 95 (117)
++||+..+.
T Consensus 72 ------~i~l~~~~~ 80 (96)
T 1wgg_A 72 ------TVLMMGSAD 80 (96)
T ss_dssp ------EEECCCCCC
T ss_pred ------EEEEEecch
Confidence 777776654
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-16 Score=108.47 Aligned_cols=77 Identities=26% Similarity=0.374 Sum_probs=69.0
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
...|++++.+|+++. +++++++||.+||++|+. ..++| +++|||+|+||.|+|+.+|++|+|.++ .
T Consensus 9 ~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------s 74 (114)
T 2kdi_A 9 EFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQD-----KEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRE------S 74 (114)
T ss_dssp CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTCBTTTTTCCSS------C
T ss_pred cEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEECCEECCCCCcHHHCCCCCC------C
Confidence 568999999999999 999999999999999964 46787 799999999999999999999999977 3
Q ss_pred EEEEEeCCCCc
Q 033555 87 TMHVVVQPPST 97 (117)
Q Consensus 87 tmhlv~~~~~~ 97 (117)
++||+++..+.
T Consensus 75 tI~l~~~~~GG 85 (114)
T 2kdi_A 75 TLHLVLRLRGG 85 (114)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEEcCCC
Confidence 78999998764
No 61
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=103.68 Aligned_cols=81 Identities=17% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCCCceeEEEEEeCCCceeeeeecCCC-----CcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCC-CCcccccC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFPAA-----TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILEN-NRTLGECR 75 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~~~-----~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D-~~tL~~~~ 75 (117)
++.++.+.|+|+. .|+.+. ++++++ +||.+||++|+. ..++| +++|||||.||.|+| +.+|++|+
T Consensus 2 ~~~~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~-----~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~ 72 (92)
T 1wxv_A 2 SSGSSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEE-----VIGVP--QSFQKLIFKGKSLKEMETPLSALG 72 (92)
T ss_dssp CCCCSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHH-----HTCCC--TTTCEEEETTEEECCSSSBHHHHT
T ss_pred CCCCCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHH-----HHCcC--HHHEEEEECCeecCCCcccHHHCC
Confidence 4566789999998 588887 999995 999999999964 46787 799999999999998 56899999
Q ss_pred CCCCCCCCCeEEEEEEeCCCCc
Q 033555 76 SPLCDIPGGVTTMHVVVQPPST 97 (117)
Q Consensus 76 i~~g~~~~~~~tmhlv~~~~~~ 97 (117)
|..| .++||+.++..+
T Consensus 73 i~~g------~~i~l~~~~~~~ 88 (92)
T 1wxv_A 73 IQDG------CRVMLIGKKNSG 88 (92)
T ss_dssp CCSS------EEEEEESCCSCS
T ss_pred CCCC------CEEEEEecCCCC
Confidence 9876 478888776554
No 62
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.67 E-value=1.6e-16 Score=104.15 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=67.9
Q ss_pred CCCCceeEEEEEeCCCceeeee-ecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE---ecCeecCCCCcccccCCC
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSP 77 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l-~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~ 77 (117)
+++++.++|+|+. .|+++. + ++++++||.+||++|+ +..++| +++|||+ |.|++|+|+.+|++|+|.
T Consensus 2 ~~~~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~-----~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~ 72 (90)
T 1v5t_A 2 SSGSSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLK-----TLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLK 72 (90)
T ss_dssp CCCCCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHH-----HHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCC
T ss_pred CCCCceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHH-----HHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCC
Confidence 4567789999996 788888 9 9999999999999995 446787 7999999 999999999999999999
Q ss_pred CCCCCCCeEEEEEEeCCC
Q 033555 78 LCDIPGGVTTMHVVVQPP 95 (117)
Q Consensus 78 ~g~~~~~~~tmhlv~~~~ 95 (117)
.| .++||+..+.
T Consensus 73 ~g------~~l~l~~~~~ 84 (90)
T 1v5t_A 73 PN------TKIMMMGTRE 84 (90)
T ss_dssp TT------EEEEEECCCS
T ss_pred CC------CEEEEEecCc
Confidence 77 4778776544
No 63
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.67 E-value=9.9e-17 Score=109.36 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=69.2
Q ss_pred CceeEEEEEeC----------CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCccccc
Q 033555 5 QDQLEIKFRLT----------DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 5 ~~~~~i~~~~~----------~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
...++|+|+.. +|+++. +++++++||.+||++|+. ..++| +++|||+|+|++|+|+.+|++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~QrL~~~Gk~L~D~~tL~~y 94 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHE-----ATGMP--AGKQKLQYEGIFIKDSNSLAYY 94 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHH-----HSSCC--TTTEEEEETTEEECTTSBHHHH
T ss_pred CCCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHH-----HHCCC--hHHEEEEECCEECCCCCCHHHC
Confidence 34788888886 477888 999999999999999964 45787 7999999999999999999999
Q ss_pred CCCCCCCCCCeEEEEEEeCCCCch
Q 033555 75 RSPLCDIPGGVTTMHVVVQPPSTE 98 (117)
Q Consensus 75 ~i~~g~~~~~~~tmhlv~~~~~~~ 98 (117)
+|.+| .++||+++..+..
T Consensus 95 ~i~~g------~~i~lv~rl~GGk 112 (115)
T 1we7_A 95 NMASG------AVIHLALKERSGP 112 (115)
T ss_dssp TCCSS------CEEEEEECCCSCC
T ss_pred CCCCC------CEEEEEEEcCCCC
Confidence 99876 4889999988753
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=113.16 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=69.5
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCC
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
+....++|+|++.+|+++. +++++++||.+||++|+. ..++| +++|||+|+|+.|+|+.+|++|+|..+
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gip--~~~QrL~~~g~~L~d~~tL~~~~i~~~--- 84 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 84 (172)
T ss_dssp ---CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGEEEEETTEECCTTCBTGGGTCCTT---
T ss_pred CCCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEECCccccccCCHhHcCCccc---
Confidence 3456899999999999998 999999999999999954 46787 799999999999999999999999977
Q ss_pred CCeEEEEEEeCCCCc
Q 033555 83 GGVTTMHVVVQPPST 97 (117)
Q Consensus 83 ~~~~tmhlv~~~~~~ 97 (117)
.++||+++..+.
T Consensus 85 ---~~l~l~~~~~gg 96 (172)
T 3u30_A 85 ---STLHLVLRLRGG 96 (172)
T ss_dssp ---CEEEEEECCCCC
T ss_pred ---ceeeeeeccccc
Confidence 378888887653
No 65
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=2.1e-16 Score=117.06 Aligned_cols=77 Identities=26% Similarity=0.345 Sum_probs=69.6
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.++|+|++.+|+++. +++++++||.+||++|+. ..++| +++|||||+|+.|+|+.+|++|+|.++ .
T Consensus 105 eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~-----~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~g------s 170 (189)
T 3q3f_A 105 GGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 170 (189)
T ss_dssp CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGCCEEETTEECCTTCBGGGGTCCTT------C
T ss_pred ceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHh-----ccCCC--HHHEEEEECCEECCCCCCHHHCCCCCC------C
Confidence 489999999999998 999999999999999964 46787 799999999999999999999999977 3
Q ss_pred EEEEEeCCCCc
Q 033555 87 TMHVVVQPPST 97 (117)
Q Consensus 87 tmhlv~~~~~~ 97 (117)
++||+++..+.
T Consensus 171 tI~LvlrlrGG 181 (189)
T 3q3f_A 171 TLHLVLRLRGG 181 (189)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEEEEcCCC
Confidence 88999998774
No 66
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=4.8e-16 Score=105.65 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=61.3
Q ss_pred eeEEEEEeCCC--ceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCC-CCCCCCC
Q 033555 7 QLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS-PLCDIPG 83 (117)
Q Consensus 7 ~~~i~~~~~~G--~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~~~ 83 (117)
.+.|+|+...+ ..+. ++++|++||++||++|. +.+++| +++|||||+|++|+|+.||++|+| ..|+
T Consensus 24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~-----~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~--- 92 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVF-----LDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGD--- 92 (105)
T ss_dssp EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHH-----HHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTC---
T ss_pred EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHH-----HHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCC---
Confidence 45666666654 6787 99999999999999995 457888 799999999999999999999999 4663
Q ss_pred CeEEEEEEeCC
Q 033555 84 GVTTMHVVVQP 94 (117)
Q Consensus 84 ~~~tmhlv~~~ 94 (117)
++||++-.
T Consensus 93 ---t~hL~l~~ 100 (105)
T 4dbg_A 93 ---SAYLYLLS 100 (105)
T ss_dssp ---EEEEEECC
T ss_pred ---EEEEEEEe
Confidence 77877643
No 67
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.64 E-value=1.4e-17 Score=115.57 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=0.0
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+++. +++++++||.+||++|+ +..++| +++|||+|+|+.|+|+.||++|+|.+| .+
T Consensus 1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~-----~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------st 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHH-----HHhCcC--hHHEEEEECCEECCCCCchhhhccCCC------CE
Confidence 46888999999998 99999999999999995 446787 799999999999999999999999977 48
Q ss_pred EEEEeCCCCc
Q 033555 88 MHVVVQPPST 97 (117)
Q Consensus 88 mhlv~~~~~~ 97 (117)
+||+++..+.
T Consensus 67 i~l~~rl~GG 76 (128)
T 3u5e_m 67 LHLVLRLRGG 76 (128)
T ss_dssp ----------
T ss_pred EEEEEEcCCC
Confidence 8999998875
No 68
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=8.1e-16 Score=99.85 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=59.2
Q ss_pred EEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEE
Q 033555 12 FRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVV 91 (117)
Q Consensus 12 ~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv 91 (117)
++..+|+.+. +++++++||.+||++|++ ..++| +++|||+|+||.|+|+.+|++|+|.+| .+++|+
T Consensus 16 ~~~~~g~~~~-l~v~~~~TV~~LK~~I~~-----~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l~ 81 (85)
T 2kd0_A 16 TVKFGGKSIP-LSVSPDCTVKDLKSQLQP-----ITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLMLM 81 (85)
T ss_dssp EEEETTEEEE-EEECTTSBHHHHHHHHHH-----HHCCC--TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEEE
T ss_pred EEEECCEEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEEE
Confidence 4445899998 999999999999999964 45787 799999999999999999999999977 477877
Q ss_pred eCC
Q 033555 92 VQP 94 (117)
Q Consensus 92 ~~~ 94 (117)
..+
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 653
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.63 E-value=6e-16 Score=111.31 Aligned_cols=76 Identities=26% Similarity=0.385 Sum_probs=65.0
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.+.|.+++.+|+++. +++++++||.+||++|+. .+++| +++|||+|+|+.|+|+.+|++|+|..| .
T Consensus 96 g~~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g------~ 161 (172)
T 3u30_A 96 GMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 161 (172)
T ss_dssp CEEEEEEESSCCEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGCCEEETTEECCTTSBSGGGTCCTT------C
T ss_pred cccceeecccCccee-EEecCCCCHHHHHHHHHH-----HhCCC--ceeEEEEECCccCCCCCcHHHhCCCCC------C
Confidence 467888889999998 999999999999999954 46787 799999999999999999999999977 3
Q ss_pred EEEEEeCCCC
Q 033555 87 TMHVVVQPPS 96 (117)
Q Consensus 87 tmhlv~~~~~ 96 (117)
++||+++..+
T Consensus 162 tl~l~~rlrg 171 (172)
T 3u30_A 162 TLHLVLRLRG 171 (172)
T ss_dssp EEEECC----
T ss_pred EEEEEEecCC
Confidence 8899988765
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=1.1e-15 Score=108.21 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=65.7
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE-e-cCeecCCCCcccccCCCCCCCCCCe
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI-S-AGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI-~-~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
++|+|++.+|+++. +++++++||.+||++|+. ..++| +++|||+ | +|+.|+|+.+|++|+|..|
T Consensus 3 m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~-----~~gip--~~~QrL~~~~~g~~L~d~~tL~~y~i~~~------ 68 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQ-----KIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPG------ 68 (159)
T ss_dssp CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHH-----HHCCC--GGGEEEEEETTCCBCCTTSCGGGGTCCTT------
T ss_pred eEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHH-----HhCCC--HHHEEEEEcCCCCCCCCCCCHHHcCCCCC------
Confidence 78999999999998 999999999999999954 46787 7999999 9 8999999999999999977
Q ss_pred EEEEEEeCC
Q 033555 86 TTMHVVVQP 94 (117)
Q Consensus 86 ~tmhlv~~~ 94 (117)
.++||+++.
T Consensus 69 ~~l~l~~~~ 77 (159)
T 3rt3_B 69 STVLLVVDK 77 (159)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEccC
Confidence 378888883
No 71
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.63 E-value=3.2e-17 Score=117.68 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=0.0
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+++. +++++++||.+||++|+ +..++| +++|||||+|++|+|+.+|++|+|.+| .+
T Consensus 1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~-----~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------st 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------ST 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHH-----HHhCCC--HHHEEEEECCEEccccCcHHHcCCCCC------CE
Confidence 47889999999998 99999999999999995 456787 799999999999999999999999976 48
Q ss_pred EEEEeCCCCchh
Q 033555 88 MHVVVQPPSTEK 99 (117)
Q Consensus 88 mhlv~~~~~~~~ 99 (117)
+||++++.+..+
T Consensus 67 L~Lvlrl~GGgK 78 (152)
T 3u5c_f 67 LHLVLRLRGGGK 78 (152)
T ss_dssp ------------
T ss_pred EEEEeeccCCCc
Confidence 899999988633
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.62 E-value=2.1e-15 Score=105.05 Aligned_cols=76 Identities=25% Similarity=0.378 Sum_probs=67.8
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.+.|+++..+|+++. +++++++||.+||++|+.. .++| +++|||+|.||.|+|+.+|++|++.+| .
T Consensus 76 ~~~i~Vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~------~ 141 (152)
T 3b08_A 76 GMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 141 (152)
T ss_dssp CEEEEEEESSSCEEE-EEECTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred ccceeeeecCCCEEE-EEeCCCCcHHHHHHHHHHH-----hCcC--hhhEEEEECCEECCCCCCHHHcCCCCC------C
Confidence 467888999999998 9999999999999999644 5777 799999999999999999999999977 3
Q ss_pred EEEEEeCCCC
Q 033555 87 TMHVVVQPPS 96 (117)
Q Consensus 87 tmhlv~~~~~ 96 (117)
++||+++..|
T Consensus 142 ~i~l~~r~~G 151 (152)
T 3b08_A 142 TLHLVLRLRG 151 (152)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEecCC
Confidence 7899998876
No 73
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.62 E-value=1.3e-15 Score=99.62 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=60.0
Q ss_pred eEEEEEe--CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe-------cCeecCCCCcccccCCCC
Q 033555 8 LEIKFRL--TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-------AGKILENNRTLGECRSPL 78 (117)
Q Consensus 8 ~~i~~~~--~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-------~Gk~L~D~~tL~~~~i~~ 78 (117)
|.|.|.. ..++..+ ..|++++||.+||++| ++.+|+| +++||||| .|++|+|+.+|++|+|.+
T Consensus 3 V~v~iths~~~~~~~E-~r~~~s~TI~~lK~ki-----~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~ 74 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPE-KRYGLAQTIESIKENV-----FTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRD 74 (86)
T ss_dssp EEEEEEETTCSCCEEE-EEEETTSBHHHHHHHH-----HTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCT
T ss_pred EEEEEEEcCCCCeEEE-EEcCccCcHHHHHHHH-----HHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCC
Confidence 4444443 3444556 8999999999999999 5668898 79999996 699999999999999998
Q ss_pred CCCCCCeEEEEEEeCCC
Q 033555 79 CDIPGGVTTMHVVVQPP 95 (117)
Q Consensus 79 g~~~~~~~tmhlv~~~~ 95 (117)
| .++||+-..+
T Consensus 75 g------~~ihlvd~~P 85 (86)
T 4b6w_A 75 E------FVIHVVDLQP 85 (86)
T ss_dssp T------CEEEEEECCC
T ss_pred C------CEEEEEeCCC
Confidence 8 4889886543
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.60 E-value=3.3e-15 Score=104.05 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=66.2
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+.+. +++++++||.+||++|++. .++| +++|||+|+|+.|+|+.+|++|++.+|+ +
T Consensus 1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCeECcCcccHHHhccCCCC------e
Confidence 47899999999998 9999999999999999644 5777 7999999999999999999999999773 7
Q ss_pred EEEEeCCCC
Q 033555 88 MHVVVQPPS 96 (117)
Q Consensus 88 mhlv~~~~~ 96 (117)
+|++.+..+
T Consensus 67 l~l~~~~~~ 75 (152)
T 3b08_A 67 LHLVLRLRG 75 (152)
T ss_dssp EEEEECCTT
T ss_pred eEEEeeccc
Confidence 888887655
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=8.4e-16 Score=101.75 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=63.2
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
.++.++|+|+. .|+++. +++++++||.+||++|+ +..++| +++|||+|.||+|+| .+|++|+|..+
T Consensus 14 ~~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~-----~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g---- 79 (95)
T 1v86_A 14 GKELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIH-----SITGLP--PAMQKVMYKGLVPED-KTLREIKVTSG---- 79 (95)
T ss_dssp CCCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHH-----HHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTT----
T ss_pred CCceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCC----
Confidence 34578888884 688888 99999999999999995 446787 799999999999955 59999999876
Q ss_pred CeEEEEEEeCCC
Q 033555 84 GVTTMHVVVQPP 95 (117)
Q Consensus 84 ~~~tmhlv~~~~ 95 (117)
.++||+....
T Consensus 80 --~~i~lv~~~~ 89 (95)
T 1v86_A 80 --AKIMVVGSTI 89 (95)
T ss_dssp --EEEEECCSSC
T ss_pred --CEEEEEeccc
Confidence 4788876543
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.59 E-value=3.1e-15 Score=120.26 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=70.6
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
...+.|+||+.+|+++. +++++++||.+||++|..+|. .+++| +++|||||.||+|+|+++|++|+|..++
T Consensus 5 ~~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 34689999999999998 999999999999999987642 45677 7999999999999999999999999774
Q ss_pred eEEEEEEeCCCCc
Q 033555 85 VTTMHVVVQPPST 97 (117)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (117)
+++|++.++.+.
T Consensus 76 -tIv~lv~k~~~~ 87 (368)
T 1oqy_A 76 -FVVVMVTKTKAG 87 (368)
T ss_dssp -CEEEEEECCCSS
T ss_pred -EEEEEEecCCCC
Confidence 355888887653
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=96.89 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=57.8
Q ss_pred CceeEEEEEeCCCceee-ee-ecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec--CeecCCCCcccccCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIG-PK-SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GKILENNRTLGECRSPLC 79 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~-~l-~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~--Gk~L~D~~tL~~~~i~~g 79 (117)
...+.|+|++..|+.+. .+ +++|++||.+||++|+.. .+++| +++|||+|. ||+|+|+.||++|+|..+
T Consensus 8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~----~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~ 80 (88)
T 2dzj_A 8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKT----HPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTT 80 (88)
T ss_dssp CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHH----CSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSE
T ss_pred eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHH----hcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCC
Confidence 34588999999887752 26 899999999999999642 34666 799999987 999999999999999876
No 78
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=6.5e-15 Score=98.46 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCCCceeEEEEEeCCC--ceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCe---e----cCCCCccc
Q 033555 2 ASVQDQLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK---I----LENNRTLG 72 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G--~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk---~----L~D~~tL~ 72 (117)
+-+++.|.|.|..... ..++ +++++++||++||++| ++.+|+| +++|||||.|+ . ++|+++|+
T Consensus 9 ~~~~~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kI-----e~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~ 80 (97)
T 2kj6_A 9 SHGDDSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKL-----WKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLG 80 (97)
T ss_dssp CCCCCCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHH-----HHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHH
T ss_pred cCCCceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHH-----HHHHCcC--HHHeEEEEecCCCcccceecCCcCCHH
Confidence 3467788999987544 4677 9999999999999999 4567898 79999999984 3 58999999
Q ss_pred ccCCCCCCCCCCeEEEEEEe
Q 033555 73 ECRSPLCDIPGGVTTMHVVV 92 (117)
Q Consensus 73 ~~~i~~g~~~~~~~tmhlv~ 92 (117)
+|+|..|. ++||+-
T Consensus 81 ~Y~I~~g~------~Ihlvd 94 (97)
T 2kj6_A 81 FFSPFDGF------RLHIID 94 (97)
T ss_dssp HHCCCSCC------EEEEEE
T ss_pred HCCCCCCC------EEEEEe
Confidence 99999873 788764
No 79
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.56 E-value=8.4e-15 Score=97.47 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=61.1
Q ss_pred CceeEEEEEeCCC--ceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec--Ce---e-cCCCCcccccCC
Q 033555 5 QDQLEIKFRLTDG--SDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA--GK---I-LENNRTLGECRS 76 (117)
Q Consensus 5 ~~~~~i~~~~~~G--~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~--Gk---~-L~D~~tL~~~~i 76 (117)
++.|.|+|+...+ +.++ +++++++||++||++| ++.+|+| +++|||+|. |+ . ++|+.+|++|+|
T Consensus 13 ~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI-----~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i 84 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKL-----EILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYAN 84 (95)
T ss_dssp CCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHH-----HHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCC
T ss_pred CCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHH-----HHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCc
Confidence 4578888887655 3777 9999999999999999 4567898 799999998 55 3 489999999999
Q ss_pred CCCCCCCCeEEEEEE
Q 033555 77 PLCDIPGGVTTMHVV 91 (117)
Q Consensus 77 ~~g~~~~~~~tmhlv 91 (117)
..|. ++||+
T Consensus 85 ~~gs------tihlv 93 (95)
T 2kjr_A 85 SDGL------RLHVV 93 (95)
T ss_dssp SSSC------EEEEE
T ss_pred CCCC------EEEEE
Confidence 9873 78876
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=2.1e-14 Score=94.75 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCCCceeEEEEEeCCCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC---ee----cCCCCcccc
Q 033555 2 ASVQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KI----LENNRTLGE 73 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---k~----L~D~~tL~~ 73 (117)
++.+..+.|+|+...+. .++ +++++++||.+||++|+ +.+++| +++|||+|.| +. |+|+.+|++
T Consensus 2 ~~~~~~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~-----~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~ 73 (95)
T 1v6e_A 2 SSGSSGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLE-----LVVGSP--ASCMELELYGADDKFYSKLDQEDALLGS 73 (95)
T ss_dssp CSCCCCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHH-----HHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTS
T ss_pred CCCCcEEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHH-----HHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhH
Confidence 56778899988875443 577 89999999999999995 557888 7999999987 43 589999999
Q ss_pred cCCCCCCCCCCeEEEEEEe
Q 033555 74 CRSPLCDIPGGVTTMHVVV 92 (117)
Q Consensus 74 ~~i~~g~~~~~~~tmhlv~ 92 (117)
|+|..|. ++||+-
T Consensus 74 y~i~~g~------~l~v~d 86 (95)
T 1v6e_A 74 YPVDDGC------RIHVID 86 (95)
T ss_dssp SSCCTTC------EEEEBC
T ss_pred CCCCCCC------EEEEEE
Confidence 9999773 788765
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.7e-15 Score=98.74 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=64.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe--cCeecCCCCcccccCCCCCCCCCCe
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.+..+..+|+++. +++++++||.+||++| ++.+++| +++|||+| .|+ |+|+.+|++|+|+.|
T Consensus 9 m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I-----~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~g------ 73 (100)
T 2dzm_A 9 MLDFRVEYRDRNVD-VVLEDTCTVGEIKQIL-----ENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKN------ 73 (100)
T ss_dssp EEEEEEECSSCEEE-EEEETTSBHHHHHHHH-----HHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSE------
T ss_pred eEEEEEEeCCeEEE-EEECCCCcHHHHHHHH-----HHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCC------
Confidence 44455556899998 9999999999999999 4668898 79999997 777 999999999999976
Q ss_pred EEEEEEeCCCCchh
Q 033555 86 TTMHVVVQPPSTEK 99 (117)
Q Consensus 86 ~tmhlv~~~~~~~~ 99 (117)
.+|||++....++.
T Consensus 74 stL~lvl~~~~~~~ 87 (100)
T 2dzm_A 74 NSLYVLTPDLPPPS 87 (100)
T ss_dssp EEEEECCSSSCCCC
T ss_pred CEEEEEecCCCCCc
Confidence 58999998877543
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.54 E-value=1.5e-14 Score=114.03 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=66.4
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
...++|+|++.+|+++. +++++++||.+||++|++ ..++| +++|||||+||+|+|+.+|++|+|.++
T Consensus 231 ~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~-----~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~g----- 297 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQD-----KEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 297 (307)
T ss_dssp CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHH-----HHCCC--GGGCEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred CCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHH-----HHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCC-----
Confidence 35789999999999998 999999999999999954 46787 799999999999999999999999977
Q ss_pred eEEEEEEeCC
Q 033555 85 VTTMHVVVQP 94 (117)
Q Consensus 85 ~~tmhlv~~~ 94 (117)
.++||+++.
T Consensus 298 -stL~LvlRL 306 (307)
T 3ai5_A 298 -STLHLVLRL 306 (307)
T ss_dssp -CEEEEEC--
T ss_pred -CEEEEEEeC
Confidence 378998875
No 83
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.54 E-value=5.1e-16 Score=115.11 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
++|+|++.+|+++. +++++++||.+||++| ++.+++| +++|||||+|++|+|+.||+ .+ .|
T Consensus 1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI-----~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~------ST 61 (189)
T 2xzm_9 1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQI-----SQDMGFE--IDMMTLVNNGFIAPNTELVT-----DD------VT 61 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEE-EEECCcChHHHHHHHH-----HHHhCcC--hhHEEEEecCeECCCCCccc-----CC------CE
Confidence 57899999999998 9999999999999999 5567888 79999999999999999998 33 48
Q ss_pred EEEEeCCCCc
Q 033555 88 MHVVVQPPST 97 (117)
Q Consensus 88 mhlv~~~~~~ 97 (117)
+||++++.+.
T Consensus 62 LhLvlRLrGG 71 (189)
T 2xzm_9 62 YYLSLKLLGG 71 (189)
T ss_dssp ----------
T ss_pred EEEEEecCCC
Confidence 9999998875
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.51 E-value=1.9e-14 Score=97.14 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCCCceeEEEEEeCCCceeeeeecC-CCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCe-----------e----c
Q 033555 2 ASVQDQLEIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-----------I----L 65 (117)
Q Consensus 2 ~~~~~~~~i~~~~~~G~~~~~l~~~-~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk-----------~----L 65 (117)
+++.+.+.|+||..+|+. . ++++ +++||.+||++|. +..++| +++|||+|.|+ . +
T Consensus 2 ~~~~~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~-----~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l 72 (107)
T 1wf9_A 2 SSGSSGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQ-----DQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMA 72 (107)
T ss_dssp CSSCCCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHH-----HHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSC
T ss_pred CCCCCeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHH-----HHhCcC--cccCEEEECCccccccCccccccccccC
Confidence 467778999999999976 4 8999 9999999999995 446777 79999999998 4 5
Q ss_pred CCCCcccccCCCCCCCCCCeEEEEEEeCCC
Q 033555 66 ENNRTLGECRSPLCDIPGGVTTMHVVVQPP 95 (117)
Q Consensus 66 ~D~~tL~~~~i~~g~~~~~~~tmhlv~~~~ 95 (117)
+|+.+|++|+|..|+ ++||+....
T Consensus 73 ~d~~tL~~~gi~~G~------~L~l~~~~~ 96 (107)
T 1wf9_A 73 DPNLRISSLNLAHGS------MVYLAYEGE 96 (107)
T ss_dssp CTTCBGGGTCCCTTC------EEECCCSSC
T ss_pred CCCCCHHHCCCCCCC------EEEEEeCCC
Confidence 899999999999884 788876643
No 85
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=7.5e-14 Score=92.69 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=69.8
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPG 83 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 83 (117)
..+.|+|+++..+|+.+. +.+.+++++..|+++++ +..++| ++++||+|.|+.|++++|+++|++.++|
T Consensus 4 ~~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~-----~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD--- 72 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYC-----ERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED--- 72 (94)
T ss_dssp --CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHH-----HHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred CCCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHH-----HHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence 456899999999999998 99999999999999995 446776 6999999999999999999999999886
Q ss_pred CeEEEEEEeCCCCc
Q 033555 84 GVTTMHVVVQPPST 97 (117)
Q Consensus 84 ~~~tmhlv~~~~~~ 97 (117)
+||++++..+.
T Consensus 73 ---~Idv~~~~~GG 83 (94)
T 2io1_B 73 ---TIDVFQQQTGG 83 (94)
T ss_dssp ---EEEEEECCEES
T ss_pred ---EEEEEEeccCC
Confidence 78988876654
No 86
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=3.2e-13 Score=89.21 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 1 ~~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
|++. .+.|+++..+|+.+. +.+.+++++..|++.+++ ..++| ++++||+|.|+.|.+++|++++++.+||
T Consensus 1 ~~~~--~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~-----~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD 70 (91)
T 2io0_B 1 MAND--HINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED 70 (91)
T ss_dssp ---C--EEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHH-----HTTCC--STTEEEEETTEECCTTCCTTTTTCCTTE
T ss_pred CCCC--eEEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 5554 899999999999998 999999999999999954 45676 6999999999999999999999999885
Q ss_pred CCCCeEEEEEEeCCCCc
Q 033555 81 IPGGVTTMHVVVQPPST 97 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~~~ 97 (117)
+|+++++..+.
T Consensus 71 ------~Idv~~~q~gg 81 (91)
T 2io0_B 71 ------TIDVFQQQTGG 81 (91)
T ss_dssp ------EEEEEECCCCC
T ss_pred ------EEEEEEeccCC
Confidence 78988887664
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.43 E-value=7.8e-13 Score=91.08 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=60.0
Q ss_pred eeEEEEEeCCCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC---ee----cCCCCcccccCCCC
Q 033555 7 QLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG---KI----LENNRTLGECRSPL 78 (117)
Q Consensus 7 ~~~i~~~~~~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~~ 78 (117)
.|.|.|+...+. .++ +++++++||.+||++|+ ...|+| +++|||+|.| +. ++|+.+|++|+|..
T Consensus 6 ~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~-----~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~ 77 (122)
T 1t0y_A 6 VYDLEITTNATDFPME-KKYPAGMSLNDLKKKLE-----LVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRD 77 (122)
T ss_dssp EEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHH-----HHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCS
T ss_pred EEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHH-----HHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCC
Confidence 577777765443 576 89999999999999994 557888 7999999988 43 58999999999997
Q ss_pred CCCCCCeEEEEEEeCC
Q 033555 79 CDIPGGVTTMHVVVQP 94 (117)
Q Consensus 79 g~~~~~~~tmhlv~~~ 94 (117)
| .++||+...
T Consensus 78 g------~~ihvvd~~ 87 (122)
T 1t0y_A 78 G------YRIHAVDVT 87 (122)
T ss_dssp S------EEEEEEECT
T ss_pred C------CEEEEEeCC
Confidence 7 588988643
No 88
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.37 E-value=4.5e-13 Score=105.79 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=62.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE---ecCeecCCCCcccccCCCCCCCC
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI---SAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
+.+.|+|+. +|+.+. +++++++||.+||++|+ +..++| +++|||| |+|++|+|+.+|++|+|+.|.
T Consensus 4 ~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~-----~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~-- 72 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIF-----RKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNF-- 72 (320)
T ss_dssp CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHH-----HHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--C--
T ss_pred ceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHH-----HHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCC--
Confidence 478888886 798998 99999999999999995 457888 7999999 899999999999999999873
Q ss_pred CCeEEEEEEeCCCC
Q 033555 83 GGVTTMHVVVQPPS 96 (117)
Q Consensus 83 ~~~~tmhlv~~~~~ 96 (117)
++||+-.+..
T Consensus 73 ----~l~L~gs~~~ 82 (320)
T 3shq_A 73 ----KLMMVGSTEA 82 (320)
T ss_dssp ----EEEEECCCC-
T ss_pred ----EEEEEccchh
Confidence 6777655443
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.36 E-value=3e-12 Score=84.62 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=67.4
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.+.|+++..+|+.+. +.+.+++++..|++.++. ..++| ++++||+|.|+.|.+++|+++|++.+|+
T Consensus 15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD---- 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 82 (93)
T ss_dssp CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHH-----HhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 46889999989999998 999999999999999954 45676 6899999999999999999999999885
Q ss_pred eEEEEEEeCCCC
Q 033555 85 VTTMHVVVQPPS 96 (117)
Q Consensus 85 ~~tmhlv~~~~~ 96 (117)
+||++++..|
T Consensus 83 --~Idv~~~q~G 92 (93)
T 2d07_B 83 --TIDVFQQQTG 92 (93)
T ss_dssp --EEEEEECC--
T ss_pred --EEEEEeeccC
Confidence 7898887654
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.34 E-value=3.5e-12 Score=80.33 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=62.1
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEE
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTT 87 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 87 (117)
+.|+++..+|+.+. +.+.+++++..|++..++ ..++| ++++||+|.|+.|.+++|++++++.+|+ +
T Consensus 2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD------~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED------T 67 (72)
T ss_dssp EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHH-----HHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred EEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence 68899989999998 999999999999999954 46776 6999999999999999999999999885 6
Q ss_pred EEEE
Q 033555 88 MHVV 91 (117)
Q Consensus 88 mhlv 91 (117)
+|+.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 91
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.33 E-value=3.7e-12 Score=86.07 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=69.3
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|.|+|+..+|+.+. +.+.+++++..|++.++. ..++| ++++||+|.|+.|.+++|+++|++.+||
T Consensus 22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~e-----k~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCE-----RQGLS--MRQIRFRFDGQPINETDTPAQLEMEDED---- 89 (104)
T ss_dssp SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHH-----HHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHH-----HhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 46899999999999998 999999999999999954 45676 6899999999999999999999999885
Q ss_pred eEEEEEEeCCCCc
Q 033555 85 VTTMHVVVQPPST 97 (117)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (117)
+||++++..+.
T Consensus 90 --~Idv~~~q~GG 100 (104)
T 1wz0_A 90 --TIDVFQQQTSG 100 (104)
T ss_dssp --EEEECCCCCCC
T ss_pred --EEEEEEeccCC
Confidence 78988876653
No 92
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.32 E-value=1.9e-12 Score=83.79 Aligned_cols=71 Identities=13% Similarity=0.206 Sum_probs=58.1
Q ss_pred eEEEEEeCCCceeeeee-cCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC--eecC---CCCcccccCCCCCCC
Q 033555 8 LEIKFRLTDGSDIGPKS-FPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG--KILE---NNRTLGECRSPLCDI 81 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~-~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G--k~L~---D~~tL~~~~i~~g~~ 81 (117)
++|+||+.+|+.+ ++ +++++||.+||++|+++ .++| +++|||+|++ |.|+ |+.+|++|||..|+
T Consensus 1 m~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~-----~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~- 70 (86)
T 2kzr_A 1 WRVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAI-----TGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGD- 70 (86)
T ss_dssp CCEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHH-----TCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC-
T ss_pred CEEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHH-----hCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCC-
Confidence 4689999999655 57 99999999999999644 5676 6999999984 8884 78899999999774
Q ss_pred CCCeEEEEEEeC
Q 033555 82 PGGVTTMHVVVQ 93 (117)
Q Consensus 82 ~~~~~tmhlv~~ 93 (117)
++||.-.
T Consensus 71 -----~l~v~~~ 77 (86)
T 2kzr_A 71 -----MLIVEED 77 (86)
T ss_dssp -----EEECCCC
T ss_pred -----EEEEEeC
Confidence 6776654
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.32 E-value=7.3e-12 Score=80.35 Aligned_cols=73 Identities=10% Similarity=0.075 Sum_probs=63.9
Q ss_pred CCceeEEEEEeCCCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCC
Q 033555 4 VQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIP 82 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 82 (117)
+.+.+.|+++..+|+ .+. +.+.+++++..|++..++ ..+++ ++++||+|.|+.|.+++|++++++.+||
T Consensus 4 ~~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~-----~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD-- 73 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEE-----AMGLS--GHKLSFFFDGTKLSGKELPADLGLESGD-- 73 (79)
T ss_dssp CCCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHH-----HHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTC--
T ss_pred CCCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC--
Confidence 346899999999996 888 999999999999999954 45676 6899999999999999999999999886
Q ss_pred CCeEEEEE
Q 033555 83 GGVTTMHV 90 (117)
Q Consensus 83 ~~~~tmhl 90 (117)
+||+
T Consensus 74 ----~Idv 77 (79)
T 3a4r_A 74 ----LIEV 77 (79)
T ss_dssp ----EEEE
T ss_pred ----EEEE
Confidence 6665
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.25 E-value=9.4e-12 Score=84.94 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=68.9
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.|.|+|+..+|+.+. +.+.+++++..|++.++. ..++| ++++||+|.|+.|.+++|+++|++.+||
T Consensus 25 ~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~e-----k~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD----- 91 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCK-----KQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDD----- 91 (110)
T ss_dssp CCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHH-----HHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEE-----
T ss_pred CeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHH-----HhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 4699999999999998 999999999999999954 46776 6899999999999999999999999875
Q ss_pred EEEEEEeCCCCc
Q 033555 86 TTMHVVVQPPST 97 (117)
Q Consensus 86 ~tmhlv~~~~~~ 97 (117)
+|++++...+.
T Consensus 92 -~Idv~~~q~Gg 102 (110)
T 2k8h_A 92 -VIDAMVEQTGG 102 (110)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEcccCc
Confidence 78988887653
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.25 E-value=2e-11 Score=82.86 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=66.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.|.|+++. +|+.+. +.+.+++++..|++.+++ ..+++ ++++||+|.|+.|.+++|++++++.+||
T Consensus 30 ~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~e-----k~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD----- 95 (106)
T 2eke_C 30 THINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND----- 95 (106)
T ss_dssp SEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHH-----HHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTE-----
T ss_pred CeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHH-----HhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCC-----
Confidence 579999999 999998 999999999999999954 45676 6899999999999999999999999885
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
+|+++++..|
T Consensus 96 -~Idv~~~q~G 105 (106)
T 2eke_C 96 -IIEAHREQIG 105 (106)
T ss_dssp -EEEEEECC--
T ss_pred -EEEEEeeccc
Confidence 7888887654
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=2e-09 Score=70.81 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=58.6
Q ss_pred ceeEEEEEe---CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC------ee-c-CCCCccccc
Q 033555 6 DQLEIKFRL---TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG------KI-L-ENNRTLGEC 74 (117)
Q Consensus 6 ~~~~i~~~~---~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G------k~-L-~D~~tL~~~ 74 (117)
..+.|+|+. .+|..++ ..+++++||.+||.+|++ ..++| +..|||.|.+ .+ | +|..+|+.|
T Consensus 8 ~~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~-----~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSR-----LLKVP--VSELLLSYESSKMPGREIELENDLQPLQFY 79 (97)
T ss_dssp CEEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHT-----TTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGG
T ss_pred ccEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHH-----HHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhc
Confidence 367777765 4677887 899999999999999954 45777 7999999973 22 4 688899999
Q ss_pred CCCCCCCCCCeEEEEEEeC
Q 033555 75 RSPLCDIPGGVTTMHVVVQ 93 (117)
Q Consensus 75 ~i~~g~~~~~~~tmhlv~~ 93 (117)
++.+|+ ++||...
T Consensus 80 ~i~~G~------~I~V~d~ 92 (97)
T 1wjn_A 80 SVENGD------CLLVRWS 92 (97)
T ss_dssp TCCTTC------EEEEECC
T ss_pred CCCCCC------EEEEEec
Confidence 999885 7787664
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.90 E-value=7.2e-09 Score=71.20 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=65.1
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.|.|+|+..+|..+. |.+.+++++..|++..+++ .+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 39 ~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er-----~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD----- 105 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQR-----QGVP--MNSLRFLFEGQRIADNHTPKELGMEEED----- 105 (115)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHH-----HTCC--TTSEEEEETTEECCTTCCTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHH-----hCCC--hhhEEEEECCeECCCCCCHHHcCCCCCC-----
Confidence 5788888888999988 9999999999999999644 4665 7999999999999999999999999886
Q ss_pred EEEEEEeCC
Q 033555 86 TTMHVVVQP 94 (117)
Q Consensus 86 ~tmhlv~~~ 94 (117)
+|++.++-
T Consensus 106 -~IdV~~~Q 113 (115)
T 3kyd_D 106 -VIEVYQEQ 113 (115)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEeec
Confidence 67776653
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=1.7e-08 Score=75.14 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=69.5
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|.|+|+ .+|..+. +.+.+++++..|++..+ ++.++| ++++||+|.|+.|.+++|.+++++.+||
T Consensus 27 ~~~I~LkV~-~~g~~v~-fkIk~~t~l~kL~~ay~-----er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD---- 93 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 93 (200)
T ss_dssp CCCEEEEEE-CSSCEEE-EEECTTSCTHHHHHHHH-----HHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEe-cCCCEEE-EEEecCCHHHHHHHHHH-----HHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 346888887 4898888 99999999999999995 446776 7999999999999999999999999885
Q ss_pred eEEEEEEeCCCCchhh
Q 033555 85 VTTMHVVVQPPSTEKE 100 (117)
Q Consensus 85 ~~tmhlv~~~~~~~~~ 100 (117)
+|+++++..+..++
T Consensus 94 --~Idv~~~q~gg~kd 107 (200)
T 3pge_A 94 --IIEAHREQIGGGGE 107 (200)
T ss_dssp --EEEEEECCSCCC-C
T ss_pred --EEEEEeccCcCcCc
Confidence 78999988886554
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.64 E-value=5.9e-08 Score=72.22 Aligned_cols=79 Identities=11% Similarity=0.151 Sum_probs=68.2
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|.|+|+ .+|..+. |.+.+++++..|++..++ ..+++ +.++||+|.|+.|.+++|.+++++.+||
T Consensus 55 ~e~InLKVk-~dG~eV~-FKIKrtTpL~KLmeAYcE-----RqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGD---- 121 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIF-FKIKKTTPLRRLMEAFAK-----RQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDND---- 121 (207)
T ss_dssp CCEEEEEEE-CSSCEEE-EEEETTSCTHHHHHHHHH-----HTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred CCcEEEEEe-cCCCEEE-EEEccCChHHHHHHHHHH-----HhCCC--cccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence 346888887 4899988 999999999999999954 45676 6999999999999999999999999885
Q ss_pred eEEEEEEeCCCCch
Q 033555 85 VTTMHVVVQPPSTE 98 (117)
Q Consensus 85 ~~tmhlv~~~~~~~ 98 (117)
+|+++++..+.-
T Consensus 122 --tIDV~leQ~GG~ 133 (207)
T 3tix_A 122 --IIEAHREQIGGL 133 (207)
T ss_dssp --EEEECCCCCTTG
T ss_pred --EEEEEEeccCCC
Confidence 789888887753
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.37 E-value=8.3e-07 Score=58.90 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=38.8
Q ss_pred eCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecC
Q 033555 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILE 66 (117)
Q Consensus 14 ~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~ 66 (117)
+.++..+. +.+.++.||..+|++|. +.+|+| +++|||||.||.|.
T Consensus 20 ~~~a~~h~-v~I~~~etv~~~ke~V~-----eqTgIp--~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 20 LQQMTAHK-IYIHSYNTATIFHELVY-----KQTKII--SSNQELIYEGRRLV 64 (94)
T ss_dssp TTTTEEEE-EEEETTCBHHHHHHHHH-----HHHCCC--GGGEEEEETTEEEC
T ss_pred cccceEEE-EEeccchHHHHHHHHHH-----HHhCCC--HHHHHHHhCCCccc
Confidence 45677777 99999999999999994 557898 79999999999876
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.30 E-value=8.1e-08 Score=72.37 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=0.5
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|.|+| ..+|..+. |.+.+++....|++..+ +..+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 19 ~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYc-----ERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHH-----HHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 35678888 66888888 99999999999999984 456776 7999999999999999999999999886
Q ss_pred eEEEEEEeCCCCc
Q 033555 85 VTTMHVVVQPPST 97 (117)
Q Consensus 85 ~~tmhlv~~~~~~ 97 (117)
+|+++++..|.
T Consensus 86 --tIDV~leQ~GG 96 (227)
T 3v7o_A 86 --IIEAHREQIGG 96 (227)
T ss_dssp ------------C
T ss_pred --EEEEEecccCC
Confidence 67888777664
No 102
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.06 E-value=1.2e-05 Score=59.61 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=65.2
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|.||++. +|+.+. +.+..++....|++..+ ++.++| ++++||+|.|+.+.+++|..++.+.++|
T Consensus 19 ~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~-----~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d---- 85 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (209)
T ss_dssp CSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHH-----HHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHH-----HhhCCC--hheEEEEECCEeccCCCChHHhhhcccc----
Confidence 4578888886 777877 99999999999999995 446776 7999999999999999999999998775
Q ss_pred eEEEEEEeCCCC
Q 033555 85 VTTMHVVVQPPS 96 (117)
Q Consensus 85 ~~tmhlv~~~~~ 96 (117)
+|++..+..+
T Consensus 86 --~I~~~~eq~G 95 (209)
T 3uf8_A 86 --IIEAHREQIG 95 (209)
T ss_dssp --EEEEECSCTT
T ss_pred --cchhhccccc
Confidence 6777777665
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-05 Score=51.97 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=58.1
Q ss_pred CCceeEEEEEeCCCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 4 VQDQLEIKFRLTDGS-DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
..+.|.|+++-.+|. .+. +.+.++++...|.+..+.+ .+++ ++.+||+|.|+.|..++|.+++++.+||
T Consensus 22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~-----~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEA-----MGLS--GRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHH-----TTCS--SSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHH-----HCCC--cccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 346788888888885 677 8999999999999888654 3454 6899999999999999999999999886
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.01 E-value=5.7e-05 Score=48.62 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=52.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.+-+|-....++. +.+.++++|.+|=...+.+ .+||. ...+||.|.|..|+.+.++.+|.+.++|
T Consensus 10 ~~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~-----~~I~~-~~~IrllFDGdRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 10 ITLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTE-----VKISF-HERIRLEFEGEWLDPNDQVQSTELEDED 75 (82)
T ss_dssp EEEEEEESSSCCEE-EEEETTSBHHHHHHHHHHH-----HTCCC-CTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred HHHhhhccCCCCeE-EEecCCCCHHHHHHHHHHH-----cCCCc-CceEEEEEcCcccCccCChhhhCCcCCc
Confidence 44455555555777 8999999999998777543 35763 2399999999999999999999999887
No 105
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.96 E-value=1e-06 Score=70.62 Aligned_cols=81 Identities=11% Similarity=0.162 Sum_probs=1.5
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGG 84 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 84 (117)
.+.|.||++. +|..+. +.+.++++...|++..+ +..+++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 19 ~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~-----~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD---- 85 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHH-----HHhCCC--cceEEEEECCeECCCCCChHHcCCCccc----
Confidence 4577888876 677777 99999999999999984 455665 7999999999999999999999999886
Q ss_pred eEEEEEEeCCCCchhh
Q 033555 85 VTTMHVVVQPPSTEKE 100 (117)
Q Consensus 85 ~~tmhlv~~~~~~~~~ 100 (117)
+|++..+..+.+..
T Consensus 86 --~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 86 --IIEAHREQIGGMRT 99 (360)
T ss_dssp -------------CHH
T ss_pred --hhhhhhccCchHHH
Confidence 78888888887553
No 106
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.96 E-value=4.6e-06 Score=53.28 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=46.8
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCee-----cCCCCcccccCCCCCC
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKI-----LENNRTLGECRSPLCD 80 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~-----L~D~~tL~~~~i~~g~ 80 (117)
.+.|+||..+|... +++++++|+.+|+++|++..+ ++ ++.+.|.++-.. +.++.+|+++||..||
T Consensus 4 ~m~lRvrs~~G~~R--i~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 4 SIIIRVQSPDGVKR--ITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCCEEECSSEEEE--CCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred cEEEEEECCCCCEE--EEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 37899999999544 789999999999999976643 33 233333222222 3478899999999887
No 107
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.88 E-value=0.00015 Score=46.10 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=53.6
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeec---CCCCcccccCCC
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL---ENNRTLGECRSP 77 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~ 77 (117)
..++..+|.||+.+|..+. -.|..++||.+|.+-|... +.+ ....+|+ |=.|.| +.+.||+++|+.
T Consensus 3 ~~~~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~~------~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~ 73 (84)
T 3qx1_A 3 HMEPVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASK------GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLF 73 (84)
T ss_dssp -CCCEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHT------TCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCC
T ss_pred CCCCeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHc------CCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCC
Confidence 4567899999999999987 8999999999999999653 222 4677887 346777 457899999997
Q ss_pred CC
Q 033555 78 LC 79 (117)
Q Consensus 78 ~g 79 (117)
.+
T Consensus 74 p~ 75 (84)
T 3qx1_A 74 PQ 75 (84)
T ss_dssp SE
T ss_pred CC
Confidence 43
No 108
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.59 E-value=9e-06 Score=64.73 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=0.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCe
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGV 85 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 85 (117)
+.|.||++. +|..+. |.+..+++...|++..+ +..+++ +.++||+|.|+.|.+++|.+++++.+||
T Consensus 29 ~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~-----~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d----- 94 (389)
T 4da1_A 29 THINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFA-----KRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDND----- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEE-EEECCCChHHHHHHHHH-----HHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 567888876 777777 99999999999999984 445665 7999999999999999999999999886
Q ss_pred EEEEEEeCCCC
Q 033555 86 TTMHVVVQPPS 96 (117)
Q Consensus 86 ~tmhlv~~~~~ 96 (117)
+|++.+...+
T Consensus 95 -~i~~~~~q~g 104 (389)
T 4da1_A 95 -IIEAHREQIG 104 (389)
T ss_dssp -----------
T ss_pred -Eeeeeecccc
Confidence 5566655544
No 109
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.52 E-value=0.00047 Score=45.66 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=55.7
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
..|.|+|+ ..|..+. |.+-.++-..-|.+..+. ..+.+ ++++||+|.|..+.++.|.+++++.+||
T Consensus 20 ~~IniKV~-~~g~ev~-FkIK~tt~l~KL~~aYc~-----r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 20 RLFPLKIR-CRADLVR-LPLRMSEPLQSVVDHMAT-----HLGVS--PSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCEEEEEE-CSSSEEE-EEECSSSCTHHHHHHHHH-----HHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CeEEEEEE-cCCcEEE-EEEecCChHHHHHHHHHh-----hcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 45888888 4677777 999999999888888754 34554 7999999999999999999999999887
No 110
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.34 E-value=0.001 Score=44.48 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecC---CCCcccccCCC
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE---NNRTLGECRSP 77 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~ 77 (117)
+.....+|.||+.+|.++. -.|..++||.+|.+-|..+. +.+ .....|+ |--|.|. .++||+++++.
T Consensus 9 ~~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~-----~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ 80 (109)
T 2dzk_A 9 DRSTIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTV-----GNT--YGNFSLATMFPRREFTREDYKRRLLDLELA 80 (109)
T ss_dssp CCSCCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHH-----TTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCS
T ss_pred CCCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhcc-----CCC--CCceEEEcCCCCcCCcccccCCCHHHCCCC
Confidence 3456799999999999998 89999999999999997652 111 2445555 3456675 36799999997
Q ss_pred C
Q 033555 78 L 78 (117)
Q Consensus 78 ~ 78 (117)
.
T Consensus 81 p 81 (109)
T 2dzk_A 81 P 81 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 111
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.31 E-value=0.0017 Score=44.56 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=53.0
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeecC-CCCcccccCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKILE-NNRTLGECRSPL 78 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L~-D~~tL~~~~i~~ 78 (117)
.+...+|.||+.+|.++. ..|..++||.+|++-|....|. .. .....|+ |-.|.|+ ++.||+++++..
T Consensus 49 ~~~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~----~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~p 119 (127)
T 1s3s_G 49 AEPTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPA----MA--ATSFVLMTTFPNKELADENQTLKEANLLN 119 (127)
T ss_dssp TSCCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSG----GG--TSCEEEEETTTTEECCSTTCBHHHHTCSS
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcC----CC--CCCeEEecCCCCCCCCCCCCcHHHCCCcC
Confidence 456789999999999998 8999999999999999876431 11 2456665 3467886 468999999974
No 112
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.27 E-value=0.00068 Score=43.56 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=55.9
Q ss_pred eEEEEEe--CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 8 LEIKFRL--TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~--~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.|++.+ -.|+++. +.++...||+.|++.+++...-+. .+.+--++|+.-.|.+|.++++|++|++..||
T Consensus 5 I~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~~--~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 5 IDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVSM--PPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCCS--CCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCCc--CCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 5566665 4788998 999999999999999987643222 22221489999999999999999999999997
No 113
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.22 E-value=0.0022 Score=50.32 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=52.9
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe------cCeecCCCCcccccCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS------AGKILENNRTLGECRSPL 78 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~ 78 (117)
|..+.|++.+. +.+-. +.|+|++||+++...|.++.|+...+ + .++=-|.- .|+.|++..||+.|++..
T Consensus 1 ~~~~~~~~~~~-~~~~~-~~f~~~~~v~~~~~~i~e~~~~~~~~-~--~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~ 75 (371)
T 3ivf_A 1 MVALSLKISIG-NVVKT-MQFEPSTMVYDACRMIRERIPEALAG-P--PNDFGLFLSDDDPKKGIWLEAGKALDYYMLRN 75 (371)
T ss_dssp -CCEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHTTCGGGGSS-C--GGGEEEEECCSSGGGCEECCTTSBGGGGTCCT
T ss_pred CccEEEEEEec-ceeEE-EEECCCCCHHHHHHHHHHhcccccCC-C--HHHCeEeccCCCCCcCEeccCCCCHHHhCCCC
Confidence 35688999998 77777 99999999999999999888753111 0 12223322 378999999999999987
Q ss_pred CC
Q 033555 79 CD 80 (117)
Q Consensus 79 g~ 80 (117)
++
T Consensus 76 ~~ 77 (371)
T 3ivf_A 76 GD 77 (371)
T ss_dssp TC
T ss_pred Cc
Confidence 64
No 114
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.17 E-value=0.0025 Score=43.63 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=52.4
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEE--ecCeec--C-CCCcccccCCCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLI--SAGKIL--E-NNRTLGECRSPL 78 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI--~~Gk~L--~-D~~tL~~~~i~~ 78 (117)
.....+|.||+.+|.++. ..|..++||.+|.+-|... +.+ ....+|+ |=.|.| + .+.||+++++..
T Consensus 40 ~~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~------~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK------GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SSCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH------HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 456899999999999998 8999999999999999653 222 3566776 447778 3 478999999864
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.09 E-value=0.0049 Score=41.01 Aligned_cols=66 Identities=12% Similarity=0.176 Sum_probs=51.8
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe--cCeecC--CCCcccccCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGKILE--NNRTLGECRSPLC 79 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~Gk~L~--D~~tL~~~~i~~g 79 (117)
...++|.||+.+|.++. -.|..++||.+|..-|..+ +. .+...+|+. =.|.|. .+.||+++|+...
T Consensus 21 ~~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~------~~--~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~ 90 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV------GY--HKSLYRLSTSFPRRALEVEGGSSLEDIGITVD 90 (109)
T ss_dssp SSEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH------TC--CTTTEEEECSSSCCBCCCCSSCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc------CC--CCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCC
Confidence 56899999999999988 8999999999999999754 11 135677764 366775 5789999999743
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.06 E-value=0.00095 Score=46.32 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=51.1
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCC---------------------------------C--
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT---------------------------------V-- 53 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~---------------------------------~-- 53 (117)
-|+|++.+|.... +.|+.+.+|.+++..|.... |++.. -
T Consensus 13 ~LkV~llDg~~kt-l~VD~S~~V~~lv~~Ic~ki-----gI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 86 (128)
T 2kc2_A 13 PLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK 86 (128)
T ss_dssp EEEEECTTSCEEE-EEEEECSSHHHHHHHHHHHH-----TCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred cEEEEcCCCCEEE-EEeCCCcCHHHHHHHHHHHh-----CCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence 4889999999999 99999999999999998652 22210 0
Q ss_pred CceeEEe--cCeecCCCCcccccCCCCCC
Q 033555 54 KDVKLIS--AGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 54 ~~qrLI~--~Gk~L~D~~tL~~~~i~~g~ 80 (117)
..+||-. .+..|+++.||.+.||.+++
T Consensus 87 ~k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 87 LKQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp SCCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 2455532 35799999999999999875
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.12 E-value=0.018 Score=39.00 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=42.8
Q ss_pred eeEEEEEeCC--CceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCC----CCceeEEe----cCeecCCCC-------
Q 033555 7 QLEIKFRLTD--GSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRT----VKDVKLIS----AGKILENNR------- 69 (117)
Q Consensus 7 ~~~i~~~~~~--G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~----~~~qrLI~----~Gk~L~D~~------- 69 (117)
++.|.+.... +..+. +.+-..+||.++|+||.... ..+.|.| ++.+.|=+ +|++|.|.+
T Consensus 11 ~ltl~v~~~~~~~~~i~-vkVLdCDTItQvKeKiLd~v---yk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~ 86 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIP-VKVLNCDTISQVKEKIIDQV---YRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREG 86 (111)
T ss_dssp EEEEEEEETTSCCCCEE-EEEETTCBHHHHHHHHHHHH---TC---------CCSEEEEEC--CCCEECCSSCTTSCC--
T ss_pred EEEEEEEecCCCCCcee-eeeeccCcHHHHHHHHHHHH---HcCCccccCCCCCceeeEEecCCCCccccccCccceecC
Confidence 4555555432 33454 67778999999999998642 1233222 57777866 356776633
Q ss_pred ------cccccCCCCC
Q 033555 70 ------TLGECRSPLC 79 (117)
Q Consensus 70 ------tL~~~~i~~g 79 (117)
||+.|++++|
T Consensus 87 ~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 87 RWKRVNTLMHYNVRDG 102 (111)
T ss_dssp -CCCCCBHHHHTCCTT
T ss_pred cceEecchhhcCCCCC
Confidence 5667889887
No 118
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.43 E-value=0.097 Score=36.14 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=43.7
Q ss_pred CceeeeeecCCCCcHHHHHHHhhhcCCCc--ccCCCCCCCceeEEe-cC---e-ecCCCC-------------cccccCC
Q 033555 17 GSDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS-AG---K-ILENNR-------------TLGECRS 76 (117)
Q Consensus 17 G~~~~~l~~~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~qrLI~-~G---k-~L~D~~-------------tL~~~~i 76 (117)
+..+. +.+=..+||.++|+||...+=.. +...| +++.+.|=+ .| + +|.|.+ ||+.|++
T Consensus 16 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 16 MDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CCcee-eeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 33454 67778999999999998642111 11123 267888876 34 4 476532 5667899
Q ss_pred CCCCCCCCeEEEEEEeCC
Q 033555 77 PLCDIPGGVTTMHVVVQP 94 (117)
Q Consensus 77 ~~g~~~~~~~tmhlv~~~ 94 (117)
++| .+|-++.+.
T Consensus 94 ~dg------atv~l~~~~ 105 (127)
T 3h6n_A 94 PEG------ASLAMSLID 105 (127)
T ss_dssp CTT------CEEEEEECC
T ss_pred CCC------CEEEEEEcc
Confidence 987 366666543
No 119
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.15 E-value=0.13 Score=33.48 Aligned_cols=76 Identities=11% Similarity=0.038 Sum_probs=58.7
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeE
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVT 86 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 86 (117)
.++|.|...+|++.. +.+.|++++.++=+.-..++ ++. +++-.|-|++|.|+=+..++-.|++.| .
T Consensus 9 ~m~v~Vl~~n~rr~~-VKvtp~t~L~~VL~eaC~K~-----gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnn------A 74 (90)
T 2al3_A 9 GSAVSVLAPNGRRHT-VKVTPSTVLLQVLEDTCRRQ-----DFN--PSEYDLKFQRTVLDLSLQWRFANLPNN------A 74 (90)
T ss_dssp -CCEEEECTTSCEEE-ECCCTTSBHHHHHHHHHHHT-----TCC--GGGCEEEETTEEESSSCBHHHHCCCSS------C
T ss_pred ccEEEEEcCCCcEEE-EEECCCCCHHHHHHHHHHHh-----CCC--hhhCeEEeCCEeccccceeEecCCCCC------C
Confidence 348889889999998 89999999999755555442 342 578899999999998888888999876 3
Q ss_pred EEEEEeCCCC
Q 033555 87 TMHVVVQPPS 96 (117)
Q Consensus 87 tmhlv~~~~~ 96 (117)
.+.|+.....
T Consensus 75 kLELv~~s~s 84 (90)
T 2al3_A 75 KLEMVPVSRS 84 (90)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEEccCC
Confidence 6666655444
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.84 E-value=0.16 Score=35.52 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=47.9
Q ss_pred eeEEEEEeCCC------ceeeeeecCCCCcHHHHHHHhhhcCCCc--ccCCCCCCCceeEEe----cCe-ecCCCC----
Q 033555 7 QLEIKFRLTDG------SDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS----AGK-ILENNR---- 69 (117)
Q Consensus 7 ~~~i~~~~~~G------~~~~~l~~~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~qrLI~----~Gk-~L~D~~---- 69 (117)
++.|.+....| ..+. +.+=..+||.++|+||....=.+ +...|. ++++-|=+ +|+ +|.|.+
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP~-~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPD-PRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp EEEEEEEEC-------CCCEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCCC-GGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred EEEEEEEccCCcccccCCcee-EEEeccccHHHHHHHHHHHHHcCCccccCCC-ccceeEEEecCCcCceEeeccCCccc
Confidence 45555544322 3454 77789999999999998531000 112232 66777755 354 476542
Q ss_pred ---------cccccCCCCCCCCCCeEEEEEEeCC
Q 033555 70 ---------TLGECRSPLCDIPGGVTTMHVVVQP 94 (117)
Q Consensus 70 ---------tL~~~~i~~g~~~~~~~tmhlv~~~ 94 (117)
||+.|++++| .+|-|+.+.
T Consensus 102 ~~~~wkrLNTL~HY~V~Dg------a~l~l~~~~ 129 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDG------ATVALVPCL 129 (138)
T ss_dssp EETTEEECCBHHHHTCCTT------CEEEEEEC-
T ss_pred ccCCceeecchhccCCCCC------CEEEEEECC
Confidence 7888999987 366666553
No 121
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.93 E-value=0.29 Score=33.28 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=45.2
Q ss_pred eeEEEEEeCCC---ceeeeeecCCCCcHHHHHHHhhhcCCCc--ccCCCCCCCceeEEe-cC---e-ecCCCC-------
Q 033555 7 QLEIKFRLTDG---SDIGPKSFPAATSVATLKESVLSQWPKE--KENGPRTVKDVKLIS-AG---K-ILENNR------- 69 (117)
Q Consensus 7 ~~~i~~~~~~G---~~~~~l~~~~~~TV~~lK~~I~~~wp~~--~~~~p~~~~~qrLI~-~G---k-~L~D~~------- 69 (117)
++.|.+....| ..+. +.+-..+||.++|+||....=.. +...|. ++.+.|=+ .| + +|.|.+
T Consensus 13 ~ltl~v~~~~~~~~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~-~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVP-VKILNCDTITQVKEKILDAIFKNVPCSHRPK-AADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp EEEEEECCC----CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred EEEEEEEccCCCCCCceE-eeeecCCchHHHHHHHHHHHhcCCCcccCCC-CCceeEEEecCCCCceEeecCCCccEecC
Confidence 34455443332 2344 66778999999999998542110 111232 67888866 34 3 465522
Q ss_pred ------cccccCCCCCCCCCCeEEEEEEeC
Q 033555 70 ------TLGECRSPLCDIPGGVTTMHVVVQ 93 (117)
Q Consensus 70 ------tL~~~~i~~g~~~~~~~tmhlv~~ 93 (117)
||+.|++++| .+|-++.+
T Consensus 91 ~wkrLNTL~HY~V~dg------atl~l~~~ 114 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDG------SVVALVSK 114 (117)
T ss_dssp -CCCCCBHHHHTCCTT------CEEEEEEC
T ss_pred cceEeccccccCCCCC------CEEEEEeC
Confidence 4556889877 35665554
No 122
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=92.56 E-value=0.37 Score=29.73 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=36.1
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCC
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNR 69 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~ 69 (117)
+.|++++....... +++++..||++|=+.+ ++| ++..-...+|+++.-++
T Consensus 1 M~v~Vkl~g~~~~~-~ev~~g~Tv~dLL~~L---------gl~--~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 1 MNVTVEVVGEETSE-VAVDDDGTYADLVRAV---------DLS--PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp CEEEEECSSSSEEE-EECSTTCSHHHHHHTT---------CCC--SSCCCEECCCCCCCTTS
T ss_pred CEEEEEEeCcccee-EEcCCCCcHHHHHHHc---------CCC--cceEEEEECCEECCHHH
Confidence 35667766443444 8999999999998877 455 46667888999886554
No 123
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.30 E-value=1.5 Score=27.91 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=43.2
Q ss_pred eeEEEEEeC------CCc-eeeeeecCCCCcHHHHHHHhhhcCCCcccCC--C--CCCCceeEEecCeecCCCCcccccC
Q 033555 7 QLEIKFRLT------DGS-DIGPKSFPAATSVATLKESVLSQWPKEKENG--P--RTVKDVKLISAGKILENNRTLGECR 75 (117)
Q Consensus 7 ~~~i~~~~~------~G~-~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~--p--~~~~~qrLI~~Gk~L~D~~tL~~~~ 75 (117)
.+.|++++. .|. ... +++++..||.+|.+.+...+|.-...+ + .-...+.+.-+|+.... +..
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~-~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred cEEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 355666664 343 444 788888999999999987765321111 0 00245778889998864 345
Q ss_pred CCCCC
Q 033555 76 SPLCD 80 (117)
Q Consensus 76 i~~g~ 80 (117)
+++||
T Consensus 83 L~dGD 87 (98)
T 1vjk_A 83 LKDGD 87 (98)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 66776
No 124
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.99 E-value=2.3 Score=36.35 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=46.9
Q ss_pred eeEEEEEeCCC------ceeeeeecCCCCcHHHHHHHhhhcC-C-CcccCCCCCCCceeEEe----cCe-ecCCCC----
Q 033555 7 QLEIKFRLTDG------SDIGPKSFPAATSVATLKESVLSQW-P-KEKENGPRTVKDVKLIS----AGK-ILENNR---- 69 (117)
Q Consensus 7 ~~~i~~~~~~G------~~~~~l~~~~~~TV~~lK~~I~~~w-p-~~~~~~p~~~~~qrLI~----~Gk-~L~D~~---- 69 (117)
++.|.+....| ..+. +.+-..+||.++|+||.... . .-+...|. ++++.|=+ .|+ +|.|.+
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~-VkVLdCDTItQVKeKiLDavYk~~pyS~rP~-~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPD-PRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp EEEEEEECC-------CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEeecCccccCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCC-CCCcceEEeeCCCCceeecccCccce
Confidence 44555554333 2344 67778999999999998431 0 00112332 57777765 344 576644
Q ss_pred ---------cccccCCCCCCCCCCeEEEEEEeC
Q 033555 70 ---------TLGECRSPLCDIPGGVTTMHVVVQ 93 (117)
Q Consensus 70 ---------tL~~~~i~~g~~~~~~~tmhlv~~ 93 (117)
||+.|++++|. +|-|+.+
T Consensus 335 ~~~~wkrLNTL~HY~V~dga------~v~L~p~ 361 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGA------TVALVPC 361 (644)
T ss_dssp EETTEEECCBTTTTTCCTTC------EEEEEEC
T ss_pred ecCcceeecchhhcCCCCCc------EEEEEec
Confidence 77889999873 5555544
No 125
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.47 E-value=1.8 Score=26.79 Aligned_cols=59 Identities=8% Similarity=0.154 Sum_probs=37.8
Q ss_pred CC-ceeeeeecCCCCcHHHHHHHhhhcCCCcccCC-C--CC-CCceeEEecCeecCCCCcccccCCCCCC
Q 033555 16 DG-SDIGPKSFPAATSVATLKESVLSQWPKEKENG-P--RT-VKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G-~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~-p--~~-~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.| .... +++++..||.+|.+.+...+|.-...+ . .. ....++.-+|+....+ ..+.+||
T Consensus 15 ~g~~~~~-~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD 78 (89)
T 3po0_A 15 AGSRTVR-VDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD 78 (89)
T ss_dssp HTCSEEE-EECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred hCCCeEE-EECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence 45 3455 888888999999999988776321100 0 00 1247888899988754 3456665
No 126
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=88.26 E-value=0.71 Score=30.84 Aligned_cols=35 Identities=11% Similarity=0.230 Sum_probs=32.3
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
+.+.|.+.+.+|.-+. +++..+.|+.++|+.++++
T Consensus 18 ~~v~v~~LlPnGi~i~-l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMIVT-LECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEEEE-EEeeccccHHHHHHHHHHH
Confidence 5789999999999998 9999999999999999875
No 127
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.63 E-value=4.9 Score=27.49 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=25.0
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCC--CCceeEEe
Q 033555 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRT--VKDVKLIS 60 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~--~~~qrLI~ 60 (117)
.+. +.+-..+||.++|+||...+=. ..+.|.+ ++.+.|=+
T Consensus 40 ~v~-VkVLdCDTItQVKEKILdavYk-~k~~pys~r~~d~dLEw 81 (126)
T 3kuz_A 40 NIS-VNVLDCDTIGQAKEKIFQAFLS-KNGSPYGLQLNEIGLEL 81 (126)
T ss_dssp EEE-EEEETTCBHHHHHHHHHHHHHH-HHSSCCSSCGGGEEEEE
T ss_pred ceE-eeeecCCcHHHHHHHHHHHHhc-cCCCcCCCCccccceEE
Confidence 344 6777899999999999854200 0133332 56677755
No 128
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.59 E-value=3.9 Score=34.80 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=47.5
Q ss_pred eeEEEEEeCCC---ceeeeeecCCCCcHHHHHHHhhhcCCC--cccCCCCCCCceeEEe----cCe-ecCCC--------
Q 033555 7 QLEIKFRLTDG---SDIGPKSFPAATSVATLKESVLSQWPK--EKENGPRTVKDVKLIS----AGK-ILENN-------- 68 (117)
Q Consensus 7 ~~~i~~~~~~G---~~~~~l~~~~~~TV~~lK~~I~~~wp~--~~~~~p~~~~~qrLI~----~Gk-~L~D~-------- 68 (117)
.+.|.+....| ..+. +.+-..+||.++|+||....=. -+...|. ++++.|=+ .|+ +|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP~-~~~~dLEwr~g~~g~~iL~D~D~ts~~~~ 310 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRPK-AEDMDLEWRQGRMARIILQDEDITTKIEC 310 (627)
T ss_dssp EEEEEEECTTTC--CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSCC-GGGEEEEEESCSSCEEEECSSSTTCCEET
T ss_pred eEEEEEeccCCCCCCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCC-CCccceeEeeCCCCceeeccCCccccccC
Confidence 44555544432 3344 6777899999999999853100 0122342 67787755 344 56552
Q ss_pred -----CcccccCCCCCCCCCCeEEEEEEeCC
Q 033555 69 -----RTLGECRSPLCDIPGGVTTMHVVVQP 94 (117)
Q Consensus 69 -----~tL~~~~i~~g~~~~~~~tmhlv~~~ 94 (117)
.||+.|++++| .+|-|+.+.
T Consensus 311 ~wkrLNTL~HY~V~Dg------a~v~L~p~~ 335 (627)
T 3ig3_A 311 DWKRVNSLAHYQVTDG------SLVALVPKQ 335 (627)
T ss_dssp TEEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred ceeEecchhhcCCCCC------ceEEEEecc
Confidence 26778999987 356665554
No 129
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=87.51 E-value=3.1 Score=24.82 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=37.1
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+.|+++-..+. .+ ++++...||.+|.+.+. .+ +....+..+|+++..+. .+++||
T Consensus 5 m~i~vNg~~~~-~~-~~~~~~~tv~~Ll~~l~---------~~--~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 5 MKFTVITDDGK-KI-LESGAPRRIKDVLGELE---------IP--IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEEEEETTEE-EE-EEESSCCBHHHHHHHTT---------CC--TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred EEEEEeCccCc-ee-EECCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECCCcc-----cCCCCC
Confidence 55666443332 22 67788899999999882 22 45677899999997655 455665
No 130
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=86.43 E-value=5 Score=29.12 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=38.0
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeE--Ee-cCe--ecCC-CCcccccCCCCCC
Q 033555 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKL--IS-AGK--ILEN-NRTLGECRSPLCD 80 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrL--I~-~Gk--~L~D-~~tL~~~~i~~g~ 80 (117)
+.++..+||.+|++.+.... ++|. -...|| +| .++ .|+| +.||+++++.++.
T Consensus 144 ~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 144 RRFSKADTIDTIEKEIRKIF-----SIPD-EKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQ 201 (217)
T ss_dssp EEECTTSBHHHHHHHHHHHT-----TCCT-TSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTC
T ss_pred EEEcccchHHHHHHHHHHHh-----CCCC-CCceEEEEecCCCCeeecCCCCCCHHHhCCCCCC
Confidence 77899999999999997653 4552 136888 34 333 6666 4699999998764
No 131
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=83.74 E-value=6.5 Score=25.07 Aligned_cols=70 Identities=10% Similarity=0.069 Sum_probs=49.3
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCC-CCCCCceeEEecCee--cCCCCcccccCCCCCC
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENG-PRTVKDVKLISAGKI--LENNRTLGECRSPLCD 80 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~-p~~~~~qrLI~~Gk~--L~D~~tL~~~~i~~g~ 80 (117)
+-|..++...-...-+.++..+|+.++-++++.+- -.-.. |. +.-+|.-++|+. |.++.|+++.||..-+
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~--VGrrv~p~-pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHC--VNRRVAPR-EGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTT--BTTTBCCC-SSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhh--cceeeCCC-CCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 34444554443333378899999999999998651 11112 33 568999999997 9999999999997543
No 132
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=82.77 E-value=2.7 Score=25.10 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.6
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
... +++++..||.+|.+.+...+|. +.. . ...+..+|++...+ ..+++||
T Consensus 17 ~~~-~~~~~~~tv~~ll~~l~~~~p~-~~~----v-~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 17 QED-IVLEQALTVQQFEDLLFERYPQ-INN----K-KFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp EEE-CCCSSCEEHHHHHHHHHHHCGG-GTT----C-CCEEEETTEEECTT-----SEECTTC
T ss_pred EEE-EECCCCCCHHHHHHHHHHHCcc-hhc----c-eEEEEECCEECCCC-----CCcCCCC
Confidence 344 6777889999999999776542 111 1 23788899988754 3455665
No 133
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.45 E-value=3.2 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=31.8
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
...+-|||-..+|.... +.|++++|+.++-+.+..+
T Consensus 7 ~~k~vvkvf~~Dgssks-i~V~~~~Ta~dv~~~L~~K 42 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRS-VEVAAGATARHVCEMLVQR 42 (100)
T ss_dssp CSCEEEEEEETTSCEEE-EEECTTCCHHHHHHHHHCS
T ss_pred CCCEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHHH
Confidence 34688999999999999 9999999999999999753
No 134
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=82.05 E-value=4.2 Score=25.75 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=36.0
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCe
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK 63 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk 63 (117)
.+.||+.+. -++. +.++++.+..+|+++|.++. ++| ++..+|-|.-+
T Consensus 5 ~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL-----~l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKL-----ELR--LEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHT-----TCC--GGGCCEEECCT
T ss_pred cEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHh-----CCC--cceeEEEeeCC
Confidence 366777665 5787 99999999999999997664 244 57888877653
No 135
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=81.00 E-value=14 Score=27.00 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=37.4
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe-c-C---eecCC-CCcccccCCCCC
Q 033555 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS-A-G---KILEN-NRTLGECRSPLC 79 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~-~-G---k~L~D-~~tL~~~~i~~g 79 (117)
+.++..+||.+|++.+.... ++|. -...||-. . . ..|.| +.||.++++..+
T Consensus 156 ~~~Sk~~ti~~l~~~~~~~~-----~i~~-~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~ 212 (231)
T 3jyu_A 156 CHFSKADTIATIEKEMRKLF-----NIPA-ERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG 212 (231)
T ss_dssp EEECTTCBHHHHHHHHHHHT-----TCCT-TSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred EEecccCcHHHHHHHHHHHh-----CCCC-CCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence 67799999999999997653 4552 23688843 2 2 36665 589999999876
No 136
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=79.19 E-value=1.7 Score=26.45 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=28.0
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcc
Q 033555 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTL 71 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL 71 (117)
+++++..||.+|.+.+. ++ ...+.+..+|++...+..|
T Consensus 25 ~~~~~~~Tv~dLl~~L~---------~~--~~~v~VavNg~~v~~~~~L 62 (77)
T 1rws_A 25 IEWREGMKVRDILRAVG---------FN--TESAIAKVNGKVVLEDDEV 62 (77)
T ss_dssp CCCCSSCCHHHHHHTTT---------CS--SCSSCEEETTEEECSSSCC
T ss_pred EECCCCCcHHHHHHHhC---------CC--CcCEEEEECCEECCCCCCc
Confidence 56778899999988872 33 3567888999988765433
No 137
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=79.09 E-value=12 Score=33.85 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCc-ccCCCCCCCceeEEecCe-----ec-CCCCcccccCC
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKE-KENGPRTVKDVKLISAGK-----IL-ENNRTLGECRS 76 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~-~~~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i 76 (117)
..+.+.|-|.+.+|..+. +++..+.|+.++|+.|+.+-... ..+.-.++++-.|.+-.+ .+ ++.+.|.+++.
T Consensus 48 ~~~~v~vd~LLPnGi~i~-~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~ 126 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGIYIQ-LEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRP 126 (1092)
T ss_dssp CCSEEEEEEECTTCCEEE-EEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCB
T ss_pred CCCceEEEEECCCceEEE-EEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeecc
Confidence 457899999999999998 99999999999999999761110 111212367777777332 24 55578888764
Q ss_pred CCCCCCCCeEEEEEEeCC
Q 033555 77 PLCDIPGGVTTMHVVVQP 94 (117)
Q Consensus 77 ~~g~~~~~~~tmhlv~~~ 94 (117)
-.+ .+.|+-+.
T Consensus 127 ~~p-------~l~lve~~ 137 (1092)
T 2y3a_A 127 FLP-------VLKLVTRS 137 (1092)
T ss_dssp SSS-------CEEEEESC
T ss_pred cce-------EEEEEecC
Confidence 322 45666553
No 138
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=78.70 E-value=3.6 Score=24.66 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=32.1
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccC-CCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 23 KSFPAATSVATLKESVLSQWPKEKEN-GPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~-~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
++ ++..||.+|.+.+....|. +.. ++ .....+..+|+....+ ..+++||
T Consensus 21 ~~-~~~~tv~~ll~~L~~~~p~-~~~~l~--~~~~~v~vN~~~v~~~-----~~l~~gD 70 (81)
T 1fm0_D 21 VA-ADFPTVEALRQHMAAQSDR-WALALE--DGKLLAAVNQTLVSFD-----HPLTDGD 70 (81)
T ss_dssp EC-SCCSBHHHHHHHHHTTCHH-HHHHHC--CTTCEEEETTEECCTT-----CBCCTTC
T ss_pred Ec-CCCCCHHHHHHHHHHHChh-HHHHhc--CCCEEEEECCEECCCC-----CCCCCCC
Confidence 55 5778999999999766542 211 22 2456788899987643 3566675
No 139
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=77.67 E-value=16 Score=26.99 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=53.0
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe---cCe--ecCCCCcccccCCCCCCC
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS---AGK--ILENNRTLGECRSPLCDI 81 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~---~Gk--~L~D~~tL~~~~i~~g~~ 81 (117)
.+.++|.+.+| +++ +.+++++|+.+|=+.|.+. -++.. .+..=|.| .|. .|+.++.|.+.++..+.
T Consensus 1 ~i~~~V~l~d~-~~~-~~v~~~tt~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~- 71 (294)
T 1ef1_A 1 TISVRVTTMDA-ELE-FAIQPNTTGKQLFDQVVKT-----IGLRE-VWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES- 71 (294)
T ss_dssp CEEEEEEETTE-EEE-EEECTTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCS-
T ss_pred CEEEEEEECCc-eEE-EEECCCCcHHHHHHHHHHH-----cCCCC-cceeEEEEECCCCceeecccccCHHhhccCCCC-
Confidence 36789999998 788 9999999999999999754 23432 34455554 233 67777788776544222
Q ss_pred CCCeEEEEEEeCCCCc
Q 033555 82 PGGVTTMHVVVQPPST 97 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~~ 97 (117)
+..+++-++.-.+
T Consensus 72 ---~~~l~fr~kf~~~ 84 (294)
T 1ef1_A 72 ---PLLFKFRAKFYPE 84 (294)
T ss_dssp ---SEEEEEEESSCCS
T ss_pred ---CEEEEEEEEEECC
Confidence 3566666664443
No 140
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.37 E-value=19 Score=26.85 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=54.5
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe--cCe--ecCCCCcccccCCCCCCC
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--AGK--ILENNRTLGECRSPLCDI 81 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~Gk--~L~D~~tL~~~~i~~g~~ 81 (117)
..+.++|.+.+| ++. +.+++++|+.+|=+.|... -++.. .+..=|.| .|. .|+.++.|.+.....+.
T Consensus 21 ~~~~~~V~lldg-~~~-~~v~~~t~~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~- 91 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EME-FNCEMKWKGKDLFDLVCRT-----LGLRE-TWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE- 91 (314)
T ss_dssp CEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEETTEEEECCTTSBGGGSSCCCSS-
T ss_pred CeeEEEEEeCCc-eEE-EEeCCCCcHHHHHHHHHHH-----hCCCC-CccceEEEEeCCcCeeCCCccCHHHcCCCCCC-
Confidence 468899999999 888 9999999999999998754 23432 45555544 343 68888888876554322
Q ss_pred CCCeEEEEEEeCCCC
Q 033555 82 PGGVTTMHVVVQPPS 96 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~ 96 (117)
+..+++-++.-.
T Consensus 92 ---~~~l~fr~kf~~ 103 (314)
T 1h4r_A 92 ---PVTFHFLAKFYP 103 (314)
T ss_dssp ---SEEEEEEESSCC
T ss_pred ---CEEEEEEEEEec
Confidence 356666666443
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.48 E-value=2.6 Score=27.22 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=48.0
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPL 78 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~ 78 (117)
|.++++-+++...+..- +.|+|..+..+|=-.|.++ -++ -|.+....|=--++..|+=+.+|.+|||.+
T Consensus 8 E~TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~K--cef--dp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTI-VRVSPHASLQELAPIICSK--CEF--DPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHH--TTC--CTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhc--ccC--ChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 56888999886544443 7999999999999999865 122 232222222234566888889999999984
No 142
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=74.03 E-value=11 Score=22.30 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=37.2
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.|++++...-.-+.+++ +..||.+|.+.+... | ++... ....++.-+|+.+.+. +..+++||
T Consensus 2 ~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~-~-~l~~~---l~~~~vavN~~~v~~~----~~~l~~gD 63 (74)
T 3rpf_C 2 MVEVRFFGPIKEENFFI-KANDLKELRAILQEK-E-GLKEW---LGVCAIALNDHLIDNL----NTPLKDGD 63 (74)
T ss_dssp EEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTC-T-TTTTT---TTTCEEEESSSEECCT----TCCCCTTC
T ss_pred EEEEEEEeecceeEEee-CCCcHHHHHHHHHHC-c-CHHHH---hhccEEEECCEEcCCC----CcCCCCCC
Confidence 35555544332123677 678999999999754 2 22211 2567788888885432 34566675
No 143
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=71.08 E-value=12 Score=24.60 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=28.1
Q ss_pred ceeEEEEEeC------CC--ceeeeeecCC---CCcHHHHHHHhhhcCCCcc
Q 033555 6 DQLEIKFRLT------DG--SDIGPKSFPA---ATSVATLKESVLSQWPKEK 46 (117)
Q Consensus 6 ~~~~i~~~~~------~G--~~~~~l~~~~---~~TV~~lK~~I~~~wp~~~ 46 (117)
+++.|++++. .| +.++ ++++. ..||.+|-+.|.+++|...
T Consensus 10 ~~M~v~V~~~~~Lr~~~g~~~~~~-vel~~~~~~~TV~~Ll~~L~~~~~~~~ 60 (114)
T 1wgk_A 10 APLCVKVEFGGGAELLFDGVKKHQ-VALPGQEEPWDIRNLLVWIKKNLLKER 60 (114)
T ss_dssp CCEEEEEEECTTTGGGTTTCSEEE-EEECCCSSCCBHHHHHHHHTTTTCCSC
T ss_pred CCcEEEEEEchHHHHHhCCceEEE-EEeCCCCCCCCHHHHHHHHHHHccchh
Confidence 4577777774 33 2444 67773 3699999999998887553
No 144
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=70.89 E-value=17 Score=23.01 Aligned_cols=55 Identities=5% Similarity=0.066 Sum_probs=41.6
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCC-CCCCCceeEEecC--eecCCCCcccccCCCCC
Q 033555 23 KSFPAATSVATLKESVLSQWPKEKENG-PRTVKDVKLISAG--KILENNRTLGECRSPLC 79 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~-p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g 79 (117)
+.++.++|+.++=++++.+ .-.-.. |.+-.-.|..++| +.|..+.|+++.||..-
T Consensus 17 V~VDt~dTmdqVA~kvA~H--sVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~ 74 (83)
T 2inc_C 17 VPVDTEDTMDQVAEKCAYH--SINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPT 74 (83)
T ss_dssp EEECTTCBHHHHHHHHHTT--TBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTT
T ss_pred EEecCCCcHHHHHHHHhhh--hcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCc
Confidence 6789999999999999864 111111 2213368888999 99999999999999754
No 145
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.24 E-value=36 Score=28.27 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=54.6
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec---C--eecCCCCcccccCCCCCCC
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---G--KILENNRTLGECRSPLCDI 81 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g~~ 81 (117)
.+.++|.+.+| ++. +.+++++|+.+|=+.|... -++.. ....=|.|. | .+|+.+..|.+.++..+
T Consensus 4 ~i~v~V~llDg-t~e-~~vd~~tt~~ell~~V~~~-----LgL~e-~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~-- 73 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELE-FAIQQTTTGKQLFDQVVKT-----IGLRE-VWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE-- 73 (575)
T ss_dssp EEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHH-----HTCCC-GGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC--
T ss_pred eEEEEEEeCCC-eEE-EEECCCCCHHHHHHHHHHH-----cCCCC-ccceeEEEEecCcchhHhhccccHHHhcccCC--
Confidence 68899999998 787 9999999999999888754 23432 455555553 2 37777778877655433
Q ss_pred CCCeEEEEEEeCCCCc
Q 033555 82 PGGVTTMHVVVQPPST 97 (117)
Q Consensus 82 ~~~~~tmhlv~~~~~~ 97 (117)
.+..+++-++.-.+
T Consensus 74 --~~~~L~FRvkfy~~ 87 (575)
T 2i1j_A 74 --NPLQFKFRAKFYPE 87 (575)
T ss_dssp --SSEEEEEEESSCCS
T ss_pred --CCeEEEEEEEEcCC
Confidence 24567776665544
No 146
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=69.63 E-value=5.9 Score=25.30 Aligned_cols=33 Identities=12% Similarity=0.359 Sum_probs=25.1
Q ss_pred EEEEEeCCCceeeeeecC-CCCcHHHHHHHhhhc
Q 033555 9 EIKFRLTDGSDIGPKSFP-AATSVATLKESVLSQ 41 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~-~~~TV~~lK~~I~~~ 41 (117)
.|.+|+.+.+...-+.|+ ...||.+||+.|..+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 366777777766656775 678999999999764
No 147
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=67.44 E-value=13 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.2
Q ss_pred eecC--CCCcHHHHHHHhhhcCCC
Q 033555 23 KSFP--AATSVATLKESVLSQWPK 44 (117)
Q Consensus 23 l~~~--~~~TV~~lK~~I~~~wp~ 44 (117)
++++ +..||.+|.+.+.++.|.
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCS
T ss_pred EecCCCCCCcHHHHHHHHHHHCch
Confidence 6666 678999999999887764
No 148
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=67.35 E-value=7 Score=29.41 Aligned_cols=78 Identities=13% Similarity=-0.071 Sum_probs=51.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec---C--eecCCCCcccccCCCCCC
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---G--KILENNRTLGECRSPLCD 80 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g~ 80 (117)
..+.++|.+.+|.... +.+++++|+.+|=+.|... -++.. .+..=|.|. | +.|+.++.|.+.... .
T Consensus 16 ~~~~~~V~lldgt~~~-~~vd~~tt~~el~~~v~~~-----l~L~e-~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~-~- 86 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYE-CVVEKHAKGQDLLKRVCEH-----LNLLE-EDYFGLAIWDNATSKTWLDSAKEIKKQVRG-V- 86 (296)
T ss_dssp -CCEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHH-----HTCSS-GGGEEEEEEEETTEEEECCTTSBHHHHC-----
T ss_pred ceEEEEEEccCCCEEE-EEECCCCCHHHHHHHHHHH-----cCCCC-cceeEEEEEcCCCccchhccchhHHHhcCC-C-
Confidence 3578999999999998 9999999999999999754 23322 344444432 2 367777777664321 1
Q ss_pred CCCCeEEEEEEeCCCC
Q 033555 81 IPGGVTTMHVVVQPPS 96 (117)
Q Consensus 81 ~~~~~~tmhlv~~~~~ 96 (117)
+..+++.++.-.
T Consensus 87 ----~~~l~frvkfy~ 98 (296)
T 3qij_A 87 ----PWNFTFNVKFYP 98 (296)
T ss_dssp ----CCEEEEEESSCC
T ss_pred ----CcEEEEEEEEeC
Confidence 245666665443
No 149
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=65.71 E-value=9.6 Score=28.64 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.4
Q ss_pred CCCCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhh
Q 033555 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLS 40 (117)
Q Consensus 1 ~~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~ 40 (117)
|++. +..|+|-..+|.... +.|++++|+.+|-..+..
T Consensus 4 ~~~~--~~ivkv~~~d~ss~~-l~V~~~mta~ev~~~l~~ 40 (256)
T 3hk0_A 4 MAAA--KQDVKVFSEDGTSKV-VEILADMTARDLCQLLVY 40 (256)
T ss_dssp ------CEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHC
T ss_pred CCCC--ceEEEEEecCCcEEE-EEECCCCCHHHHHHHHHH
Confidence 4454 678888889999998 999999999999988864
No 150
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=64.96 E-value=21 Score=21.84 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=36.5
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCC-----C-CCceeEEecCeecCCCCcccccCCCCCC
Q 033555 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPR-----T-VKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~-----~-~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.|...+ ++. +..||.+|.+.+..++|.-...+-. . ...+++.-+|+...+..-+ +..+++||
T Consensus 15 ~g~~~~-~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD 82 (93)
T 3dwg_C 15 TGGQKS-VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD 82 (93)
T ss_dssp TTTCSE-EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC
T ss_pred hCCCeE-Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC
Confidence 454334 664 5679999999999887632111100 0 1357788888877642222 24567776
No 151
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=63.09 E-value=17 Score=22.88 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=34.3
Q ss_pred CCCceeeeeecCCC-CcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 15 TDGSDIGPKSFPAA-TSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~~~-~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+|+.+ ++++. .||.+|.+.+. ++ +..+.+..+|+++..+ ...+..+++||
T Consensus 25 vNGe~~---el~~~~~Tv~dLL~~L~---------~~--~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNGKDV---KWKKDTGTIQDLLASYQ---------LE--NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETTEEE---CCSSSCCBHHHHHHHTT---------CT--TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECCEEE---ECCCCCCcHHHHHHHhC---------CC--CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 377654 55676 89999999882 22 4677788999988642 22334567776
No 152
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=59.70 E-value=45 Score=25.47 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=44.4
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec---------CeecCCCCcccccCC
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA---------GKILENNRTLGECRS 76 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~---------Gk~L~D~~tL~~~~i 76 (117)
.+.++|.+.+|.... +.+++++|+.+|=+.|..+. ++.. .+..-|.+. -+.|+-++++.+-+.
T Consensus 85 ~~~~~V~l~dg~~~~-~~vd~~tt~~el~~~v~~~l-----~L~e-~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKT-IMVDDSKTVTDMLMTICARI-----GITN-HDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp EEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHT-----TCSC-GGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred eeEEEEECcCCCEEE-EEECCCCCHHHHHHHHHHHc-----CCCC-ccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 467889999999998 99999999999999997652 3332 455656543 246666666666544
No 153
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=58.92 E-value=25 Score=26.62 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=35.1
Q ss_pred CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecC-eecCCCCcc
Q 033555 16 DGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAG-KILENNRTL 71 (117)
Q Consensus 16 ~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~G-k~L~D~~tL 71 (117)
+-.... +.+.+..|+.++++.+..+ .+++ ++.|.|+|.| .+.-|....
T Consensus 320 ~~~~~~-~~~~~~~~~~~~~~~~~~~-----t~i~--~~~q~~l~~~~~~~~~~~~~ 368 (396)
T 4eut_A 320 QMTAHK-IYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLEPGRL 368 (396)
T ss_dssp TTEEEE-EEECTTCBHHHHHHHHHHH-----HCCC--STTEEEESSSSEECCCSSCB
T ss_pred cceEEE-EEcCchhHHHHHHHHHHHh-----cCCC--hhhhHHHhcCCCCCCCCCCc
Confidence 344444 7888999999999999644 4565 6899999999 454455443
No 154
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=57.44 E-value=18 Score=27.60 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhh
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLS 40 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~ 40 (117)
...++.++|-+.+|.... +.|++++|+.+|-+.+..
T Consensus 28 ~~~k~ivkv~~~D~ss~~-l~V~~~~TA~dv~~~L~~ 63 (281)
T 4gmv_A 28 QVKKLVIRVHMSDDSSKT-MMVDERQTVRQVLDNLMD 63 (281)
T ss_dssp SSCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHH
T ss_pred CcccEEEEEEecCCCEEE-EEECCCCcHHHHHHHHHH
Confidence 345678999999999998 999999999999887764
No 155
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=54.83 E-value=15 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=39.4
Q ss_pred eCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCe-ecCCCCcccccC
Q 033555 14 LTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGK-ILENNRTLGECR 75 (117)
Q Consensus 14 ~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk-~L~D~~tL~~~~ 75 (117)
..+++... +.+.++.|+.++++.|. +..++| ++.|-||+.+. .|+.......|.
T Consensus 318 ~~~~~~~~-~~i~~~~tl~~l~~~i~-----~~T~i~--~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 318 MVSGRVHT-YPVTENENLQNLKSWLQ-----QDTGIP--EEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSSCCCE-EECCTTCCHHHHHHHHH-----TTSCCC--STTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccccce-eecCCCccHHHHHHHHH-----HHhCCC--HHHHHHHhccCCCCCCCcchhhhe
Confidence 34566666 88899999999999995 446787 68899988766 445554555554
No 156
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=53.49 E-value=25 Score=20.29 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=33.2
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+|+.+ ++++..||.+|.+.+. .+ ...+.+..+|+++... ...+..+++||
T Consensus 5 vNg~~~---~~~~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQAM---QCAAGQTVHELLEQLD---------QR--QAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp ESSCEE---CCCTTCCHHHHHHHHT---------CC--CSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred ECCEEE---EcCCCCcHHHHHHHcC---------CC--CCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 367554 5578889999999982 22 4677788999988632 11223456665
No 157
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=53.29 E-value=17 Score=23.03 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=22.5
Q ss_pred CCCCCceeEEEEEeCCCceeeeeecCCCCcHHHH
Q 033555 1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATL 34 (117)
Q Consensus 1 ~~~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~l 34 (117)
|++. -+.|+|...+|+..+ +++++..|+.+.
T Consensus 1 m~~~--m~~v~~~~~~g~~~~-~~~~~g~tlL~a 31 (109)
T 2y5c_A 1 MASD--VVNVVFVDRSGQRIP-VSGRVGDNVLHL 31 (109)
T ss_dssp --CC--EEEEEEECTTSCEEE-EEEETTCBHHHH
T ss_pred CCCC--cEEEEEEcCCCCEEE-EEECCCCcHHHH
Confidence 5555 356777667899877 889999999875
No 158
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=50.30 E-value=15 Score=33.18 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=45.9
Q ss_pred eEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccC---CCCCCCceeEEecCe-----ec-CCCCcccccCCC
Q 033555 8 LEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKEN---GPRTVKDVKLISAGK-----IL-ENNRTLGECRSP 77 (117)
Q Consensus 8 ~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~---~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i~ 77 (117)
+.|.+.+.+|..+. ++++.+.|+.++|+.++.+ +...+ .-.++++-.|.|-.+ .+ ++.+.|-++.+-
T Consensus 43 i~vd~LLPnGi~i~-l~v~~~~tl~~iK~~lw~~--a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~ 118 (1091)
T 3hhm_A 43 ILVECLLPNGMIVT-LECLREATLITIKHELFKE--ARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 118 (1091)
T ss_dssp EEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH--GGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS
T ss_pred eEEEEEcCCCeEEE-EEecCCCcHHHHHHHHHHH--HHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeecc
Confidence 89999999999998 9999999999999999865 22221 111245555655443 34 444566666643
No 159
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=50.21 E-value=22 Score=28.94 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=30.9
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
.+.++|.+.+|.... +.+++++|+.+|-+.|..+
T Consensus 216 ~~~~~V~l~dg~~~~-~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 216 EMTSTVYCHGGGSCK-ITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp CEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHH
T ss_pred CcceEEEecCCCeEE-EEeCCCCcHHHHHHHHHHH
Confidence 578899999999998 9999999999999999765
No 160
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=49.25 E-value=16 Score=23.60 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=34.9
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCccc-CCCCCCCc-----eeEEecCe--ecCC------CCcccccCCCCCC
Q 033555 19 DIGPKSFPAATSVATLKESVLSQWPKEKE-NGPRTVKD-----VKLISAGK--ILEN------NRTLGECRSPLCD 80 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~-~~p~~~~~-----qrLI~~Gk--~L~D------~~tL~~~~i~~g~ 80 (117)
... ++++++.|..++-+.|.+. .+.. .-| |... -|=+|.-. .|+. +++|.++|+.+|+
T Consensus 6 ~~~-l~v~~~~TL~~lid~L~~~--p~~qlk~P-Sltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ 77 (98)
T 1y8x_B 6 PQN-IQFSPSAKLQEVLDYLTNS--ASLQMKSP-AITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ 77 (98)
T ss_dssp CCC-EECCTTCBHHHHHHHHHHC--TTCCCSSC-EEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC
T ss_pred cEE-EEECCchhHHHHHHHHHhC--hHhhccCC-eeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC
Confidence 344 8999999999999999764 1111 112 1111 34455443 4543 3567888888775
No 161
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=46.55 E-value=27 Score=20.02 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=33.1
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+|+.++ + +..||.+|.+.+. .+ +..+.+..+|+++..+ .-.+..+++||
T Consensus 4 vNg~~~~---~-~~~tv~~ll~~l~---------~~--~~~v~vavN~~~v~~~-~~~~~~L~dgD 53 (64)
T 2cu3_A 4 LNGEPRP---L-EGKTLKEVLEEMG---------VE--LKGVAVLLNEEAFLGL-EVPDRPLRDGD 53 (64)
T ss_dssp ETTEEEC---C-TTCCHHHHHHHHT---------BC--GGGEEEEETTEEEEGG-GCCCCCCCTTC
T ss_pred ECCEEEE---c-CCCcHHHHHHHcC---------CC--CCcEEEEECCEECCcc-ccCCcCCCCCC
Confidence 4676554 4 6689999999882 22 4677888999988632 12234566776
No 162
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=44.04 E-value=44 Score=19.10 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=20.8
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHHhh
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLKESVL 39 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~ 39 (117)
.+++.+.+|... +++...|+.++-..+.
T Consensus 2 ~i~i~~p~g~~~---~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 2 EVMVFTPKGEIK---RLPQGATALDFAYSLH 29 (73)
T ss_dssp CEEEECTTCCEE---EECTTCBHHHHHHHHC
T ss_pred eEEEEcCCCCEE---EcCCCCcHHHHHHHHh
Confidence 466767778654 6678899999988873
No 163
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=44.01 E-value=50 Score=19.69 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 15 TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
.+|+.. ++ +..||++|-+.+ +++ +..+-+-.+|.++.-+ ..++..+++||
T Consensus 5 vNG~~~---e~-~~~Tl~~LL~~l---------~~~--~~~vAV~vNg~iVpr~-~~~~~~L~dGD 54 (73)
T 2kl0_A 5 INGEQR---EV-QSASVAALMTEL---------DCT--GGHFAVALNYDVVPRG-KWDETPVTAGD 54 (73)
T ss_dssp ETTEEE---CC-CCSBHHHHHHHT---------TCC--SSSCEEEESSSEECHH-HHTTCBCCTTC
T ss_pred ECCEEE---Ec-CCCcHHHHHHHc---------CCC--CCcEEEEECCEECChH-HcCcccCCCCC
Confidence 367655 44 668999998877 333 4667788999987532 22334566676
No 164
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=42.16 E-value=33 Score=28.95 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=31.1
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
.+.++|.+.+|.... +.+++.+|+.+|=+.|..+
T Consensus 263 ~i~~~V~llDgt~~~-~~vds~Tt~~ell~~V~~~ 296 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKT-LLTDSATTARELCNALADK 296 (655)
T ss_dssp CEEEEEEETTSCEEE-EEECTTCBHHHHHHHHHHH
T ss_pred ceEEEEEecCCceEE-EEEccCCcHHHHHHHHHHH
Confidence 678999999999998 9999999999999999765
No 165
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=41.51 E-value=30 Score=24.23 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKE 36 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~ 36 (117)
.+.|+|. ++|+.++ +++++.+|+.++=.
T Consensus 3 ~~~i~~~-vNG~~~~-~~v~~~~tLLd~LR 30 (166)
T 1n62_A 3 KAHIELT-INGHPVE-ALVEPRTLLIHFIR 30 (166)
T ss_dssp CEEEEEE-ETTEEEE-EEECTTCBHHHHHH
T ss_pred CceEEEE-ECCEEEE-EecCCCCcHHHHHH
Confidence 3455554 4899998 89999999886533
No 166
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=41.07 E-value=31 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=20.5
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKE 36 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~ 36 (117)
...|+|. ++|+.++ ++++|.+|+.++=.
T Consensus 3 ~~~i~~~-vNG~~~~-~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 3 KKIITVN-VNGKAQE-KAVEPRTLLIHFLR 30 (163)
T ss_dssp CEEEEEE-ETTEEEE-EEECTTCBHHHHHH
T ss_pred CceEEEE-ECCEEEE-EecCCCCcHHHHHH
Confidence 3355554 4899998 89999999886533
No 167
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=39.46 E-value=38 Score=23.60 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=20.2
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATL 34 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~l 34 (117)
.+.|+|. ++|+.++ ++++|.+|+.++
T Consensus 3 ~~~i~~~-vNG~~~~-v~v~p~~tLLd~ 28 (160)
T 3hrd_D 3 KITINLN-LNGEARS-IVTEPNKRLLDL 28 (160)
T ss_dssp CEEEEEE-ETTEEEE-EEECSSSBHHHH
T ss_pred cceEEEE-ECCEEEE-EecCCCCCHHHH
Confidence 3556664 4899998 899999998875
No 168
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=38.47 E-value=44 Score=22.31 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=30.6
Q ss_pred CCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCCC
Q 033555 53 VKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPPS 96 (117)
Q Consensus 53 ~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~~~~ 96 (117)
|--+||-+-|++.+|+..=++|....| ..++.+-..-.|
T Consensus 60 PYyLRL~lP~~vved~~~~A~YD~d~g-----~~~v~lpK~~~G 98 (115)
T 3eud_A 60 PYYLRLRFPHELIDDERSTAQYDSKDE-----CINVKVAKLNKN 98 (115)
T ss_dssp TEEEEEECSSCEECSTTCEEEEETTTT-----EEEEEEEESSTT
T ss_pred CeEEEEecCcceecCCCcceEEeCCCc-----EEEEEEcCCcCC
Confidence 679999999999999987778888766 466666555444
No 169
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=38.45 E-value=38 Score=21.26 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHH
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATL 34 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~l 34 (117)
.-+.|+|...+|...+ +++.+..|+.+.
T Consensus 5 ~m~~V~~~~~~g~~~~-v~~~~g~tLL~a 32 (108)
T 2bt6_A 5 DKITVHFINRDGETLT-TKGKIGDSLLDV 32 (108)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTCBHHHH
T ss_pred ceEEEEEECCCCCEEE-EEECCCChHHHH
Confidence 3466777767898777 888999998765
No 170
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=37.97 E-value=48 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.9
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLK 35 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK 35 (117)
...|+|...+|.... +++++..|+.+.=
T Consensus 3 ~~~v~~~~~~g~~~~-~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 3 GIKVFFVTPEGREIM-IEGNEGDSILDLA 30 (103)
T ss_dssp CEEEEEECTTCCEEE-EEECTTCBHHHHH
T ss_pred ceEEEEEeCCCCEEE-EEECCCCHHHHHH
Confidence 467777767897777 8899999998763
No 171
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=37.64 E-value=42 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.0
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHH
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLK 35 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK 35 (117)
.|+|...+|.... +++.+..|+.+.=
T Consensus 2 ~vt~~~~~G~~~~-~~~~~g~tll~a~ 27 (104)
T 3lxf_A 2 AILVTTRDGTRTE-IQAEPGLSLMEAL 27 (104)
T ss_dssp EEEEECTTSCEEE-EECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCChHHHHH
Confidence 5788888999888 8999999998753
No 172
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=37.04 E-value=20 Score=24.13 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=25.2
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec
Q 033555 23 KSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~ 61 (117)
+.+-.++|+.+||..|+.+ -|+| +++|||-..
T Consensus 60 ~rv~k~~~~~~~~~~va~~-----lg~~--~~~~RlW~~ 91 (130)
T 2kvr_A 60 FKVLKNSSLAEFVQSLSQT-----MGFP--QDQIRLWPM 91 (130)
T ss_dssp EECCTTSBHHHHHHHHHHH-----HCCC--GGGCEEEEC
T ss_pred EEEeccCcHHHHHHHHHHH-----hCCC--cccEEEEEe
Confidence 5667799999999999654 3566 799999654
No 173
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=34.44 E-value=27 Score=26.29 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.7
Q ss_pred ceeEEEEEeCCCceeeeeecCC--CCcHHHHHHHh
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPA--ATSVATLKESV 38 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~--~~TV~~lK~~I 38 (117)
+-+.|+|.+.+|.... ++++. ++|+.+|-+.+
T Consensus 4 ~~~~i~V~l~dg~~~~-~~i~~~~~tt~~el~e~l 37 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRS-VELKHGNNTTVQQIMEGM 37 (322)
T ss_dssp -CCEEEEECTTSCEEE-EECTTGGGCCHHHHHTTS
T ss_pred CceEEEEEEECCcEEE-EEEcCCCCCcHHHHHHHh
Confidence 3568899999999998 99998 99999996554
No 174
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=33.01 E-value=60 Score=20.53 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.0
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
..+.|||-+.+. -+. +.++++.+..+||++|...
T Consensus 11 ~~~KVK~yy~DD-IiA-IrvP~di~~~~L~dKi~~R 44 (85)
T 1ip9_A 11 KTTKIKFYYKDD-IFA-LMLKGDTTYKELRSKIAPR 44 (85)
T ss_dssp CCEEEEECBTTC-CEE-EEECSCCCHHHHHHHHHHH
T ss_pred CceEEEEEecCc-EEE-EECCCCCCHHHHHHHHHHH
Confidence 356677766543 444 8999999999999999755
No 175
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=32.63 E-value=62 Score=23.27 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=28.8
Q ss_pred ceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 6 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 6 ~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
-.+.|+|-..+|.... +.+++++|+.+|-+.|...
T Consensus 33 ~k~~v~v~~~d~~~k~-i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKS-LMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp CEEEEEEECTTSCEEE-EEEETTCBHHHHHHHHHHH
T ss_pred cceEEEEEcCCCceEE-EEeCCCCcHHHHHHHHHHH
Confidence 3566777778898888 9999999999999988653
No 176
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=32.27 E-value=95 Score=19.51 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=26.5
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcC
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQW 42 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~w 42 (117)
.+.||+.+. |..+. +.++++.+-.+|.++|....
T Consensus 6 ~vkvK~~~~-gdi~~-~~v~~~i~~~~L~~kv~~~~ 39 (89)
T 1vd2_A 6 QVRVKAYYR-GDIMI-THFEPSISFEGLCNEVRDMC 39 (89)
T ss_dssp CEEEEEESS-SCEEE-EEECTTCCHHHHHHHHHHHT
T ss_pred eEEEEEEeC-CeEEE-EECCCCCCHHHHHHHHHHHh
Confidence 567777664 55555 89999999999999997654
No 177
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=32.22 E-value=42 Score=20.04 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=33.3
Q ss_pred eecCCCCcHHHHHHHhhhcCCCcc-------cCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 23 KSFPAATSVATLKESVLSQWPKEK-------ENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 23 l~~~~~~TV~~lK~~I~~~wp~~~-------~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
++++...||.+|.+.+..+.|.-. .++ ...+.+..+|+.....+- .+..+++||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~---~~~v~v~vN~~~v~~~~~-~~~~l~~gD 79 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNL---FKNVIILVNGNNITSMKG-LDTEIKDDD 79 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCS---TTTCEEEESSSBGGGTCS-SSCBCCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCc---CcceEEEECCEEccccCC-CCcCCCCCC
Confidence 466667899999999987754110 111 145678889987752111 123566775
No 178
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=31.32 E-value=67 Score=19.60 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=21.9
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~ 37 (117)
...|+|...+|.... +++++..|+.+.=+.
T Consensus 4 ~~~v~~~~~~~~~~~-~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGESLR-FECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEEEE-EEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCcEE-EEeCCCChHHHHHHH
Confidence 356777766677777 888999999876433
No 179
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=28.85 E-value=57 Score=22.56 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHHhhhcCCCcccC---------CCCC------CCceeEEecCeec-CCCCcccccCCCCCC
Q 033555 26 PAATSVATLKESVLSQWPKEKEN---------GPRT------VKDVKLISAGKIL-ENNRTLGECRSPLCD 80 (117)
Q Consensus 26 ~~~~TV~~lK~~I~~~wp~~~~~---------~p~~------~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~ 80 (117)
=.+.|..+|-..|.+..|+.... .|.. ...+=-++.|+-- +|++||.++++.-||
T Consensus 61 W~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGD 131 (143)
T 4a6q_A 61 WMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGD 131 (143)
T ss_dssp CTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTC
T ss_pred CCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCC
Confidence 36789999999998776653221 0110 0112224555533 688999999999887
No 180
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=28.69 E-value=1.1e+02 Score=19.75 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=25.4
Q ss_pred eeEEEEEeCC-------CceeeeeecCCCCcHHHHHHHhhhcC
Q 033555 7 QLEIKFRLTD-------GSDIGPKSFPAATSVATLKESVLSQW 42 (117)
Q Consensus 7 ~~~i~~~~~~-------G~~~~~l~~~~~~TV~~lK~~I~~~w 42 (117)
.+.||+...+ +..+. +-++++.+..+|..+|.++.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~-i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFT-LLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEE-EEECTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEE-EEecCCCCHHHHHHHHHHHH
Confidence 3566666543 43455 89999999999999997653
No 181
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=28.57 E-value=43 Score=21.74 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=25.0
Q ss_pred eEEEEEeC------CCceeeeeecCC----CCcHHHHHHHhhhcCCCc
Q 033555 8 LEIKFRLT------DGSDIGPKSFPA----ATSVATLKESVLSQWPKE 45 (117)
Q Consensus 8 ~~i~~~~~------~G~~~~~l~~~~----~~TV~~lK~~I~~~wp~~ 45 (117)
+.|++++. .|+..+ ++++. ..||.+|=+.|.+++|.+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~-v~l~~~~g~~~TV~dLl~~L~~~~~~~ 51 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTS-LQLDGVVPTGTNLNGLVQLLKTNYVKE 51 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSE-ECCCCSCGGGCCHHHHHHHHTTTTCCS
T ss_pred cEEEEEEEecHHHHhCCeEE-EEeCCcCCCCccHHHHHHHHHHHcccc
Confidence 55555553 455554 77773 359999999998887654
No 182
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.01 E-value=89 Score=20.43 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEec
Q 033555 4 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISA 61 (117)
Q Consensus 4 ~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~ 61 (117)
...+++|||-...-+.+ +.|+..-+.++|..++.+. -| ..+-|-|.
T Consensus 5 ~~~dvRiKfE~~GEkRI--i~f~RPv~f~eL~~Kv~~~-----fG-----q~ldL~y~ 50 (103)
T 2cu1_A 5 SSGDVRVKFEHRGEKRI--LQFPRPVKLEDLRSKAKIA-----FG-----QSMDLHYT 50 (103)
T ss_dssp SSCEEEEEEEETTEEEE--EEEESSCCHHHHHHHHHHH-----HS-----SCEEEEEC
T ss_pred ccCcEEEEEEecCeEEE--EeccCCccHHHHHHHHHHH-----hC-----CeeeEEEe
Confidence 45689999988655555 8999999999999999644 23 25666676
No 183
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=27.87 E-value=76 Score=19.63 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.6
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHH
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATL 34 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~l 34 (117)
.|+|...+|.... +++++..|+.+.
T Consensus 2 ~v~~~~~~g~~~~-~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHE-VEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEE-EECCTTSBHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 4667667887777 899999998765
No 184
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=27.73 E-value=77 Score=19.62 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=20.0
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHH
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLK 35 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK 35 (117)
.|+|...+|.... +++++..|+.+.=
T Consensus 2 ~V~~~~~~g~~~~-~~~~~g~tlLeaa 27 (106)
T 1xlq_A 2 KVVYVSHDGTRRE-LDVADGVSLMQAA 27 (106)
T ss_dssp EEEEECTTSCEEE-EECCTTCBHHHHH
T ss_pred EEEEEeCCCCEEE-EEECCCCcHHHHH
Confidence 4666667887777 8999999998753
No 185
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=26.77 E-value=1.2e+02 Score=18.79 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=36.9
Q ss_pred eEEEEEeC------CCceeeeeecCCCCcHHHHHHHhhhcCCCcccCC-CCC--CCce-------eEEecCeecCCCCcc
Q 033555 8 LEIKFRLT------DGSDIGPKSFPAATSVATLKESVLSQWPKEKENG-PRT--VKDV-------KLISAGKILENNRTL 71 (117)
Q Consensus 8 ~~i~~~~~------~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~-p~~--~~~q-------rLI~~Gk~L~D~~tL 71 (117)
+.|++++. .|... ++++ ..||.+|.+.+..++|.-...+ ... ...+ .+..+|+......-
T Consensus 4 m~v~V~~fa~lr~~~g~~~--~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~- 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPE--LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG- 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSE--EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-
T ss_pred eEEEEEEeHHHHHHhCCCe--EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-
Confidence 35666664 34322 3444 6899999999987765211111 000 1134 67888887632211
Q ss_pred cccCCCCCC
Q 033555 72 GECRSPLCD 80 (117)
Q Consensus 72 ~~~~i~~g~ 80 (117)
.+..+++||
T Consensus 80 ~~~~L~~gD 88 (99)
T 2l52_A 80 LETLLKDSD 88 (99)
T ss_dssp TTSCCCTTE
T ss_pred CCCCCCCCC
Confidence 123566665
No 186
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=26.73 E-value=1.2e+02 Score=24.76 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=0.0
Q ss_pred eeeeeecCCCCcHHHHHHHhhhcCCCcccCCC-CCCCceeE--EecCe---ecCCCCcccccC
Q 033555 19 DIGPKSFPAATSVATLKESVLSQWPKEKENGP-RTVKDVKL--ISAGK---ILENNRTLGECR 75 (117)
Q Consensus 19 ~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p-~~~~~qrL--I~~Gk---~L~D~~tL~~~~ 75 (117)
.+. +-++.+.||.+|-+.+ +...+++ .+.+.+|| ||+|| ++.++.+|+...
T Consensus 353 ~~~-l~vpK~gtV~Dll~~l-----~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~ 409 (530)
T 2ylm_A 353 EIT-LYPDKHGCVRDLLEEC-----KKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLS 409 (530)
T ss_dssp EEE-ECCBTTCBHHHHHHHH-----HTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSC
T ss_pred EEE-EEcCCCCCHHHHHHHH-----HHhcCCCcCCcccEEEEEEECCEEEEecCCCccccccc
No 187
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=26.35 E-value=1.3e+02 Score=19.07 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=39.4
Q ss_pred CceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 5 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 5 ~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
+-.+.|-+-.........+++++++||+++=+.+--. .....+. .+...+-.+|+....+ ..+.+||
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~--~~~peId--l~~~~V~Vng~~v~~d-----~~L~dGD 78 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL--SQFPEID--LSTNKIGIFSRPIKLT-----DVLKEGD 78 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH--HHCTTCC--TTTSEEEEEECSCCTT-----CBCCTTC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC--ccCCccc--ccccEEEEcCEECCCC-----ccCCCCC
Confidence 3345555555553333348889999999987776210 0111121 3457788888888744 3456776
No 188
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.32 E-value=96 Score=20.43 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCCceeEEEEEeCCCceeeeeecCCCCcHHHHHHHhhhc
Q 033555 3 SVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQ 41 (117)
Q Consensus 3 ~~~~~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~I~~~ 41 (117)
+.+.+++|||-....+.+ +.|+.-....+|..++...
T Consensus 27 ~~q~dvRIKfE~~gEKRI--iqf~RPvkf~dl~qkv~~a 63 (111)
T 2c60_A 27 NRQSDVRIKFEHNGERRI--IAFSRPVKYEDVEHKVTTV 63 (111)
T ss_dssp ---CCEEEEEEETTEEEE--EEECSSCCHHHHHHHHHHH
T ss_pred ccccceEEEEEecCceEE--EecCCCccHHHHHHHHHHH
Confidence 346789999998776666 7999999999999999654
No 189
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=25.64 E-value=25 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=11.5
Q ss_pred CceeEEecCeecCCCCccccc
Q 033555 54 KDVKLISAGKILENNRTLGEC 74 (117)
Q Consensus 54 ~~qrLI~~Gk~L~D~~tL~~~ 74 (117)
..+|||+.||.+...++|-..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (201)
T 2vq5_A 3 GSQKLILTGRPFLHHQGIINQ 23 (201)
T ss_dssp -CCEEEECCC------CTTGG
T ss_pred ccceeeecCCCCCChhhhhhC
Confidence 579999999988777776543
No 190
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=24.30 E-value=1.4e+02 Score=18.92 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=43.0
Q ss_pred ecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCCCCCCeEEEEEEeCCC
Q 033555 24 SFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCDIPGGVTTMHVVVQPP 95 (117)
Q Consensus 24 ~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~tmhlv~~~~ 95 (117)
.++=..++..||..+.++ -++. -+.=.+-..+..|++.++|-+-.++ |+ ..|.+.+-++..
T Consensus 8 hmDI~epL~~Lk~LLe~R-----l~i~--L~~y~f~LQd~~L~~~k~LvdQcVq-ge---GlVQinvqik~~ 68 (89)
T 2juo_A 8 AIDINEPIGNLKKLLEPR-----LQCS--LDAHEICLQDIQLDPDRSLFDQGVK-TD---GTVQLSVQVISY 68 (89)
T ss_dssp EEESSSBGGGHHHHSHHH-----HCSC--CSSCEEEETTEECCTTSBTTTSSCC-CC---SEEEEEEEEECC
T ss_pred hccccCcHHHHHHHHHHH-----hcCC--cccCeEEeeccccCCCccHHHhhcc-cc---cEEEEEEEEEec
Confidence 455667788999998654 2444 4566676788889999999998876 43 367777666654
No 191
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=23.96 E-value=79 Score=21.71 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=20.1
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHHH
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLKES 37 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~~ 37 (117)
.|+|. ++|+.++ ++++|.+|+.++=..
T Consensus 4 ~i~~~-vNG~~~~-v~~~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 4 ILRLT-LNGRARE-DLVPDNMLLLDYLRE 30 (161)
T ss_dssp EEEEE-ETTEEEE-EEEETTCBHHHHHHH
T ss_pred eEEEE-ECCEEEE-EecCCcCcHHHHHHH
Confidence 35553 4999998 899999999875444
No 192
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=23.69 E-value=94 Score=21.34 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=21.2
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATLKES 37 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~lK~~ 37 (117)
.+.|+|. .+|+.++ +++++.+|+.++=..
T Consensus 9 ~m~i~~~-ing~~~~-~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 9 LMRISAT-INGKPRV-FYVEPRMHLADALRE 37 (168)
T ss_dssp CEEEEEE-ETTEEEE-EEECTTSBHHHHHHH
T ss_pred cceEEEE-ECCEEEE-EecCCCCcHHHHHHh
Confidence 4556664 4899998 899999999865433
No 193
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=23.30 E-value=1.2e+02 Score=19.79 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=21.6
Q ss_pred eeEEEEEeCCCceeeeeecCCCCcHHHH
Q 033555 7 QLEIKFRLTDGSDIGPKSFPAATSVATL 34 (117)
Q Consensus 7 ~~~i~~~~~~G~~~~~l~~~~~~TV~~l 34 (117)
-..|+|...+|.... +++.+..|+.+.
T Consensus 21 M~~Vt~~~~~G~~~~-v~~~~G~tLL~a 47 (126)
T 3hui_A 21 MAKINFVDHTGETRT-VEVEEGATVMEA 47 (126)
T ss_dssp EEEEEEECTTSCEEE-EEEETTSBHHHH
T ss_pred ceEEEEEeCCCCEEE-EEECCCCcHHHH
Confidence 457778778898777 889999999875
No 194
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=22.16 E-value=72 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=18.0
Q ss_pred HHHHHhhhcCCCcccCCCCCCCceeEEecCeec
Q 033555 33 TLKESVLSQWPKEKENGPRTVKDVKLISAGKIL 65 (117)
Q Consensus 33 ~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L 65 (117)
++|--+..-|| -++.||+|.|-..
T Consensus 58 qik~t~~g~wp---------~s~frlv~~~~c~ 81 (115)
T 4eo0_A 58 QIKLTLSGTWP---------NSQFRLVTGDTCV 81 (115)
T ss_dssp HHHHHHHHHCT---------TCCEEEEECSSCE
T ss_pred hcccceecccC---------CceEEEEeCCcee
Confidence 56666666676 4899999999865
No 195
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=22.01 E-value=1.4e+02 Score=17.91 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=31.7
Q ss_pred CCCceeeeeecC--CCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEecCeecCCCCcccccCCCCCC
Q 033555 15 TDGSDIGPKSFP--AATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLCD 80 (117)
Q Consensus 15 ~~G~~~~~l~~~--~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 80 (117)
++|+.. +++ +..||++|-+.+--.| +..+-+-++|.++.-+ ..++..+++||
T Consensus 5 vNGe~~---e~~~~~~~Tl~~LL~~l~~~~----------~~~vAVavNg~iVpr~-~~~~~~L~dGD 58 (78)
T 2k5p_A 5 VNGKPS---TVDGAESLNVTELLSALKVAQ----------AEYVTVELNGEVLERE-AFDATTVKDGD 58 (78)
T ss_dssp ETTEEE---ECSSCSCEEHHHHHHHHTCSC----------TTTCCEEETTEECCTT-HHHHCEECSSB
T ss_pred ECCEEE---EcCCCCCCcHHHHHHHcCCCC----------CCcEEEEECCEECChH-HcCcccCCCCC
Confidence 367644 556 7789999988883222 2445577888887543 22333455565
No 196
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.78 E-value=1.1e+02 Score=18.23 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=18.4
Q ss_pred EEEEEeCCCceeeeeecCCCCcHHHHHH
Q 033555 9 EIKFRLTDGSDIGPKSFPAATSVATLKE 36 (117)
Q Consensus 9 ~i~~~~~~G~~~~~l~~~~~~TV~~lK~ 36 (117)
.|+|...+| ..+ +++++..|+.+.=.
T Consensus 3 ~v~~~~~~g-~~~-~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFT-LDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEE-EEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEE-EEeCCCCcHHHHHH
Confidence 456655677 555 78899999987643
No 197
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=20.45 E-value=1.3e+02 Score=23.48 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=39.7
Q ss_pred EEEEEe------CCCceeeeeecCCCCcHHHHHHHhhhcCCCcccCC-CCCCCceeE--Ee--cC--eecCCCCccccc
Q 033555 9 EIKFRL------TDGSDIGPKSFPAATSVATLKESVLSQWPKEKENG-PRTVKDVKL--IS--AG--KILENNRTLGEC 74 (117)
Q Consensus 9 ~i~~~~------~~G~~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~-p~~~~~qrL--I~--~G--k~L~D~~tL~~~ 74 (117)
-+|++. .+|.... +.+++++||.++=..|... ...|+ +.+++..=| .+ .| +.|+.+++|.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~k~-v~~d~~ttV~dVi~~i~~~---~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 23 ILKVCFYSNSFNPGKNFKL-VKCTVQTEIREIITSILLS---GRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp EEEEEECCSSSCGGGEEEE-EEEETTCBHHHHHHHHHHT---TTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred eEEEEecccccCCCCCeEE-EEeCCCCcHHHHHHHHHHH---hhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 456666 5677777 8999999999999998631 11221 112344444 33 12 688888888863
No 198
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=20.13 E-value=60 Score=25.03 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=38.9
Q ss_pred EEEEeCCCc----eeeeeecCCCCcHHHHHHHhhhcCCCcccCCCCCCCceeEEe--c--C--eecCCCCcccc
Q 033555 10 IKFRLTDGS----DIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLIS--A--G--KILENNRTLGE 73 (117)
Q Consensus 10 i~~~~~~G~----~~~~l~~~~~~TV~~lK~~I~~~wp~~~~~~p~~~~~qrLI~--~--G--k~L~D~~tL~~ 73 (117)
++|.+.+|. ... +.+++++|+.+|=+.|.+.. ++. +.+..=|.+ . | ..|+.+++|.+
T Consensus 10 l~V~l~~g~~~~~~~~-~~~~~~tt~~dl~~~v~~~l-----gL~-~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 10 FHYFENSSEPTTWASI-IRHGDATDVRGIIQKIVDCH-----KVK-NVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp ECCCCCSSCGGGCEEE-EEECTTCBHHHHHHHHHHHT-----TCS-CGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEEecCCCCCCceEE-EEeCCCCCHHHHHHHHHHHc-----CCC-eEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 345666776 777 99999999999999997652 342 245555544 2 2 26787777764
No 199
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=20.10 E-value=1.2e+02 Score=20.43 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=30.1
Q ss_pred CCcHHHHHHHhhhcCCCcccCCCCC-CCceeEEecCeecC-CCCcccccCCCCCC
Q 033555 28 ATSVATLKESVLSQWPKEKENGPRT-VKDVKLISAGKILE-NNRTLGECRSPLCD 80 (117)
Q Consensus 28 ~~TV~~lK~~I~~~wp~~~~~~p~~-~~~qrLI~~Gk~L~-D~~tL~~~~i~~g~ 80 (117)
..|..+|-+.|..+...+ +.+... .+.+||||.=-+=+ =+++|+++|+..|.
T Consensus 19 ~~TL~dLV~~l~~~~gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gs 72 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGS 72 (127)
T ss_dssp HCBHHHHHHHHHHHHTCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTC
T ss_pred ccCHHHHHHHHHHhcCCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCc
Confidence 357777666664432211 122211 23688888765544 35699999998763
Done!