BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033561
MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKA
VTGLTAAALTASMAAGSGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT

High Scoring Gene Products

Symbol, full name Information P value
PSBX
AT2G06520 		protein from Arabidopsis thaliana 2.6e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033561
        (116 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2054582 - symbol:PSBX "AT2G06520" species:3702...   127  2.6e-08   1


>TAIR|locus:2054582 [details] [associations]
            symbol:PSBX "AT2G06520" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0015979 "photosynthesis" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] InterPro:IPR009518 Pfam:PF06596
            EMBL:CP002685 GO:GO:0009535 GO:GO:0015979 GO:GO:0009523
            UniGene:At.49022 EMBL:AC006420 UniGene:At.20999 EMBL:AF370573
            EMBL:AK226390 IPI:IPI00540983 PIR:S70489 RefSeq:NP_565335.1
            UniGene:At.22213 UniGene:At.71077 ProteinModelPortal:Q9SKI3
            SMR:Q9SKI3 STRING:Q9SKI3 PRIDE:Q9SKI3 EnsemblPlants:AT2G06520.1
            GeneID:815210 KEGG:ath:AT2G06520 TAIR:At2g06520
            HOGENOM:HOG000242514 InParanoid:Q9SKI3 OMA:MVIPEIA PhylomeDB:Q9SKI3
            ProtClustDB:CLSN2917077 ArrayExpress:Q9SKI3 Genevestigator:Q9SKI3
            Uniprot:Q9SKI3
        Length = 116

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 47/124 (37%), Positives = 53/124 (42%)

Query:     1 MASVSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRA-RLQVQASLKEK 59
             MAS S AM L +     L Q  S  FLKPLP++PSKA    G    RA RLQV+A   +K
Sbjct:     1 MASTS-AMSLVTP----LNQTRSSPFLKPLPLKPSKALVATG---GRAQRLQVKALKMDK 52

Query:    60 AVXXXXXXXXXXXX-------XXXXXXXPSLKNFLLSXXXXXXXXXXXXXXXXXXXNFDP 112
             A+                          PSLKNFLLS                   NFDP
Sbjct:    53 ALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDP 112

Query:   113 VKRT 116
             VKRT
Sbjct:   113 VKRT 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.125   0.336    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116        78   0.00091  102 3  10 23  0.38    29
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  453 (48 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.90u 0.08s 10.98t   Elapsed:  00:00:03
  Total cpu time:  10.91u 0.08s 10.99t   Elapsed:  00:00:03
  Start:  Thu May  9 19:01:07 2013   End:  Thu May  9 19:01:10 2013

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