BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033561
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=psbX PE=3 SV=1
Length = 38
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 79 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 115
++PSL NFL S+VAG VVL A+ GA+I V+ D V+R
Sbjct: 1 MTPSLANFLWSLVAGAVVLGALFGAIIFVSQRDKVRR 37
>sp|Q2JRN5|PSBX2_SYNJA Photosystem II reaction center X protein 2 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX2 PE=3 SV=1
Length = 38
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 79 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 115
++PSL NFL S+V G VVL + GA++ V+ D V+R
Sbjct: 1 MTPSLANFLWSLVYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|Q2JRR9|PSBX1_SYNJA Photosystem II reaction center X protein 1 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX1 PE=3 SV=1
Length = 38
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 79 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 115
++PSL NFL S++ G VVL + GA++ V+ D V+R
Sbjct: 1 MTPSLANFLWSLLYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1
Length = 347
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 11/116 (9%)
Query: 4 VSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTG 63
V + L+S ++ RLI P+ +KP + ++ KP + +L +AV
Sbjct: 155 VRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQ 214
Query: 64 LTAAALTASMAAGSGLSP--------SLKNFLLSIVAGGVVLAAIVGAVIGVANFD 111
TA L S G G P L+ F + G+VL +G + G A D
Sbjct: 215 TTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVL---IGEIGGTAEED 267
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2
Length = 341
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 10 LSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAAL 69
L+S ++ RLI P+ +KP + ++ KP + +L +AV TA L
Sbjct: 156 LNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGL 215
Query: 70 TASMAAGSGLSP--------SLKNFLLSIVAGGVVLAAIVGAVIGVANFD 111
S G G P L+ F + G+VL +G + G A D
Sbjct: 216 GQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVL---IGEIGGTAEED 262
>sp|B0JX68|PSBX_MICAN Photosystem II reaction center X protein OS=Microcystis aeruginosa
(strain NIES-843) GN=psbX PE=3 SV=2
Length = 39
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 79 LSPSLKNFLLSIVAGG--VVLAAIVGAVIGVANFDPVKRT 116
++PSL NFL S+V G V++ A +G +I ++ +D +KRT
Sbjct: 1 MTPSLANFLWSLVLGAAIVLIPATIG-LIFISQYDKIKRT 39
>sp|Q9F1R6|PSBX_THEEB Photosystem II reaction center X protein OS=Thermosynechococcus
elongatus (strain BP-1) GN=psbX PE=1 SV=2
Length = 41
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 79 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 116
++PSLK F + +++G VVL +I ++ D V+R+
Sbjct: 3 ITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 40
>sp|P49509|PSBX_ODOSI Photosystem II reaction center X protein OS=Odontella sinensis
GN=psbX PE=3 SV=1
Length = 38
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 79 LSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKR 115
++PSL NF+ S+ AGG+V+ I A+I ++ D V R
Sbjct: 1 MTPSLANFISSLTAGGLVVLTIAVALIVISRTDRVTR 37
>sp|Q6ZL94|SUCA_ORYSJ Probable succinyl-CoA ligase [ADP-forming] subunit alpha,
mitochondrial OS=Oryza sativa subsp. japonica
GN=Os07g0577700 PE=1 SV=1
Length = 331
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 10 LSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAAL 69
L+ ++ RLI P+ +KP + ++ KP + +L +AV TA L
Sbjct: 146 LNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGL 205
Query: 70 TASMAAGSGLSP--------SLKNFLLSIVAGGVVLAAIVGAVIGVANFD 111
S G G P L+ F+ G+VL +G + G A D
Sbjct: 206 GQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVL---IGEIGGTAEED 252
>sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial
OS=Solanum lycopersicum GN=SCOA PE=1 SV=1
Length = 332
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 10 LSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAAL 69
L ++ RLI P+ +KP + ++ KP + +L +AV TA L
Sbjct: 148 LKKQSRTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 207
Query: 70 TASMAAGSGLSP--------SLKNFLLSIVAGGVVLAAIVGAVIGVANFD 111
S G G P L+ F+ G+VL +G + G A D
Sbjct: 208 GQSTCVGIGGDPFNGTNFVDCLEKFIADPQTEGIVL---IGEIGGTAEED 254
>sp|Q6DQL1|SUCA2_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial
OS=Solanum lycopersicum PE=1 SV=1
Length = 337
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 10 LSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAAL 69
L + RLI P+ +KP + ++ KP + +L +AV TA L
Sbjct: 153 LKKQLRTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGL 212
Query: 70 TASMAAGSGLSP--------SLKNFLLSIVAGGVVLAAIVGAVIGVANFD 111
S G G P L+ F+ G+VL +G + G A D
Sbjct: 213 GQSTCVGIGGDPFNGTNFVDCLERFIADPQTEGIVL---IGEIGGTAEED 259
>sp|Q4P0N6|NDE1_USTMA Nuclear distribution protein nudE homolog 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=NDE1 PE=3 SV=1
Length = 646
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 4 VSMAMPLSSATQNRLIQPSSESFLKPLPVRPSKAARFLGKPKSR 47
+S A ++S+T + P SE P++PS AAR +P SR
Sbjct: 206 ISRADTMASSTYDDSTAPRSEQSFDSSPIKPSSAARATERPSSR 249
>sp|P21981|TGM2_MOUSE Protein-glutamine gamma-glutamyltransferase 2 OS=Mus musculus
GN=Tgm2 PE=1 SV=4
Length = 686
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 18 LIQPSSESFLKPLPVR------PSKAARFLGKPKSRARLQVQASLKEKAVTGLTAAALTA 71
LI+P++ S+L L R P R LG+PK +L + SLK L T
Sbjct: 566 LIEPAANSYL--LAERDLYLENPEIKIRVLGEPKQNRKLVAEVSLKNPLSDPLYDCIFTV 623
Query: 72 SMAAGSGLSPSLKNFLLS--IVAGGVVLAAI 100
G+GL+ K+ +S + AG +V A +
Sbjct: 624 E---GAGLTKEQKSVEVSDPVPAGDLVKARV 651
>sp|A5GQT7|PSBX_SYNR3 Photosystem II reaction center X protein OS=Synechococcus sp.
(strain RCC307) GN=psbX PE=3 SV=1
Length = 40
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 79 LSPSLKNFLLSIVAGG-VVLAAIVGAVIGVANFDPVKR 115
++PSL NFL S+VAG +V+ I A+I ++ D V R
Sbjct: 1 MTPSLANFLNSLVAGALIVVVPITIALILISQTDQVDR 38
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.127 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,695,659
Number of Sequences: 539616
Number of extensions: 1080882
Number of successful extensions: 5579
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5566
Number of HSP's gapped (non-prelim): 30
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)