Query 033561
Match_columns 116
No_of_seqs 95 out of 97
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_X Photosystem II PSBX pro 99.8 5.2E-22 1.8E-26 122.7 2.5 39 78-116 1-39 (39)
2 3bz1_X Photosystem II PSBX pro 99.8 2.1E-21 7.2E-26 125.4 2.9 40 77-116 10-49 (50)
3 2zvk_U DNA polymerase ETA, pro 35.3 6.9 0.00024 22.1 -0.2 11 22-32 11-21 (26)
4 1nvp_C Transcription initiatio 20.1 17 0.00059 24.5 -0.5 12 105-116 34-45 (76)
5 1nh2_C Transcription initiatio 17.2 22 0.00075 24.2 -0.5 12 105-116 36-47 (79)
6 1ztd_A Hypothetical protein PF 12.6 91 0.0031 23.0 1.7 13 81-93 20-32 (133)
7 2l8s_A Integrin alpha-1; trans 12.1 1.1E+02 0.0037 19.3 1.7 26 86-111 12-37 (54)
8 2k1k_A Ephrin type-A receptor 10.7 1.3E+02 0.0046 17.3 1.7 12 88-99 14-25 (38)
9 2k1a_A Integrin alpha-IIB; sin 10.7 1.8E+02 0.0061 17.3 2.3 20 86-105 13-32 (42)
10 3hd7_A Vesicle-associated memb 10.5 1.6E+02 0.0055 19.2 2.2 26 83-108 65-90 (91)
No 1
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=99.84 E-value=5.2e-22 Score=122.67 Aligned_cols=39 Identities=33% Similarity=0.711 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhheeeeeccCcccCC
Q 033561 78 GLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 116 (116)
Q Consensus 78 ~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~ 116 (116)
.|||||+|||+||+|||+|+++|++||++|||+||++|+
T Consensus 1 ~mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D~v~R~ 39 (39)
T 3arc_X 1 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 39 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHheeEeccCccccC
Confidence 499999999999999999999999999999999999996
No 2
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=99.82 E-value=2.1e-21 Score=125.36 Aligned_cols=40 Identities=33% Similarity=0.676 Sum_probs=36.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhheeeeeccCcccCC
Q 033561 77 SGLSPSLKNFLLSIVAGGVVLAAIVGAVIGVANFDPVKRT 116 (116)
Q Consensus 77 ~~mTPSL~NFl~SLvaG~vVv~~i~~Ali~VSq~D~V~R~ 116 (116)
++|||||+|||+||+|||+|+++|++||++|||+||++|+
T Consensus 10 ~~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D~v~R~ 49 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS 49 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccCccccC
Confidence 5899999999999999999999999999999999999996
No 3
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=35.30 E-value=6.9 Score=22.07 Aligned_cols=11 Identities=55% Similarity=0.821 Sum_probs=8.9
Q ss_pred CccccccCCCC
Q 033561 22 SSESFLKPLPV 32 (116)
Q Consensus 22 ss~~~~~Plp~ 32 (116)
+-++|||||+-
T Consensus 11 TLesFFK~L~~ 21 (26)
T 2zvk_U 11 TLESFFKPLTH 21 (26)
T ss_pred cHHHHhccCCc
Confidence 46899999974
No 4
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=20.12 E-value=17 Score=24.54 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.9
Q ss_pred eeeeccCcccCC
Q 033561 105 IGVANFDPVKRT 116 (116)
Q Consensus 105 i~VSq~D~V~R~ 116 (116)
+.+.|+|||+|.
T Consensus 34 ~vlC~ydKV~R~ 45 (76)
T 1nvp_C 34 VVVCQYDKIHRS 45 (76)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEecc
Confidence 568999999984
No 5
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=17.23 E-value=22 Score=24.20 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred eeeeccCcccCC
Q 033561 105 IGVANFDPVKRT 116 (116)
Q Consensus 105 i~VSq~D~V~R~ 116 (116)
+++.|+|||+|.
T Consensus 36 ~vlC~ydKV~R~ 47 (79)
T 1nh2_C 36 LMLCLYDKVTRT 47 (79)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEeee
Confidence 678899999884
No 6
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=12.64 E-value=91 Score=23.02 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHH
Q 033561 81 PSLKNFLLSIVAG 93 (116)
Q Consensus 81 PSL~NFl~SLvaG 93 (116)
.||-||++|+..-
T Consensus 20 DSLvNfl~SlALs 32 (133)
T 1ztd_A 20 DSLINFLYSLALT 32 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999754
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=12.13 E-value=1.1e+02 Score=19.35 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhheeeeeccC
Q 033561 86 FLLSIVAGGVVLAAIVGAVIGVANFD 111 (116)
Q Consensus 86 Fl~SLvaG~vVv~~i~~Ali~VSq~D 111 (116)
.+.|++.|-+++..|+.++.=+.=|+
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GFFK 37 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGFFK 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 45677777777776776665433333
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.74 E-value=1.3e+02 Score=17.26 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 033561 88 LSIVAGGVVLAA 99 (116)
Q Consensus 88 ~SLvaG~vVv~~ 99 (116)
-.++.|.++.++
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 345555554333
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=10.67 E-value=1.8e+02 Score=17.26 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhee
Q 033561 86 FLLSIVAGGVVLAAIVGAVI 105 (116)
Q Consensus 86 Fl~SLvaG~vVv~~i~~Ali 105 (116)
.+.|++.|-+++..|...+.
T Consensus 13 Ii~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 13 VLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777666666554
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=10.50 E-value=1.6e+02 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeeee
Q 033561 83 LKNFLLSIVAGGVVLAAIVGAVIGVA 108 (116)
Q Consensus 83 L~NFl~SLvaG~vVv~~i~~Ali~VS 108 (116)
.+|+=+=++.|+++++++.+-++++.
T Consensus 65 wkn~K~~iii~~iv~~il~ii~~~~~ 90 (91)
T 3hd7_A 65 WKNLKMMIILGVICAIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Done!