Query 033561
Match_columns 116
No_of_seqs 95 out of 97
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 05:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033561.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033561hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvpc_ b.56.1.1 (C:) Large ch 31.1 3.7 0.00027 24.3 -0.5 12 105-116 5-16 (47)
2 d1nh2c_ b.56.1.1 (C:) Large ch 20.7 7.6 0.00055 23.8 -0.5 12 105-116 16-27 (59)
3 d1ztda1 a.149.1.2 (A:2-125) Hy 11.5 49 0.0036 22.5 1.7 13 81-93 11-23 (124)
4 d2vv5a3 f.34.1.1 (A:27-112) Me 9.5 1.6E+02 0.012 16.6 3.5 23 77-99 33-55 (86)
5 d1sgma2 a.121.1.1 (A:78-188) P 9.3 1.1E+02 0.008 17.3 2.6 19 81-99 73-91 (111)
6 d1nni1_ c.23.5.4 (1:) Azobenze 8.8 55 0.004 20.4 1.1 13 77-89 76-88 (171)
7 d2p6ra1 a.4.5.43 (A:404-488) H 7.5 59 0.0043 19.1 0.7 17 80-96 9-25 (85)
8 d1rtta_ c.23.5.4 (A:) Hypothet 7.4 52 0.0038 21.1 0.5 13 77-89 79-91 (174)
9 d2g7sa2 a.121.1.1 (A:77-192) P 6.3 1.8E+02 0.013 16.5 2.6 17 82-98 78-94 (116)
10 d1ppjw_ f.23.14.1 (W:) Subunit 6.2 80 0.0058 18.9 0.9 13 79-91 1-13 (62)
No 1
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.06 E-value=3.7 Score=24.29 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.1
Q ss_pred eeeeccCcccCC
Q 033561 105 IGVANFDPVKRT 116 (116)
Q Consensus 105 i~VSq~D~V~R~ 116 (116)
+.+.|+|+|.|+
T Consensus 5 ~vlc~ydKV~R~ 16 (47)
T d1nvpc_ 5 VVVCQYDKIHRS 16 (47)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEee
Confidence 578999999984
No 2
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.71 E-value=7.6 Score=23.76 Aligned_cols=12 Identities=33% Similarity=0.515 Sum_probs=9.9
Q ss_pred eeeeccCcccCC
Q 033561 105 IGVANFDPVKRT 116 (116)
Q Consensus 105 i~VSq~D~V~R~ 116 (116)
+.+.|+|+|.|.
T Consensus 16 ~vlc~yDKV~R~ 27 (59)
T d1nh2c_ 16 LMLCLYDKVTRT 27 (59)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEeec
Confidence 578899999884
No 3
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}
Probab=11.51 E-value=49 Score=22.47 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHH
Q 033561 81 PSLKNFLLSIVAG 93 (116)
Q Consensus 81 PSL~NFl~SLvaG 93 (116)
.||-||++|+..-
T Consensus 11 DSLiNfl~SlALt 23 (124)
T d1ztda1 11 DSLINFLYSLALT 23 (124)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999764
No 4
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.50 E-value=1.6e+02 Score=16.61 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=17.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH
Q 033561 77 SGLSPSLKNFLLSIVAGGVVLAA 99 (116)
Q Consensus 77 ~~mTPSL~NFl~SLvaG~vVv~~ 99 (116)
..+++++.+|+..++--.+.+..
T Consensus 33 ~~~~~~~~~~i~~~~~~~i~~i~ 55 (86)
T d2vv5a3 33 RKIDATVADFLSALVRYGIIAFT 55 (86)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHH
Confidence 46889999999988877666544
No 5
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=9.34 E-value=1.1e+02 Score=17.30 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033561 81 PSLKNFLLSIVAGGVVLAA 99 (116)
Q Consensus 81 PSL~NFl~SLvaG~vVv~~ 99 (116)
..|+.|+++++-|+.+..=
T Consensus 73 ~~lA~~l~~~~~Ga~~~ar 91 (111)
T d1sgma2 73 NQLGTLINSMIEGGIMLSL 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999998753
No 6
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}
Probab=8.82 E-value=55 Score=20.40 Aligned_cols=13 Identities=54% Similarity=0.493 Sum_probs=11.0
Q ss_pred CCCChhHHHHHHH
Q 033561 77 SGLSPSLKNFLLS 89 (116)
Q Consensus 77 ~~mTPSL~NFl~S 89 (116)
.++++.|||||=-
T Consensus 76 ~~~~~~lKn~iD~ 88 (171)
T d1nni1_ 76 SGMSGALKNALDF 88 (171)
T ss_dssp TBCCHHHHHHHHH
T ss_pred cccchhHhHHHHH
Confidence 4799999999863
No 7
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.51 E-value=59 Score=19.07 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHHHHH
Q 033561 80 SPSLKNFLLSIVAGGVV 96 (116)
Q Consensus 80 TPSL~NFl~SLvaG~vV 96 (116)
.++|.+.+++.++.|.|
T Consensus 9 ~~~L~~hllaeIasg~i 25 (85)
T d2p6ra1 9 ETHLRFHSLSIICDGYA 25 (85)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 36899999999988764
No 8
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.42 E-value=52 Score=21.14 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=10.9
Q ss_pred CCCChhHHHHHHH
Q 033561 77 SGLSPSLKNFLLS 89 (116)
Q Consensus 77 ~~mTPSL~NFl~S 89 (116)
.+|++.|||||==
T Consensus 79 ~s~~~~lKn~iD~ 91 (174)
T d1rtta_ 79 YSMAGVLKNAIDW 91 (174)
T ss_dssp TEECHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 4799999999953
No 9
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.26 E-value=1.8e+02 Score=16.51 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 033561 82 SLKNFLLSIVAGGVVLA 98 (116)
Q Consensus 82 SL~NFl~SLvaG~vVv~ 98 (116)
.+..++++.+-|++++.
T Consensus 78 ~lA~~l~~~~~G~~~~a 94 (116)
T d2g7sa2 78 ANAEIFMATVHGAMLSA 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38999999999999874
No 10
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.21 E-value=80 Score=18.88 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=8.1
Q ss_pred CChhHHHHHHHHH
Q 033561 79 LSPSLKNFLLSIV 91 (116)
Q Consensus 79 mTPSL~NFl~SLv 91 (116)
+.|||.+-|+.++
T Consensus 1 ~~psl~~~lYn~l 13 (62)
T d1ppjw_ 1 VAPTLTARLYSLL 13 (62)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHH
Confidence 3577777666554
Done!