Query 033562
Match_columns 116
No_of_seqs 102 out of 484
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_K DNA-directed RNA polyme 100.0 2.8E-51 9.4E-56 292.4 12.2 113 1-114 1-113 (123)
2 1twf_K B13.6, DNA-directed RNA 100.0 1E-50 3.5E-55 288.3 12.4 114 1-114 1-116 (120)
3 1xpp_A TA1416, DNA-directed RN 100.0 3.4E-40 1.2E-44 232.7 11.8 102 12-114 4-105 (115)
4 2pa8_L DNA-directed RNA polyme 100.0 1.6E-38 5.4E-43 216.3 11.2 89 22-110 4-92 (92)
5 2pa8_D DNA-directed RNA polyme 94.6 0.027 9.2E-07 43.3 3.6 29 27-55 9-38 (265)
6 1twf_C B44.5, DNA-directed RNA 94.2 0.12 3.9E-06 41.3 6.7 41 68-108 225-265 (318)
7 1bdf_A RNA polymerase alpha su 92.8 0.12 4.1E-06 39.4 4.5 47 56-102 180-232 (235)
8 3lu0_A DNA-directed RNA polyme 92.6 0.091 3.1E-06 42.2 3.7 48 54-101 178-231 (329)
9 2pa8_D DNA-directed RNA polyme 92.5 0.22 7.5E-06 38.1 5.6 41 68-108 223-263 (265)
10 2a6h_A DNA-directed RNA polyme 92.3 0.19 6.4E-06 40.0 5.0 46 56-101 174-225 (315)
11 1bdf_A RNA polymerase alpha su 92.2 0.14 4.7E-06 39.0 4.1 43 18-62 13-60 (235)
12 2a6h_A DNA-directed RNA polyme 91.6 0.11 3.9E-06 41.3 3.1 36 19-56 11-51 (315)
13 1twf_C B44.5, DNA-directed RNA 91.0 0.095 3.2E-06 41.8 2.1 36 18-55 7-43 (318)
14 3h0g_C DNA-directed RNA polyme 90.8 0.22 7.5E-06 39.4 4.0 40 68-107 226-265 (297)
15 3h0g_C DNA-directed RNA polyme 90.0 0.27 9.1E-06 38.9 3.8 37 17-55 5-42 (297)
16 3lu0_A DNA-directed RNA polyme 88.5 0.3 1E-05 39.2 3.1 34 27-60 20-58 (329)
17 3mq9_A Bone marrow stromal ant 45.8 35 0.0012 27.1 5.3 35 79-113 367-410 (471)
18 3ba3_A Protein LP_0091, pyrido 42.7 25 0.00085 24.4 3.6 32 44-76 52-83 (145)
19 3ljm_A Coil Ser L9C; de novo d 36.8 47 0.0016 17.3 4.0 24 84-107 3-26 (31)
20 4aq4_A SN-glycerol-3-phosphate 33.8 35 0.0012 25.5 3.4 18 79-96 391-408 (419)
21 1p6f_A NKP46, natural cytotoxi 30.4 11 0.00037 27.2 0.0 13 38-50 228-240 (242)
22 2f6m_B Vacuolar protein sortin 29.3 1E+02 0.0035 20.7 4.8 24 79-103 51-74 (109)
23 1tke_A Threonyl-tRNA synthetas 29.0 1.3E+02 0.0044 21.6 5.8 53 40-95 73-128 (224)
24 3iot_A Maltose-binding protein 29.0 97 0.0033 23.9 5.4 35 79-113 353-388 (449)
25 3n94_A Fusion protein of malto 28.6 75 0.0026 24.8 4.7 32 79-110 355-386 (475)
26 3u7z_A Putative metal binding 27.2 1.1E+02 0.0039 20.0 4.7 37 14-50 4-40 (101)
27 2qn6_B Translation initiation 25.9 68 0.0023 20.7 3.3 40 58-100 44-83 (93)
28 1y80_A Predicted cobalamin bin 24.8 60 0.002 22.9 3.2 38 28-65 89-128 (210)
29 3pbp_B Nucleoporin NUP116/NSP1 24.7 89 0.003 21.9 4.0 30 39-68 108-146 (148)
30 1uct_A Immunoglobulin alpha FC 24.7 33 0.0011 23.9 1.7 22 28-49 189-213 (218)
31 4ano_A ESSB; membrane protein, 24.1 12 0.00042 28.0 -0.7 61 25-88 20-80 (219)
32 2yxb_A Coenzyme B12-dependent 23.9 1.2E+02 0.0041 20.8 4.6 38 27-64 18-57 (161)
33 3swy_A Cyclic nucleotide-gated 22.9 1.2E+02 0.0039 17.4 4.2 27 87-113 3-29 (46)
34 2wnr_B Probable exosome comple 22.8 1.5E+02 0.0053 21.4 5.2 39 73-112 199-237 (240)
35 3v26_X ORF3, ORF95, probable s 22.6 1.5E+02 0.0051 18.9 4.6 34 72-106 60-93 (101)
36 2r55_A STAR-related lipid tran 22.4 2.1E+02 0.007 20.1 5.9 54 57-113 172-230 (231)
37 2wkb_A Macrophage migration in 22.1 1.6E+02 0.0056 18.9 4.8 25 71-95 1-27 (125)
38 2wp8_B Exosome complex compone 21.8 2.1E+02 0.0071 20.7 5.8 40 73-113 197-236 (246)
39 3ezx_A MMCP 1, monomethylamine 21.7 67 0.0023 23.2 3.0 37 28-64 93-131 (215)
40 1c1y_B Proto-onkogene serine/t 21.5 78 0.0027 20.1 2.9 19 74-92 15-33 (77)
41 3dhx_A Methionine import ATP-b 21.4 80 0.0027 20.3 3.0 37 30-66 66-102 (106)
42 2i2x_B MTAC, methyltransferase 21.4 95 0.0032 22.9 3.8 40 27-66 123-164 (258)
43 2po1_A Probable exosome comple 21.1 1.6E+02 0.0055 21.4 5.0 38 74-112 200-237 (249)
44 3cra_A Protein MAZG; tandem-re 20.8 1.4E+02 0.0048 22.9 4.7 27 80-106 211-237 (265)
45 1vq3_A Phosphoribosylformylgly 20.7 1.2E+02 0.0042 19.6 3.8 26 69-94 16-43 (94)
46 1t4b_A Aspartate-semialdehyde 20.7 3E+02 0.01 21.5 6.8 55 37-92 235-296 (367)
47 2je6_B RRP41, exosome complex 20.7 1.9E+02 0.0065 21.0 5.4 40 73-113 203-242 (250)
48 2nn6_B Exosome complex exonucl 20.5 1.3E+02 0.0044 22.0 4.4 41 72-113 200-240 (249)
49 2nn6_D Exosome complex exonucl 20.1 1.9E+02 0.0066 20.8 5.3 37 75-112 197-233 (237)
No 1
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-51 Score=292.38 Aligned_cols=113 Identities=44% Similarity=0.656 Sum_probs=111.1
Q ss_pred CCCCccccceeeCCCCeeeEeeccCCCcceeEEEEecCCcchHHHHHHHhhcCCCeeeeeecCCCCCCceeEEEEEeCCC
Q 033562 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80 (116)
Q Consensus 1 ~n~p~~~~~~~l~~~~~Kv~~~~~~k~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~ipHPl~~~i~lrIqt~~~ 80 (116)
||||||||+|+| +|++||++.+|+|++|+++|+|.+|||||||+||++|+++|+|.||||+|||||+++++|||||+++
T Consensus 1 mnap~~~e~f~l-~ge~Kv~~~~dtk~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPle~~~~lrIqT~~~ 79 (123)
T 3h0g_K 1 MNQPERYELIEL-MGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVED 79 (123)
T ss_dssp CCCCCGGGTSSC-SSCCSCCEEECSSSTTEEEEEEESCCSSHHHHHHHTGGGSTTCSCBCCBCSCTTSCEEEEEEECCSS
T ss_pred CCCCCccceeEe-CCCcceEEecCCCCCceEEEEEeCCCcchHHHHHHHHhcCCCeeEeeecCCCCCCCceEEEEEECCC
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 033562 81 SSPMQAYNQAINDLDKELDTLKSAFEAELAKHSR 114 (116)
Q Consensus 81 ~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~~~ 114 (116)
++|.+||++|+++|++.|++++++|.++++.++.
T Consensus 80 ~~p~eaL~~al~~L~~~~~~l~~~F~~~~~~~~~ 113 (123)
T 3h0g_K 80 CSPKQVIVDAAKSLITHLEEIKVNFMREWELKMI 113 (123)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998764
No 2
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=100.00 E-value=1e-50 Score=288.28 Aligned_cols=114 Identities=42% Similarity=0.678 Sum_probs=110.1
Q ss_pred CCCCccccceeeCCCCeeeEeeccCCCcceeEEEEecCCcchHHHHHHHhhcCCCeeeeeecCCCCCCceeEEEEEeCCC
Q 033562 1 MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQ 80 (116)
Q Consensus 1 ~n~p~~~~~~~l~~~~~Kv~~~~~~k~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~ipHPl~~~i~lrIqt~~~ 80 (116)
||||||||+|+||+|++|+++..+++.+|+++|+|.||||||||+||++|+++|+|.||||+|||||+++++|||||+|+
T Consensus 1 mnap~~~e~f~l~~ge~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vpHPl~~~~~lrIqT~~~ 80 (120)
T 1twf_K 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEG 80 (120)
T ss_dssp CCSCCSGGGTSCCTTCCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSCTTSCEEEEEEEECTT
T ss_pred CCCCCccceeecCCCCceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecCCCCCCccEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhc
Q 033562 81 SSPMQAYNQAINDLDKELDTLKSAFEA--ELAKHSR 114 (116)
Q Consensus 81 ~~p~e~l~~a~~~l~~~~~~l~~~f~~--a~~~~~~ 114 (116)
.+|.+||++|+++|++.|++++++|++ ++++|..
T Consensus 81 ~~p~eaL~~a~~~L~~~~~~l~~~f~~e~~~~~~~~ 116 (120)
T 1twf_K 81 YDPKDALKNACNSIINKLGALKTNFETEWNLQTLAA 116 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999 7777654
No 3
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=100.00 E-value=3.4e-40 Score=232.75 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=94.9
Q ss_pred eCCCCeeeEeeccCCCcceeEEEEecCCcchHHHHHHHhhcCCCeeeeeecCCCCCCceeEEEEEeCCCCCHHHHHHHHH
Q 033562 12 VPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAI 91 (116)
Q Consensus 12 l~~~~~Kv~~~~~~k~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~ipHPl~~~i~lrIqt~~~~~p~e~l~~a~ 91 (116)
-|+|++|+++..+++.+|+++|+|.+|||||||+||+.|+++|+|.||||+|||||+++++|||||+|+. |.+||++|+
T Consensus 4 ~~~~~~kmeiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vpHPle~~~~lrIqT~~~~-p~eaL~~al 82 (115)
T 1xpp_A 4 QRERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVKSGK-PQSAIKRAV 82 (115)
T ss_dssp -----CCCEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECSSTTTSCCEEEEEESSSC-HHHHHHHHH
T ss_pred ccccccceEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecCCCCCCccEEEEEeCCCC-hHHHHHHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 033562 92 NDLDKELDTLKSAFEAELAKHSR 114 (116)
Q Consensus 92 ~~l~~~~~~l~~~f~~a~~~~~~ 114 (116)
++|.+.|++|+++|++++++|+.
T Consensus 83 ~~L~~~~~~l~~~f~~a~~~~~~ 105 (115)
T 1xpp_A 83 RKLSKLYEDLGTQFQKEFQRYES 105 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhch
Confidence 99999999999999999998853
No 4
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=100.00 E-value=1.6e-38 Score=216.27 Aligned_cols=89 Identities=31% Similarity=0.401 Sum_probs=84.9
Q ss_pred eccCCCcceeEEEEecCCcchHHHHHHHhhcCCCeeeeeecCCCCCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033562 22 ERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (116)
Q Consensus 22 ~~~~k~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~ipHPl~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l 101 (116)
...++.+|+++|+|.||||||||+||+.|+++|+|.||||+|||||+++++|||||+++.+|.+||++|+++|.+.|+++
T Consensus 4 kvi~k~~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vpHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~~ 83 (92)
T 2pa8_L 4 RILKSESNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHY 83 (92)
T ss_dssp EEEEEETTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 033562 102 KSAFEAELA 110 (116)
Q Consensus 102 ~~~f~~a~~ 110 (116)
+++|+++++
T Consensus 84 ~~~f~~~~k 92 (92)
T 2pa8_L 84 IDEIKGLTK 92 (92)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999874
No 5
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=94.58 E-value=0.027 Score=43.28 Aligned_cols=29 Identities=10% Similarity=-0.146 Sum_probs=22.5
Q ss_pred CcceeEEEEecCCcchHHHHHHHhhcC-CC
Q 033562 27 IINAASFTIEREEHTIGNILRMQLHRD-EN 55 (116)
Q Consensus 27 ~~n~~~~~i~~EDHTLgNlLr~~L~~~-~~ 55 (116)
.++.+.|.+.|-|+||||.||-.|+.. |+
T Consensus 9 ~~~~~~f~l~g~~~t~~NalRRills~vp~ 38 (265)
T 2pa8_D 9 DDTRIDLVFEGYPLEFVNAIRRASMLYVPI 38 (265)
T ss_dssp CSSEEEEEEESSCHHHHHHHHHHHHHSCCE
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHcCcc
Confidence 366788888888888888888877763 44
No 6
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=94.24 E-value=0.12 Score=41.29 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=37.7
Q ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAE 108 (116)
Q Consensus 68 ~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a 108 (116)
.++..|.|-|+|.++|.+||.+|++-|.+.|+.|.+.+...
T Consensus 225 ~dkfif~VET~Gsi~Peeav~~A~kIL~~kl~~f~~~l~~~ 265 (318)
T 1twf_C 225 ADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQM 265 (318)
T ss_dssp CCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999887654
No 7
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=92.83 E-value=0.12 Score=39.36 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=38.2
Q ss_pred eeeeeecCCCC------CCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033562 56 VLFAGYKLPHP------LQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLK 102 (116)
Q Consensus 56 V~fAgY~ipHP------l~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~ 102 (116)
|.-+.|+++-. -.++..+.|-|+|+.+|.+||.+|++-|.+.|+.|.
T Consensus 180 v~~v~y~ve~~~v~~~~~~d~li~eIeT~Gsi~P~eal~~A~~iL~~~~~~f~ 232 (235)
T 1bdf_A 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV 232 (235)
T ss_dssp EEEEEEECCBCCCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGGC
T ss_pred EEEEEEEccCccccccccCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 45577776422 247899999999999999999999999998887664
No 8
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=92.62 E-value=0.091 Score=42.18 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=38.6
Q ss_pred CCeeeeeecCC-----CCC-CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033562 54 ENVLFAGYKLP-----HPL-QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (116)
Q Consensus 54 ~~V~fAgY~ip-----HPl-~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l 101 (116)
.=|.-+.|.|. ... .++..+-|.|+|+++|.+||..|++-|.+.+.-|
T Consensus 178 sPV~~Vny~Ve~~rvgq~td~dkL~leI~TdGsi~P~eAl~~Aa~iL~~~l~~f 231 (329)
T 3lu0_A 178 SPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 231 (329)
T ss_dssp CCEEEEEEEEEEECCSSCSCEEEEEEEEEECSSSCHHHHHHHHHHHHHHHTTTS
T ss_pred CceeeEEEEEeccccCCCcccceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34666777654 333 5899999999999999999999999999877654
No 9
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=92.54 E-value=0.22 Score=38.10 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=36.9
Q ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAE 108 (116)
Q Consensus 68 ~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a 108 (116)
.++..+.|.|+|..+|.+++..|++-|.+.++.|.+.+...
T Consensus 223 ~d~~i~~VEt~Gsl~Pee~v~~A~~iL~~~~~~~~~~l~~~ 263 (265)
T 2pa8_D 223 EDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVEV 263 (265)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999888664
No 10
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=92.26 E-value=0.19 Score=40.02 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=38.1
Q ss_pred eeeeeecCC------CCCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q 033562 56 VLFAGYKLP------HPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTL 101 (116)
Q Consensus 56 V~fAgY~ip------HPl~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l 101 (116)
|.-+.|.+. -.-.++..+.|-|+|+.+|.+||.+|++-|.+.|+.|
T Consensus 174 v~~v~y~ve~~rv~~~~~~dkli~eIeT~Gsi~P~eal~~A~~iL~~~l~~f 225 (315)
T 2a6h_A 174 VRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYF 225 (315)
T ss_dssp EEEEEEEEEECCBTTBCCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred ceeEEEEeeeeeecccccccEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455667653 1235889999999999999999999999999999877
No 11
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble; 2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Probab=92.22 E-value=0.14 Score=39.04 Aligned_cols=43 Identities=28% Similarity=0.233 Sum_probs=32.0
Q ss_pred eeEeeccCCCcceeEEEEe----cCCcchHHHHHHHhhc-CCCeeeeeec
Q 033562 18 KVSYERDTKIINAASFTIE----REEHTIGNILRMQLHR-DENVLFAGYK 62 (116)
Q Consensus 18 Kv~~~~~~k~~n~~~~~i~----~EDHTLgNlLr~~L~~-~~~V~fAgY~ 62 (116)
+|++... .++.+.|.+. |.++||||.||-.|+. .|+.-.-+-+
T Consensus 13 ~i~i~~~--~~~~~~F~l~Ple~G~~~tlgNaLRRiLLsevpg~AI~~V~ 60 (235)
T 1bdf_A 13 LVDIEQV--SSTHAKVTLEPLERGFGHTLGNALRAILLSSMPGCAVTEVE 60 (235)
T ss_dssp EEEEEES--SSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred eEEEEEc--cCCEEEEEEEecCCCCchHHHHHHHHHHHhcCCceEEEEEE
Confidence 3555543 4678999996 9999999999999988 4765444433
No 12
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=91.62 E-value=0.11 Score=41.25 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=28.3
Q ss_pred eEeeccCCCcceeEEEE----ecCCcchHHHHHHHhhcC-CCe
Q 033562 19 VSYERDTKIINAASFTI----EREEHTIGNILRMQLHRD-ENV 56 (116)
Q Consensus 19 v~~~~~~k~~n~~~~~i----~~EDHTLgNlLr~~L~~~-~~V 56 (116)
|++... ..+.+.|.+ .|.++||||+||-.|+.. |+.
T Consensus 11 i~i~~~--~~~~~~F~l~Ple~G~~~TlgNaLRRiLLsevpg~ 51 (315)
T 2a6h_A 11 FTVRTQ--GREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGT 51 (315)
T ss_dssp EEEEEE--TTTEEEEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEc--cCCEEEEEEEccCCCchhHHHHHHHHHHHhcCCce
Confidence 555433 367899999 599999999999999884 553
No 13
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=91.03 E-value=0.095 Score=41.77 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=28.2
Q ss_pred eeEeeccCCCcceeEEEEecCCcchHHHHHHHhhcC-CC
Q 033562 18 KVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD-EN 55 (116)
Q Consensus 18 Kv~~~~~~k~~n~~~~~i~~EDHTLgNlLr~~L~~~-~~ 55 (116)
+|++.. ..++.+.|.+.|-|+||||.||-.|+.. |+
T Consensus 7 ~I~i~~--~~~~~~kF~leG~~~tlaNALRRiLLSevPg 43 (318)
T 1twf_C 7 QVKIRE--ASKDNVDFILSNVDLAMANSLRRVMIAEIPT 43 (318)
T ss_dssp BCCCSC--CCSSEECCEEBSSCHHHHHHHHHHHHHCCCE
T ss_pred eEEEEE--ecCCEEEEEEEccChhHHHHHHHHHHHcCcc
Confidence 444443 3477899999999999999999988874 54
No 14
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.81 E-value=0.22 Score=39.42 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=36.8
Q ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 68 QYKIIVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEA 107 (116)
Q Consensus 68 ~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~ 107 (116)
.++..+.|.|+|..+|.+++.+|++-|.+.++.|.+.+++
T Consensus 226 ~dkfif~VET~Gsl~p~eiv~~A~~iL~~kl~~f~~~L~~ 265 (297)
T 3h0g_C 226 PRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDE 265 (297)
T ss_dssp CCCEEEEEEBCSSSCTTTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999887753
No 15
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.99 E-value=0.27 Score=38.92 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=29.7
Q ss_pred eeeEeeccCCCcceeEEEEecCCcchHHHHHHHhhcC-CC
Q 033562 17 KKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRD-EN 55 (116)
Q Consensus 17 ~Kv~~~~~~k~~n~~~~~i~~EDHTLgNlLr~~L~~~-~~ 55 (116)
.+|++.. ..++.+.|.+.|-|.||||.||-.|+.. |.
T Consensus 5 p~I~i~~--~~~~~~~F~l~g~~~tiaNALRRiLLSeVPt 42 (297)
T 3h0g_C 5 THITIRN--ISKNSVDFVLTNTSLAVANSLRRVVLAEIPT 42 (297)
T ss_dssp CSBCCCC--BCSSEEEEEECSCCHHHHHHHHHHHHSSCCE
T ss_pred CeEEEEE--ccCCEEEEEEECCChhHHHHHHHHHHHcCcc
Confidence 4555554 3458999999999999999999999884 55
No 16
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=88.51 E-value=0.3 Score=39.18 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=27.9
Q ss_pred CcceeEEEEe----cCCcchHHHHHHHhhcC-CCeeeee
Q 033562 27 IINAASFTIE----REEHTIGNILRMQLHRD-ENVLFAG 60 (116)
Q Consensus 27 ~~n~~~~~i~----~EDHTLgNlLr~~L~~~-~~V~fAg 60 (116)
..+.+.|.+. |.++||||.||-.|+.. |+.-.-+
T Consensus 20 ~~~~~kF~l~PlerG~g~TlgNaLRRvLLssvpg~AIt~ 58 (329)
T 3lu0_A 20 SSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58 (329)
T ss_dssp TTSEEEEEECCCCTTCHHHHHHHHHHHTTTSSCEEEEEE
T ss_pred CCCEEEEEEEecCCCChhHHHHHHHHHHHhcCCceEEEE
Confidence 4689999998 99999999999999984 6644333
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=45.77 E-value=35 Score=27.06 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhhh
Q 033562 79 SQSSPMQAYNQAINDLDKELDTLKSA---------FEAELAKHS 113 (116)
Q Consensus 79 ~~~~p~e~l~~a~~~l~~~~~~l~~~---------f~~a~~~~~ 113 (116)
|+.+|.+||+++.+.+.+.++..+.. +.+.+.+++
T Consensus 367 G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~ 410 (471)
T 3mq9_A 367 GRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQ 410 (471)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHh
Confidence 45689999999999988888877766 555555544
No 18
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1}
Probab=42.72 E-value=25 Score=24.42 Aligned_cols=32 Identities=6% Similarity=-0.021 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCCeeeeeecCCCCCCceeEEEEE
Q 033562 44 NILRMQLHRDENVLFAGYKLPHPLQYKIIVRIH 76 (116)
Q Consensus 44 NlLr~~L~~~~~V~fAgY~ipHPl~~~i~lrIq 76 (116)
.---..|.++|+|.++++.-.-+- +..+||++
T Consensus 52 k~k~~ql~~Np~V~i~~~~~d~~~-~~~~IRi~ 83 (145)
T 3ba3_A 52 SPALKVYDQNPDIAFITIPNDGTA-GNPYLRAQ 83 (145)
T ss_dssp CTHHHHHTTCCEEEEEEEECTTCT-TCCEEEEE
T ss_pred CHHHHHHHhCCCEEEEEECCCCCc-cceEEEEE
Confidence 345678999999999999744333 46777776
No 19
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=36.80 E-value=47 Score=17.31 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 84 MQAYNQAINDLDKELDTLKSAFEA 107 (116)
Q Consensus 84 ~e~l~~a~~~l~~~~~~l~~~f~~ 107 (116)
-+||.+-|..|.+.++.++++++.
T Consensus 3 wealekkcaalesklqalekklea 26 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888888888877653
No 20
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=33.81 E-value=35 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 033562 79 SQSSPMQAYNQAINDLDK 96 (116)
Q Consensus 79 ~~~~p~e~l~~a~~~l~~ 96 (116)
|+.+|.+||+++.+.+.+
T Consensus 391 g~~t~e~al~~~~~~~~~ 408 (419)
T 4aq4_A 391 GKKTPQQALDTAVERGNQ 408 (419)
T ss_dssp TSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 334555555554444333
No 21
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=30.42 E-value=11 Score=27.20 Aligned_cols=13 Identities=54% Similarity=0.711 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHh
Q 033562 38 EEHTIGNILRMQL 50 (116)
Q Consensus 38 EDHTLgNlLr~~L 50 (116)
.|||++||||..|
T Consensus 228 ~~~~~~nl~r~~~ 240 (242)
T 1p6f_A 228 WDHTAQNLLRMGL 240 (242)
T ss_dssp -------------
T ss_pred ccchheeeeEEEe
Confidence 4999999998765
No 22
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=29.30 E-value=1e+02 Score=20.68 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 033562 79 SQSSPMQAYNQAINDLDKELDTLKS 103 (116)
Q Consensus 79 ~~~~p~e~l~~a~~~l~~~~~~l~~ 103 (116)
+.+++.+ -..+|.+|+..+..+.+
T Consensus 51 D~It~~e-Yt~~c~rLL~QyKt~~~ 74 (109)
T 2f6m_B 51 DSIDDTQ-YTNTVDKLLKQFKVYLN 74 (109)
T ss_dssp TCSCHHH-HHHHHHHHHHHHHHHHT
T ss_pred cCCCHHH-HHHHHHHHHHHHHHHHh
Confidence 4566655 88889999988886665
No 23
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=29.05 E-value=1.3e+02 Score=21.57 Aligned_cols=53 Identities=8% Similarity=0.151 Sum_probs=34.6
Q ss_pred cchHHHHHHHhhc-CCCeeeeeecCCCCCCceeEEEEEeCCCCCHH--HHHHHHHHHHH
Q 033562 40 HTIGNILRMQLHR-DENVLFAGYKLPHPLQYKIIVRIHTTSQSSPM--QAYNQAINDLD 95 (116)
Q Consensus 40 HTLgNlLr~~L~~-~~~V~fAgY~ipHPl~~~i~lrIqt~~~~~p~--e~l~~a~~~l~ 95 (116)
||...+|...+.+ .|++. ..+-|++.+.....+......++. +.+++-+++++
T Consensus 73 HS~~HlL~~A~~~~~~~~~---~~~g~~~~~g~y~d~~~~~~~t~edl~~IE~~m~~iI 128 (224)
T 1tke_A 73 HSCAHLLGHAIKQLWPHTK---MAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELA 128 (224)
T ss_dssp HHHHHHHHHHHHHHSTTCE---ECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcE---EEECCccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 7999999999888 46544 344667778788888766556653 33444444443
No 24
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=29.04 E-value=97 Score=23.91 Aligned_cols=35 Identities=9% Similarity=-0.127 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 033562 79 SQSSPMQAYNQAINDLDKEL-DTLKSAFEAELAKHS 113 (116)
Q Consensus 79 ~~~~p~e~l~~a~~~l~~~~-~~l~~~f~~a~~~~~ 113 (116)
|..+|.+||+++.+.+.+.. ....+++....+.++
T Consensus 353 G~~~~eeal~~~~~~~~~i~~~~~~~~~~~~~~~~~ 388 (449)
T 3iot_A 353 GRQTVDAALAAAQTNAAAMATLEKLMKAFESLKSFQ 388 (449)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 45689999998888887766 334455555565553
No 25
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=28.56 E-value=75 Score=24.78 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 79 SQSSPMQAYNQAINDLDKELDTLKSAFEAELA 110 (116)
Q Consensus 79 ~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~ 110 (116)
|+.+|.+||+++.+.+.+.+..++++-+..++
T Consensus 355 G~~t~eeal~~~~~~~~~~l~~l~~e~~~C~~ 386 (475)
T 3n94_A 355 GRQTVDEALKDAQTNAAAEFAIFKKEQAMCLE 386 (475)
T ss_dssp TSSCHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999998888888888776555544
No 26
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=27.23 E-value=1.1e+02 Score=20.00 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCCeeeEeeccCCCcceeEEEEecCCcchHHHHHHHh
Q 033562 14 EGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQL 50 (116)
Q Consensus 14 ~~~~Kv~~~~~~k~~n~~~~~i~~EDHTLgNlLr~~L 50 (116)
.|++++++..-.......+|.+.-+..||+.+|...=
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESEN 40 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTT
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcC
Confidence 5788888876655556778888888899999996543
No 27
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=25.90 E-value=68 Score=20.70 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=23.9
Q ss_pred eeeecCCCCCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 033562 58 FAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDT 100 (116)
Q Consensus 58 fAgY~ipHPl~~~i~lrIqt~~~~~p~e~l~~a~~~l~~~~~~ 100 (116)
.-=|.|-=| .-.|++++..--...++|++|++.+.+.++.
T Consensus 44 vkI~~vgaP---~Y~i~~~~~D~k~ge~~L~~ai~~i~~~i~~ 83 (93)
T 2qn6_B 44 IKIYTIGAP---RYRVDVVGTNPKEASEALNQIISNLIKIGKE 83 (93)
T ss_dssp EEEEESSTT---EEEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCC---eEEEEEEecCHHHHHHHHHHHHHHHHHHHHH
Confidence 334555433 3466677654445667788888777766554
No 28
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.83 E-value=60 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=26.5
Q ss_pred cceeEEEEecCCcchHHHHHHHhhcCCC--eeeeeecCCC
Q 033562 28 INAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLPH 65 (116)
Q Consensus 28 ~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~ipH 65 (116)
+.-+..+..+|-|++|-.+-..+++..+ |.+-|..+|.
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~ 128 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEP 128 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 3456777899999999777777766544 5566665543
No 29
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=24.74 E-value=89 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=21.2
Q ss_pred CcchHHHHHHHhhcCCCeeeeeec---------CCCCCC
Q 033562 39 EHTIGNILRMQLHRDENVLFAGYK---------LPHPLQ 68 (116)
Q Consensus 39 DHTLgNlLr~~L~~~~~V~fAgY~---------ipHPl~ 68 (116)
+|-.-.---..|.+.++-+|.+|+ |+|+.+
T Consensus 108 ~~~~~~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~~ 146 (148)
T 3pbp_B 108 NHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAAE 146 (148)
T ss_dssp TSHHHHHHHHHHTSCSSSEEEEECTTTCCEEEEESCSCC
T ss_pred chHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeeeeee
Confidence 344444445567889999999997 778765
No 30
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=24.71 E-value=33 Score=23.88 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=5.8
Q ss_pred cceeEEEEec---CCcchHHHHHHH
Q 033562 28 INAASFTIER---EEHTIGNILRMQ 49 (116)
Q Consensus 28 ~n~~~~~i~~---EDHTLgNlLr~~ 49 (116)
.+.+++.+.| -|+|.+|++|..
T Consensus 189 S~~~~l~V~g~~~~~~t~~n~~~~~ 213 (218)
T 1uct_A 189 SNALELVVTDSIHQDYTTQNLILEH 213 (218)
T ss_dssp CCCEEEEEC----------------
T ss_pred CCcEEEEEecCCCcCCChhhhhhhh
Confidence 3566777765 699999999864
No 31
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=24.08 E-value=12 Score=27.99 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=52.7
Q ss_pred CCCcceeEEEEecCCcchHHHHHHHhhcCCCeeeeeecCCCCCCceeEEEEEeCCCCCHHHHHH
Q 033562 25 TKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYN 88 (116)
Q Consensus 25 ~k~~n~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~ipHPl~~~i~lrIqt~~~~~p~e~l~ 88 (116)
.| .+..++++..++=-+-+.+...|+..++--| .-.|. -.++.+.|..+...+..|.+.++
T Consensus 20 ~k-~~~~~~~l~ks~ik~~~~~e~~lL~~~~~~f-~~~I~-~~eD~~~i~y~~~~~~~~f~~i~ 80 (219)
T 4ano_A 20 IN-DQPYTVIFQRAKLKMQDPLELEVLKEVDPCI-VRDID-VSEDEVKVVIKPPSSFLTFAAIR 80 (219)
T ss_dssp EE-ETTEEEEEEGGGCCCCSGGGGGGGGGSCSSS-EEEEE-ECSSEEEEEEECCTTCEEHHHHH
T ss_pred ec-CCeEEEEEEHHHhccCCHHHHHHHhccCCCC-CeEEE-EeCCEEEEEEEcCcccCcHHHHH
Confidence 45 6789999999999999999999999998888 77776 68999999999987777877764
No 32
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=23.90 E-value=1.2e+02 Score=20.76 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=26.3
Q ss_pred CcceeEEEEecCCcchHHHHHHHhhcCCC--eeeeeecCC
Q 033562 27 IINAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLP 64 (116)
Q Consensus 27 ~~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~ip 64 (116)
.+..+..++.++.|++|-.+...+++.-+ |.+-|-.+|
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p 57 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT 57 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 34567778899999999777777777654 444454443
No 33
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.94 E-value=1.2e+02 Score=17.39 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033562 87 YNQAINDLDKELDTLKSAFEAELAKHS 113 (116)
Q Consensus 87 l~~a~~~l~~~~~~l~~~f~~a~~~~~ 113 (116)
+++-++.|...++.+...|.+-+.+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666553
No 34
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.82 E-value=1.5e+02 Score=21.37 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=30.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033562 73 VRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKH 112 (116)
Q Consensus 73 lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~ 112 (116)
.-+|.+|+.+ .+.|.++++.-.+.+.++.+.+++++++.
T Consensus 199 ~~lq~~g~~~-~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (240)
T 2wnr_B 199 TLLQSDGNLT-PEEFERALDLAVEGCLRIHEVQKEALRKR 237 (240)
T ss_dssp EEEEEEECBC-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEEcccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466666664 58888999998999999999888888764
No 35
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=22.55 E-value=1.5e+02 Score=18.86 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 72 IVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFE 106 (116)
Q Consensus 72 ~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~ 106 (116)
.|++.-.+. +...|+..|++.|...+.-.++++.
T Consensus 60 ~l~ae~~~~-d~yaAID~a~dkLerQLrK~K~k~~ 93 (101)
T 3v26_X 60 EIHASAEGQ-DMYAAIDGLIDKLARQLTKHKDKLK 93 (101)
T ss_dssp CEEEEECCS-SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555543 8889999999999988888877764
No 36
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=22.38 E-value=2.1e+02 Score=20.08 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=29.0
Q ss_pred eeeeecC-CCC---CCceeEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033562 57 LFAGYKL-PHP---LQYKIIVRIHTTS-QSSPMQAYNQAINDLDKELDTLKSAFEAELAKHS 113 (116)
Q Consensus 57 ~fAgY~i-pHP---l~~~i~lrIqt~~-~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~~ 113 (116)
..+||.+ |.| -.-.+....+++. |--|.-++..++.. .+-.+.+.+.+++++|+
T Consensus 172 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~---~~~~~~~~Lr~~~~~~~ 230 (231)
T 2r55_A 172 HPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSFFPR---SMTRFYANLQKAVKQFH 230 (231)
T ss_dssp CSEEEEEEECC--CCCEEEEEEECEECCSSCCHHHHHHHHHH---HHHHHHHHHHHHHHGGG
T ss_pred EeeEEEEEEeCCCCCcEEEEEEEEeCCCCCccHHHHHHHHhH---hHHHHHHHHHHHHHHhc
Confidence 3566665 443 2334555555553 33676666666442 33344555666666665
No 37
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=22.08 E-value=1.6e+02 Score=18.93 Aligned_cols=25 Identities=16% Similarity=-0.021 Sum_probs=16.2
Q ss_pred eEEEEEeCCCCCH--HHHHHHHHHHHH
Q 033562 71 IIVRIHTTSQSSP--MQAYNQAINDLD 95 (116)
Q Consensus 71 i~lrIqt~~~~~p--~e~l~~a~~~l~ 95 (116)
+.++|+|+.+.++ .+.|.+++.++.
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~al 27 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAI 27 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHH
Confidence 4688999877666 355555555444
No 38
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=21.82 E-value=2.1e+02 Score=20.75 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=29.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033562 73 VRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHS 113 (116)
Q Consensus 73 lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~~ 113 (116)
+-+|..+.. +.+.|.++++--.+.+.++.+.+++++++..
T Consensus 197 ~~i~~~g~~-~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 236 (246)
T 2wp8_B 197 SLLLVEDKI-PLDRLENVLAIGIAGAHRVRDLMDEELRKHA 236 (246)
T ss_dssp EEEEECSCE-EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346766665 5678888888888888888888888877653
No 39
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=21.70 E-value=67 Score=23.24 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred cceeEEEEecCCcchHHHHHHHhhcCCC--eeeeeecCC
Q 033562 28 INAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLP 64 (116)
Q Consensus 28 ~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~ip 64 (116)
+.-+..++.+|-|.+|-.+...+++..+ |.+-|=.+|
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 131 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVL 131 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCC
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCC
Confidence 4456678899999999988888888765 445555554
No 40
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=21.49 E-value=78 Score=20.09 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=15.9
Q ss_pred EEEeCCCCCHHHHHHHHHH
Q 033562 74 RIHTTSQSSPMQAYNQAIN 92 (116)
Q Consensus 74 rIqt~~~~~p~e~l~~a~~ 92 (116)
.|+..+|.+..+||.+|++
T Consensus 15 ~V~VrpG~tlrdaL~KaLk 33 (77)
T 1c1y_B 15 VVNVRNGMSLHDCLMKALK 33 (77)
T ss_dssp EEECCTTCBHHHHHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHH
Confidence 4666789999999999986
No 41
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.40 E-value=80 Score=20.26 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=29.5
Q ss_pred eeEEEEecCCcchHHHHHHHhhcCCCeeeeeecCCCC
Q 033562 30 AASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHP 66 (116)
Q Consensus 30 ~~~~~i~~EDHTLgNlLr~~L~~~~~V~fAgY~ipHP 66 (116)
...+.+.|++--+..++.+.-.+.=.|+..||...|-
T Consensus 66 ~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~~~~~~~ 102 (106)
T 3dhx_A 66 IMLTEMHGTQQDTQAAIAWLQEHHVKVEVLGYVLEHH 102 (106)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEEC--
T ss_pred EEEEEEeCCHHHHHHHHHHHHHCCCEEEEeeeeeecc
Confidence 4567788888888888888877788899999998873
No 42
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.37 E-value=95 Score=22.91 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=30.5
Q ss_pred CcceeEEEEecCCcchHHHHHHHhhcCCC--eeeeeecCCCC
Q 033562 27 IINAASFTIEREEHTIGNILRMQLHRDEN--VLFAGYKLPHP 66 (116)
Q Consensus 27 ~~n~~~~~i~~EDHTLgNlLr~~L~~~~~--V~fAgY~ipHP 66 (116)
.+.-+..+..++-|++|-.+-..+++.-+ |.+-|-.+|..
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e 164 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAE 164 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 34456778899999999888888888765 66788877543
No 43
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=21.08 E-value=1.6e+02 Score=21.45 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=26.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033562 74 RIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKH 112 (116)
Q Consensus 74 rIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~ 112 (116)
-+|.+++.+ .+.|.++++.-.+.+.++.+.+++++++.
T Consensus 200 ~~~~~g~~~-~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 237 (249)
T 2po1_A 200 LLQMDGYLT-KDEFIEAVKLAIKGAKAVYQKQREALKEK 237 (249)
T ss_dssp EECCEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555654 46777777777777777777777777654
No 44
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=20.79 E-value=1.4e+02 Score=22.93 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033562 80 QSSPMQAYNQAINDLDKELDTLKSAFE 106 (116)
Q Consensus 80 ~~~p~e~l~~a~~~l~~~~~~l~~~f~ 106 (116)
+++|.+||..|.......+..+++...
T Consensus 211 gIDpE~ALr~an~KF~~Rf~~~E~~~~ 237 (265)
T 3cra_A 211 GTKAEIALQKANEKFERRFREVERIVA 237 (265)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999887654
No 45
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=20.75 E-value=1.2e+02 Score=19.56 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=18.2
Q ss_pred ceeEEEEEeCCCC-CHH-HHHHHHHHHH
Q 033562 69 YKIIVRIHTTSQS-SPM-QAYNQAINDL 94 (116)
Q Consensus 69 ~~i~lrIqt~~~~-~p~-e~l~~a~~~l 94 (116)
-+..+.|..++|+ ||. +++++|+.+|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~L 43 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREE 43 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHc
Confidence 4456666667664 887 7888888765
No 46
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=20.72 E-value=3e+02 Score=21.47 Aligned_cols=55 Identities=7% Similarity=-0.151 Sum_probs=41.4
Q ss_pred cCCcc-----hHHHHHHHhh--cCCCeeeeeecCCCCCCceeEEEEEeCCCCCHHHHHHHHHH
Q 033562 37 REEHT-----IGNILRMQLH--RDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAIN 92 (116)
Q Consensus 37 ~EDHT-----LgNlLr~~L~--~~~~V~fAgY~ipHPl~~~i~lrIqt~~~~~p~e~l~~a~~ 92 (116)
+..|| +.+-++..|- ..-.|.|...++|=+--.-.-+.++++..+++ +.++++++
T Consensus 235 ~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~-eei~~~l~ 296 (367)
T 1t4b_A 235 DNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSI-PTVEELLA 296 (367)
T ss_dssp TTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCH-HHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCH-HHHHHHHH
Confidence 44566 8889998875 34479999999999999999999999877664 44444443
No 47
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=20.66 E-value=1.9e+02 Score=21.01 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=31.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033562 73 VRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHS 113 (116)
Q Consensus 73 lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~~ 113 (116)
+-+|..++.+ .+.|.++++--.+.+.++.+.+++++++..
T Consensus 203 ~~v~~~g~~~-~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 242 (250)
T 2je6_B 203 TLFQLNGSMT-PDEFRQAFDLAVKGINIIYNLEREALKSKY 242 (250)
T ss_dssp EEEEEEECBC-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEEEEcccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366666664 578889999988999999888888888764
No 48
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=20.52 E-value=1.3e+02 Score=21.99 Aligned_cols=41 Identities=5% Similarity=0.164 Sum_probs=26.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033562 72 IVRIHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKHS 113 (116)
Q Consensus 72 ~lrIqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~~ 113 (116)
.+-+|.++..+ .+.|.++++.-.+.+.++.+.+++++++..
T Consensus 200 i~~lq~~g~~~-~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~ 240 (249)
T 2nn6_B 200 IALLEMDARLH-EDHLERVLEAAAQAARDVHTLLDRVVRQHV 240 (249)
T ss_dssp EEEEEECSCCB-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477777664 366677777777777777777777666553
No 49
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=20.14 E-value=1.9e+02 Score=20.81 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=29.6
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033562 75 IHTTSQSSPMQAYNQAINDLDKELDTLKSAFEAELAKH 112 (116)
Q Consensus 75 Iqt~~~~~p~e~l~~a~~~l~~~~~~l~~~f~~a~~~~ 112 (116)
+|..++.+ .+.|.++++.-.+.+.++.+.+++++++.
T Consensus 197 lq~~g~~~-~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 197 SSTKGLYS-DTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp EEEEESCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556665 48889999999999999999999888865
Done!