BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033564
MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANL
EGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRDTLLCN

High Scoring Gene Products

Symbol, full name Information P value
AT2G44920 protein from Arabidopsis thaliana 7.1e-29
AT1G12250 protein from Arabidopsis thaliana 6.4e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033564
        (116 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2055023 - symbol:AT2G44920 "AT2G44920" species...   321  7.1e-29   1
TAIR|locus:2202033 - symbol:AT1G12250 "AT1G12250" species...   119  6.4e-07   1


>TAIR|locus:2055023 [details] [associations]
            symbol:AT2G44920 "AT2G44920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid
            lumen" evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006636
            "unsaturated fatty acid biosynthetic process" evidence=RCA]
            [GO:0009409 "response to cold" evidence=RCA] [GO:0015979
            "photosynthesis" evidence=RCA] [GO:0015995 "chlorophyll
            biosynthetic process" evidence=RCA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0043085 "positive regulation of catalytic
            activity" evidence=RCA] Pfam:PF00805 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC002388 GO:GO:0009535 GO:GO:0009543
            eggNOG:COG1357 InterPro:IPR001646 EMBL:AY050941 EMBL:BT000902
            IPI:IPI00534350 IPI:IPI00535173 PIR:T00401 RefSeq:NP_566030.1
            RefSeq:NP_566031.1 UniGene:At.12323 PDB:3N90 PDBsum:3N90
            ProteinModelPortal:O22160 SMR:O22160 IntAct:O22160 STRING:O22160
            PaxDb:O22160 PRIDE:O22160 ProMEX:O22160 EnsemblPlants:AT2G44920.2
            GeneID:819101 KEGG:ath:AT2G44920 TAIR:At2g44920
            HOGENOM:HOG000232693 InParanoid:O22160 OMA:FLKYFLC PhylomeDB:O22160
            ProtClustDB:CLSN2688933 Genevestigator:O22160 GermOnline:AT2G44920
            Uniprot:O22160
        Length = 224

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 61/68 (89%), Positives = 63/68 (92%)

Query:    49 NVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNA 108
             NVTK NL+NANLEGA  TGNTSF+GSNITGADFTDVPLRDDQR YLCKVADGVN TTGNA
Sbjct:   157 NVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNA 216

Query:   109 TRDTLLCN 116
             TRDTLLCN
Sbjct:   217 TRDTLLCN 224


>TAIR|locus:2202033 [details] [associations]
            symbol:AT1G12250 "AT1G12250" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009535 GO:GO:0009543 EMBL:AC022522
            eggNOG:COG1357 EMBL:AY142640 EMBL:AY035122 IPI:IPI00519055
            PIR:F86257 RefSeq:NP_563902.1 UniGene:At.19174
            ProteinModelPortal:Q8H1Q1 SMR:Q8H1Q1 IntAct:Q8H1Q1 STRING:Q8H1Q1
            PaxDb:Q8H1Q1 PRIDE:Q8H1Q1 ProMEX:Q8H1Q1 EnsemblPlants:AT1G12250.1
            GeneID:837778 KEGG:ath:AT1G12250 TAIR:At1g12250
            HOGENOM:HOG000239303 InParanoid:Q8H1Q1 OMA:GAYLEKA PhylomeDB:Q8H1Q1
            ProtClustDB:CLSN2687778 Genevestigator:Q8H1Q1 Uniprot:Q8H1Q1
        Length = 280

 Score = 119 (46.9 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query:    50 VTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNAT 109
             + +ANL+NA L  ++ T  +   G+ I GADF+D  +   Q++ LCK A G NP TG  T
Sbjct:   176 LNEANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDT 234

Query:   110 RDTLLC 115
             R +L C
Sbjct:   235 RKSLGC 240


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116        97   0.00091  102 3  11 22  0.38    30
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  110 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.56u 0.12s 8.68t   Elapsed:  00:00:00
  Total cpu time:  8.56u 0.12s 8.68t   Elapsed:  00:00:00
  Start:  Thu May  9 19:04:06 2013   End:  Thu May  9 19:04:06 2013

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