BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033564
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis
thaliana GN=At2g44920 PE=1 SV=2
Length = 224
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/87 (88%), Positives = 81/87 (93%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
L+GADLS+ADLR ADFSLANVTK NL+NANLEGA TGNTSF+GSNITGADFTDVPLRDD
Sbjct: 138 LTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDD 197
Query: 90 QREYLCKVADGVNPTTGNATRDTLLCN 116
QR YLCKVADGVN TTGNATRDTLLCN
Sbjct: 198 QRVYLCKVADGVNATTGNATRDTLLCN 224
>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis
thaliana GN=At1g12250 PE=1 SV=1
Length = 280
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
SGADLSD + D + N +ANL+NA L ++ T + G+ I GADF+D +
Sbjct: 161 FSGADLSDTLM---DRMVLN--EANLTNAVLVRSVLT-RSDLGGAKIEGADFSDAVIDLL 214
Query: 90 QREYLCKVADGVNPTTGNATRDTLLC 115
Q++ LCK A G NP TG TR +L C
Sbjct: 215 QKQALCKYATGTNPLTGVDTRKSLGC 240
>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2
PE=1 SV=1
Length = 298
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 24 CLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
CL+ GADL A L++AD + AN+ ANL ANL+GA N +F+G+N+ A
Sbjct: 217 CLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANLKGA-KLSNANFKGANLQRAYLRH 275
Query: 84 VPLRDDQRE 92
V LR+ E
Sbjct: 276 VNLREAHME 284
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGA 79
L GA+L A L +A+F AN+ +A L + NL A G + G+N+TGA
Sbjct: 248 LEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHMEG-ANLGGANMTGA 296
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 11 PVAAKWGNISYIHCLLL-------FPLSGADLSDADLRSADFSLANVTKANLSNANLEGA 63
V A+ I I C+ LSG DLS DL DFS A + S NL+ A
Sbjct: 112 EVEAELTRIDIIKCIQTERVRFRGVNLSGIDLSKLDLSLVDFSYACLRNVFFSRTNLQCA 171
Query: 64 LATGNTSFRGSNITGADFTDVPLRD 88
FR ++ G+ F + LR+
Sbjct: 172 ------KFRNADAEGSIFHNAILRE 190
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALAT----GNTSFRGSNITGADFTDVP 85
L GA LSDA+L AD S AN++ ANLS ANL A T +N++GAD T+
Sbjct: 79 LKGAYLSDANLSDADLSDANLSDANLSGANLAHANLTMAYLSEADLSNANLSGADLTNAN 138
Query: 86 LR 87
L
Sbjct: 139 LN 140
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 8 TQLP-VAAKWGNISYIHCLLLF----PLSGADLSDADLRSADFSLANVTKANLSNANLEG 62
T LP V N+++ + + + LS A+LS+ADL+ AD S AN++ A+L+NANL
Sbjct: 142 TDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQ 201
Query: 63 ALATGNTSFRGSNITGADFT 82
N + G+N+ A+ T
Sbjct: 202 T-DLPNVNLSGANLAHANLT 220
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 14/85 (16%)
Query: 8 TQLP-VAAKWGNISYIHCLLLF----PLSGADLSDADLRSADFSLANVTKANLSN----- 57
T LP V N+++ + + + LS A+LS+ADL+ AD S AN++ ANL+N
Sbjct: 202 TDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSDANLSDANLTNVDLKR 261
Query: 58 ANLEGALATG----NTSFRGSNITG 78
A+L A+ G + + G+N+TG
Sbjct: 262 ADLSNAILKGANLLHINVEGTNMTG 286
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
LSGA+L+ A+L A S A+++ ANLSNA+L+ A +N++GAD T+ L
Sbjct: 149 LSGANLAHANLTMAYLSEADLSNANLSNADLKRA------DLSNANLSGADLTNANLN 200
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGA-LATGNTS---FRGSNITGAD 80
L + LS ADLS+A+L AD + AN+ + +L N NL GA LA N + ++++ A+
Sbjct: 114 LTMAYLSEADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNAN 173
Query: 81 FTDVPLR 87
++ L+
Sbjct: 174 LSNADLK 180
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 30 LSGADLSDADLRSADF-----SLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDV 84
LSGADL++A+L D S AN+ ANL+ A L A N + +++ AD +D
Sbjct: 189 LSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEA-DLSNANLSNADLKRADLSDA 247
Query: 85 PLRD 88
L D
Sbjct: 248 NLSD 251
>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1819 PE=4 SV=1
Length = 331
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
LS ADLS A+L+ A+ ++ KA+LS ANL+GAL T + + G+ + GAD + L
Sbjct: 168 LSRADLSYANLKEANLRDVDLRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG----NTSFRGSNITGADFTDV 84
L A+L D DLR AD S AN+ A L++ANL GA G N + + I+ A+ T V
Sbjct: 178 LKEANLRDVDLRKADLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKISEAEMTAV 236
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANL-EGALATGNTS-------------FRGSN 75
L+G++LS + SAD S AN+TKANL A L E A N + +N
Sbjct: 253 LTGSNLSFTRMNSADLSRANLTKANLQEAELIEAFFARANLTEANFINANLVRADLMSAN 312
Query: 76 ITGADFTDVPLRDDQREY 93
+ GADF + D Q +
Sbjct: 313 MVGADFQGATMPDGQVRH 330
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGAD--FTDVPLR 87
LSGA L+ ADL++A+ A +++A ++ N +GA+ T + + +N+TG++ FT +
Sbjct: 208 LSGAKLNGADLQNANLMRAKISEAEMTAVNCQGAIMT-HVNLNRTNLTGSNLSFTRMNSA 266
Query: 88 DDQREYLCK 96
D R L K
Sbjct: 267 DLSRANLTK 275
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 21/73 (28%)
Query: 30 LSGADLSDADLRSADFSLAN---------------VTKANLSNANLEGALATGNTSFRGS 74
LSGA L+ ADL AD AN +T A L + NL GA RG+
Sbjct: 67 LSGASLNQADLAGADLRSANFHGAMLQGAILRDSDMTLATLQDTNLIGA------DLRGA 120
Query: 75 NITGADFTDVPLR 87
+++GA T LR
Sbjct: 121 DLSGATLTGACLR 133
>sp|P73063|Y1851_SYNY3 Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1851 PE=4 SV=1
Length = 162
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG---------NTSFRGSNITGAD 80
L GADL++ADL A A++ KANLS A+L GA G NT F +++TGA
Sbjct: 90 LVGADLTNADLSGAKLGGADLRKANLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAY 149
Query: 81 FTD 83
+D
Sbjct: 150 ISD 152
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 24 CLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALAT---------GNTSFRGS 74
CL L GA L DL A+ + A + A L NANL A T N G+
Sbjct: 29 CLSNASLIGAQLIFVDLGGANLTRAQLDSATLKNANLALANMTEVCLIYADLSNADLSGA 88
Query: 75 NITGADFTDVPL 86
N+ GAD T+ L
Sbjct: 89 NLVGADLTNADL 100
>sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9
PE=2 SV=1
Length = 389
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANL 60
SGADLS DLR +F +AN+++ NL++ANL
Sbjct: 225 FSGADLSRLDLRYINFKMANLSRCNLAHANL 255
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG--------------NTSFRGSN 75
L G D+ + + + +A + A L N NL GA G + RGSN
Sbjct: 310 LKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSN 369
Query: 76 ITGADFTDV--PLRDDQ 90
+ GA F ++ PL Q
Sbjct: 370 VKGAIFEEMLTPLHMSQ 386
>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0516 PE=4 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANL-EGALATGNTSFRGSNITGADFTDVPLRD 88
LSGA+LS +LR A AN+T ANLS +L E AL N + G++++GA+ LRD
Sbjct: 65 LSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLA--GADLSGANLERSFLRD 122
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLE----------GALATGNTSFRGSNITGA 79
L+GA+LS+ DL A + AN+ A+LS ANLE GA G + +N+T A
Sbjct: 85 LTGANLSETDLTEAALTEANLAGADLSGANLERSFLRDVDLTGANLKG-ANLAWANLTAA 143
Query: 80 DFTDVPLRDDQ 90
+ TDV L + +
Sbjct: 144 NLTDVDLEEAE 154
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
L+GADL + +L +A + ++++ ANLS NL AL + G+N++ D T+ L
Sbjct: 45 LAGADLREFNLENARLNRSDLSGANLSGVNLRRAL-LDRANLTGANLSETDLTEAAL 100
>sp|P74221|Y1152_SYNY3 Uncharacterized protein slr1152 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1152 PE=4 SV=1
Length = 331
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 23 HCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82
HC ++ ADL+ A L AD S A++TKA+L GA A T+F+G+ ++GA
Sbjct: 89 HC----QMNWADLTYAKLNQADLSHADLTKASLY-----GAFAV-KTNFKGAKLSGATLA 138
Query: 83 DVPLR 87
LR
Sbjct: 139 HANLR 143
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
LSGA L+ A+LR A+ N+T ANL ANL R +N ADF+ L++
Sbjct: 131 KLSGATLAHANLRGANLEQTNLTGANLFAANL-----------REANFQKADFSWANLQE 179
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 16 WGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGA-LATGN---TSF 71
W +++Y L+ ADLS ADL A A K N A L GA LA N +
Sbjct: 94 WADLTYA------KLNQADLSHADLTKASLYGAFAVKTNFKGAKLSGATLAHANLRGANL 147
Query: 72 RGSNITGADFTDVPLRD 88
+N+TGA+ LR+
Sbjct: 148 EQTNLTGANLFAANLRE 164
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 16 WGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATG-------- 67
W N+ CL L L A L DLR A +++ +L ++GA TG
Sbjct: 174 WANLQEA-CLSLANLRDARLWATDLRRAFMKEMDLSALSLHGLAMDGAKLTGSCLRDTNL 232
Query: 68 -NTSFRGSNITGADFTDVPL 86
++S RG+N+ GAD T L
Sbjct: 233 SHSSLRGANLRGADLTGANL 252
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
L+G+ L D +L + AN+ A+L+ ANL G G+++ GA+ T V D
Sbjct: 221 KLTGSCLRDTNLSHSSLRGANLRGADLTGANLTG------VDLTGADLMGANLTQVVWHD 274
Query: 89 DQREYLCKVADGVN 102
V +GVN
Sbjct: 275 -------AVVEGVN 281
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 24 CLLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGA 63
CL LS + L A+LR AD + AN+T +L+ A+L GA
Sbjct: 226 CLRDTNLSHSSLRGANLRGADLTGANLTGVDLTGADLMGA 265
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 30 LSGADLSDA-----DLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDV 84
GA+LSDA DLR AD AN+ N ANL+GA N +GAD
Sbjct: 501 FKGANLSDAYFGYADLRGADLRGANLNGVNFKYANLQGA-----------NFSGADLGSA 549
Query: 85 PLRDDQ 90
+ +Q
Sbjct: 550 KVSPEQ 555
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLR 87
+ G + A+L +A+F A +T+A+ A L+ N F+G+N++ A F LR
Sbjct: 466 VPGINCYQANLTNANFEQAELTRADFGKARLK------NVIFKGANLSDAYFGYADLR 517
>sp|Q5PEX4|PIPB2_SALPA Secreted effector protein pipB2 OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=pipB2 PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALA----TGNTSFRGSNITGAD 80
++L G +L A L A+ + N+ A+LS ANLEGA+ +F+G+N++G
Sbjct: 144 VILTAQGGMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTS 203
Query: 81 FTDVPLRDDQRE--YLCKVA-DGVNPTTGNATRDTLL 114
D ++ E +C D N T N +LL
Sbjct: 204 LGDSNFKNACLEDGIMCGATLDHANLTGANLQHASLL 240
>sp|Q57KZ6|PIPB2_SALCH Secreted effector protein pipB2 OS=Salmonella choleraesuis (strain
SC-B67) GN=pipB2 PE=3 SV=1
Length = 350
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALA----TGNTSFRGSNITGAD 80
++L G +L A L A+ + N+ A+LS ANLEGA+ +F+G+N++G
Sbjct: 144 VILTAQGGMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTS 203
Query: 81 FTDVPLRDDQRE--YLCKVA-DGVNPTTGNATRDTLL 114
D ++ E +C D N T N +LL
Sbjct: 204 LGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLL 240
>sp|Q9JX45|LPXB_NEIMA Lipid-A-disaccharide synthase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=lpxB PE=3 SV=1
Length = 384
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 79 ADFTDVPLR--DDQREYLCKVADGVNPTTGNATRDTLLC 115
++F +PL D Q E +C+ AD V T+G AT + LC
Sbjct: 248 SEFAGLPLTVTDRQSETVCRAADAVLVTSGTATLEVALC 286
>sp|P37497|YYBG_BACSU Uncharacterized protein YybG OS=Bacillus subtilis (strain 168)
GN=yybG PE=4 SV=1
Length = 279
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
L ADL +ADLR DF A++ A+LS A+L G++ +N G T +PL
Sbjct: 216 LIAADLRNADLRMTDFIGADMRDADLSGADLTGSIFLTQAQVNAAN--GDSNTKLPL 270
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 1 MRVVAYITQLPVAAKWGNISYIHCLLLFPLSGADLSDADLRSADFSLANVTKANLSNANL 60
+R A +LP G++ L GA L DLR A+ A + A+L NA+L
Sbjct: 177 VRAQARHPKLPKKVSRGSV----------LIGAKLKGLDLRGANLRGALLIAADLRNADL 226
Query: 61 EGALATGNTSFRGSNITGADFT 82
G R ++++GAD T
Sbjct: 227 RMTDFIG-ADMRDADLSGADLT 247
>sp|Q8ZMM8|PIPB2_SALTY Secreted effector protein pipB2 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB2 PE=1 SV=1
Length = 350
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALA----TGNTSFRGSNITGAD 80
++L G +L A L A+ + N+ A+LS ANLEGA+ +F+G+N++G
Sbjct: 144 VILTAQGGMNLKGAVLTGANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTS 203
Query: 81 FTDVPLRDDQRE--YLCKVA-DGVNPTTGNATRDTLL 114
D ++ E +C D N T N +LL
Sbjct: 204 LGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLL 240
>sp|A1KRN0|LPXB_NEIMF Lipid-A-disaccharide synthase OS=Neisseria meningitidis serogroup C
/ serotype 2a (strain ATCC 700532 / FAM18) GN=lpxB PE=3
SV=1
Length = 384
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 80 DFTDVPLR--DDQREYLCKVADGVNPTTGNATRDTLLC 115
+F +PL D Q E +C+ AD V T+G AT + LC
Sbjct: 249 EFAGLPLTVIDRQSETVCRAADAVLVTSGTATLEVALC 286
>sp|Q9K1F5|LPXB_NEIMB Lipid-A-disaccharide synthase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=lpxB PE=3 SV=2
Length = 384
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 80 DFTDVPLR--DDQREYLCKVADGVNPTTGNATRDTLLC 115
+F +PL D Q E +C+ AD V T+G AT + LC
Sbjct: 249 EFAGLPLTVIDRQSETVCRAADAVLVTSGTATLEVALC 286
>sp|Q80UN1|KCTD9_MOUSE BTB/POZ domain-containing protein KCTD9 OS=Mus musculus GN=Kctd9
PE=2 SV=1
Length = 339
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 16/77 (20%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG--------------NTSFRGSN 75
L G D+ + + + +A + A L N NL GA G + RGSN
Sbjct: 260 LKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSN 319
Query: 76 ITGADFTDV--PLRDDQ 90
+ GA F ++ PL Q
Sbjct: 320 VKGAIFEEMLTPLHMSQ 336
>sp|Q8ZQ59|PIPB_SALTY Secreted effector protein PipB OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB PE=2 SV=1
Length = 291
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
L GA+L A+L + + +N+TKANL++A+L A +G + + + G+D TD L
Sbjct: 191 LVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSG-VNLTAAILFGSDLTDTKL 246
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89
LS D S+AD R S N+ ANL ANL + GSN+T A+ T L
Sbjct: 171 LSKIDASNADFRETTLSNVNLVGANLCCANLHAV------NLMGSNMTKANLTHADLT-- 222
Query: 90 QREYLCKVADGVNPT 104
C GVN T
Sbjct: 223 -----CANMSGVNLT 232
>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase
At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1
Length = 960
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGAL-----ATGNTSFRGSNITGADFT 82
LSG ++S L +A F L + NLSN NL G + T + S R N++ +F+
Sbjct: 79 LSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFS 136
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 50 VTKANLSNANLEGALATG-NTSFRGSNITGADFTDVPLRDDQREY 93
V++ N +N +L N RG I G D+TD+PL D R++
Sbjct: 137 VSRTNPNNGEFRFSLEIHVNHENRGFEIHGEDYTDIPLSDSNRDH 181
>sp|Q5F5Y6|LPXB_NEIG1 Lipid-A-disaccharide synthase OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=lpxB PE=3 SV=1
Length = 390
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 88 DDQREYLCKVADGVNPTTGNATRDTLLC 115
D Q E +C+ AD V T+G AT + LC
Sbjct: 265 DRQSETVCRAADAVLVTSGTATLEVALC 292
>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1
OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
Length = 1249
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 38 ADLRSADFSLANVTKANLSNANLEGAL--ATGNTSFRGSNITGADFTD-VPLRDDQREYL 94
+L + SL N+T+ NLS+ L G + G++S+ ++T F D +PL + L
Sbjct: 542 GNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNL 601
Query: 95 CKVADGVNPTTG 106
++ G N TG
Sbjct: 602 DRLRLGKNQLTG 613
>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At5g53490 PE=1 SV=2
Length = 236
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRD 88
+S A +A + +F+ A + + N +NL+GA+ NT GS A+ DV D
Sbjct: 151 MSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFR-NTVLSGSTFEEANLEDVVFED 208
>sp|Q8Z4G9|PIPB2_SALTI Secreted effector protein pipB2 OS=Salmonella typhi GN=pipB2 PE=3
SV=1
Length = 350
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 33 ADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
AD A+ + A+ S A++ +NL+NA LE ++ G T R +N+TGA+ L
Sbjct: 187 ADCDGANFKGANLSGASLGDSNLTNACLEDSIMCGATLDR-ANLTGANLQHTSL 239
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPL 86
L+GA+L+ +L AD S A++ A L A+ +GA +F+G+N++GA D L
Sbjct: 159 LTGANLTAENLCDADLSGADLEGAILFMADCDGA------NFKGANLSGASLGDSNL 209
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83
L ADLS ADL A +A+ AN ANL GA S SN+T A D
Sbjct: 169 LCDADLSGADLEGAILFMADCDGANFKGANLSGA------SLGDSNLTNACLED 216
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDV 84
L+ +SGA L A + +A A +T+ANL A SF +N+ GAD ++
Sbjct: 264 LIRADMSGATLKGATIMAAIMEGAVLTRANLQKA-----------SFTATNLDGADLSEA 312
Query: 85 PLRD 88
LR+
Sbjct: 313 NLRN 316
>sp|Q6EN45|P2C13_ORYSJ Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica
GN=Os02g0255100 PE=2 SV=1
Length = 363
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 61 EGALATGNTSFRGSNITGADFTDVPLR--DDQREYLCKVADG 100
+G L G +SFRG T DF DV L D Q L V DG
Sbjct: 107 DGKLKCGYSSFRGKRATMEDFYDVKLTEIDGQAVSLFGVFDG 148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,370,341
Number of Sequences: 539616
Number of extensions: 1547084
Number of successful extensions: 3354
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3112
Number of HSP's gapped (non-prelim): 142
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)