Query 033564
Match_columns 116
No_of_seqs 127 out of 1380
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15197 secreted effector pro 99.6 1.9E-15 4E-20 113.6 3.5 17 97-113 261-277 (291)
2 KOG1665 AFH1-interacting prote 99.4 2.3E-13 5E-18 98.7 2.6 61 45-108 228-288 (302)
3 PF13599 Pentapeptide_4: Penta 99.3 1E-12 2.2E-17 80.0 2.6 6 19-24 6-11 (78)
4 PF13599 Pentapeptide_4: Penta 99.3 7.3E-13 1.6E-17 80.6 1.7 63 29-92 2-65 (78)
5 PRK09718 hypothetical protein; 99.2 2.9E-12 6.2E-17 101.3 1.9 10 102-111 196-205 (512)
6 KOG1665 AFH1-interacting prote 99.2 9.9E-12 2.1E-16 90.3 3.8 96 10-106 197-300 (302)
7 TIGR01299 synapt_SV2 synaptic 45.5 11 0.00025 32.2 1.3 47 34-81 515-561 (742)
8 TIGR01299 synapt_SV2 synaptic 40.5 10 0.00022 32.5 0.3 47 27-74 518-564 (742)
9 PTZ00395 Sec24-related protein 27.9 1.1E+02 0.0023 28.8 4.4 46 43-89 437-482 (1560)
10 PRK09716 hypothetical protein; 19.3 43 0.00094 25.2 0.4 51 28-79 151-201 (395)
No 1
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.56 E-value=1.9e-15 Score=113.59 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=10.5
Q ss_pred hccCCCCcccccccccc
Q 033564 97 VADGVNPTTGNATRDTL 113 (116)
Q Consensus 97 ~~~g~~~~~~~~~~~~l 113 (116)
.+.|+++.++++|+..|
T Consensus 261 ~L~gad~~ga~~tp~~~ 277 (291)
T PRK15197 261 ALTGADLTGSQHTPTPL 277 (291)
T ss_pred CCCCCcccCCccCCCCC
Confidence 45566777776665543
No 2
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.37 E-value=2.3e-13 Score=98.70 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=27.7
Q ss_pred cCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCccccc
Q 033564 45 FSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNA 108 (116)
Q Consensus 45 f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~~~~ 108 (116)
|.++++++++++.|+|+++++.+ +++++++|.|+++++++|+++++++. ++-|+|+-.+.+
T Consensus 228 ~egs~m~ginLrvA~Lknanle~-~NLrgA~LaGadLencnlsG~dLQeA--nLRg~Nlk~A~~ 288 (302)
T KOG1665|consen 228 MEGSQMTGINLRVATLKNANLEN-CNLRGANLAGADLENCNLSGADLQEA--NLRGVNLKEAHM 288 (302)
T ss_pred ccccccccceeEecccccccccc-CccccccccCCccccCCCCCcchhHh--hcccCchhhHHH
Confidence 33333333333344444444444 45555555555555555555555432 344444444443
No 3
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.31 E-value=1e-12 Score=79.96 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=2.2
Q ss_pred cchhcc
Q 033564 19 ISYIHC 24 (116)
Q Consensus 19 ~~f~~c 24 (116)
+.|.+|
T Consensus 6 ~~f~~~ 11 (78)
T PF13599_consen 6 CSFSGC 11 (78)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 333333
No 4
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.30 E-value=7.3e-13 Score=80.63 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=31.4
Q ss_pred cccCCcccCccccCcccCCceecCceeccCcc-cCCcccCceeccCCeecCCccCCCcCChhhHH
Q 033564 29 PLSGADLSDADLRSADFSLANVTKANLSNANL-EGALATGNTSFRGSNITGADFTDVPLRDDQRE 92 (116)
Q Consensus 29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l-~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~ 92 (116)
+|.+++|++++|.++.|.++.+.++.|.+++| .++.|.+ +.+.++.|.+++|.++.+.+++++
T Consensus 2 ~~~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~-~~l~~~~f~~~~l~~~~f~~~~l~ 65 (78)
T PF13599_consen 2 DFENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSN-CQLDNSDFSNCDLKRASFSNCDLD 65 (78)
T ss_dssp EEESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETT-EBETTEBETTSBETTEEETTEB-T
T ss_pred EEEEEEEECCCCCCCEeECCEEECcEEECCccccCCeEEC-CCCCCCEEEeCEEeCCEEecCCcc
Confidence 44455555555555555555555555555554 5555555 555555555444444444444444
No 5
>PRK09718 hypothetical protein; Validated
Probab=99.23 E-value=2.9e-12 Score=101.30 Aligned_cols=10 Identities=20% Similarity=0.042 Sum_probs=3.6
Q ss_pred CCcccccccc
Q 033564 102 NPTTGNATRD 111 (116)
Q Consensus 102 ~~~~~~~~~~ 111 (116)
++..+.++++
T Consensus 196 DLseAdFSEc 205 (512)
T PRK09718 196 YLYASHFTRA 205 (512)
T ss_pred cCCcCCccCC
Confidence 3333333333
No 6
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.21 E-value=9.9e-12 Score=90.28 Aligned_cols=96 Identities=23% Similarity=0.323 Sum_probs=48.7
Q ss_pred cccccccCCcchhcc------ccCCcccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCC
Q 033564 10 LPVAAKWGNISYIHC------LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTD 83 (116)
Q Consensus 10 ~~~~~~~~~~~f~~c------~~~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~ 83 (116)
....+.+....|++. +.+++|+||+|.++++.++++.-++++++++.+|+|.+|.+.+ ++++.|+|+|+|+..
T Consensus 197 N~eGA~L~gcNfedps~~kaNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaG-adLencnlsG~dLQe 275 (302)
T KOG1665|consen 197 NAEGASLKGCNFEDPSGLKANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAG-ADLENCNLSGADLQE 275 (302)
T ss_pred ccccccccCcCCCCccchhccccccccccccccccccccceeEeccccccccccCccccccccC-CccccCCCCCcchhH
Confidence 334444555555542 4455566666666665555555555555555555555555555 555555554444444
Q ss_pred CcCChhhHHHHh--hhccCCCCccc
Q 033564 84 VPLRDDQREYLC--KVADGVNPTTG 106 (116)
Q Consensus 84 a~l~~~~l~~~~--~~~~g~~~~~~ 106 (116)
|++++++++..- +.+.+..+.++
T Consensus 276 AnLRg~Nlk~A~~e~mltplhMsqa 300 (302)
T KOG1665|consen 276 ANLRGVNLKEAHMEAMLTPLHMSQA 300 (302)
T ss_pred hhcccCchhhHHHHhhccchhhccc
Confidence 444444444322 33455555443
No 7
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=45.51 E-value=11 Score=32.21 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=21.7
Q ss_pred cccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCcc
Q 033564 34 DLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADF 81 (116)
Q Consensus 34 ~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~ 81 (116)
.|.+..++...|+++-|+.|.|.+..-.++.|.. |++....+.+.++
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-c~~~~~~~~~~~~ 561 (742)
T TIGR01299 515 KFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKN-CTFIDTLFENTDF 561 (742)
T ss_pred hhhcccccccccccccccccceeeccccchhhhc-cchhhhhccccch
Confidence 3334444444444444555555554444444444 4444444444443
No 8
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=40.48 E-value=10 Score=32.50 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=22.3
Q ss_pred CCcccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCC
Q 033564 27 LFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGS 74 (116)
Q Consensus 27 ~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~ 74 (116)
+..++...|+++-|..|.|.+..-.+.-|+.|++.+..|.+ +++...
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~-~~~~~~ 564 (742)
T TIGR01299 518 GLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN-TDFEEY 564 (742)
T ss_pred cccccccccccccccccceeeccccchhhhccchhhhhccc-cchhhh
Confidence 33444444455555555555554444445555555544444 444333
No 9
>PTZ00395 Sec24-related protein; Provisional
Probab=27.92 E-value=1.1e+02 Score=28.78 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=21.3
Q ss_pred cccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChh
Q 033564 43 ADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDD 89 (116)
Q Consensus 43 ~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~ 89 (116)
+-|..+-+.++-++++-+.++-|.+ +-+..+.++++..+.|.-+.+
T Consensus 437 ~~~~n~p~~n~p~~n~p~~n~p~~n-~p~~n~~~~n~~~~~~~~~~~ 482 (1560)
T PTZ00395 437 PPNSNTPYSNPPNSNPPYSNLPYSN-TPYSNAPLSNAPPSSAKDHHS 482 (1560)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCcCCCCCcccCCCccc
Confidence 3333333333334444444444444 555555555555555544443
No 10
>PRK09716 hypothetical protein; Provisional
Probab=19.32 E-value=43 Score=25.21 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=0.0
Q ss_pred CcccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCC
Q 033564 28 FPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGA 79 (116)
Q Consensus 28 ~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a 79 (116)
++++..++++.++..-+|.+-.+.++.+.--++..++|++ +++-..+|-.+
T Consensus 151 vdlssldlrni~l~~ydftdkhman~ilnpfkl~~t~ftn-anmfqvnfvss 201 (395)
T PRK09716 151 VDLSSLDLRNVDLDYYDFTDKHMANTILNPFKLNSTNFTN-ANMFQVNFVSS 201 (395)
T ss_pred eecccccccccceeecccchHhHHhhccCceecCCCCCcc-cceEEEEEEec
Done!