Query 033564
Match_columns 116
No_of_seqs 127 out of 1380
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n90_A P15, thylakoid lumenal 99.8 5.3E-21 1.8E-25 130.2 7.4 88 27-115 55-143 (152)
2 2f3l_A RFR-domain; beta helix, 99.8 2.8E-21 9.6E-26 135.7 5.9 84 32-116 101-184 (184)
3 3n90_A P15, thylakoid lumenal 99.7 5.2E-17 1.8E-21 110.4 4.7 84 29-113 27-114 (152)
4 2f3l_A RFR-domain; beta helix, 99.6 4.6E-17 1.6E-21 114.1 2.5 39 29-67 68-106 (184)
5 3pss_A QNR; pentapeptide repea 99.5 2.9E-15 9.9E-20 105.8 4.5 9 16-24 63-71 (216)
6 2qyu_A Secreted effector prote 99.4 2E-14 6.9E-19 115.4 2.7 53 29-82 67-119 (627)
7 2qyu_A Secreted effector prote 99.4 1E-13 3.6E-18 111.3 3.2 67 25-92 68-136 (627)
8 1m8n_A Antifreeze protein isof 7.9 69 0.0024 20.1 -0.4 53 37-90 40-92 (121)
9 1l0s_A Thermal hysteresis prot 4.8 2.1E+02 0.0071 16.9 0.5 49 30-78 22-71 (90)
10 2ee7_A Sperm flagellar protein 3.8 3.8E+02 0.013 16.8 1.2 21 85-105 11-31 (127)
No 1
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.84 E-value=5.3e-21 Score=130.23 Aligned_cols=88 Identities=83% Similarity=1.156 Sum_probs=68.6
Q ss_pred CCcccCCcccCccccCcccCCceecCceeccCcccCCccc-CceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCcc
Q 033564 27 LFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALAT-GNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTT 105 (116)
Q Consensus 27 ~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~-~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~ 105 (116)
+++|++++|++++|++++|.+|+|++++|.+|+|.++.|. + ++|.+++|++++|++++|++++++++|++.+|+||.+
T Consensus 55 ~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~-~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~ 133 (152)
T 3n90_A 55 DADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGN-TSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATT 133 (152)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSS-CBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTT
T ss_pred ccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCC-ceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCcc
Confidence 4455555555555555666666666666666666666666 4 7888899999999999999999999999999999999
Q ss_pred ccccccccCC
Q 033564 106 GNATRDTLLC 115 (116)
Q Consensus 106 ~~~~~~~l~~ 115 (116)
+++|++.|-|
T Consensus 134 ~~~tr~~~~~ 143 (152)
T 3n90_A 134 GNATRDTLLC 143 (152)
T ss_dssp CCBHHHHTTT
T ss_pred ccchhhhhhh
Confidence 9999998865
No 2
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.83 E-value=2.8e-21 Score=135.67 Aligned_cols=84 Identities=44% Similarity=0.616 Sum_probs=61.9
Q ss_pred CCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHhhhccCCCCcccccccc
Q 033564 32 GADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLCKVADGVNPTTGNATRD 111 (116)
Q Consensus 32 ~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~~~~~g~~~~~~~~~~~ 111 (116)
+++|++++|++++|.+++|++|+|++++|.+++|.+ ++|.+++|++++|++|+|++++++++|.+++|+||.+.+-|+.
T Consensus 101 ~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~~a~l~~-a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~ 179 (184)
T 2f3l_A 101 GADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMR-TKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRE 179 (184)
T ss_dssp TCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEE-EECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHH
T ss_pred CCeEEEeecccceecCcEeCccEeCCCEeeCCEECC-CEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhh
Confidence 333333333333444444455555555555555566 7888888899999999999999999999999999999999999
Q ss_pred ccCCC
Q 033564 112 TLLCN 116 (116)
Q Consensus 112 ~l~~~ 116 (116)
.|||+
T Consensus 180 sl~c~ 184 (184)
T 2f3l_A 180 SLRCQ 184 (184)
T ss_dssp HTTC-
T ss_pred hcCCC
Confidence 99995
No 3
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.66 E-value=5.2e-17 Score=110.39 Aligned_cols=84 Identities=29% Similarity=0.315 Sum_probs=34.1
Q ss_pred cccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhhHHHHh----hhccCCCCc
Q 033564 29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQREYLC----KVADGVNPT 104 (116)
Q Consensus 29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~l~~~~----~~~~g~~~~ 104 (116)
+|++++|++++|++++|++++|.+++|.+|+|.+++|.+ ++|.+++|.+++|.+++|++++|++.. ..+.|+++.
T Consensus 27 ~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~-a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~ 105 (152)
T 3n90_A 27 TLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSE-ADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNIT 105 (152)
T ss_dssp BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT-CBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCT
T ss_pred CcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCC-CCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEec
Confidence 444444444444444444444444444444444444444 333333333333333333333333221 123444555
Q ss_pred ccccccccc
Q 033564 105 TGNATRDTL 113 (116)
Q Consensus 105 ~~~~~~~~l 113 (116)
+++++...|
T Consensus 106 ~a~~~~a~l 114 (152)
T 3n90_A 106 GADFTDVPL 114 (152)
T ss_dssp TCBCTTCCC
T ss_pred CCEecCCcc
Confidence 554444433
No 4
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.64 E-value=4.6e-17 Score=114.13 Aligned_cols=39 Identities=33% Similarity=0.452 Sum_probs=14.8
Q ss_pred cccCCcccCccccCcccCCceecCceeccCcccCCcccC
Q 033564 29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATG 67 (116)
Q Consensus 29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~ 67 (116)
+|++++|++++|.+++|++++|.+++|.+|+|.+++|.+
T Consensus 68 ~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~ 106 (184)
T 2f3l_A 68 SLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHG 106 (184)
T ss_dssp BCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTT
T ss_pred CcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEE
Confidence 333333333333333333333333333333333333333
No 5
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.55 E-value=2.9e-15 Score=105.81 Aligned_cols=9 Identities=22% Similarity=0.763 Sum_probs=3.7
Q ss_pred cCCcchhcc
Q 033564 16 WGNISYIHC 24 (116)
Q Consensus 16 ~~~~~f~~c 24 (116)
+.++.|.+|
T Consensus 63 l~~~~f~~~ 71 (216)
T 3pss_A 63 LREASFLRC 71 (216)
T ss_dssp CTTCEEESC
T ss_pred ccCCCcCcc
Confidence 334444443
No 6
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.45 E-value=2e-14 Score=115.41 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=22.0
Q ss_pred cccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccC
Q 033564 29 PLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT 82 (116)
Q Consensus 29 ~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~ 82 (116)
+|+|++|++++|++++|++++|++|+|++|+|.+|.|.+ ++|.+|+|++|+|.
T Consensus 67 ~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~-AnLsgAnLsgAnL~ 119 (627)
T 2qyu_A 67 IIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSN-TKFSNSDMNEVFLQ 119 (627)
T ss_dssp CEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTT-CEEESCBCTTCEEC
T ss_pred ccCCCccCCCccCCCCCCCCccCCcccCCCchhhhcccc-ceECCcCCCCcccC
Confidence 444444444444444444444444444444444443333 33333333333333
No 7
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.39 E-value=1e-13 Score=111.31 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred ccCCcccCCcccCccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccC--CCcCChhhHH
Q 033564 25 LLLFPLSGADLSDADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFT--DVPLRDDQRE 92 (116)
Q Consensus 25 ~~~~~l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~--~a~l~~~~l~ 92 (116)
+.+++|++++|++++|++++|.+|+|++|+|++|+|.+|+|.+ |+|.+|+|.+|+|+ +|+|++++|.
T Consensus 68 L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsg-AnLsgAnL~gA~L~~~gAnLsgAdL~ 136 (627)
T 2qyu_A 68 IKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSN-SDMNEVFLQYSITTQQQPSFIDTTLK 136 (627)
T ss_dssp EESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEES-CBCTTCEECCCTTCCSCCEEEEEECT
T ss_pred cCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECC-cCCCCcccCCccccCCCCeeCCCCCC
Confidence 3355555555555555555555555555555555555555555 55555555544443 3444444443
No 8
>1m8n_A Antifreeze protein isoform 501; LEFT-handed beta-helix; 2.45A {Choristoneura fumiferana} SCOP: b.81.2.1 PDB: 1z2f_A
Probab=7.91 E-value=69 Score=20.12 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred CccccCcccCCceecCceeccCcccCCcccCceeccCCeecCCccCCCcCChhh
Q 033564 37 DADLRSADFSLANVTKANLSNANLEGALATGNTSFRGSNITGADFTDVPLRDDQ 90 (116)
Q Consensus 37 ~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~~~~f~~~~l~~a~~~~a~l~~~~ 90 (116)
++.+.+++...+...+|+..++.+...--.+ ..+.|+.+..+--.++.+++.+
T Consensus 40 ~Sqy~~a~v~~SttTnC~IdNSQv~tTTCT~-SqY~g~~itsSTTT~~~Isg~~ 92 (121)
T 1m8n_A 40 RSQYSDANVKKSVTTDCNIDKSQVYLTTCTG-SQYNGIYIRSSTTTGTSISGPG 92 (121)
T ss_dssp SCEEESCEEESCEEESCEEESCEEESCEEES-CEEEEEEEESCEEESEEEEEEE
T ss_pred ccccccceeeeeecccceeccceeeeeeecC-cccCCeEEEEeeecCccccCCc
No 9
>1l0s_A Thermal hysteresis protein; LEFT-handed beta-helix, antifreeze protein, iodination; HET: TYI; 2.30A {Choristoneura fumiferana} SCOP: b.81.2.1 PDB: 1eww_A 1n4i_A
Probab=4.81 E-value=2.1e+02 Score=16.87 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=0.0
Q ss_pred ccCCcccCccccCcccCCceecCceeccCcccCCcccC-ceeccCCeecC
Q 033564 30 LSGADLSDADLRSADFSLANVTKANLSNANLEGALATG-NTSFRGSNITG 78 (116)
Q Consensus 30 l~~~~f~~~~l~~~~f~~~~~~~a~f~~a~l~~a~f~~-~~~f~~~~l~~ 78 (116)
+.+|.+.++......-.++.+.++....+.-.++++++ ++....|-+.+
T Consensus 22 lTNCyidnSqv~~TTCTnSqy~gv~ITsSTtT~trIsGp~csis~ctit~ 71 (90)
T 1l0s_A 22 LTNCXVDKSEVFGTTCTGSRFDGVTITTSTSTGSRISGPGCKISTCIITG 71 (90)
T ss_dssp EESCEEEEEEEESCEEESCEEEEEEEESCEEESEEEEEEEEEEESCEEET
T ss_pred ccceeeecceEEEeeccCcccccEEEEeecccCceeeCCCceeEEEEEeC
No 10
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=3.78 E-value=3.8e+02 Score=16.82 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=0.0
Q ss_pred cCChhhHHHHhhhccCCCCcc
Q 033564 85 PLRDDQREYLCKVADGVNPTT 105 (116)
Q Consensus 85 ~l~~~~l~~~~~~~~g~~~~~ 105 (116)
.++.-.++.+.+|+.++++.+
T Consensus 11 ~l~~ee~~el~~WL~~l~Ls~ 31 (127)
T 2ee7_A 11 SVDEEALHQLYLWVDNIPLSR 31 (127)
T ss_dssp SCCHHHHHHHHHHHHHSCCSC
T ss_pred CCCHHHHHHHHHHHHcCCCCC
Done!