BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033565
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 80/116 (68%)
Query: 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
MS F+ V L KD+PD+EGDK FG+++ V LG+++V CV ++ +AY A++ GA+S
Sbjct: 278 MSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSP 337
Query: 61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
F+ +K++S++GH ILA LW ++K VDL + YM IWKL Y EY+L+ FL+
Sbjct: 338 FIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 112 bits (281), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/116 (44%), Positives = 81/116 (69%)
Query: 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
M+ F+ V L KD+PD+EGD+ FG+K+ V LG++KV +CV ++ +AY A++ GA+S+
Sbjct: 289 MTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSA 348
Query: 61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
+ +K +++GH ILA ILW +S+ +DL + + FYM IWKL Y EY+LI +R
Sbjct: 349 CLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLFYAEYLLIPLVR 404
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 80/116 (68%)
Query: 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
+S++A V L KD+PD+EGD+KFG+++L + LG ++V +CV+++ + YG ++ GA+S
Sbjct: 295 VSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSP 354
Query: 61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
+ +KI++++GH +LA +LW +K VDL + FYM IWKL+ EY LI R
Sbjct: 355 ILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYFLIPLFR 410
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 74/116 (63%)
Query: 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
M+ ++ L KD+PDVEGDK+ G+ + V LG+++ +CV+ +A+G +++GAS S
Sbjct: 294 MTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCS 353
Query: 61 FMINKIVSIIGHGILALILWLQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116
KI + +G+ +LA ILW Q+K VDL + ST FYM IWKL Y + L+ +R
Sbjct: 354 HFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWKLLYAGFFLMALIR 409
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
+++FA V + KDLPDVEGD+KF + TL LG + L ++LV Y +S S +
Sbjct: 270 VTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY----VSAISLA 325
Query: 61 FMINKI----VSIIGHGILALILWLQSKKVDLDNF--ESTFGFYMLIWKLNYVEYILIHF 114
F + ++ + I H ILA L Q+ ++ N+ E+ G+Y IW L Y EY+L F
Sbjct: 326 FYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPF 385
Query: 115 L 115
L
Sbjct: 386 L 386
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSS 60
+++FA V + KDLPDVEGD+K+ + TL LG + L +++ Y A+
Sbjct: 263 VTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMP 322
Query: 61 FMINKIVSIIGHGILALILWLQSKKVDLDNF--ESTFGFYMLIWKLNYVEYIL 111
+ V + H LA+ + Q+ ++ + ++ +Y IW L Y EYI
Sbjct: 323 QAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQYYRFIWNLFYAEYIF 375
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ D EGDK+ G +TL +++GK+K
Sbjct: 172 IMKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ D+EGD K G KTL +++GK +
Sbjct: 172 IMKDIEDIEGDMKMGAKTLPIIIGKRR 198
>sp|P39582|MENA_BACSU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Bacillus subtilis (strain 168) GN=menA PE=3 SV=1
Length = 311
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAY---GGAMISGASSSFM 62
L ++ D+E DKK G KTL +L+G + + L VAY G +I+GA+S ++
Sbjct: 202 LSNNIRDIEEDKKGGRKTLAILMGHKGAVTLLAASFAVAYIWVVGLVITGAASPWL 257
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ DVEGD K G KTL ++LG+ K
Sbjct: 172 IVKDIEDVEGDLKKGAKTLPIILGRRK 198
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ D+EGDK G +TL +++G++K
Sbjct: 172 IMKDIEDIEGDKALGARTLPIIIGEKK 198
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
++KD+ D++GD+K G++TL +++G + ++LVA
Sbjct: 180 IIKDIEDLDGDRKEGLQTLPIVIGVTPAYRVATGVLLVA 218
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 7 VNGLLKDLPDVEGDKKFGMKTLCVLLGK 34
V +LKDL DVEGD G+KTL + G+
Sbjct: 165 VREILKDLEDVEGDAALGLKTLPIAYGE 192
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVL 38
F ++KD+ D+ GD+ G++TL V++G ++ L
Sbjct: 169 FAREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVL 38
F ++KD+ D+ GD+ G++TL V++G ++ L
Sbjct: 169 FAREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ D+ GDKK G +TL +L+G +K
Sbjct: 180 IVKDVEDIVGDKKDGARTLPILIGAKK 206
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ D+EGD G KTL +L+G+++
Sbjct: 172 VIKDIEDIEGDMAKGAKTLPILIGRKR 198
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKV 37
LLKD D+EGD+ G TL + +G K
Sbjct: 172 LLKDAEDIEGDRAHGADTLAIRIGVRKT 199
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVL 38
++KD+ D++GD+ G++TL +++G+ + L
Sbjct: 173 IVKDVEDIDGDRAEGLRTLPIVIGERRSL 201
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 4 FAFVNGL----LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCV 42
FAF+ L +KD+ D+EGDKK TL ++ G +K + L V
Sbjct: 157 FAFLMTLSREIIKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199
>sp|O29487|Y771_ARCFU Uncharacterized protein AF_0771 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0771 PE=4 SV=1
Length = 289
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 4 FAFVNGL-LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
F +++G LKDL D+ D K G +TL V+L +L + V M+ +A
Sbjct: 175 FTYLSGFFLKDLKDISADIKSGYRTLAVVLSPSTLLIISV-MLFIA 219
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
++KD+ DVEGD G KTL ++ GK++
Sbjct: 172 VIKDIEDVEGDMAKGAKTLPIIWGKKR 198
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEK 36
F +K + D+EGDK+ G+ TL V LG++
Sbjct: 166 FTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKS 198
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 11 LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
L D +EGD++ G+++L V+LG E L +M +A
Sbjct: 194 LNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMA 231
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEK 36
+ KD+ D+EGDK G KTL ++ G E
Sbjct: 172 IFKDIEDIEGDKAQGAKTLPIVWGIES 198
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
LLKD D+EGD+ G +TL + +G K L V +L A
Sbjct: 172 LLKDAEDIEGDRLGGARTLPMQIGVRKTSVLAVIFVLFA 210
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
++KD+ DVEGD+ G TL + G L + ML+A
Sbjct: 167 IVKDMEDVEGDRAEGATTLPITHGMRISGVLAASFMLIA 205
>sp|P38147|CHK1_YEAST Serine/threonine-protein kinase CHK1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHK1 PE=1 SV=1
Length = 527
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 28 LCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIG 71
LC LLG + V PL +N+ + GG + G+ S I + + +G
Sbjct: 454 LCELLGYDNVFPLIINIKTKSNGGYQLCGSISIIKIEEELKSVG 497
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVA 48
++KD+ D+ GD G KTL +GK K L +++VA
Sbjct: 169 IVKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVA 207
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEK 36
F +K + DV+GD G+KTL V +G EK
Sbjct: 169 FTLTREFVKGIEDVKGDMTNGVKTLAVRVGIEK 201
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 9 GLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCV---NMMLVAYGGAMISGASSSFMINK 65
++ D VEGD+ G+++L V G E +CV ++ ++ G +++ + +
Sbjct: 281 AIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAIDITQLSVAGYLLASGKPYYALAL 340
Query: 66 IVSII 70
+ II
Sbjct: 341 VALII 345
>sp|P17628|YSP1_LEPIR Uncharacterized 35 kDa protein in sph 3'region OS=Leptospira
interrogans PE=4 SV=1
Length = 303
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 16 DVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSI--IGHG 73
D +G+ KFG++TL +L G + PL ++ G + + S + +K+ ++ +G G
Sbjct: 201 DKQGNDKFGIETLSLLPGMKYYFPLSESIFWFTQVGLGVGKSIESGVHSKVQTVLFVGTG 260
Query: 74 ILALI------LWLQSKKVDL 88
I + + LQ +K DL
Sbjct: 261 IQWELESYFFNIALQYRKTDL 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.145 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,970,068
Number of Sequences: 539616
Number of extensions: 1522535
Number of successful extensions: 3868
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3835
Number of HSP's gapped (non-prelim): 40
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)