Query 033565
Match_columns 116
No_of_seqs 200 out of 363
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 4.9E-47 1.1E-51 307.0 13.4 116 1-116 165-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 8.5E-41 1.8E-45 270.9 13.2 115 2-116 192-306 (308)
3 PRK13591 ubiA prenyltransferas 99.4 7.9E-13 1.7E-17 108.8 6.8 86 6-91 193-278 (307)
4 PRK12872 ubiA prenyltransferas 99.3 3E-11 6.6E-16 95.2 11.3 56 4-59 173-228 (285)
5 COG0382 UbiA 4-hydroxybenzoate 99.3 9.1E-11 2E-15 93.6 12.4 109 2-113 177-285 (289)
6 TIGR01475 ubiA_other putative 99.2 2E-10 4.3E-15 91.4 10.6 88 6-96 172-259 (282)
7 TIGR01476 chlor_syn_BchG bacte 99.2 2.5E-10 5.4E-15 90.7 10.1 52 3-54 172-223 (283)
8 PRK13105 ubiA prenyltransferas 99.1 2.1E-10 4.5E-15 93.1 8.7 54 3-56 171-224 (282)
9 PLN02809 4-hydroxybenzoate non 99.1 3.3E-10 7.1E-15 91.7 9.6 90 9-102 183-273 (289)
10 PRK12882 ubiA prenyltransferas 99.1 9.1E-10 2E-14 87.2 11.0 87 6-94 171-257 (276)
11 PRK13595 ubiA prenyltransferas 99.1 3.7E-10 8E-15 92.5 9.0 94 2-105 179-272 (292)
12 PRK06080 1,4-dihydroxy-2-napht 99.0 1.1E-09 2.3E-14 87.2 9.0 57 3-59 179-235 (293)
13 PRK12895 ubiA prenyltransferas 99.0 1.8E-09 3.8E-14 87.7 10.0 90 5-98 172-262 (286)
14 PRK12884 ubiA prenyltransferas 99.0 2.3E-09 5E-14 84.6 10.2 54 4-57 167-220 (279)
15 PRK12392 bacteriochlorophyll c 99.0 1.4E-09 2.9E-14 89.9 9.2 56 4-59 192-247 (331)
16 PF01040 UbiA: UbiA prenyltran 99.0 5.8E-09 1.3E-13 79.1 11.8 37 3-39 157-193 (257)
17 PRK12888 ubiA prenyltransferas 99.0 5E-09 1.1E-13 84.5 11.5 91 5-98 172-263 (284)
18 PRK05951 ubiA prenyltransferas 99.0 7.9E-09 1.7E-13 83.3 12.4 95 5-100 184-278 (296)
19 PRK13106 ubiA prenyltransferas 99.0 3.5E-09 7.6E-14 86.3 10.2 95 4-103 189-283 (300)
20 TIGR02056 ChlG chlorophyll syn 98.9 7E-09 1.5E-13 84.1 10.1 52 3-54 194-245 (306)
21 PRK09573 (S)-2,3-di-O-geranylg 98.9 1.6E-08 3.5E-13 80.4 11.6 50 4-53 166-215 (279)
22 PLN00012 chlorophyll synthetas 98.9 1.6E-08 3.5E-13 84.9 11.3 51 3-53 263-313 (375)
23 PRK12847 ubiA 4-hydroxybenzoat 98.9 1.3E-08 2.8E-13 81.2 10.2 85 6-94 179-263 (285)
24 PRK12883 ubiA prenyltransferas 98.9 2.5E-08 5.5E-13 79.0 10.4 42 4-45 166-207 (277)
25 PRK12876 ubiA prenyltransferas 98.9 5.7E-08 1.2E-12 79.8 12.4 108 7-114 187-297 (300)
26 PRK07566 bacteriochlorophyll/c 98.8 2.1E-08 4.6E-13 81.6 9.4 50 4-53 201-250 (314)
27 TIGR01474 ubiA_proteo 4-hydrox 98.8 7E-08 1.5E-12 77.2 10.0 88 5-96 173-260 (281)
28 PRK12871 ubiA prenyltransferas 98.7 8.5E-08 1.8E-12 78.0 9.9 86 5-94 188-273 (297)
29 PRK12870 ubiA 4-hydroxybenzoat 98.7 8.4E-08 1.8E-12 77.4 9.4 95 5-103 179-276 (290)
30 PRK12886 ubiA prenyltransferas 98.7 2.3E-07 5.1E-12 75.0 10.2 80 8-90 178-257 (291)
31 PRK12875 ubiA prenyltransferas 98.6 5.6E-08 1.2E-12 78.7 6.2 54 3-56 176-229 (282)
32 PRK12874 ubiA prenyltransferas 98.6 3.9E-07 8.5E-12 73.8 11.1 89 5-96 180-268 (291)
33 TIGR00751 menA 1,4-dihydroxy-2 98.6 4.8E-07 1E-11 73.2 10.8 55 3-57 175-229 (284)
34 PRK12848 ubiA 4-hydroxybenzoat 98.6 3.1E-07 6.7E-12 73.5 9.3 87 12-102 182-269 (282)
35 PRK13387 1,4-dihydroxy-2-napht 98.6 1.5E-07 3.3E-12 77.0 7.0 54 5-58 202-255 (317)
36 PRK12878 ubiA 4-hydroxybenzoat 98.6 6E-07 1.3E-11 73.5 10.3 88 7-98 207-294 (314)
37 PRK13592 ubiA prenyltransferas 98.5 7.3E-07 1.6E-11 73.6 8.1 47 3-51 186-232 (299)
38 TIGR02235 menA_cyano-plnt 1,4- 98.4 6.8E-07 1.5E-11 72.4 7.2 55 4-58 173-227 (285)
39 PRK07419 1,4-dihydroxy-2-napht 98.4 8E-07 1.7E-11 72.7 7.3 55 4-58 186-240 (304)
40 PLN02922 prenyltransferase 98.4 1.8E-06 3.9E-11 70.9 9.3 55 5-59 201-255 (315)
41 PRK12873 ubiA prenyltransferas 98.2 6.4E-06 1.4E-10 67.5 8.4 92 8-103 186-280 (294)
42 PRK12869 ubiA protoheme IX far 98.0 3E-05 6.6E-10 62.0 8.8 89 13-104 180-269 (279)
43 TIGR01473 cyoE_ctaB protoheme 97.9 9.4E-05 2E-09 58.9 9.5 89 14-104 180-270 (280)
44 PRK04375 protoheme IX farnesyl 97.8 0.00027 5.9E-09 57.0 10.0 37 11-50 189-225 (296)
45 COG1575 MenA 1,4-dihydroxy-2-n 97.4 0.0021 4.5E-08 53.5 10.6 49 7-55 191-239 (303)
46 PRK13362 protoheme IX farnesyl 96.8 0.011 2.5E-07 48.3 9.2 33 11-43 189-221 (306)
47 KOG4581 Predicted membrane pro 88.4 0.6 1.3E-05 38.8 3.7 52 12-63 249-300 (359)
48 KOG1381 Para-hydroxybenzoate-p 87.2 1.3 2.8E-05 37.5 5.0 86 14-103 246-332 (353)
49 PLN02776 prenyltransferase 80.5 28 0.0006 29.5 10.3 32 18-49 177-210 (341)
50 PF06645 SPC12: Microsomal sig 74.4 23 0.00049 23.6 6.9 46 33-78 5-50 (76)
51 TIGR02056 ChlG chlorophyll syn 54.6 68 0.0015 26.1 7.1 38 8-46 70-110 (306)
52 COG0382 UbiA 4-hydroxybenzoate 52.7 69 0.0015 25.5 6.8 25 9-33 64-89 (289)
53 PRK12884 ubiA prenyltransferas 52.5 86 0.0019 24.6 7.2 37 8-45 53-92 (279)
54 TIGR00886 2A0108 nitrite extru 51.1 1.1E+02 0.0024 23.4 8.4 22 30-51 62-83 (366)
55 cd00867 Trans_IPPS Trans-Isopr 46.7 23 0.00051 26.5 3.0 32 9-40 163-204 (236)
56 TIGR00899 2A0120 sugar efflux 46.2 1.3E+02 0.0029 23.0 9.7 19 85-103 315-333 (375)
57 PRK10133 L-fucose transporter; 45.5 1.8E+02 0.0038 24.2 9.1 77 28-104 84-164 (438)
58 PRK12887 ubiA tocopherol phyty 44.5 1E+02 0.0023 25.2 6.7 23 11-34 72-94 (308)
59 PF01040 UbiA: UbiA prenyltran 39.8 1.6E+02 0.0034 22.0 7.5 31 6-36 37-68 (257)
60 PRK12882 ubiA prenyltransferas 38.5 1.7E+02 0.0036 23.1 6.9 36 9-45 55-93 (276)
61 PRK10581 geranyltranstransfera 38.2 54 0.0012 26.7 4.1 38 10-47 221-269 (299)
62 TIGR01476 chlor_syn_BchG bacte 37.9 1.1E+02 0.0023 24.3 5.7 34 9-43 55-91 (283)
63 PRK12324 phosphoribose diphosp 37.1 1.3E+02 0.0029 24.6 6.3 41 8-48 62-106 (295)
64 TIGR02332 HpaX 4-hydroxyphenyl 35.1 2.5E+02 0.0053 22.8 8.3 74 30-103 68-142 (412)
65 TIGR00890 2A0111 Oxalate/Forma 33.9 2E+02 0.0044 21.6 8.1 22 29-50 62-83 (377)
66 PRK09705 cynX putative cyanate 33.3 2.5E+02 0.0055 22.5 7.5 46 30-75 69-114 (393)
67 TIGR00880 2_A_01_02 Multidrug 33.0 1.3E+02 0.0028 18.9 8.9 20 31-50 24-43 (141)
68 PRK09848 glucuronide transport 32.8 2.7E+02 0.0059 22.6 8.5 24 30-53 289-312 (448)
69 COG0109 CyoE Polyprenyltransfe 32.4 3.1E+02 0.0067 23.1 8.5 25 21-45 204-228 (304)
70 PRK11102 bicyclomycin/multidru 32.4 2.4E+02 0.0051 21.8 9.3 17 31-47 256-272 (377)
71 PRK12872 ubiA prenyltransferas 31.4 2.5E+02 0.0055 21.9 8.6 20 5-24 49-68 (285)
72 PRK12382 putative transporter; 30.5 2.7E+02 0.0058 21.9 7.1 21 84-104 329-349 (392)
73 PRK09573 (S)-2,3-di-O-geranylg 30.0 1.7E+02 0.0036 23.2 5.6 38 9-47 54-94 (279)
74 TIGR00895 2A0115 benzoate tran 30.0 2.2E+02 0.0047 21.7 6.1 21 31-51 78-98 (398)
75 TIGR00901 2A0125 AmpG-related 29.4 2.7E+02 0.0058 21.5 9.2 23 81-103 333-355 (356)
76 PRK10473 multidrug efflux syst 28.2 3E+02 0.0064 21.6 8.1 21 31-51 64-84 (392)
77 KOG4112 Signal peptidase subun 28.0 2.3E+02 0.005 20.3 6.8 42 33-74 20-61 (101)
78 KOG3012 Uncharacterized conser 27.5 3.6E+02 0.0077 22.3 8.3 71 45-115 93-183 (259)
79 PRK07566 bacteriochlorophyll/c 26.5 1.1E+02 0.0023 25.0 4.1 38 9-47 82-122 (314)
80 PRK12392 bacteriochlorophyll c 26.5 2.5E+02 0.0055 23.3 6.3 39 10-49 68-109 (331)
81 PF09737 Det1: De-etiolated pr 25.5 84 0.0018 27.5 3.4 38 66-104 147-192 (407)
82 PLN00012 chlorophyll synthetas 25.0 3.3E+02 0.0071 23.2 6.8 24 9-33 140-163 (375)
83 PRK05122 major facilitator sup 25.0 3.3E+02 0.0072 21.4 6.5 74 31-104 77-159 (399)
84 PF14972 Mito_morph_reg: Mitoc 24.8 97 0.0021 24.1 3.3 61 29-89 39-105 (165)
85 PF05788 Orbi_VP1: Orbivirus R 24.6 42 0.00091 33.1 1.5 37 11-47 834-870 (1301)
86 PF04165 DUF401: Protein of un 24.0 47 0.001 28.4 1.6 21 86-106 125-145 (385)
87 TIGR00900 2A0121 H+ Antiporter 23.9 3.1E+02 0.0068 20.5 8.8 21 31-51 60-80 (365)
88 PF07062 Clc-like: Clc-like; 23.9 3.7E+02 0.008 21.3 7.4 45 15-59 84-128 (211)
89 PRK15011 sugar efflux transpor 22.8 3.9E+02 0.0086 21.2 10.0 19 86-104 333-351 (393)
90 PF08390 TRAM1: TRAM1-like pro 22.8 77 0.0017 20.3 2.1 24 93-116 30-56 (65)
91 COG2211 MelB Na+/melibiose sym 22.8 1.5E+02 0.0032 26.2 4.4 63 27-89 294-359 (467)
92 TIGR00891 2A0112 putative sial 22.7 3.6E+02 0.0077 20.7 8.6 18 31-48 73-90 (405)
93 TIGR01475 ubiA_other putative 22.6 1.2E+02 0.0025 24.1 3.5 36 7-42 51-90 (282)
94 PF05620 DUF788: Protein of un 22.5 3.3E+02 0.0072 20.3 10.0 29 86-114 84-125 (170)
95 TIGR00898 2A0119 cation transp 22.1 3.9E+02 0.0085 21.9 6.6 20 29-48 151-170 (505)
96 TIGR00893 2A0114 d-galactonate 21.5 3.5E+02 0.0077 20.2 5.9 19 30-48 54-72 (399)
97 PF04304 DUF454: Protein of un 21.2 2.2E+02 0.0049 17.8 5.3 43 35-79 26-68 (71)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=4.9e-47 Score=307.04 Aligned_cols=116 Identities=50% Similarity=0.945 Sum_probs=113.9
Q ss_pred CcHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 033565 1 MSVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILW 80 (116)
Q Consensus 1 ~~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw 80 (116)
|++|+.+++++||+||+||||++|++|+|+++|+|+++++|..++.+||++++++|++++..+++++|+.||+++++++|
T Consensus 165 ~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~ 244 (280)
T PLN02878 165 MCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILW 244 (280)
T ss_pred HHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 033565 81 LQSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116 (116)
Q Consensus 81 ~r~~~vdl~~k~ai~~fY~fIWkLFy~EYll~P~~~ 116 (116)
+|+++||++||++|+|||||||||||+||+++|++|
T Consensus 245 ~rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 245 QRAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HHhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999987
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=8.5e-41 Score=270.91 Aligned_cols=115 Identities=35% Similarity=0.648 Sum_probs=112.1
Q ss_pred cHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 033565 2 SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWL 81 (116)
Q Consensus 2 ~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~ 81 (116)
.+++++++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+++++.|+.....+++.+++.||+++++.+|+
T Consensus 192 ~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
T PRK12887 192 LVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWW 271 (308)
T ss_pred HHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCChhhHHHHHHHHHHHHHHHHHhhhhcC
Q 033565 82 QSKKVDLDNFESTFGFYMLIWKLNYVEYILIHFLR 116 (116)
Q Consensus 82 r~~~vdl~~k~ai~~fY~fIWkLFy~EYll~P~~~ 116 (116)
|++++|++||+||+|||||||||||+||+++|++|
T Consensus 272 ~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 272 RSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986
No 3
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.38 E-value=7.9e-13 Score=108.82 Aligned_cols=86 Identities=23% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565 6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK 85 (116)
Q Consensus 6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~ 85 (116)
++++++||++|+|||++.|.+|+|+++|++++.++...+..++|+..++........+...+.+-+-.+-...+|+.+++
T Consensus 193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~ 272 (307)
T PRK13591 193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP 272 (307)
T ss_pred HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence 77889999999999999999999999999999999999999999998877776655666666666667777778877777
Q ss_pred ccCCCh
Q 033565 86 VDLDNF 91 (116)
Q Consensus 86 vdl~~k 91 (116)
.|-+++
T Consensus 273 ~~~~~~ 278 (307)
T PRK13591 273 FENEPS 278 (307)
T ss_pred cccCcH
Confidence 766554
No 4
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.30 E-value=3e-11 Score=95.20 Aligned_cols=56 Identities=30% Similarity=0.485 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS 59 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 59 (116)
..+.++++||+||+|||++.|++|+|+++|+|++.+++..+...+++..+......
T Consensus 173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~ 228 (285)
T PRK12872 173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTG 228 (285)
T ss_pred HHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677899999999999999999999999999999999999999999888665544
No 5
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.27 E-value=9.1e-11 Score=93.58 Aligned_cols=109 Identities=24% Similarity=0.411 Sum_probs=86.6
Q ss_pred cHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 033565 2 SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWL 81 (116)
Q Consensus 2 ~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~ 81 (116)
.+.+.+.+++||+||+||||+.|++|+|+.+|++++.+++.... .+.......+...... ...-..++...+..+++
T Consensus 177 ~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 253 (289)
T COG0382 177 ILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGLL--GLIYLLGLLVAALLLLY 253 (289)
T ss_pred HHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999877 5555555455443222 15778888899999999
Q ss_pred HHhhccCCChhhHHHHHHHHHHHHHHHHHhhh
Q 033565 82 QSKKVDLDNFESTFGFYMLIWKLNYVEYILIH 113 (116)
Q Consensus 82 r~~~vdl~~k~ai~~fY~fIWkLFy~EYll~P 113 (116)
|...+|.++++....++..-..+-.+..+...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (289)
T COG0382 254 QILIVDVRDPPACFALFDVNLLLGLLLFIGLI 285 (289)
T ss_pred HHHHhcccChHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998888888888887776666555443
No 6
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.19 E-value=2e-10 Score=91.38 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=69.5
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565 6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK 85 (116)
Q Consensus 6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~ 85 (116)
....+++|.||.|||++.|++|+|+++|+|++.+++..+..++++...+.+...... ..-..+..+.+..++++.+.
T Consensus 172 ~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g---~~y~~~~~~~~~~l~~~~~~ 248 (282)
T TIGR01475 172 AGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNG---YIALLALILIGLILAYEHYI 248 (282)
T ss_pred HHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCc---HHHHHHHHHHHHHHHHHHHH
Confidence 355689999999999999999999999999999999988888888877777654332 22234555666778888889
Q ss_pred ccCCChhhHHH
Q 033565 86 VDLDNFESTFG 96 (116)
Q Consensus 86 vdl~~k~ai~~ 96 (116)
+|.+|+++..+
T Consensus 249 ~~~~~~~~~~~ 259 (282)
T TIGR01475 249 VDPGDQSKIQR 259 (282)
T ss_pred cCCCCHHHHHH
Confidence 99888776543
No 7
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.17 E-value=2.5e-10 Score=90.71 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMI 54 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~ 54 (116)
+++..+..+||++|+|||++.|.+|+|+++|+|++.+++..++.++|+..+.
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999988888876664
No 8
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.14 E-value=2.1e-10 Score=93.05 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISG 56 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g 56 (116)
+++.+++++||+||+||||+.|.+|+|+++|+|++.+++..+..++++..+..|
T Consensus 171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 171 LWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999999999999999999999999999999999998888555
No 9
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.14 E-value=3.3e-10 Score=91.72 Aligned_cols=90 Identities=24% Similarity=0.230 Sum_probs=70.9
Q ss_pred HHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 033565 9 GLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDL 88 (116)
Q Consensus 9 aI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl 88 (116)
.++.+.+|+|+|++.|++|+|+++|+++..+++. +...+++....+|... ..+.... .+|++.+..+++|.+.||+
T Consensus 183 d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~~~v~~ 258 (289)
T PLN02809 183 DTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQIQTVDL 258 (289)
T ss_pred HHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 5778889999999999999999999997777774 6666777777777644 3344444 4899999999999999999
Q ss_pred CChhhH-HHHHHHHH
Q 033565 89 DNFEST-FGFYMLIW 102 (116)
Q Consensus 89 ~~k~ai-~~fY~fIW 102 (116)
+|++++ ..|.+..|
T Consensus 259 ~~~~~~~~~F~~n~~ 273 (289)
T PLN02809 259 SSRADCNRKFVSNKW 273 (289)
T ss_pred CCHHHHHHHHHhCCH
Confidence 998876 44554444
No 10
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.11 E-value=9.1e-10 Score=87.22 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=55.4
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565 6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK 85 (116)
Q Consensus 6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~ 85 (116)
+..+++||+||+|||++.|++|+|+++|+|++.+++..+...+.......-.. ...+....+..=...+..++...+.
T Consensus 171 ~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~~~~l~~~~~~ 248 (276)
T PRK12882 171 LAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL--STFGLWYLVLVAPADLVMLAAAYRS 248 (276)
T ss_pred HHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999887766655444321111 1112222222222223334445556
Q ss_pred ccCCChhhH
Q 033565 86 VDLDNFEST 94 (116)
Q Consensus 86 vdl~~k~ai 94 (116)
+|.+|+++.
T Consensus 249 ~~~~~~~~~ 257 (276)
T PRK12882 249 LKKTDPTAS 257 (276)
T ss_pred HcCCCHHHH
Confidence 666665444
No 11
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.11 E-value=3.7e-10 Score=92.49 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=62.4
Q ss_pred cHHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 033565 2 SVFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWL 81 (116)
Q Consensus 2 ~~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~ 81 (116)
.+|+.+.+++||+||+||||+.|+||+|+++|+|++.++|..+.+++-.....+. .+...- ....-.+.+.-+|
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~~--~~~~~~---~~~~~~~~~~~~~- 252 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPVS--RLTALA---LWLICGGMALALW- 252 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHhc--chHHHH---HHHHHHHHHHHHh-
Confidence 3577888999999999999999999999999999999999987766655444322 222211 2222223333344
Q ss_pred HHhhccCCChhhHHHHHHHHHHHH
Q 033565 82 QSKKVDLDNFESTFGFYMLIWKLN 105 (116)
Q Consensus 82 r~~~vdl~~k~ai~~fY~fIWkLF 105 (116)
-|.+..++=..+=.|+|--+
T Consensus 253 ----~~~~~~~~~~~~~~~~~~~~ 272 (292)
T PRK13595 253 ----RRPTPETAHRLYPLSIVTPW 272 (292)
T ss_pred ----cCCCHHHHhccchHHHHHhH
Confidence 45554555555556676443
No 12
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.05 E-value=1.1e-09 Score=87.17 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS 59 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 59 (116)
+++..+.+.+|++|+|||++.|.+|+|+++|++++.++...+..++|+..+...+..
T Consensus 179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 179 LLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred HHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667799999999999999999999999999999999999999999888766554
No 13
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.04 E-value=1.8e-09 Score=87.71 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
+.+-.+++|.+|+|+|++.|++|+|+++|++++.+++..+..++.....+.|.... + ..-..|=.+.+..+.+|.+
T Consensus 172 ~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~-~~y~~~~~~~~~~l~~q~~ 247 (286)
T PRK12895 172 IAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---T-LWYLAALIIIYTLVIYQHL 247 (286)
T ss_pred HHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---h-HHHHHHHHHHHHHHHHHHH
Confidence 44556999999999999999999999999999998887777777666666675542 2 2233556677778889999
Q ss_pred hccCCChhhH-HHHH
Q 033565 85 KVDLDNFEST-FGFY 98 (116)
Q Consensus 85 ~vdl~~k~ai-~~fY 98 (116)
.+|.+|.++. ..|+
T Consensus 248 ~~~~~~~~~~~~~~F 262 (286)
T PRK12895 248 IIDPRNPINKRMSFF 262 (286)
T ss_pred HhcCCCHHHHHHHHH
Confidence 9999988777 4433
No 14
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.03 E-value=2.3e-09 Score=84.61 Aligned_cols=54 Identities=24% Similarity=0.386 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHh
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGA 57 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~ 57 (116)
.+....+.+|++|+|||++.|++|+|+++|+|++.+++..+....++..++.+.
T Consensus 167 ~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 167 MTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred HHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999999998888877776554443
No 15
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.03 E-value=1.4e-09 Score=89.86 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS 59 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 59 (116)
.+++..++||++|+|||++.|+||+|+++|++++++++.....++.+..+..+...
T Consensus 192 ~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~ 247 (331)
T PRK12392 192 MAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSW 247 (331)
T ss_pred HHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667789999999999999999999999999999999887767777666666544
No 16
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.03 E-value=5.8e-09 Score=79.15 Aligned_cols=37 Identities=41% Similarity=0.639 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLP 39 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~ 39 (116)
++...+....|++|+|||++.|.+|+|+++|++++..
T Consensus 157 ~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 157 LLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 4556667778999999999999999999999999998
No 17
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.01 E-value=5e-09 Score=84.46 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
+....++++++|.|+|++.|++|+|+++|+|++.+++..+..+.++...+.|......+.-. .+=.+.+..+.+|.+
T Consensus 172 ~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~---~~~~~~~~~l~~~~~ 248 (284)
T PRK12888 172 IGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW---IGLAITAGAFAYEHA 248 (284)
T ss_pred HHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHH
Confidence 44556999999999999999999999999999998887777777766666665443222211 223356667778888
Q ss_pred hccCCChhhH-HHHH
Q 033565 85 KVDLDNFEST-FGFY 98 (116)
Q Consensus 85 ~vdl~~k~ai-~~fY 98 (116)
.+|.+|.+.+ +.|+
T Consensus 249 ~~~~~~~~~~~~~ff 263 (284)
T PRK12888 249 IVSPTDLSRVNRAFF 263 (284)
T ss_pred HcCccCHHHHHHHHH
Confidence 9999987766 4654
No 18
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.00 E-value=7.9e-09 Score=83.35 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
+..+-..++++|+|+|++.|.+|+|+++|+|++ ++-..+...+|+..+.........+.......++......+.++.+
T Consensus 184 ~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~ 262 (296)
T PRK05951 184 MALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLR 262 (296)
T ss_pred HHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344558999999999999999999999999999 6666677778887776665543333344556666666666677777
Q ss_pred hccCCChhhHHHHHHH
Q 033565 85 KVDLDNFESTFGFYML 100 (116)
Q Consensus 85 ~vdl~~k~ai~~fY~f 100 (116)
..|.++.+...+.++.
T Consensus 263 ~~~~~~~~~~~~~~~~ 278 (296)
T PRK05951 263 KFPPDPDEATVQLFML 278 (296)
T ss_pred hCcccccHHHHHHHHH
Confidence 7787777777777665
No 19
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.00 E-value=3.5e-09 Score=86.33 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQS 83 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~ 83 (116)
.+.+.+++||.+|+|||++.|+||+|+++| +++.+++..+...+.....+.|..... +.... .+=.+....+.++.
T Consensus 189 w~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~l--g~~y~-~~~~~~~~~l~~~~ 264 (300)
T PRK13106 189 WAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGL--GPIAI-AATILHGLIMAYAY 264 (300)
T ss_pred HHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHH
Confidence 345566899999999999999999999999 999998888877777777766664422 11111 22234555666777
Q ss_pred hhccCCChhhHHHHHHHHHH
Q 033565 84 KKVDLDNFESTFGFYMLIWK 103 (116)
Q Consensus 84 ~~vdl~~k~ai~~fY~fIWk 103 (116)
+.++.+ ++.-..|.+..|-
T Consensus 265 ~~~~~~-~~~~~~F~~n~~i 283 (300)
T PRK13106 265 YLASKK-GDFGRAFYYNIYS 283 (300)
T ss_pred HHhCCc-hHHHHHHHHccHH
Confidence 888877 5555777666554
No 20
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=98.94 E-value=7e-09 Score=84.10 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMI 54 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~ 54 (116)
+.+.++.+.+|++|+|||++.|.||+|+++|+|++.+++..++..+|...+.
T Consensus 194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~ 245 (306)
T TIGR02056 194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAA 245 (306)
T ss_pred HHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999999999888877765553
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=98.94 E-value=1.6e-08 Score=80.36 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM 53 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i 53 (116)
.+..++++||.||.|||++.|++|+|+++|+|++.+++.....++.....
T Consensus 166 ~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~ 215 (279)
T PRK09573 166 STWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSP 215 (279)
T ss_pred HHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999998766555554443
No 22
>PLN00012 chlorophyll synthetase; Provisional
Probab=98.91 E-value=1.6e-08 Score=84.94 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM 53 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i 53 (116)
+.+..+.++||++|+|||++.|++|+|+++|++++++++..++.+.....+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~ 313 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA 313 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999876666655443
No 23
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.91 E-value=1.3e-08 Score=81.24 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=59.6
Q ss_pred HHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033565 6 FVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKK 85 (116)
Q Consensus 6 ~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~ 85 (116)
....++++++|.|+|++.|++|+|+++|++++.+++.......++..+..-...... ..-.++++.+..++++...
T Consensus 179 ~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~~~~~~l~~~~~~ 254 (285)
T PRK12847 179 IGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHN----IFYLAILAAAGIFYYQYKL 254 (285)
T ss_pred HHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHHHHHHHHH
Confidence 334488999999999999999999999999999998877666666544322221111 1112444455677778888
Q ss_pred ccCCChhhH
Q 033565 86 VDLDNFEST 94 (116)
Q Consensus 86 vdl~~k~ai 94 (116)
+|.+|+++.
T Consensus 255 ~~~~~~~~~ 263 (285)
T PRK12847 255 LDFDNPANC 263 (285)
T ss_pred hCCCCHHHH
Confidence 988876544
No 24
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=98.86 E-value=2.5e-08 Score=79.01 Aligned_cols=42 Identities=31% Similarity=0.512 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHH
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMM 45 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll 45 (116)
..+.+++.||++|+|||++.|++|+|+++|+|++.+++....
T Consensus 166 ~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 166 VNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred HHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 345677999999999999999999999999999999876653
No 25
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=98.85 E-value=5.7e-08 Score=79.79 Aligned_cols=108 Identities=15% Similarity=0.112 Sum_probs=65.8
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033565 7 VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKV 86 (116)
Q Consensus 7 ~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~v 86 (116)
+..++++.+|+|||++.|++|+|+++|++++.+++..+..++.+..+++|......+.-......-...+..+.+|.+.+
T Consensus 187 g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~~~~~ 266 (300)
T PRK12876 187 ANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKHYSLI 266 (300)
T ss_pred HHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999999998888777777777666667654332211111111112222234555666
Q ss_pred cCCChhhHHH-HHHHHHH--HHHHHHHhhhh
Q 033565 87 DLDNFESTFG-FYMLIWK--LNYVEYILIHF 114 (116)
Q Consensus 87 dl~~k~ai~~-fY~fIWk--LFy~EYll~P~ 114 (116)
|.++++.-.. |-+..|= ++++-.+.-|.
T Consensus 267 ~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~ 297 (300)
T PRK12876 267 DKKKSTLEQKFFLGNIYLALSFFVNMIGLFL 297 (300)
T ss_pred CCCchHHHHHHHHhcCHHHHHHHHHHHHHHc
Confidence 6655444444 4343443 33444443333
No 26
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=98.84 E-value=2.1e-08 Score=81.56 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM 53 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i 53 (116)
.+..+..++|++|+|||++.|++|+|+++|++++.++...++..+|+..+
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~ 250 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVI 250 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999999999999999888888888764
No 27
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=98.76 E-value=7e-08 Score=77.24 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
+....++++++|+|+|++.|++|+|+++|++++.+.+.......+.. .+.+.... .+.... .+=.+.+..+.++..
T Consensus 173 ~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~ 248 (281)
T TIGR01474 173 TLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL-ALAGLIAG--LGPVYY-LGLAAAALLLIRQIA 248 (281)
T ss_pred HHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH-HHHHHHhC--CcHHHH-HHHHHHHHHHHHHHH
Confidence 44556889999999999999999999999988765544444333333 33333221 122222 222234555556666
Q ss_pred hccCCChhhHHH
Q 033565 85 KVDLDNFESTFG 96 (116)
Q Consensus 85 ~vdl~~k~ai~~ 96 (116)
.+|.+++++..+
T Consensus 249 ~~~~~~~~~~~~ 260 (281)
T TIGR01474 249 TLDIRDPENCLK 260 (281)
T ss_pred HhCCCCHHHHHH
Confidence 777766655433
No 28
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=98.74 E-value=8.5e-08 Score=77.99 Aligned_cols=86 Identities=16% Similarity=0.102 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
+.....+||++|.|||++.|++|+|+++|++++.++...+..+.....+ +... ..+.......=.+.+..+.+|.+
T Consensus 188 ~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~~~~~~~~~~~ 263 (297)
T PRK12871 188 TMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAGFVLLAGANLY 263 (297)
T ss_pred HHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566799999999999999999999999999998776666555554433 3222 22222222222444555667777
Q ss_pred hccCCChhhH
Q 033565 85 KVDLDNFEST 94 (116)
Q Consensus 85 ~vdl~~k~ai 94 (116)
..+-+++++.
T Consensus 264 ~~~~~~~~~~ 273 (297)
T PRK12871 264 LWKEKSQDAG 273 (297)
T ss_pred HhcCCCHHHH
Confidence 7777777653
No 29
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.73 E-value=8.4e-08 Score=77.39 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
.....++++++|+|+|++.|++|+|+++|++++.+++.. ..++.......|.... .+.... .+=.+.+..+.++..
T Consensus 179 ~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~y~-~~~~~~~~~l~~~~~ 254 (290)
T PRK12870 179 TLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVGFLAILGVLLE--LHLPFW-IGLAIAAVLWARQYR 254 (290)
T ss_pred HHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHHHHHHHHHHhC--CcHHHH-HHHHHHHHHHHHHHH
Confidence 445568999999999999999999999999999887763 3333333333444321 111111 122244445566777
Q ss_pred hc--cCCChhh-HHHHHHHHHH
Q 033565 85 KV--DLDNFES-TFGFYMLIWK 103 (116)
Q Consensus 85 ~v--dl~~k~a-i~~fY~fIWk 103 (116)
.+ |..|+++ -+-|.+..|-
T Consensus 255 ~~~~~~~~~~~~~~~F~~n~~~ 276 (290)
T PRK12870 255 RLRQANLPPLAYGQLFLQNVWI 276 (290)
T ss_pred HhcccCCChHHHHHHHHHhhHH
Confidence 77 7777754 4666666654
No 30
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=98.66 E-value=2.3e-07 Score=74.97 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=53.9
Q ss_pred HHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033565 8 NGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVD 87 (116)
Q Consensus 8 iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vd 87 (116)
..++++++|.|+|++.|++|+|+++|++++.+++......++....+.+..... +....+ +=++....+.++.+.++
T Consensus 178 ~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~-~~~~~~~~~l~~~~~~~ 254 (291)
T PRK12886 178 FDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGL--GPWFLA-GLAVTGILLLYEHWLLR 254 (291)
T ss_pred HHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHH-HHHHHHHHHHHHHHHhC
Confidence 446899999999999999999999999999998877767777666555543321 111111 11123333335667777
Q ss_pred CCC
Q 033565 88 LDN 90 (116)
Q Consensus 88 l~~ 90 (116)
..|
T Consensus 255 ~~~ 257 (291)
T PRK12886 255 GGD 257 (291)
T ss_pred CCC
Confidence 666
No 31
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=98.65 E-value=5.6e-08 Score=78.69 Aligned_cols=54 Identities=22% Similarity=0.434 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISG 56 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g 56 (116)
+++.++.+++|++|+|+|++.|+||+|+++|+|++++++..+.+.+-...+.+|
T Consensus 176 l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 176 LWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999999998888777766666655
No 32
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=98.65 E-value=3.9e-07 Score=73.76 Aligned_cols=89 Identities=22% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSK 84 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~ 84 (116)
+....++++++|+|+|++.|++|+|+++|++++.+++......+.+.....|...... .....+-.+.+..++++-+
T Consensus 180 ~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 256 (291)
T PRK12874 180 VAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHY 256 (291)
T ss_pred HHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Confidence 3445579999999999999999999999999998877655554444444444332111 1222344455566777777
Q ss_pred hccCCChhhHHH
Q 033565 85 KVDLDNFESTFG 96 (116)
Q Consensus 85 ~vdl~~k~ai~~ 96 (116)
.++.+++++-..
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T PRK12874 257 LVRKDFKKIDKA 268 (291)
T ss_pred HhcCCChHHHHH
Confidence 776555554444
No 33
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=98.62 E-value=4.8e-07 Score=73.20 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHh
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGA 57 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~ 57 (116)
+.+..+...++++|+|+|++.|.+|+|+++|+|++.++-..+...+|+..+....
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~ 229 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFML 229 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999999999999999999987776544
No 34
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=98.61 E-value=3.1e-07 Score=73.46 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=55.4
Q ss_pred hcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCh
Q 033565 12 KDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNF 91 (116)
Q Consensus 12 KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k 91 (116)
-+++|.|+|++.|++|+|+++|.|++.+++..... ........+..... +.... .+=.+....+.++.+.+|.+++
T Consensus 182 ~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~y~-~~~~~~~~~~~~~~~~~~~~~~ 257 (282)
T PRK12848 182 YAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA-TLALLAWAGWLLGL--GWAYY-WGLLVAAALFVYQQKLIRDRER 257 (282)
T ss_pred HHhccHhhHHHcCCccccHHhccccHHHHHHHHHH-HHHHHHHHHHHhcC--cHHHH-HHHHHHHHHHHHHHHHcCCCCH
Confidence 34779999999999999999999998887754333 33333333432211 22211 2233455566677889998887
Q ss_pred hhH-HHHHHHHH
Q 033565 92 EST-FGFYMLIW 102 (116)
Q Consensus 92 ~ai-~~fY~fIW 102 (116)
++. ..|++..|
T Consensus 258 ~~~~~~F~~n~~ 269 (282)
T PRK12848 258 EACFKAFLNNNW 269 (282)
T ss_pred HHHHHHHHhCcH
Confidence 654 56665554
No 35
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=98.58 E-value=1.5e-07 Score=77.05 Aligned_cols=54 Identities=22% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS 58 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 58 (116)
...+.+.++++|+|+|++.|.+|+|+++|+|++.++-..+..++|+..+.....
T Consensus 202 ~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~ 255 (317)
T PRK13387 202 IANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLM 255 (317)
T ss_pred HHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344569999999999999999999999999999999999999999977654443
No 36
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=98.57 E-value=6e-07 Score=73.45 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033565 7 VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKV 86 (116)
Q Consensus 7 ~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~v 86 (116)
.-..+.+++|.|+|++.|++|+|+++|++++.++......... ...+.+......+--.+... .+...+.+|-.++
T Consensus 207 ~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 282 (314)
T PRK12878 207 GYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVL-LMGLAFWLAGVPLLALLGLL---AAAAHLAWQIARL 282 (314)
T ss_pred HHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHH---HHHHHHHHHHHHc
Confidence 3446789999999999999999999999999988855444443 33333322211111112222 2233466777888
Q ss_pred cCCChhhHHHHH
Q 033565 87 DLDNFESTFGFY 98 (116)
Q Consensus 87 dl~~k~ai~~fY 98 (116)
|.+++++-.+++
T Consensus 283 ~~~~~~~~~~~F 294 (314)
T PRK12878 283 DIDDPDQCLRLF 294 (314)
T ss_pred ccCChHHHHHHH
Confidence 887766543333
No 37
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.46 E-value=7.3e-07 Score=73.64 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHH
Q 033565 3 VFAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGG 51 (116)
Q Consensus 3 ~F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~ 51 (116)
+.+++.||.||+|| |||++. .+|+|+++|+|++.+++..+..++.+.
T Consensus 186 l~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 186 FPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence 45778899999999 899975 999999999999999999887766554
No 38
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=98.44 E-value=6.8e-07 Score=72.36 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS 58 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 58 (116)
.+..+-...+++|+|.|++.|.+|+|+++|+|++.++-..+...+|+..+..-..
T Consensus 173 ~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~ 227 (285)
T TIGR02235 173 ATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIG 227 (285)
T ss_pred HHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455668999999999999999999999999999999999999999987755443
No 39
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=98.42 E-value=8e-07 Score=72.74 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhh
Q 033565 4 FAFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGAS 58 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~ 58 (116)
.+..+-...+++|+|.|++.|.+|+|+++|+|++.++-..+...+|+..+.....
T Consensus 186 l~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~ 240 (304)
T PRK07419 186 ATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLL 240 (304)
T ss_pred HHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455568899999999999999999999999999999999999999988765544
No 40
>PLN02922 prenyltransferase
Probab=98.41 E-value=1.8e-06 Score=70.93 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565 5 AFVNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS 59 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 59 (116)
+..+-...+++|+|.|++.|.+|+|+++|+|++.++-..+...+|+..+...+..
T Consensus 201 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 255 (315)
T PLN02922 201 TTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLK 255 (315)
T ss_pred HHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455689999999999999999999999999999999999999999887665543
No 41
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.22 E-value=6.4e-06 Score=67.45 Aligned_cols=92 Identities=12% Similarity=-0.019 Sum_probs=64.2
Q ss_pred HHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033565 8 NGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVD 87 (116)
Q Consensus 8 iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vd 87 (116)
-.++++++|.|+|++.|++|+|+++|+ ++...+..+..++......+|..... +.... .+=++.+..+.+|.+.+|
T Consensus 186 ~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l--~~~y~-~~~~~~~~~l~~~~~~~~ 261 (294)
T PRK12873 186 FDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQV--GFIFW-PFWLIASIGMQRDILKLF 261 (294)
T ss_pred HHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCC--cHHHH-HHHHHHHHHHHHHHHHhC
Confidence 347899999999999999999999996 56666666666666666666765432 11222 233344566777888898
Q ss_pred CCC---hhhHHHHHHHHHH
Q 033565 88 LDN---FESTFGFYMLIWK 103 (116)
Q Consensus 88 l~~---k~ai~~fY~fIWk 103 (116)
.++ ++....|.+..|-
T Consensus 262 ~~~~~~~~c~~~F~~n~~~ 280 (294)
T PRK12873 262 PEKQSIKTIGNHFSNQVIL 280 (294)
T ss_pred cCcccHHHHHHHHHhccHH
Confidence 887 4455888887774
No 42
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=98.05 E-value=3e-05 Score=62.03 Aligned_cols=89 Identities=13% Similarity=-0.044 Sum_probs=49.0
Q ss_pred cCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCChh
Q 033565 13 DLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFE 92 (116)
Q Consensus 13 DieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k~ 92 (116)
+..|.|.|++.|++|+|+++|+|++.+++..+..+........+. . ..+....+..=...+..+..+.+.++-++++
T Consensus 180 ~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~--~~g~~y~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (279)
T PRK12869 180 ALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-Y--YIGLIGLILVAILSAALMATSIRALLNPTKE 256 (279)
T ss_pred HHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-h--hccHHHHHHHHHHHHHHHHHHHHHhhCCChH
Confidence 445788899999999999999999998876655444333333332 1 1122222222122233444544555544433
Q ss_pred -hHHHHHHHHHHH
Q 033565 93 -STFGFYMLIWKL 104 (116)
Q Consensus 93 -ai~~fY~fIWkL 104 (116)
+-+.|..-+|-+
T Consensus 257 ~~~~~f~~s~~~l 269 (279)
T PRK12869 257 EAWKMFKASSPYL 269 (279)
T ss_pred HHHHHHHHHHHHH
Confidence 334444444443
No 43
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=97.93 E-value=9.4e-05 Score=58.86 Aligned_cols=89 Identities=15% Similarity=0.040 Sum_probs=51.2
Q ss_pred CCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCC-Ch-
Q 033565 14 LPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLD-NF- 91 (116)
Q Consensus 14 ieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~-~k- 91 (116)
.+|.|.|++.|++|+|+++|.|++.+++............+.+.... .+....+.+=.+.+..++++.+.++.+ ++
T Consensus 180 ~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~ 257 (280)
T TIGR01473 180 LKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKFYRDPTDRK 257 (280)
T ss_pred HHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 57888999999999999999999988777655444444333333221 122222222233344455555666555 33
Q ss_pred hhHHHHHHHHHHH
Q 033565 92 ESTFGFYMLIWKL 104 (116)
Q Consensus 92 ~ai~~fY~fIWkL 104 (116)
.+-+.|..-.|-+
T Consensus 258 ~~~~~f~~s~~~~ 270 (280)
T TIGR01473 258 KARKLFKFSLIYL 270 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 2344555544443
No 44
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=97.78 E-value=0.00027 Score=57.01 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=28.6
Q ss_pred HhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHH
Q 033565 11 LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYG 50 (116)
Q Consensus 11 ~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~ 50 (116)
+||.|| |++.|++|+|+++|.+++.+++.....+.-.
T Consensus 189 ~~d~~D---~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~ 225 (296)
T PRK04375 189 IFRKDD---YAAAGIPMLPVVKGIRVTKRQILLYTVLLVA 225 (296)
T ss_pred HHHHhh---HHHcCCCccceeeCHHHHHHHHHHHHHHHHH
Confidence 566555 6999999999999999998877655444443
No 45
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=97.42 E-value=0.0021 Score=53.50 Aligned_cols=49 Identities=33% Similarity=0.400 Sum_probs=43.9
Q ss_pred HHHHHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHH
Q 033565 7 VNGLLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMIS 55 (116)
Q Consensus 7 ~iaI~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~ 55 (116)
.+-....+.|+|-|++.|-+|+|+++|++++..+-..++..+|+..++.
T Consensus 191 ~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~ 239 (303)
T COG1575 191 NILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIF 239 (303)
T ss_pred HHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHH
Confidence 3447889999999999999999999999999999999999999887753
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=96.80 E-value=0.011 Score=48.31 Aligned_cols=33 Identities=18% Similarity=0.006 Sum_probs=27.6
Q ss_pred HhcCCChhhhHhcCCccchhhHhHhhHHHHHHH
Q 033565 11 LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVN 43 (116)
Q Consensus 11 ~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ 43 (116)
.+.++|.|+|++.|++|+|++.|+|++.+.+..
T Consensus 189 ~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~ 221 (306)
T PRK13362 189 AIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVL 221 (306)
T ss_pred HHHHHhHhhHHHCCCeeeceecChHHHHHHHHH
Confidence 356777888899999999999999999885543
No 47
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=88.41 E-value=0.6 Score=38.83 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=43.2
Q ss_pred hcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 033565 12 KDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMI 63 (116)
Q Consensus 12 KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~ 63 (116)
..-.|.|.||+.||-|+++.+|+..+..+-..++..-|..-.+.|.-.+-++
T Consensus 249 nntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~ 300 (359)
T KOG4581|consen 249 NNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISF 300 (359)
T ss_pred CCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988888877788888988887777654443
No 48
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=87.25 E-value=1.3 Score=37.49 Aligned_cols=86 Identities=22% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCChhh
Q 033565 14 LPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILWLQSKKVDLDNFES 93 (116)
Q Consensus 14 ieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k~a 93 (116)
=+|-+-|-+-|+++=+.++|++.-.|+ .++-....+..-++|..+-..|. -... -+..+.=|-++-.+||++|+..
T Consensus 246 HQDK~dDvk~gvkSTALrfG~nTK~wl-~gf~a~~ia~La~aG~~s~q~~p-yy~~--lg~~~~~L~~~i~~vdiDnp~d 321 (353)
T KOG1381|consen 246 HQDKRDDVKIGVKSTALRFGDNTKPWL-SGFGAAQIASLAAAGIASDQTWP-YYAA--LGAVAARLGSQIYKVDIDNPSD 321 (353)
T ss_pred cccchhhhHhcchhhhhhcCCCCchHH-hhhhHHHHHHHHHhhhccCCCch-HHHH--HHHHHHHHHhheeeeecCChHH
Confidence 368888999999999999996655554 44555555555566777766552 2222 3345556778889999999665
Q ss_pred H-HHHHHHHHH
Q 033565 94 T-FGFYMLIWK 103 (116)
Q Consensus 94 i-~~fY~fIWk 103 (116)
. ..|=..+|-
T Consensus 322 C~k~f~sN~nt 332 (353)
T KOG1381|consen 322 CWKKFKSNSNT 332 (353)
T ss_pred HHHHHHhcCcc
Confidence 4 445445554
No 49
>PLN02776 prenyltransferase
Probab=80.55 E-value=28 Score=29.46 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=20.8
Q ss_pred hhhHhcCCccchhhH--hHhhHHHHHHHHHHHHH
Q 033565 18 EGDKKFGMKTLCVLL--GKEKVLPLCVNMMLVAY 49 (116)
Q Consensus 18 eGD~~~gi~Tlpv~l--G~~~~~~l~~~ll~~~y 49 (116)
|-|++-|++.+|+.- |++.+..+......+.-
T Consensus 177 dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~ 210 (341)
T PLN02776 177 DDYAAGGYRMLSLADATGRRTALVALRNCLYLAP 210 (341)
T ss_pred HHHHhCCCcccCccccchHHHHHHHHHHHHHHHH
Confidence 357799999999976 45555555544444433
No 50
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=74.35 E-value=23 Score=23.62 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=33.9
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 033565 33 GKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALI 78 (116)
Q Consensus 33 G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~ 78 (116)
|+|++-++...++.++...+.++|....+.-....+.++-.+++.+
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998776554444444444444444
No 51
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=54.64 E-value=68 Score=26.05 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=23.6
Q ss_pred HHHHhcCCChhhhHhcCCccchhhH---hHhhHHHHHHHHHH
Q 033565 8 NGLLKDLPDVEGDKKFGMKTLCVLL---GKEKVLPLCVNMML 46 (116)
Q Consensus 8 iaI~KDieDveGD~~~gi~Tlpv~l---G~~~~~~l~~~ll~ 46 (116)
..++.|.-|.|-|+..+ ++=|+.- .++.+..++..++.
T Consensus 70 ~n~~NDy~D~d~D~~~~-~~Rpi~~G~is~~~a~~~~~~l~~ 110 (306)
T TIGR02056 70 TQTINDFYDRDIDAINE-PYRPIPSGAISEPEVITQIVLLFI 110 (306)
T ss_pred HHHHHhHhhhhhhccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 35889999999998766 3444443 45555555444443
No 52
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=52.67 E-value=69 Score=25.48 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHhcCCChhhhHhcCC-ccchhhHh
Q 033565 9 GLLKDLPDVEGDKKFGM-KTLCVLLG 33 (116)
Q Consensus 9 aI~KDieDveGD~~~gi-~Tlpv~lG 33 (116)
-.+.|+.|.|=|+++.- +.=|+.-|
T Consensus 64 ~~iND~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 64 YVINDLADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HHHHHHhhhhccCCCCCccCCCCCCC
Confidence 38999999999998865 23444444
No 53
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=52.49 E-value=86 Score=24.59 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=25.5
Q ss_pred HHHHhcCCChhhhHhcCCccchhhHh---HhhHHHHHHHHH
Q 033565 8 NGLLKDLPDVEGDKKFGMKTLCVLLG---KEKVLPLCVNMM 45 (116)
Q Consensus 8 iaI~KDieDveGD~~~gi~Tlpv~lG---~~~~~~l~~~ll 45 (116)
..++.|..|.|=|++. -+.=|+.-| .+.+..++..+.
T Consensus 53 ~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~ 92 (279)
T PRK12884 53 ANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLF 92 (279)
T ss_pred HHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3489999999999988 366677666 444554444433
No 54
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=51.12 E-value=1.1e+02 Score=23.44 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=13.9
Q ss_pred hhHhHhhHHHHHHHHHHHHHHH
Q 033565 30 VLLGKEKVLPLCVNMMLVAYGG 51 (116)
Q Consensus 30 v~lG~~~~~~l~~~ll~~~y~~ 51 (116)
-++|+|++..++..+..++...
T Consensus 62 dr~g~r~~~~~~~~~~~i~~~~ 83 (366)
T TIGR00886 62 DKFGPRYTTTLSLLLLAIPCLW 83 (366)
T ss_pred HHhCchHHHHHHHHHHHHHHHH
Confidence 3678888877766655554433
No 55
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=46.69 E-value=23 Score=26.53 Aligned_cols=32 Identities=41% Similarity=0.488 Sum_probs=26.1
Q ss_pred HHHhcCCChhhhH----------hcCCccchhhHhHhhHHHH
Q 033565 9 GLLKDLPDVEGDK----------KFGMKTLCVLLGKEKVLPL 40 (116)
Q Consensus 9 aI~KDieDveGD~----------~~gi~Tlpv~lG~~~~~~l 40 (116)
-+..|+.|+.||. +.|-.|+|...+.+.....
T Consensus 163 Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~ 204 (236)
T cd00867 163 QLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEY 204 (236)
T ss_pred HHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHH
Confidence 3889999999988 8999999999995444444
No 56
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=46.21 E-value=1.3e+02 Score=22.99 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=11.4
Q ss_pred hccCCChhhHHHHHHHHHH
Q 033565 85 KVDLDNFESTFGFYMLIWK 103 (116)
Q Consensus 85 ~vdl~~k~ai~~fY~fIWk 103 (116)
+...++..+..+.|+...+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~ 333 (375)
T TIGR00899 315 DLMPGRAGAATTLYTNTGR 333 (375)
T ss_pred HhCcchhhHHHHHHHHHHH
Confidence 3334455567777777665
No 57
>PRK10133 L-fucose transporter; Provisional
Probab=45.54 E-value=1.8e+02 Score=24.17 Aligned_cols=77 Identities=8% Similarity=-0.039 Sum_probs=41.1
Q ss_pred chhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHHHhhccCCChh-hHHHHHHHHHH
Q 033565 28 LCVLLGKEKVLPLCVNMMLVAYGGAMISGASS---SFMINKIVSIIGHGILALILWLQSKKVDLDNFE-STFGFYMLIWK 103 (116)
Q Consensus 28 lpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~---~~~~~~~~~~~~H~~l~~~lw~r~~~vdl~~k~-ai~~fY~fIWk 103 (116)
+.-|+|+|++..++..+..++.+.....+... .....+.+...|++......-........+++. ...++++..|.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34577999998888777666654432222211 123345666777776655433222223223332 24677777765
Q ss_pred H
Q 033565 104 L 104 (116)
Q Consensus 104 L 104 (116)
+
T Consensus 164 ~ 164 (438)
T PRK10133 164 F 164 (438)
T ss_pred H
Confidence 3
No 58
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=44.54 E-value=1e+02 Score=25.17 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=17.9
Q ss_pred HhcCCChhhhHhcCCccchhhHhH
Q 033565 11 LKDLPDVEGDKKFGMKTLCVLLGK 34 (116)
Q Consensus 11 ~KDieDveGD~~~gi~Tlpv~lG~ 34 (116)
+.|..|.|-|+... ++-|+.=|+
T Consensus 72 iNd~~D~~iD~ink-p~rPiasG~ 94 (308)
T PRK12887 72 LNQLTDIEIDRINK-PHLPLAAGE 94 (308)
T ss_pred HhhhhhHHHHhcCC-CCCCcCCcc
Confidence 99999999999654 777765554
No 59
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=39.77 E-value=1.6e+02 Score=21.99 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=20.7
Q ss_pred HHHHHHhcCCChhhhHhc-CCccchhhHhHhh
Q 033565 6 FVNGLLKDLPDVEGDKKF-GMKTLCVLLGKEK 36 (116)
Q Consensus 6 ~~iaI~KDieDveGD~~~-gi~Tlpv~lG~~~ 36 (116)
.......|..|.|=|+.. +-+.-|+.-|+-+
T Consensus 37 ~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 37 LAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence 345588999999999995 3344455444433
No 60
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=38.49 E-value=1.7e+02 Score=23.08 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=24.2
Q ss_pred HHHhcCCChhhhHhcCCccchhhHh---HhhHHHHHHHHH
Q 033565 9 GLLKDLPDVEGDKKFGMKTLCVLLG---KEKVLPLCVNMM 45 (116)
Q Consensus 9 aI~KDieDveGD~~~gi~Tlpv~lG---~~~~~~l~~~ll 45 (116)
.++.|.-|.|-|++.. +.=|+.-| ++.+..++..+.
T Consensus 55 ~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~ 93 (276)
T PRK12882 55 NAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLF 93 (276)
T ss_pred HHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHH
Confidence 3899999999999755 66666665 444444444433
No 61
>PRK10581 geranyltranstransferase; Provisional
Probab=38.16 E-value=54 Score=26.72 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=29.6
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLV 47 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~ 47 (116)
|.-|+-|+.|| .+.|..|+|+.+|.+++...+--...-
T Consensus 221 I~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~ 269 (299)
T PRK10581 221 VQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDD 269 (299)
T ss_pred HHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88899888765 457999999999998888766554443
No 62
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=37.94 E-value=1.1e+02 Score=24.26 Aligned_cols=34 Identities=15% Similarity=-0.071 Sum_probs=21.3
Q ss_pred HHHhcCCChhhhHhcCCccchhhHh---HhhHHHHHHH
Q 033565 9 GLLKDLPDVEGDKKFGMKTLCVLLG---KEKVLPLCVN 43 (116)
Q Consensus 9 aI~KDieDveGD~~~gi~Tlpv~lG---~~~~~~l~~~ 43 (116)
.++.|.-|.|-|+..+ ++=|+.-| +|.+..+...
T Consensus 55 n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~ 91 (283)
T TIGR01476 55 QSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLV 91 (283)
T ss_pred HHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHH
Confidence 4889999999999765 44444333 4444444433
No 63
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=37.07 E-value=1.3e+02 Score=24.64 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHhcCCChhhhHhcC-Cccchhh---HhHhhHHHHHHHHHHHH
Q 033565 8 NGLLKDLPDVEGDKKFG-MKTLCVL---LGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 8 iaI~KDieDveGD~~~g-i~Tlpv~---lG~~~~~~l~~~ll~~~ 48 (116)
..++.|+-|.|=||++. -+.=|+. +.++.+..++..++.++
T Consensus 62 ~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~ 106 (295)
T PRK12324 62 VYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS 106 (295)
T ss_pred HHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHH
Confidence 44999999999999962 2222333 34444544444444433
No 64
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=35.10 E-value=2.5e+02 Score=22.83 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=35.2
Q ss_pred hhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHhhccCCChhhHHHHHHHHHH
Q 033565 30 VLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILW-LQSKKVDLDNFESTFGFYMLIWK 103 (116)
Q Consensus 30 v~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw-~r~~~vdl~~k~ai~~fY~fIWk 103 (116)
-++|+|++..++..+..++........-.......+.+...+++....... .-++..+.+.+....+.|+..+.
T Consensus 68 dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ 142 (412)
T TIGR02332 68 AIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMP 142 (412)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 377888887766655555444433221111223345566666665432221 11223333334445555555443
No 65
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=33.95 E-value=2e+02 Score=21.57 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=15.1
Q ss_pred hhhHhHhhHHHHHHHHHHHHHH
Q 033565 29 CVLLGKEKVLPLCVNMMLVAYG 50 (116)
Q Consensus 29 pv~lG~~~~~~l~~~ll~~~y~ 50 (116)
.=++|+|++..++..+..++..
T Consensus 62 ~d~~G~r~~~~~~~~~~~~~~~ 83 (377)
T TIGR00890 62 ADKFGPRAVAMLGGILYGLGFT 83 (377)
T ss_pred HHHcCccchhHHhHHHHHHHHH
Confidence 3468889888877766555543
No 66
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=33.32 E-value=2.5e+02 Score=22.46 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=29.7
Q ss_pred hhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 033565 30 VLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGIL 75 (116)
Q Consensus 30 v~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l 75 (116)
=++|+|++...+..+..++.+....+.-.......+.+...|++..
T Consensus 69 dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~ 114 (393)
T PRK09705 69 QHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGII 114 (393)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHH
Confidence 4689999999988887777665543322223344566666777654
No 67
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=33.04 E-value=1.3e+02 Score=18.92 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=11.9
Q ss_pred hHhHhhHHHHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYG 50 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~ 50 (116)
++|+|+...++..+..++..
T Consensus 24 ~~g~~~~~~~~~~~~~~~~~ 43 (141)
T TIGR00880 24 RFGRKPVLLVGLFIFVLSTA 43 (141)
T ss_pred hcchhHHHHHHHHHHHHHHH
Confidence 46777777666555444433
No 68
>PRK09848 glucuronide transporter; Provisional
Probab=32.75 E-value=2.7e+02 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=14.1
Q ss_pred hhHhHhhHHHHHHHHHHHHHHHHH
Q 033565 30 VLLGKEKVLPLCVNMMLVAYGGAM 53 (116)
Q Consensus 30 v~lG~~~~~~l~~~ll~~~y~~~i 53 (116)
-++|+|++..++..+..+++....
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHH
Confidence 356677777766655555554443
No 69
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=32.38 E-value=3.1e+02 Score=23.15 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.7
Q ss_pred HhcCCccchhhHhHhhHHHHHHHHH
Q 033565 21 KKFGMKTLCVLLGKEKVLPLCVNMM 45 (116)
Q Consensus 21 ~~~gi~Tlpv~lG~~~~~~l~~~ll 45 (116)
++-|+.-+|++-|++.+++-...-.
T Consensus 204 ~~AgiPMlPvv~G~~~t~~~I~~y~ 228 (304)
T COG0109 204 KAAGIPMLPVVKGERRTKRQILLYT 228 (304)
T ss_pred HHcCCCcccccccHHHHHHHHHHHH
Confidence 5789999999999999988765433
No 70
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=32.37 E-value=2.4e+02 Score=21.82 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=9.8
Q ss_pred hHhHhhHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLV 47 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~ 47 (116)
+.|+|++..++..+..+
T Consensus 256 r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 256 RVGALNMLRFGLWIQFI 272 (377)
T ss_pred HhCHHHHHHHHHHHHHH
Confidence 56677766665554333
No 71
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=31.45 E-value=2.5e+02 Score=21.89 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCChhhhHhcC
Q 033565 5 AFVNGLLKDLPDVEGDKKFG 24 (116)
Q Consensus 5 ~~~iaI~KDieDveGD~~~g 24 (116)
+.....+.|.-|.|-|+..+
T Consensus 49 ~~~~~~~N~~~D~~~D~~n~ 68 (285)
T PRK12872 49 AAAVYIINYLTDLEEDIINK 68 (285)
T ss_pred HHHHHHhhhhcCCchhhcCC
Confidence 34445889999999998654
No 72
>PRK12382 putative transporter; Provisional
Probab=30.52 E-value=2.7e+02 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=12.4
Q ss_pred hhccCCChhhHHHHHHHHHHH
Q 033565 84 KKVDLDNFESTFGFYMLIWKL 104 (116)
Q Consensus 84 ~~vdl~~k~ai~~fY~fIWkL 104 (116)
+..+.+++....+.++..+.+
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~ 349 (392)
T PRK12382 329 KRVPSQVRGTALGGYAAFQDI 349 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHH
Confidence 334445566677777766554
No 73
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=30.01 E-value=1.7e+02 Score=23.18 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=24.4
Q ss_pred HHHhcCCChhhhHhcCCccchhhHh---HhhHHHHHHHHHHH
Q 033565 9 GLLKDLPDVEGDKKFGMKTLCVLLG---KEKVLPLCVNMMLV 47 (116)
Q Consensus 9 aI~KDieDveGD~~~gi~Tlpv~lG---~~~~~~l~~~ll~~ 47 (116)
.++.|.-|.|-|++.. +.=|+.-| ++.+..++..+..+
T Consensus 54 ~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~ 94 (279)
T PRK09573 54 NVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIV 94 (279)
T ss_pred HHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence 4899999999999764 55555444 45555554444333
No 74
>TIGR00895 2A0115 benzoate transport.
Probab=29.98 E-value=2.2e+02 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=12.3
Q ss_pred hHhHhhHHHHHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYGG 51 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~~ 51 (116)
++|+|++..++..+..++...
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 78 RIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 567777766666555444433
No 75
>TIGR00901 2A0125 AmpG-related permease.
Probab=29.39 E-value=2.7e+02 Score=21.51 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=14.5
Q ss_pred HHHhhccCCChhhHHHHHHHHHH
Q 033565 81 LQSKKVDLDNFESTFGFYMLIWK 103 (116)
Q Consensus 81 ~r~~~vdl~~k~ai~~fY~fIWk 103 (116)
.-++..|.+.+.+..++++....
T Consensus 333 ~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 333 FLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHhcCCCccHHHHHHHHHHHh
Confidence 34556676777777777765543
No 76
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=28.20 E-value=3e+02 Score=21.65 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=12.9
Q ss_pred hHhHhhHHHHHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYGG 51 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~~ 51 (116)
++|+|+...++..+..++...
T Consensus 64 r~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 64 RSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HhCChHHHHHHHHHHHHHHHH
Confidence 578887777666555444433
No 77
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.99 E-value=2.3e+02 Score=20.33 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=28.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 033565 33 GKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGI 74 (116)
Q Consensus 33 G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~ 74 (116)
|++++-+.--..++++-+++.+.|+...+.-.....+++-++
T Consensus 20 gQkkaEr~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v 61 (101)
T KOG4112|consen 20 GQKKAERFQQLILTIGAIVGFIYGFAQQQLSVTVYIVGAGFV 61 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888876544333333333333
No 78
>KOG3012 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=3.6e+02 Score=22.34 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-HHHH-----HHHHHHHHHHHhhccCCCh--------------hhHHHHHHHHHHH
Q 033565 45 MLVAYGGAMISGASSSFMINKIVS-IIGH-----GILALILWLQSKKVDLDNF--------------ESTFGFYMLIWKL 104 (116)
Q Consensus 45 l~~~y~~~i~~g~~~~~~~~~~~~-~~~H-----~~l~~~lw~r~~~vdl~~k--------------~ai~~fY~fIWkL 104 (116)
...+.+.++..+.+....+.-++. +.-| .+.|.++|+-+++--.++| --.-||+--.=-|
T Consensus 93 ~vssi~~a~~~~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~Nryl~k~~~s~d~~vEW~YcFDVHcNsFfp~lvlL 172 (259)
T KOG3012|consen 93 VVSSIGWAYVLDLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISNRYLRKRKSSRDYDVEWGYCFDVHCNSFFPMLVLL 172 (259)
T ss_pred HHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccccceeeeeeeeehhhhhHHHHHHH
Confidence 334455566666665554444332 3333 3567778865544333221 1367888777779
Q ss_pred HHHHHHhhhhc
Q 033565 105 NYVEYILIHFL 115 (116)
Q Consensus 105 Fy~EYll~P~~ 115 (116)
.+.+++++|++
T Consensus 173 yvIq~fl~plI 183 (259)
T KOG3012|consen 173 YVIQLFLLPLI 183 (259)
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 79
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=26.48 E-value=1.1e+02 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.060 Sum_probs=23.6
Q ss_pred HHHhcCCChhhhHhcCCccchhh---HhHhhHHHHHHHHHHH
Q 033565 9 GLLKDLPDVEGDKKFGMKTLCVL---LGKEKVLPLCVNMMLV 47 (116)
Q Consensus 9 aI~KDieDveGD~~~gi~Tlpv~---lG~~~~~~l~~~ll~~ 47 (116)
.++.|.-|.|-|++.+ ++=|+. +.++.+..++..++.+
T Consensus 82 ~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~ 122 (314)
T PRK07566 82 QTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVL 122 (314)
T ss_pred HHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHH
Confidence 4889999999998754 444443 3445555554444333
No 80
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=26.48 E-value=2.5e+02 Score=23.35 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHhcCCChhhhHhcCCccchhhHh---HhhHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGDKKFGMKTLCVLLG---KEKVLPLCVNMMLVAY 49 (116)
Q Consensus 10 I~KDieDveGD~~~gi~Tlpv~lG---~~~~~~l~~~ll~~~y 49 (116)
++.|.-|.|=|+..+ +|=|+.-| +|.+..++..+..++.
T Consensus 68 ~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~ 109 (331)
T PRK12392 68 SVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAI 109 (331)
T ss_pred HHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHH
Confidence 799999999998654 55555444 5556665555544443
No 81
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins []. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
Probab=25.55 E-value=84 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChhhHHHHH--------HHHHHH
Q 033565 66 IVSIIGHGILALILWLQSKKVDLDNFESTFGFY--------MLIWKL 104 (116)
Q Consensus 66 ~~~~~~H~~l~~~lw~r~~~vdl~~k~ai~~fY--------~fIWkL 104 (116)
.++.+-|=+ ++.||.|++.-.....++...|| +-+||.
T Consensus 147 ~i~~iKqRl-LsfLyr~~~~~~~~~~~~~r~Fy~~F~~~~~L~MWKm 192 (407)
T PF09737_consen 147 FINGIKQRL-LSFLYRRAWRESSDPADRLRRFYFNFDQYRSLRMWKM 192 (407)
T ss_pred cccchhHHh-HHHHHhhhhhcCCcchhhHHHHHHHHHHHHHHHhhhh
Confidence 344555544 46678888876666667779998 458885
No 82
>PLN00012 chlorophyll synthetase; Provisional
Probab=25.02 E-value=3.3e+02 Score=23.21 Aligned_cols=24 Identities=21% Similarity=-0.000 Sum_probs=18.2
Q ss_pred HHHhcCCChhhhHhcCCccchhhHh
Q 033565 9 GLLKDLPDVEGDKKFGMKTLCVLLG 33 (116)
Q Consensus 9 aI~KDieDveGD~~~gi~Tlpv~lG 33 (116)
.++.|.-|.|-|+..+ ++=|+.=|
T Consensus 140 n~iNDy~D~~iD~~~~-~~Rpi~sG 163 (375)
T PLN00012 140 QTINDWYDREIDAINE-PYRPIPSG 163 (375)
T ss_pred HHHHCeecHhhhccCC-CCCCcCCC
Confidence 4799999999998876 44555445
No 83
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=25.00 E-value=3.3e+02 Score=21.37 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHHHHHHHH-HhhccCCChhhHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYGGAMISGASSS--------FMINKIVSIIGHGILALILWLQ-SKKVDLDNFESTFGFYMLI 101 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~--------~~~~~~~~~~~H~~l~~~lw~r-~~~vdl~~k~ai~~fY~fI 101 (116)
|+|+||+..++..+..++.......+...+ ....+.+...+.+......-.- .+.++-+++....+.++.-
T Consensus 77 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 156 (399)
T PRK05122 77 TLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA 156 (399)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhh
Q ss_pred HHH
Q 033565 102 WKL 104 (116)
Q Consensus 102 WkL 104 (116)
+.+
T Consensus 157 ~~~ 159 (399)
T PRK05122 157 TYG 159 (399)
T ss_pred hhH
No 84
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=24.85 E-value=97 Score=24.06 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=36.8
Q ss_pred hhhHhHhhHHHHHHH-----HHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHhhccCC
Q 033565 29 CVLLGKEKVLPLCVN-----MMLVAYGGAMISGASSSFMINK-IVSIIGHGILALILWLQSKKVDLD 89 (116)
Q Consensus 29 pv~lG~~~~~~l~~~-----ll~~~y~~~i~~g~~~~~~~~~-~~~~~~H~~l~~~lw~r~~~vdl~ 89 (116)
|.++|.+...||..+ -..++-++.++.++..+...+- ..-.++-.++...+..-+++-|+-
T Consensus 39 P~~LGdetaRwI~VGNcLHKTAVlsGl~~l~~~~~~~~~~~~~~~p~g~lSv~ca~lY~vsWq~DPC 105 (165)
T PF14972_consen 39 PTRLGDETARWIAVGNCLHKTAVLSGLASLITGLLWPDRPNYISLPLGGLSVACAGLYTVSWQFDPC 105 (165)
T ss_pred CccccHHHHHHHHhhhhHhHHHHHhhhHHHHhhhhcccccceeeecHHHHHHHHHHHHhcccccCCC
Confidence 789999999999876 2234444455555554433321 223455556666666667777764
No 85
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.57 E-value=42 Score=33.08 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=31.9
Q ss_pred HhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHH
Q 033565 11 LKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLV 47 (116)
Q Consensus 11 ~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~ 47 (116)
-|||||+.|=-..+++|+-++.-+...--++..++++
T Consensus 834 rKdIEdV~gY~rsqVqt~vTKvSRGFshdLA~~ILm~ 870 (1301)
T PF05788_consen 834 RKDIEDVQGYMRSQVQTFVTKVSRGFSHDLAHRILMF 870 (1301)
T ss_pred cccchhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 4999999999999999999999888888887766554
No 86
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=24.01 E-value=47 Score=28.44 Aligned_cols=21 Identities=10% Similarity=0.275 Sum_probs=17.2
Q ss_pred ccCCChhhHHHHHHHHHHHHH
Q 033565 86 VDLDNFESTFGFYMLIWKLNY 106 (116)
Q Consensus 86 vdl~~k~ai~~fY~fIWkLFy 106 (116)
+|.++|+.+..+|++||-.|.
T Consensus 125 ls~e~kt~iNywFRHiwE~~~ 145 (385)
T PF04165_consen 125 LSPEEKTFINYWFRHIWEFFW 145 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 566678889999999998763
No 87
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=23.95 E-value=3.1e+02 Score=20.50 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=13.8
Q ss_pred hHhHhhHHHHHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYGG 51 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~~ 51 (116)
++|+|++..++..+..++...
T Consensus 60 r~g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 60 RYDRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred hhchhHHHHHHHHHHHHHHHH
Confidence 678888877776655444433
No 88
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=23.90 E-value=3.7e+02 Score=21.29 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=31.3
Q ss_pred CChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 033565 15 PDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASS 59 (116)
Q Consensus 15 eDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 59 (116)
++.+||+..+--.-|.-+|=+++-.+......+.-+.++..|.-+
T Consensus 84 ~~~~~~~~~~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa 128 (211)
T PF07062_consen 84 DNCDGNSNVGESETHCFFGWHKAVLILISFSMLFALLSICFGICA 128 (211)
T ss_pred hhcccCCcccccccceehhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445578888888888889988877776666666555556565544
No 89
>PRK15011 sugar efflux transporter B; Provisional
Probab=22.83 E-value=3.9e+02 Score=21.24 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=11.2
Q ss_pred ccCCChhhHHHHHHHHHHH
Q 033565 86 VDLDNFESTFGFYMLIWKL 104 (116)
Q Consensus 86 vdl~~k~ai~~fY~fIWkL 104 (116)
...+++....++|+.+.++
T Consensus 333 ~~p~~~g~~~~~~~~~~~l 351 (393)
T PRK15011 333 LMPGQAGSATTLYTNTSRV 351 (393)
T ss_pred hCCCCcchHHHHHHHHHHH
Confidence 3345566667777766543
No 90
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=22.77 E-value=77 Score=20.28 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=18.2
Q ss_pred hHHHHHHHHH---HHHHHHHHhhhhcC
Q 033565 93 STFGFYMLIW---KLNYVEYILIHFLR 116 (116)
Q Consensus 93 ai~~fY~fIW---kLFy~EYll~P~~~ 116 (116)
..--||..+| .-+-.||++-|++|
T Consensus 30 ~fV~fy~i~~t~lRa~~m~yvl~Plar 56 (65)
T PF08390_consen 30 YFVFFYIIVFTFLRAFLMEYVLDPLAR 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766 46789999999875
No 91
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=22.76 E-value=1.5e+02 Score=26.20 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=43.0
Q ss_pred cchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHH-HHhhccCC
Q 033565 27 TLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSF--MINKIVSIIGHGILALILWL-QSKKVDLD 89 (116)
Q Consensus 27 Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~--~~~~~~~~~~H~~l~~~lw~-r~~~vdl~ 89 (116)
-+..++|+|+++.++..+..+++++....+..+.. ....++-..|+.+.-.+.|- -+.-+|..
T Consensus 294 ~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyg 359 (467)
T COG2211 294 RLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG 359 (467)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHH
Confidence 35678999999999999999999999988833221 22224445677777777773 33445554
No 92
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=22.69 E-value=3.6e+02 Score=20.68 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=11.8
Q ss_pred hHhHhhHHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~ 48 (116)
++|+|++..++..+..++
T Consensus 73 r~g~r~~~~~~~~~~~~~ 90 (405)
T TIGR00891 73 RYGRRLPMVTSIVLFSAG 90 (405)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 568888877766554444
No 93
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=22.63 E-value=1.2e+02 Score=24.11 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=22.2
Q ss_pred HHHHHhcCCChhhhHhc---CCccchh-hHhHhhHHHHHH
Q 033565 7 VNGLLKDLPDVEGDKKF---GMKTLCV-LLGKEKVLPLCV 42 (116)
Q Consensus 7 ~iaI~KDieDveGD~~~---gi~Tlpv-~lG~~~~~~l~~ 42 (116)
+-.++.|.-|.|-|++. .-|.+|- ++.++.+..++.
T Consensus 51 a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 51 AAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred HHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 33489999999999986 2344433 344455554443
No 94
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=22.53 E-value=3.3e+02 Score=20.27 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=20.0
Q ss_pred ccCCChhhHHHHHHH-------------HHHHHHHHHHhhhh
Q 033565 86 VDLDNFESTFGFYML-------------IWKLNYVEYILIHF 114 (116)
Q Consensus 86 vdl~~k~ai~~fY~f-------------IWkLFy~EYll~P~ 114 (116)
.||+.+..+++++.- +++-|+.=|+++|.
T Consensus 84 ~DL~~~G~l~ey~~Diiylt~~vq~l~~~s~~~w~l~LvIP~ 125 (170)
T PF05620_consen 84 EDLNQPGGLTEYMFDIIYLTWFVQVLSIISNKFWWLYLVIPG 125 (170)
T ss_pred ccccCCcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777778887762 35555666888885
No 95
>TIGR00898 2A0119 cation transport protein.
Probab=22.05 E-value=3.9e+02 Score=21.88 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=12.6
Q ss_pred hhhHhHhhHHHHHHHHHHHH
Q 033565 29 CVLLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 29 pv~lG~~~~~~l~~~ll~~~ 48 (116)
+=++|+|++..++..+..++
T Consensus 151 ~Dr~Grr~~~~~~~~~~~i~ 170 (505)
T TIGR00898 151 SDRFGRKKVLLLSTLVTAVS 170 (505)
T ss_pred hhhccchHHHHHHHHHHHHH
Confidence 34678888877766544443
No 96
>TIGR00893 2A0114 d-galactonate transporter.
Probab=21.48 E-value=3.5e+02 Score=20.19 Aligned_cols=19 Identities=21% Similarity=0.196 Sum_probs=10.9
Q ss_pred hhHhHhhHHHHHHHHHHHH
Q 033565 30 VLLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 30 v~lG~~~~~~l~~~ll~~~ 48 (116)
-++|+|++..++..+..++
T Consensus 54 d~~g~r~~~~~~~~~~~~~ 72 (399)
T TIGR00893 54 DRFGARKTLAVFIVIWGVF 72 (399)
T ss_pred HhcCcceeeHHHHHHHHHH
Confidence 3567777766655444333
No 97
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=21.20 E-value=2.2e+02 Score=17.78 Aligned_cols=43 Identities=19% Similarity=0.023 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 033565 35 EKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALIL 79 (116)
Q Consensus 35 ~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l 79 (116)
+++|..+...+..+.+... -...+..+-+++.+..=++....+
T Consensus 26 ~k~K~~a~~~m~~~~~~s~--~~~~~~~~~~~~l~~~~~~~~~~i 68 (71)
T PF04304_consen 26 RKAKIRALLMMWLSMGISA--FFFVPNLWVRIVLAAILLIVAIYI 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHccHHHHHHHHHHHHHHHHHHh
Confidence 5566666665555544442 223345556655544433333333
Done!