Query 033565
Match_columns 116
No_of_seqs 200 out of 363
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 48.9 17 0.00059 28.5 3.9 40 10-49 214-264 (297)
2 2j1p_A Geranylgeranyl pyrophos 42.7 8.1 0.00028 30.1 1.1 32 10-44 231-262 (293)
3 3ts7_A Geranyltranstransferase 40.9 14 0.00049 29.5 2.3 41 10-50 227-278 (324)
4 3lsn_A Geranyltranstransferase 40.7 16 0.00055 28.7 2.6 41 10-50 221-272 (304)
5 4f62_A Geranyltranstransferase 39.6 9.8 0.00034 30.3 1.2 40 10-49 220-270 (317)
6 3llw_A Geranyltranstransferase 39.6 21 0.00072 28.2 3.1 41 10-50 228-277 (311)
7 4gnt_B Carbohydrate-responsive 37.8 16 0.00054 19.3 1.4 12 99-110 8-19 (26)
8 3lom_A Geranyltranstransferase 36.3 16 0.00054 29.0 1.9 40 10-49 228-278 (313)
9 3p8r_A Geranyltranstransferase 35.8 20 0.00068 28.2 2.4 39 10-48 227-276 (302)
10 3pde_A Farnesyl-diphosphate sy 35.8 24 0.00082 28.0 2.9 43 10-52 223-276 (309)
11 2h8o_A Geranyltranstransferase 35.5 18 0.00062 28.9 2.2 39 10-48 260-309 (335)
12 1rqj_A Geranyltranstransferase 34.6 21 0.00073 27.7 2.4 39 10-48 221-270 (299)
13 1pw4_A Glycerol-3-phosphate tr 34.0 1.4E+02 0.0049 22.1 8.3 74 31-104 88-166 (451)
14 2hdi_B Colicin-IA; outer membr 33.4 13 0.00044 25.6 0.8 9 14-22 84-92 (113)
15 3p8l_A Geranyltranstransferase 33.0 21 0.0007 28.2 2.1 40 10-49 224-274 (302)
16 3kra_B Geranyl diphosphate syn 33.0 30 0.001 26.7 3.0 43 10-52 78-120 (274)
17 3o7q_A L-fucose-proton symport 32.9 1.5E+02 0.0051 21.9 9.2 76 29-104 85-164 (438)
18 1rtr_A Geranyltranstransferase 32.7 25 0.00086 27.5 2.5 39 10-48 216-265 (301)
19 2gfp_A EMRD, multidrug resista 30.1 1.6E+02 0.0054 21.4 7.0 23 31-53 61-83 (375)
20 3npk_A Geranyltranstransferase 25.4 44 0.0015 26.1 2.7 49 4-52 207-264 (291)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=48.91 E-value=17 Score=28.48 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=24.9
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVAY 49 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y 49 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--+..-+.
T Consensus 214 I~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 264 (297)
T 3m0g_A 214 IADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 264 (297)
T ss_dssp HHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999885 46789999999999999888776555443
No 2
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=42.67 E-value=8.1 Score=30.13 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHH
Q 033565 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNM 44 (116)
Q Consensus 10 I~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~l 44 (116)
|..|+-|+.||. ..|+|+.+|.+++...+--.
T Consensus 231 I~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 231 VVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 889999999998 78999999999888876654
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=40.90 E-value=14 Score=29.46 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHhcCCChhh-----------hHhcCCccchhhHhHhhHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEG-----------DKKFGMKTLCVLLGKEKVLPLCVNMMLVAYG 50 (116)
Q Consensus 10 I~KDieDveG-----------D~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~ 50 (116)
|.-|+-|+.| |...|..|+|+.+|.+++...+--...-+.-
T Consensus 227 I~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~ 278 (324)
T 3ts7_A 227 IQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALE 278 (324)
T ss_dssp HHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888877 4568999999999999999887766555443
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=40.69 E-value=16 Score=28.74 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVAYG 50 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~ 50 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--+..-+.-
T Consensus 221 I~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~ 272 (304)
T 3lsn_A 221 VQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH 272 (304)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889888875 467899999999999998887766555443
No 5
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=39.64 E-value=9.8 Score=30.32 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVAY 49 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y 49 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--...-+-
T Consensus 220 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 270 (317)
T 4f62_A 220 VQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAI 270 (317)
T ss_dssp HHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888765 46799999999999999988876554443
No 6
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=39.56 E-value=21 Score=28.23 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred HHhcCCChhhhH---------hcCCccchhhHhHhhHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGDK---------KFGMKTLCVLLGKEKVLPLCVNMMLVAYG 50 (116)
Q Consensus 10 I~KDieDveGD~---------~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~ 50 (116)
|.-|+-|+.||. ..|-.|+|+.+|.+++....--++--+.-
T Consensus 228 I~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~ 277 (311)
T 3llw_A 228 VLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLN 277 (311)
T ss_dssp HHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888898988775 57999999999999998877766555443
No 7
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=37.77 E-value=16 Score=19.31 Aligned_cols=12 Identities=33% Similarity=1.005 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 033565 99 MLIWKLNYVEYI 110 (116)
Q Consensus 99 ~fIWkLFy~EYl 110 (116)
.-||+..|.+|+
T Consensus 8 naiwrawyiqyv 19 (26)
T 4gnt_B 8 NAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH
Confidence 358999999996
No 8
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=36.35 E-value=16 Score=28.99 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=28.7
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVAY 49 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y 49 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--+..-+.
T Consensus 228 I~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~ 278 (313)
T 3lom_A 228 MQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAM 278 (313)
T ss_dssp HHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888775 46899999999999999888776555443
No 9
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=35.84 E-value=20 Score=28.16 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~ 48 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--...-+
T Consensus 227 I~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 227 VQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 77788777665 4679999999999998888776554433
No 10
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=35.81 E-value=24 Score=27.95 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=33.5
Q ss_pred HHhcCCChhh-----------hHhcCCccchhhHhHhhHHHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEG-----------DKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGA 52 (116)
Q Consensus 10 I~KDieDveG-----------D~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~ 52 (116)
|.-|+-|+.| |...|..|+|+.+|.+++....--++.-|+...
T Consensus 223 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l 276 (309)
T 3pde_A 223 IYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAAL 276 (309)
T ss_dssp HHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7788888866 556789999999999999888777766665543
No 11
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=35.54 E-value=18 Score=28.88 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=25.6
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~ 48 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--...-+
T Consensus 260 I~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 260 LADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 77888887765 4578999999999888877766544433
No 12
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=34.61 E-value=21 Score=27.74 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=28.8
Q ss_pred HHhcCCChhhhH-----------hcCCccchhhHhHhhHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGDK-----------KFGMKTLCVLLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 10 I~KDieDveGD~-----------~~gi~Tlpv~lG~~~~~~l~~~ll~~~ 48 (116)
|.-|+-|+.||. ..|..|+|+.+|.+++...+--..--+
T Consensus 221 i~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A 270 (299)
T 1rqj_A 221 VQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDA 270 (299)
T ss_dssp HHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 778888877654 568999999999988766655444333
No 13
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=34.02 E-value=1.4e+02 Score=22.06 Aligned_cols=74 Identities=4% Similarity=-0.157 Sum_probs=35.3
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHH-HHHHHhhccCCChhhHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYGGAMI----SGASSSFMINKIVSIIGHGILALI-LWLQSKKVDLDNFESTFGFYMLIWKL 104 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~~~i~----~g~~~~~~~~~~~~~~~H~~l~~~-lw~r~~~vdl~~k~ai~~fY~fIWkL 104 (116)
++|+|++..++..+..++...... ..-.........+...+.+..... .-.-++..+.+++....+.++..+.+
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 678888887777766655544433 111111223344444444432221 11223344444455556666655543
No 14
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=33.42 E-value=13 Score=25.57 Aligned_cols=9 Identities=78% Similarity=1.021 Sum_probs=7.6
Q ss_pred CCChhhhHh
Q 033565 14 LPDVEGDKK 22 (116)
Q Consensus 14 ieDveGD~~ 22 (116)
-||+|||++
T Consensus 84 tedvegdkk 92 (113)
T 2hdi_B 84 TEDVEGDKK 92 (113)
T ss_dssp SSCHHHHHH
T ss_pred ecccccchh
Confidence 489999986
No 15
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=32.99 E-value=21 Score=28.16 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=26.8
Q ss_pred HHhcCCChhh-----------hHhcCCccchhhHhHhhHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEG-----------DKKFGMKTLCVLLGKEKVLPLCVNMMLVAY 49 (116)
Q Consensus 10 I~KDieDveG-----------D~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y 49 (116)
|.-|+-|+.| |...|..|+|+.+|.+++...+--+..-|-
T Consensus 224 I~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 224 IRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777765 567799999999999999988776555443
No 16
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=32.97 E-value=30 Score=26.70 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=33.9
Q ss_pred HHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGA 52 (116)
Q Consensus 10 I~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~ 52 (116)
|-.|+++.+.|...|..|.-.++|...+...+-.++..++-.+
T Consensus 78 IHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l 120 (274)
T 3kra_B 78 VHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELL 120 (274)
T ss_dssp HHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 7789995555667999999999999988777777777666533
No 17
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=32.94 E-value=1.5e+02 Score=21.93 Aligned_cols=76 Identities=7% Similarity=-0.076 Sum_probs=40.0
Q ss_pred hhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHH-HHHHHHhhccCCChhhHHHHHHHHHHH
Q 033565 29 CVLLGKEKVLPLCVNMMLVAYGGAMISGASSS---FMINKIVSIIGHGILAL-ILWLQSKKVDLDNFESTFGFYMLIWKL 104 (116)
Q Consensus 29 pv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~---~~~~~~~~~~~H~~l~~-~lw~r~~~vdl~~k~ai~~fY~fIWkL 104 (116)
.=++|+|++..++..+..++.......+...+ ....+.+...|.+.... ..-.-++..+.+++....+.++..+.+
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 34679999988888777766665543333221 12233444444433322 122234444555555556677766554
No 18
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=32.66 E-value=25 Score=27.46 Aligned_cols=39 Identities=28% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHhcCCChhhh-----------HhcCCccchhhHhHhhHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-----------KKFGMKTLCVLLGKEKVLPLCVNMMLVA 48 (116)
Q Consensus 10 I~KDieDveGD-----------~~~gi~Tlpv~lG~~~~~~l~~~ll~~~ 48 (116)
|.-|+-|+.|| ...|..|+|+.+|.+++...+--...-+
T Consensus 216 I~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A 265 (301)
T 1rtr_A 216 IKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 265 (301)
T ss_dssp HHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888775 4568999999999988877766544443
No 19
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=30.06 E-value=1.6e+02 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=14.3
Q ss_pred hHhHhhHHHHHHHHHHHHHHHHH
Q 033565 31 LLGKEKVLPLCVNMMLVAYGGAM 53 (116)
Q Consensus 31 ~lG~~~~~~l~~~ll~~~y~~~i 53 (116)
|+|+|++..++..+..++.....
T Consensus 61 r~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 61 RVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp TSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHHHHHHH
Confidence 56778877776666555544433
No 20
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=25.35 E-value=44 Score=26.08 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChhhhHh---------cCCccchhhHhHhhHHHHHHHHHHHHHHHH
Q 033565 4 FAFVNGLLKDLPDVEGDKK---------FGMKTLCVLLGKEKVLPLCVNMMLVAYGGA 52 (116)
Q Consensus 4 F~~~iaI~KDieDveGD~~---------~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~ 52 (116)
+..+--|.-|+-|+.||.. .|-.|+|+.+|.+++..-.--++.-+.-..
T Consensus 207 lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l 264 (291)
T 3npk_A 207 LGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQDL 264 (291)
T ss_dssp HHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHHHHH
Done!