Query 033565
Match_columns 116
No_of_seqs 200 out of 363
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 05:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 50.7 38 0.0028 24.1 8.0 44 10-53 82-126 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 33.5 7 0.00051 28.2 1.3 30 10-39 215-255 (290)
3 d1rqja_ a.128.1.1 (A:) Farnesy 30.8 7.4 0.00054 28.2 1.0 32 10-41 221-263 (299)
4 d1sr9a1 a.5.7.1 (A:437-491) 2- 30.1 10 0.00076 21.7 1.4 12 99-110 42-53 (55)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 28.0 82 0.006 21.2 7.1 76 29-104 83-163 (447)
6 d1v4ea_ a.128.1.1 (A:) Octopre 24.5 96 0.007 21.6 6.4 68 10-80 71-138 (280)
7 d1rtra_ a.128.1.1 (A:) Farnesy 22.0 1.2E+02 0.0088 21.1 7.2 43 10-52 79-122 (290)
8 d2j3wa1 d.110.4.3 (A:1-140) Se 14.3 75 0.0055 20.4 3.4 27 88-115 89-115 (140)
9 d1b24a2 d.95.2.1 (A:100-179) D 14.3 8.4 0.00061 23.8 -1.5 17 7-23 7-23 (80)
10 d1wvia_ c.108.1.14 (A:) Putati 10.5 34 0.0025 22.9 0.6 24 11-34 203-228 (253)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=50.65 E-value=38 Score=24.07 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHhcCCChhh-hHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEG-DKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAM 53 (116)
Q Consensus 10 I~KDieDveG-D~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i 53 (116)
|--|++|... |..+|..|.-.++|...+...+-.++..++-.+.
T Consensus 82 iHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 82 IHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 6679999887 4799999999999999988888877777666554
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=33.47 E-value=7 Score=28.19 Aligned_cols=30 Identities=33% Similarity=0.374 Sum_probs=19.4
Q ss_pred HHhcCCChhh-----------hHhcCCccchhhHhHhhHHH
Q 033565 10 LLKDLPDVEG-----------DKKFGMKTLCVLLGKEKVLP 39 (116)
Q Consensus 10 I~KDieDveG-----------D~~~gi~Tlpv~lG~~~~~~ 39 (116)
|.-|+.|+.| |-+.|..|+|+.+|.+++..
T Consensus 215 i~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 215 IKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 7788888765 45678999999999887544
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=30.78 E-value=7.4 Score=28.16 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=25.0
Q ss_pred HHhcCCChhh-----------hHhcCCccchhhHhHhhHHHHH
Q 033565 10 LLKDLPDVEG-----------DKKFGMKTLCVLLGKEKVLPLC 41 (116)
Q Consensus 10 I~KDieDveG-----------D~~~gi~Tlpv~lG~~~~~~l~ 41 (116)
|.-|+.|+.| |...|..|+|+.+|.+++..-.
T Consensus 221 i~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 221 VQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 7778887765 6667889999999998865543
No 4
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.14 E-value=10 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q 033565 99 MLIWKLNYVEYI 110 (116)
Q Consensus 99 ~fIWkLFy~EYl 110 (116)
.-||++|--||+
T Consensus 42 ~~I~~~F~~~Yl 53 (55)
T d1sr9a1 42 KEMWDAFAEEYL 53 (55)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 469999999995
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=28.02 E-value=82 Score=21.24 Aligned_cols=76 Identities=4% Similarity=-0.185 Sum_probs=35.4
Q ss_pred hhhHhHhhHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHH-HHHHHHhhccCCChhhHHHHHHHHHH
Q 033565 29 CVLLGKEKVLPLCVNMMLVAYGGAMISGASS----SFMINKIVSIIGHGILAL-ILWLQSKKVDLDNFESTFGFYMLIWK 103 (116)
Q Consensus 29 pv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~----~~~~~~~~~~~~H~~l~~-~lw~r~~~vdl~~k~ai~~fY~fIWk 103 (116)
.=++|+|++..++..+..++......+.... .......+...+.+.... ..-.-++..+.+++....+.++..+.
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 162 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 162 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccc
Confidence 3467888887777665555444332222111 122333444444443222 22233344444555555666665554
Q ss_pred H
Q 033565 104 L 104 (116)
Q Consensus 104 L 104 (116)
+
T Consensus 163 ~ 163 (447)
T d1pw4a_ 163 V 163 (447)
T ss_dssp H
T ss_pred h
Confidence 3
No 6
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=24.47 E-value=96 Score=21.63 Aligned_cols=68 Identities=15% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHhcCCChhhhHhcCCccchhhHhHhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGDKKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGAMISGASSSFMINKIVSIIGHGILALILW 80 (116)
Q Consensus 10 I~KDieDveGD~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~lw 80 (116)
|-.|+.| +.|...|..|.-.++|...+...+-.++..++-.+. ....+..........++...+-.+-
T Consensus 71 IhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~~l~--~~~~~~~~~~l~~~~~~~~~Gq~~d 138 (280)
T d1v4ea_ 71 LHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVE--EIGNNKLRRAFLNVIGKMSEAELIE 138 (280)
T ss_dssp HHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhhccc--ccccccccccchhhcccchhHHHHH
Confidence 6788887 677889999999999999987777766665544332 3323333333344444544444443
No 7
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.98 E-value=1.2e+02 Score=21.08 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=34.1
Q ss_pred HHhcCCChhhh-HhcCCccchhhHhHhhHHHHHHHHHHHHHHHH
Q 033565 10 LLKDLPDVEGD-KKFGMKTLCVLLGKEKVLPLCVNMMLVAYGGA 52 (116)
Q Consensus 10 I~KDieDveGD-~~~gi~Tlpv~lG~~~~~~l~~~ll~~~y~~~ 52 (116)
|--|++|+.+| ...|-.|.-.++|...+...+-.++..++-.+
T Consensus 79 IHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 79 IHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 77899998775 57899999999999988887777666555543
No 8
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.34 E-value=75 Score=20.36 Aligned_cols=27 Identities=11% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhhhhc
Q 033565 88 LDNFESTFGFYMLIWKLNYVEYILIHFL 115 (116)
Q Consensus 88 l~~k~ai~~fY~fIWkLFy~EYll~P~~ 115 (116)
.++.+.+..|.+-+++++ .+|++=||-
T Consensus 89 ~~~~~~i~~~~~~v~~lY-v~~v~NPfy 115 (140)
T d2j3wa1 89 VRQEDGIKNFFTDVYDLY-IKFAMNPFY 115 (140)
T ss_dssp SCCHHHHHHHHHHHHHHH-HHHHHSTTC
T ss_pred CCcchHHHHHHHHHHHHH-HHHhhCccC
Confidence 335567999999999876 899998874
No 9
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=14.26 E-value=8.4 Score=23.78 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=13.9
Q ss_pred HHHHHhcCCChhhhHhc
Q 033565 7 VNGLLKDLPDVEGDKKF 23 (116)
Q Consensus 7 ~iaI~KDieDveGD~~~ 23 (116)
-+|.+|.+-|-|||+.-
T Consensus 7 r~AFI~GLYdAEGDKtg 23 (80)
T d1b24a2 7 QIAFIKGLYVAEGDKTL 23 (80)
T ss_dssp HHHHHHHHHHHHSCTTC
T ss_pred HHHHHHhhhhccccchh
Confidence 36788999999999864
No 10
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=10.54 E-value=34 Score=22.85 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=20.1
Q ss_pred Hhc-CC-ChhhhHhcCCccchhhHhH
Q 033565 11 LKD-LP-DVEGDKKFGMKTLCVLLGK 34 (116)
Q Consensus 11 ~KD-ie-DveGD~~~gi~Tlpv~lG~ 34 (116)
+-| ++ |++|=++.|++|+-|..|.
T Consensus 203 IGDs~~~DI~gA~~aG~~si~V~~G~ 228 (253)
T d1wvia_ 203 VGDNYLTDITAGIKNDIATLLVTTGF 228 (253)
T ss_dssp EESCTTTTHHHHHHTTCEEEEESSSS
T ss_pred EcCChHHHHHHHHHCCCCEEEECCCC
Confidence 345 66 9999999999999988774
Done!