Query 033570
Match_columns 116
No_of_seqs 165 out of 1057
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:48:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0003 Ubiquitin/60s ribosoma 99.9 5.2E-28 1.1E-32 151.5 0.7 110 1-115 1-110 (128)
2 cd01793 Fubi Fubi ubiquitin-li 99.9 2.1E-21 4.5E-26 116.6 9.6 74 1-76 1-74 (74)
3 PTZ00044 ubiquitin; Provisiona 99.9 3.6E-21 7.7E-26 115.8 9.8 76 1-76 1-76 (76)
4 cd01807 GDX_N ubiquitin-like d 99.9 4E-21 8.6E-26 115.3 9.3 73 1-73 1-73 (74)
5 cd01803 Ubiquitin Ubiquitin. U 99.9 5.8E-21 1.3E-25 114.5 9.8 76 1-76 1-76 (76)
6 cd01806 Nedd8 Nebb8-like ubiq 99.9 1E-20 2.3E-25 113.4 10.1 76 1-76 1-76 (76)
7 cd01802 AN1_N ubiquitin-like d 99.9 8.5E-21 1.8E-25 120.6 9.7 76 1-76 28-103 (103)
8 cd01804 midnolin_N Ubiquitin-l 99.8 1.4E-20 3E-25 114.1 8.8 75 1-76 2-76 (78)
9 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 2.6E-20 5.7E-25 111.6 8.4 71 1-71 2-72 (73)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 3.7E-20 8.1E-25 111.1 9.0 74 3-76 1-74 (74)
11 cd01797 NIRF_N amino-terminal 99.8 7.4E-20 1.6E-24 110.9 9.2 74 1-74 1-76 (78)
12 cd01805 RAD23_N Ubiquitin-like 99.8 1.2E-19 2.7E-24 109.3 9.8 73 1-73 1-75 (77)
13 cd01809 Scythe_N Ubiquitin-lik 99.8 3.3E-19 7.2E-24 105.8 9.3 72 1-72 1-72 (72)
14 cd01798 parkin_N amino-termina 99.8 5E-19 1.1E-23 105.0 8.1 70 3-72 1-70 (70)
15 cd01792 ISG15_repeat1 ISG15 ub 99.8 6.8E-19 1.5E-23 107.1 8.0 73 1-73 3-77 (80)
16 cd01794 DC_UbP_C dendritic cel 99.8 9.1E-19 2E-23 104.1 8.0 68 4-71 2-69 (70)
17 PF00240 ubiquitin: Ubiquitin 99.8 1.2E-18 2.5E-23 102.9 8.1 68 6-73 1-68 (69)
18 cd01808 hPLIC_N Ubiquitin-like 99.8 2.3E-18 5.1E-23 102.4 8.8 71 1-72 1-71 (71)
19 cd01800 SF3a120_C Ubiquitin-li 99.8 3.8E-18 8.3E-23 102.8 8.2 70 8-77 5-74 (76)
20 cd01813 UBP_N UBP ubiquitin pr 99.8 7.3E-18 1.6E-22 101.2 8.1 70 1-71 1-73 (74)
21 cd01790 Herp_N Homocysteine-re 99.8 6.1E-18 1.3E-22 102.4 7.7 71 1-71 2-78 (79)
22 cd01812 BAG1_N Ubiquitin-like 99.7 1.4E-17 2.9E-22 98.7 7.9 70 1-71 1-70 (71)
23 cd01796 DDI1_N DNA damage indu 99.7 1.7E-17 3.6E-22 98.9 7.6 68 3-70 1-70 (71)
24 cd01763 Sumo Small ubiquitin-r 99.7 8.8E-17 1.9E-21 99.3 10.0 76 1-76 12-87 (87)
25 smart00213 UBQ Ubiquitin homol 99.7 2.5E-16 5.4E-21 91.0 7.7 64 1-65 1-64 (64)
26 KOG0004 Ubiquitin/40S ribosoma 99.7 3.5E-17 7.6E-22 109.0 4.1 107 1-107 1-113 (156)
27 TIGR00601 rad23 UV excision re 99.7 6.5E-16 1.4E-20 117.3 9.3 73 1-73 1-76 (378)
28 KOG0005 Ubiquitin-like protein 99.6 3.4E-16 7.4E-21 88.6 4.4 70 1-70 1-70 (70)
29 cd01799 Hoil1_N Ubiquitin-like 99.6 1.6E-14 3.4E-19 86.9 8.4 69 2-71 2-74 (75)
30 KOG0010 Ubiquitin-like protein 99.6 3.9E-15 8.4E-20 114.4 7.1 76 1-77 16-91 (493)
31 cd01769 UBL Ubiquitin-like dom 99.6 1.9E-14 4E-19 84.1 7.8 67 5-71 2-68 (69)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 5.7E-15 1.2E-19 88.4 5.1 56 16-71 15-74 (75)
33 PF11976 Rad60-SLD: Ubiquitin- 99.5 6.8E-14 1.5E-18 83.1 7.5 71 1-71 1-72 (72)
34 cd01795 USP48_C USP ubiquitin- 99.5 2E-13 4.3E-18 85.1 6.9 63 12-74 16-79 (107)
35 cd01814 NTGP5 Ubiquitin-like N 99.5 1.6E-13 3.4E-18 87.5 6.1 76 2-77 6-95 (113)
36 KOG0011 Nucleotide excision re 99.4 2.8E-13 6.2E-18 99.9 7.5 74 1-74 1-76 (340)
37 cd01789 Alp11_N Ubiquitin-like 99.3 1.1E-11 2.4E-16 76.0 8.4 70 2-71 3-80 (84)
38 PF14560 Ubiquitin_2: Ubiquiti 99.2 4.2E-11 9.1E-16 73.7 7.3 71 2-72 3-83 (87)
39 PF13881 Rad60-SLD_2: Ubiquiti 99.2 1.4E-10 3.1E-15 74.5 9.7 76 2-77 4-93 (111)
40 PLN02560 enoyl-CoA reductase 99.2 7.3E-11 1.6E-15 87.8 8.3 69 1-69 1-80 (308)
41 cd01788 ElonginB Ubiquitin-lik 99.2 2.1E-10 4.5E-15 73.2 7.9 78 1-78 1-86 (119)
42 KOG4248 Ubiquitin-like protein 99.1 1.9E-10 4E-15 95.0 7.0 74 2-76 4-77 (1143)
43 cd01801 Tsc13_N Ubiquitin-like 99.1 6.4E-10 1.4E-14 67.0 6.9 69 1-69 1-74 (77)
44 KOG0001 Ubiquitin and ubiquiti 99.0 5.6E-09 1.2E-13 60.6 9.4 72 3-74 2-73 (75)
45 PF11543 UN_NPL4: Nuclear pore 98.9 2E-09 4.3E-14 65.4 5.2 69 1-70 5-78 (80)
46 KOG3493 Ubiquitin-like protein 98.9 5.5E-10 1.2E-14 64.3 1.6 70 1-70 2-71 (73)
47 cd00196 UBQ Ubiquitin-like pro 98.9 3.7E-08 8E-13 54.5 8.0 66 6-71 3-68 (69)
48 PF13019 Telomere_Sde2: Telome 98.8 5.7E-08 1.2E-12 65.9 9.3 109 1-110 1-127 (162)
49 cd01811 OASL_repeat1 2'-5' oli 98.7 1.1E-07 2.3E-12 56.4 7.6 71 1-72 1-76 (80)
50 KOG1872 Ubiquitin-specific pro 98.7 3.6E-08 7.9E-13 76.0 7.1 74 2-76 5-79 (473)
51 KOG1769 Ubiquitin-like protein 98.7 2.5E-07 5.3E-12 57.8 9.1 76 2-77 22-97 (99)
52 KOG0006 E3 ubiquitin-protein l 98.5 3.4E-07 7.4E-12 68.0 6.2 70 1-70 1-73 (446)
53 PF01020 Ribosomal_L40e: Ribos 98.4 9.6E-08 2.1E-12 52.7 0.8 33 78-115 2-34 (52)
54 KOG4495 RNA polymerase II tran 98.3 1.5E-06 3.3E-11 54.0 4.4 63 1-63 1-66 (110)
55 PF08817 YukD: WXG100 protein 98.2 5.7E-06 1.2E-10 49.9 5.6 68 2-69 4-78 (79)
56 PF11470 TUG-UBL1: GLUT4 regul 98.1 2.5E-05 5.4E-10 45.6 6.4 63 7-69 3-65 (65)
57 PF00789 UBX: UBX domain; Int 98.0 0.00011 2.3E-09 44.3 9.0 69 2-70 8-81 (82)
58 COG5227 SMT3 Ubiquitin-like pr 98.0 1.9E-05 4.1E-10 48.6 4.6 76 2-77 26-101 (103)
59 smart00166 UBX Domain present 97.8 0.00024 5.2E-09 42.8 8.1 68 2-69 6-78 (80)
60 PF10302 DUF2407: DUF2407 ubiq 97.8 8.5E-05 1.8E-09 46.6 5.6 57 3-59 3-64 (97)
61 cd01772 SAKS1_UBX SAKS1-like U 97.7 0.00073 1.6E-08 40.7 8.4 67 2-69 6-77 (79)
62 COG5417 Uncharacterized small 97.7 0.00054 1.2E-08 40.7 7.5 64 6-69 12-80 (81)
63 KOG1639 Steroid reductase requ 97.7 0.00014 3E-09 52.7 5.7 74 1-76 1-81 (297)
64 cd01767 UBX UBX (ubiquitin reg 97.6 0.00095 2.1E-08 39.8 8.4 66 2-69 4-74 (77)
65 PRK04136 rpl40e 50S ribosomal 97.6 2.8E-05 6E-10 42.3 1.5 27 84-115 5-31 (48)
66 cd01770 p47_UBX p47-like ubiqu 97.6 0.0008 1.7E-08 40.6 7.9 66 2-67 6-75 (79)
67 cd01773 Faf1_like1_UBX Faf1 ik 97.5 0.0022 4.7E-08 39.1 8.5 68 2-70 7-79 (82)
68 cd01771 Faf1_UBX Faf1 UBX doma 97.4 0.0027 5.9E-08 38.4 8.3 68 2-70 6-78 (80)
69 cd01774 Faf1_like2_UBX Faf1 ik 97.4 0.0035 7.6E-08 38.3 8.6 68 2-70 6-83 (85)
70 KOG0013 Uncharacterized conser 97.4 0.00062 1.3E-08 48.1 5.8 66 9-74 155-220 (231)
71 KOG3206 Alpha-tubulin folding 97.1 0.0026 5.7E-08 44.9 6.8 73 2-74 3-83 (234)
72 PRK08364 sulfur carrier protei 97.1 0.0097 2.1E-07 34.9 8.2 65 2-76 6-70 (70)
73 PRK06437 hypothetical protein; 97.1 0.01 2.2E-07 34.6 8.2 63 5-76 5-67 (67)
74 PRK06488 sulfur carrier protei 97.1 0.009 1.9E-07 34.4 7.7 65 1-76 1-65 (65)
75 cd06409 PB1_MUG70 The MUG70 pr 96.9 0.0054 1.2E-07 37.7 6.2 44 2-45 2-48 (86)
76 KOG4583 Membrane-associated ER 96.9 0.00038 8.3E-09 52.3 1.1 59 2-60 11-73 (391)
77 PF14836 Ubiquitin_3: Ubiquiti 96.8 0.012 2.6E-07 36.2 7.3 68 11-79 14-87 (88)
78 PF15044 CLU_N: Mitochondrial 96.7 0.0036 7.8E-08 37.5 4.4 57 17-73 1-59 (76)
79 cd00754 MoaD Ubiquitin domain 96.6 0.021 4.5E-07 33.8 7.2 60 12-76 17-80 (80)
80 PF09379 FERM_N: FERM N-termin 96.4 0.038 8.2E-07 32.7 7.5 58 5-62 1-65 (80)
81 PLN02799 Molybdopterin synthas 96.4 0.024 5.1E-07 34.0 6.6 71 1-76 2-82 (82)
82 PF12754 Blt1: Cell-cycle cont 96.3 0.00096 2.1E-08 49.7 0.0 76 2-77 80-182 (309)
83 PRK05863 sulfur carrier protei 96.3 0.047 1E-06 31.5 7.0 65 1-76 1-65 (65)
84 cd06406 PB1_P67 A PB1 domain i 96.3 0.028 6E-07 34.1 6.0 38 12-49 12-49 (80)
85 PRK08053 sulfur carrier protei 96.3 0.093 2E-06 30.3 8.2 66 1-76 1-66 (66)
86 PRK05659 sulfur carrier protei 96.1 0.097 2.1E-06 30.0 7.7 66 1-76 1-66 (66)
87 PF11620 GABP-alpha: GA-bindin 96.1 0.044 9.5E-07 33.5 6.2 60 13-72 5-64 (88)
88 PF10790 DUF2604: Protein of U 96.0 0.055 1.2E-06 31.4 6.3 65 9-73 4-72 (76)
89 TIGR01682 moaD molybdopterin c 95.9 0.11 2.4E-06 30.9 7.7 60 12-76 17-80 (80)
90 PF02597 ThiS: ThiS family; I 95.9 0.058 1.3E-06 31.5 6.2 63 12-76 13-77 (77)
91 PF14453 ThiS-like: ThiS-like 95.9 0.051 1.1E-06 30.8 5.6 56 1-72 1-56 (57)
92 cd00565 ThiS ThiaminS ubiquiti 95.8 0.079 1.7E-06 30.4 6.4 58 14-76 8-65 (65)
93 PRK07696 sulfur carrier protei 95.7 0.16 3.5E-06 29.5 7.6 66 1-76 1-67 (67)
94 cd06407 PB1_NLP A PB1 domain i 95.7 0.092 2E-06 31.8 6.6 47 1-48 1-48 (82)
95 PRK06083 sulfur carrier protei 95.7 0.13 2.7E-06 31.4 7.2 57 15-76 28-84 (84)
96 PRK07440 hypothetical protein; 95.6 0.15 3.3E-06 29.9 7.4 61 9-76 10-70 (70)
97 TIGR01683 thiS thiamine biosyn 95.5 0.14 3.1E-06 29.2 6.7 61 9-76 4-64 (64)
98 TIGR01687 moaD_arch MoaD famil 95.4 0.18 3.8E-06 30.5 7.4 62 11-76 16-88 (88)
99 PRK06944 sulfur carrier protei 95.4 0.24 5.2E-06 28.2 8.3 65 1-76 1-65 (65)
100 KOG0012 DNA damage inducible p 95.3 0.032 7E-07 42.5 4.5 72 1-72 1-76 (380)
101 smart00666 PB1 PB1 domain. Pho 95.1 0.16 3.4E-06 30.1 6.4 45 3-48 4-48 (81)
102 COG1552 RPL40A Ribosomal prote 95.0 0.0076 1.7E-07 32.9 0.4 27 84-115 5-31 (50)
103 TIGR02958 sec_mycoba_snm4 secr 94.6 0.31 6.6E-06 38.5 8.4 71 2-73 4-81 (452)
104 PRK11840 bifunctional sulfur c 94.3 0.41 8.9E-06 36.3 8.0 69 1-79 1-69 (326)
105 COG2104 ThiS Sulfur transfer p 94.2 0.63 1.4E-05 27.2 7.4 58 14-76 11-68 (68)
106 cd06408 PB1_NoxR The PB1 domai 94.0 0.5 1.1E-05 29.0 6.7 53 2-58 4-56 (86)
107 cd06411 PB1_p51 The PB1 domain 93.7 0.42 9E-06 28.8 5.9 36 12-47 8-43 (78)
108 cd06396 PB1_NBR1 The PB1 domai 93.6 0.33 7.1E-06 29.5 5.3 35 9-45 8-44 (81)
109 smart00295 B41 Band 4.1 homolo 93.3 1.6 3.5E-05 29.8 9.2 72 2-73 5-84 (207)
110 cd05992 PB1 The PB1 domain is 93.2 0.56 1.2E-05 27.5 6.0 46 2-48 2-48 (81)
111 PRK11130 moaD molybdopterin sy 92.7 1.3 2.8E-05 26.4 7.4 57 15-76 19-81 (81)
112 smart00455 RBD Raf-like Ras-bi 92.6 0.99 2.2E-05 26.4 6.3 45 3-47 2-46 (70)
113 PF00564 PB1: PB1 domain; Int 92.6 0.65 1.4E-05 27.5 5.7 44 3-47 4-48 (84)
114 cd01760 RBD Ubiquitin-like dom 92.3 0.8 1.7E-05 27.1 5.7 44 3-46 2-45 (72)
115 PTZ00380 microtubule-associate 91.7 0.23 5.1E-06 32.3 3.1 58 15-72 45-105 (121)
116 COG5100 NPL4 Nuclear pore prot 91.5 1.8 3.8E-05 34.0 8.1 70 1-71 1-78 (571)
117 KOG2086 Protein tyrosine phosp 91.3 0.51 1.1E-05 36.4 5.0 65 2-66 307-375 (380)
118 PF10407 Cytokin_check_N: Cdc1 89.7 2 4.4E-05 25.5 5.6 62 11-73 3-71 (73)
119 cd06410 PB1_UP2 Uncharacterize 89.3 2.5 5.3E-05 26.4 6.1 39 6-45 18-56 (97)
120 KOG2689 Predicted ubiquitin re 89.2 1.7 3.8E-05 32.2 6.1 68 2-69 212-284 (290)
121 cd06398 PB1_Joka2 The PB1 doma 88.9 3.8 8.1E-05 25.3 6.7 40 9-48 8-53 (91)
122 PF14732 UAE_UbL: Ubiquitin/SU 88.7 0.77 1.7E-05 28.0 3.5 55 16-70 3-67 (87)
123 PF02196 RBD: Raf-like Ras-bin 88.6 3.4 7.3E-05 24.2 6.7 56 3-58 3-60 (71)
124 KOG4250 TANK binding protein k 87.7 1.9 4E-05 36.0 5.9 42 9-50 323-364 (732)
125 PF14451 Ub-Mut7C: Mut7-C ubiq 87.4 4.5 9.8E-05 24.4 6.2 54 10-72 22-76 (81)
126 PF08825 E2_bind: E2 binding d 87.1 1.6 3.5E-05 26.6 4.1 56 15-71 1-70 (84)
127 PF14533 USP7_C2: Ubiquitin-sp 87.1 4.1 8.9E-05 28.8 6.9 48 12-59 35-90 (213)
128 cd01787 GRB7_RA RA (RAS-associ 86.9 5.2 0.00011 24.5 6.4 56 3-58 5-67 (85)
129 PF10209 DUF2340: Uncharacteri 86.7 1.7 3.8E-05 28.3 4.3 57 16-72 21-108 (122)
130 cd01766 Ufm1 Urm1-like ubiquit 85.5 5.8 0.00013 23.7 6.2 61 14-74 19-80 (82)
131 PF00788 RA: Ras association ( 84.9 6.1 0.00013 23.4 6.1 42 3-44 5-52 (93)
132 KOG2561 Adaptor protein NUB1, 84.4 0.62 1.4E-05 36.9 1.7 59 14-72 53-111 (568)
133 cd01611 GABARAP Ubiquitin doma 84.4 2.5 5.4E-05 27.1 4.2 58 14-72 44-106 (112)
134 KOG2507 Ubiquitin regulatory p 83.7 2.6 5.7E-05 33.2 4.8 75 2-76 316-395 (506)
135 PF00276 Ribosomal_L23: Riboso 83.7 3.7 8.1E-05 25.2 4.7 40 11-50 21-61 (91)
136 cd01768 RA RA (Ras-associating 83.3 7.3 0.00016 23.1 6.3 35 10-44 12-48 (87)
137 PF02991 Atg8: Autophagy prote 83.1 4 8.6E-05 25.8 4.7 45 15-59 37-82 (104)
138 PF06234 TmoB: Toluene-4-monoo 82.1 9.2 0.0002 23.4 6.6 60 13-72 17-84 (85)
139 PRK05738 rplW 50S ribosomal pr 82.0 6.2 0.00013 24.3 5.2 40 10-49 20-60 (92)
140 KOG2982 Uncharacterized conser 82.0 2.3 4.9E-05 32.5 3.8 56 15-70 352-415 (418)
141 PF08337 Plexin_cytopl: Plexin 81.9 3.7 8E-05 33.3 5.2 64 11-74 202-291 (539)
142 PF02017 CIDE-N: CIDE-N domain 81.5 9.2 0.0002 23.0 5.6 62 5-72 7-71 (78)
143 cd01764 Urm1 Urm1-like ubuitin 80.4 7.4 0.00016 24.0 5.2 56 16-76 24-94 (94)
144 PF12436 USP7_ICP0_bdg: ICP0-b 79.8 2.5 5.5E-05 30.6 3.4 59 15-73 89-153 (249)
145 PF11069 DUF2870: Protein of u 79.4 2.9 6.4E-05 26.2 3.1 35 42-76 3-38 (98)
146 cd06397 PB1_UP1 Uncharacterize 78.8 12 0.00026 22.7 5.9 42 3-45 3-44 (82)
147 KOG3439 Protein conjugation fa 78.7 10 0.00022 24.4 5.4 46 13-58 47-94 (116)
148 cd01775 CYR1_RA Ubiquitin doma 78.4 14 0.0003 23.2 6.3 68 3-70 5-85 (97)
149 PF11834 DUF3354: Domain of un 78.0 5.3 0.00012 23.4 3.8 43 21-69 26-68 (69)
150 PF14533 USP7_C2: Ubiquitin-sp 77.4 2.7 5.8E-05 29.8 2.8 30 10-39 132-161 (213)
151 cd01777 SNX27_RA Ubiquitin dom 77.4 8.6 0.00019 23.6 4.7 40 2-41 3-42 (87)
152 TIGR03636 L23_arch archaeal ri 76.9 9.4 0.0002 22.8 4.7 34 11-44 15-48 (77)
153 PF12436 USP7_ICP0_bdg: ICP0-b 76.2 8.5 0.00019 27.9 5.2 43 2-44 178-223 (249)
154 smart00144 PI3K_rbd PI3-kinase 75.8 17 0.00037 22.9 7.1 70 3-72 20-104 (108)
155 smart00314 RA Ras association 75.7 14 0.00031 22.0 6.5 48 10-57 15-70 (90)
156 PRK01777 hypothetical protein; 75.5 17 0.00036 22.6 7.4 52 13-73 19-77 (95)
157 cd01776 Rin1_RA Ubiquitin doma 75.0 14 0.00031 22.5 5.1 44 10-53 12-61 (87)
158 cd01612 APG12_C Ubiquitin-like 74.5 8.7 0.00019 23.4 4.2 59 13-71 18-80 (87)
159 PRK14548 50S ribosomal protein 74.3 12 0.00026 22.7 4.8 34 11-44 22-55 (84)
160 smart00266 CAD Domains present 73.7 16 0.00036 21.7 5.2 37 22-58 20-58 (74)
161 cd06539 CIDE_N_A CIDE_N domain 72.4 18 0.00039 21.8 5.1 46 22-69 22-69 (78)
162 COG0089 RplW Ribosomal protein 72.3 12 0.00027 23.3 4.5 38 10-47 21-59 (94)
163 PF00794 PI3K_rbd: PI3-kinase 71.9 21 0.00045 22.1 5.9 70 2-71 18-101 (106)
164 cd01615 CIDE_N CIDE_N domain, 71.3 20 0.00043 21.6 5.2 37 22-58 22-60 (78)
165 PF03671 Ufm1: Ubiquitin fold 71.0 19 0.00042 21.3 5.2 57 13-69 18-75 (76)
166 PF02192 PI3K_p85B: PI3-kinase 70.3 7.7 0.00017 23.3 3.2 23 13-35 2-24 (78)
167 KOG0007 Splicing factor 3a, su 70.2 2.1 4.6E-05 32.5 1.0 49 8-56 290-339 (341)
168 cd01817 RGS12_RBD Ubiquitin do 68.6 22 0.00048 21.1 8.0 44 5-48 4-47 (73)
169 cd01818 TIAM1_RBD Ubiquitin do 68.5 23 0.0005 21.2 5.5 38 5-42 4-41 (77)
170 KOG1364 Predicted ubiquitin re 68.3 6.3 0.00014 30.2 3.0 65 2-66 279-349 (356)
171 CHL00030 rpl23 ribosomal prote 68.0 18 0.00038 22.4 4.6 39 10-48 19-58 (93)
172 cd01782 AF6_RA_repeat1 Ubiquit 67.3 30 0.00066 22.2 6.2 37 1-37 24-62 (112)
173 PF06622 SepQ: SepQ protein; 67.0 35 0.00076 25.1 6.5 57 19-75 139-197 (305)
174 KOG4598 Putative ubiquitin-spe 66.9 13 0.00029 31.5 4.8 57 12-70 878-940 (1203)
175 KOG4572 Predicted DNA-binding 65.7 19 0.00042 31.1 5.5 62 9-70 3-68 (1424)
176 PF08783 DWNN: DWNN domain; I 62.2 31 0.00066 20.5 5.3 24 13-36 12-36 (74)
177 smart00143 PI3K_p85B PI3-kinas 61.6 13 0.00029 22.3 3.0 23 13-35 2-24 (78)
178 KOG3391 Transcriptional co-rep 61.1 10 0.00022 25.3 2.7 30 47-76 111-140 (151)
179 PF13699 DUF4157: Domain of un 59.5 35 0.00075 20.3 4.6 47 24-70 4-50 (79)
180 PRK12280 rplW 50S ribosomal pr 59.1 30 0.00065 23.6 4.8 40 10-49 22-62 (158)
181 COG1977 MoaD Molybdopterin con 57.3 39 0.00085 20.1 4.7 52 20-76 27-84 (84)
182 PF02824 TGS: TGS domain; Int 54.2 37 0.0008 18.9 5.8 59 3-70 1-59 (60)
183 KOG2660 Locus-specific chromos 52.2 12 0.00025 28.6 2.1 46 14-59 167-214 (331)
184 cd06538 CIDE_N_FSP27 CIDE_N do 51.4 52 0.0011 19.8 5.1 37 22-58 22-59 (79)
185 cd06536 CIDE_N_ICAD CIDE_N dom 49.7 57 0.0012 19.7 4.6 37 22-58 22-62 (80)
186 PTZ00191 60S ribosomal protein 49.5 50 0.0011 22.2 4.5 35 10-44 82-116 (145)
187 PF03658 Ub-RnfH: RnfH family 49.1 59 0.0013 19.8 5.2 56 13-73 16-74 (84)
188 PF01577 Peptidase_S30: Potyvi 48.7 68 0.0015 22.8 5.5 72 2-74 151-225 (245)
189 PF08154 NLE: NLE (NUC135) dom 46.7 54 0.0012 18.6 6.1 51 2-52 3-59 (65)
190 PF08299 Bac_DnaA_C: Bacterial 45.9 8.3 0.00018 22.3 0.4 20 22-41 1-20 (70)
191 PF14847 Ras_bdg_2: Ras-bindin 45.9 76 0.0016 20.1 5.5 36 3-38 3-38 (105)
192 PF04126 Cyclophil_like: Cyclo 45.5 18 0.00039 23.3 1.9 29 1-30 1-29 (120)
193 PF09469 Cobl: Cordon-bleu ubi 44.1 17 0.00037 21.8 1.5 35 29-63 2-39 (79)
194 KOG4146 Ubiquitin-like protein 43.8 80 0.0017 19.7 5.6 57 19-76 34-101 (101)
195 KOG1654 Microtubule-associated 43.6 39 0.00084 21.8 3.1 45 14-58 48-93 (116)
196 KOG4147 Uncharacterized conser 42.7 29 0.00063 22.3 2.5 55 16-70 28-111 (127)
197 PF13180 PDZ_2: PDZ domain; PD 41.3 61 0.0013 18.7 3.7 55 11-73 15-71 (82)
198 cd06404 PB1_aPKC PB1 domain is 41.2 82 0.0018 19.1 6.6 40 9-48 8-48 (83)
199 KOG0009 Ubiquitin-like/40S rib 41.1 7.3 0.00016 22.1 -0.4 18 76-93 2-19 (62)
200 PF01376 Enterotoxin_b: Heat-l 41.0 44 0.00096 20.4 3.0 31 3-33 38-68 (102)
201 smart00760 Bac_DnaA_C Bacteria 41.0 16 0.00035 20.3 1.1 20 22-41 1-20 (60)
202 PF11816 DUF3337: Domain of un 41.0 1.1E+02 0.0024 23.1 5.9 59 15-73 252-328 (331)
203 PF04110 APG12: Ubiquitin-like 40.5 79 0.0017 19.3 4.1 47 13-59 18-66 (87)
204 KOG3483 Uncharacterized conser 40.2 83 0.0018 18.9 5.5 62 15-76 31-93 (94)
205 PF03931 Skp1_POZ: Skp1 family 39.1 26 0.00057 19.5 1.8 32 1-32 1-32 (62)
206 PF03002 Somatostatin: Somatos 38.0 19 0.00041 15.4 0.8 11 92-102 3-13 (18)
207 cd06537 CIDE_N_B CIDE_N domain 37.9 94 0.002 18.8 5.0 36 22-58 22-59 (81)
208 KOG2013 SMT3/SUMO-activating c 37.6 64 0.0014 26.3 4.2 56 13-70 445-509 (603)
209 PF14807 AP4E_app_platf: Adapt 37.3 1.1E+02 0.0023 19.4 4.5 58 18-76 28-89 (104)
210 cd01783 DAGK_delta_RA Ubiquiti 36.8 1.1E+02 0.0023 19.2 4.4 32 13-44 19-53 (97)
211 PF13439 Glyco_transf_4: Glyco 36.1 46 0.00099 21.1 2.8 27 24-51 148-174 (177)
212 PRK05841 flgE flagellar hook p 33.9 58 0.0013 27.0 3.5 37 1-37 249-294 (603)
213 PF01187 MIF: Macrophage migra 33.6 54 0.0012 20.6 2.8 24 23-46 76-99 (114)
214 cd01666 TGS_DRG_C TGS_DRG_C: 32.8 1.1E+02 0.0023 18.0 6.1 65 1-70 2-74 (75)
215 PF07929 PRiA4_ORF3: Plasmid p 30.7 90 0.002 21.1 3.7 27 13-39 20-46 (179)
216 COG3760 Uncharacterized conser 30.5 77 0.0017 21.6 3.1 32 2-35 47-78 (164)
217 PF06487 SAP18: Sin3 associate 30.1 76 0.0017 20.6 3.0 61 11-71 37-120 (120)
218 PF12053 DUF3534: Domain of un 29.5 1.8E+02 0.0039 19.6 7.9 71 1-73 1-81 (145)
219 cd01784 rasfadin_RA Ubiquitin- 28.5 1.5E+02 0.0032 18.2 4.0 30 10-39 12-41 (87)
220 PTZ00397 macrophage migration 27.9 1.1E+02 0.0023 19.2 3.4 23 24-46 79-101 (116)
221 PF09358 UBA_e1_C: Ubiquitin-a 27.8 54 0.0012 21.3 2.0 26 14-39 36-61 (125)
222 PF13592 HTH_33: Winged helix- 27.7 77 0.0017 17.4 2.5 21 19-39 3-23 (60)
223 PF01282 Ribosomal_S24e: Ribos 27.6 1.1E+02 0.0023 18.4 3.2 25 19-43 11-35 (84)
224 TIGR02008 fdx_plant ferredoxin 27.6 1.3E+02 0.0029 18.2 3.7 25 2-26 4-28 (97)
225 PF09269 DUF1967: Domain of un 27.4 40 0.00086 19.5 1.2 16 54-69 47-62 (69)
226 PF09014 Sushi_2: Beta-2-glyco 27.2 84 0.0018 19.2 2.6 40 35-75 5-44 (85)
227 PF03607 DCX: Doublecortin; I 27.1 1.2E+02 0.0026 16.8 4.2 41 21-67 9-51 (60)
228 PF14603 hSH3: Helically-exten 26.6 64 0.0014 19.9 2.1 36 39-74 9-48 (89)
229 cd06405 PB1_Mekk2_3 The PB1 do 26.3 1.5E+02 0.0033 17.7 4.7 36 2-38 2-37 (79)
230 PLN02593 adrenodoxin-like ferr 26.3 1.8E+02 0.0039 18.5 4.3 26 1-26 1-26 (117)
231 PRK10872 relA (p)ppGpp synthet 25.9 4.3E+02 0.0093 22.7 8.1 66 2-76 405-470 (743)
232 PF10831 DUF2556: Protein of u 25.7 33 0.00072 18.6 0.6 16 96-116 36-51 (53)
233 PF03147 FDX-ACB: Ferredoxin-f 25.2 1E+02 0.0022 18.5 2.9 40 11-50 8-49 (94)
234 PF05402 PqqD: Coenzyme PQQ sy 24.8 46 0.001 18.5 1.2 22 18-39 27-48 (68)
235 PF04023 FeoA: FeoA domain; I 24.7 68 0.0015 18.1 1.9 21 54-74 26-46 (74)
236 PF09967 DUF2201: VWA-like dom 24.7 1.9E+02 0.0041 18.5 4.2 46 13-58 3-51 (126)
237 PF09138 Urm1: Urm1 (Ubiquitin 24.3 53 0.0012 20.5 1.5 64 11-76 18-96 (96)
238 TIGR03595 Obg_CgtA_exten Obg f 24.3 54 0.0012 18.9 1.4 18 53-70 46-63 (69)
239 PF02594 DUF167: Uncharacteris 23.9 82 0.0018 18.6 2.2 26 23-48 42-67 (77)
240 PF13579 Glyco_trans_4_4: Glyc 23.7 71 0.0015 19.8 2.0 22 25-47 139-160 (160)
241 PRK02220 4-oxalocrotonate taut 23.5 1.3E+02 0.0029 16.1 4.1 20 26-45 24-43 (61)
242 PF07984 DUF1693: Domain of un 23.3 83 0.0018 24.0 2.6 39 4-44 18-56 (320)
243 PF12949 HeH: HeH/LEM domain; 23.2 67 0.0015 16.1 1.4 15 19-33 2-16 (35)
244 KOG2378 cAMP-regulated guanine 23.1 4.2E+02 0.0091 21.6 6.5 63 7-72 242-311 (573)
245 cd01778 RASSF1_RA Ubiquitin-li 23.0 2E+02 0.0044 17.9 5.2 33 8-40 14-46 (96)
246 cd05484 retropepsin_like_LTR_2 22.5 1.8E+02 0.0038 17.1 3.7 43 9-51 8-54 (91)
247 PF02505 MCR_D: Methyl-coenzym 22.5 2.6E+02 0.0056 19.0 4.8 43 13-59 77-120 (153)
248 cd07028 RNAP_RPB3_like RPB3 su 22.4 2.7E+02 0.0058 19.8 4.9 59 1-59 1-62 (212)
249 PTZ00450 macrophage migration 21.6 1.5E+02 0.0032 18.8 3.2 24 24-47 79-102 (113)
250 KOG4361 BCL2-associated athano 21.3 44 0.00095 25.7 0.8 60 13-72 73-138 (344)
251 PTZ00490 Ferredoxin superfamil 21.0 2.1E+02 0.0046 19.0 4.0 25 2-26 37-61 (143)
252 PRK00982 acpP acyl carrier pro 20.8 98 0.0021 17.6 2.1 38 23-69 5-43 (78)
253 COG2080 CoxS Aerobic-type carb 20.8 1.9E+02 0.004 19.8 3.6 63 2-67 3-72 (156)
254 COG1918 FeoA Fe2+ transport sy 20.6 1.1E+02 0.0024 18.0 2.3 23 54-76 25-47 (75)
255 PF13670 PepSY_2: Peptidase pr 20.5 1.9E+02 0.0042 16.8 3.5 20 2-21 57-76 (83)
256 PF09581 Spore_III_AF: Stage I 20.5 71 0.0015 21.7 1.6 24 21-44 164-187 (188)
257 COG2029 Uncharacterized conser 20.4 38 0.00083 23.5 0.3 29 43-71 13-41 (189)
258 PF08766 DEK_C: DEK C terminal 20.3 50 0.0011 17.9 0.7 21 20-40 20-40 (54)
259 KOG3751 Growth factor receptor 20.3 2.9E+02 0.0063 22.9 5.1 68 3-70 191-269 (622)
260 cd05748 Ig_Titin_like Immunogl 20.2 1.7E+02 0.0037 16.0 3.3 20 34-53 9-28 (74)
261 PRK06959 putative threonine-ph 20.1 1.4E+02 0.003 22.3 3.2 28 20-48 53-80 (339)
No 1
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.2e-28 Score=151.53 Aligned_cols=110 Identities=88% Similarity=1.197 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+++++...|++..+++.|++||..+|..|..+.|+|++.|+|+|+|+.|.|..++++||+..-++|+++.++.||.+.+
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i~~ 80 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCCCCh
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCcccccccccccccCCCccccccC
Q 033570 81 SLMALARKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 81 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
+++..+.++|.++.+||+||.+ ..|+| -||
T Consensus 81 ~~aalAmK~~~D~lICRkCYAR---~g~~A--e~C 110 (128)
T KOG0003|consen 81 SLAALAMKYNCDKLICRKCYAR---LGPRA--ENC 110 (128)
T ss_pred hHHHHHHHhccchHHHHHHHHh---cCcHH--HHh
Confidence 9999999999999999999999 99999 787
No 2
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.87 E-value=2.1e-21 Score=116.57 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+||.. +.+.++|++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 688999999999999999999999999999999999999999999999999999999999999887
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.86 E-value=3.6e-21 Score=115.82 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+||..+|+.+.+.+++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++|++++++.||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998876
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.86 E-value=4e-21 Score=115.29 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+..+|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|.|+.+|++|||+++++|++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999874
No 5
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.86 E-value=5.8e-21 Score=114.54 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|.|+|+.|+|+.+|++||+.+|++|++++++.||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998887
No 6
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.85 E-value=1e-20 Score=113.43 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|.|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|++.+|++|+++++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998876
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.85 E-value=8.5e-21 Score=120.61 Aligned_cols=76 Identities=51% Similarity=0.763 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999886
No 8
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.84 E-value=1.4e-20 Score=114.13 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=72.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+...|+.+.+++++++||++||+.|+++.++++++|+|+|.|+.|+|+ +|++|||++|++|+++..+.+|
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999998 9999999999999999998887
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.83 E-value=2.6e-20 Score=111.57 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|+|+|++..|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.83 E-value=3.7e-20 Score=111.08 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.6
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+||.+.|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|||+++++++++.++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998876
No 11
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.83 E-value=7.4e-20 Score=110.94 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.4
Q ss_pred CEEEEEcCCCCE-EEEE-ecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~-~~i~-v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+||..+|+. +.++ +++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||+++++|++++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6885 8999999999999999999999999999999999999999999999999999999864
No 12
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.82 E-value=1.2e-19 Score=109.25 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCC--CCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i--~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+..+|+.+.+++++++||.+||+.|++..|+ |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999998874
No 13
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.81 E-value=3.3e-19 Score=105.83 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|+++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998764
No 14
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.79 E-value=5e-19 Score=105.03 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.3
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|++|+|+.+|++|||+++++|+++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999864
No 15
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.79 E-value=6.8e-19 Score=107.09 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEE--EECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L--~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+..+|+.+.++++++.||.+||++|++..++|+++|+| .|+|+.|.|+.+|++||+++|++|+++++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 899999999999999999999999999884
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.79 E-value=9.1e-19 Score=104.11 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.6
Q ss_pred EEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 4 ~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
.|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|++|+|+.+|++|+|+++++|++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999986
No 17
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.78 E-value=1.2e-18 Score=102.87 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.0
Q ss_pred EcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 6 k~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|..+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|||++|++|+++++.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999999999875
No 18
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.78 E-value=2.3e-18 Score=102.44 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.|+|+...|+ ..+++++++||.+||+.|++..|+++++|+|+|+|+.|.|+.+|++||+++|++|+++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 589999999999999999999999999999999999999999999999999999999864
No 19
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.76 E-value=3.8e-18 Score=102.84 Aligned_cols=70 Identities=33% Similarity=0.656 Sum_probs=67.0
Q ss_pred CCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
.+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+|++|+++++.+||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 3688999999999999999999999999999999999999999999999999999999999999998875
No 20
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.75 E-value=7.3e-18 Score=101.22 Aligned_cols=70 Identities=23% Similarity=0.400 Sum_probs=66.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE---CCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~---~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|.|.|++ +|+.+.+++++++||++||++|++.+++|+++|+|+| .|+.+.|+.+|++|++++|+.|+++.
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 6899998 7889999999999999999999999999999999996 89999999999999999999998863
No 21
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.75 E-value=6.1e-18 Score=102.37 Aligned_cols=71 Identities=24% Similarity=0.251 Sum_probs=63.8
Q ss_pred CEEEEEcCCCCEEEE--EecCCCCHHHHHHHHHHhhC--CCCCceEEEECCEEcCCCCccccCC--CCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i--~v~~~~TV~~LK~~I~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~g--i~~g~~I~v~~ 71 (116)
|.|+||+++++.+.+ ++++++||.+||++|++..+ .++++|+|+|+|++|+|+.+|++|+ +.++.+||+++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998554 55899999999999999875 4579999999999999999999996 99999999986
No 22
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.74 E-value=1.4e-17 Score=98.72 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|+|.|++. |+.+.+++++++||.+||++|++.+|+|+++|+|.|+|+.|.|+.+|++||+++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999995 88999999999999999999999999999999999999999999999999999999998864
No 23
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.73 E-value=1.7e-17 Score=98.85 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.8
Q ss_pred EEEEcC-CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCC-CccccCCCCCCCEEEEE
Q 033570 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (116)
Q Consensus 3 v~Vk~~-~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~gi~~g~~I~v~ 70 (116)
|+|+.. +|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|.|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578898 899999999999999999999999999999999999999999887 68999999999999874
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.72 E-value=8.8e-17 Score=99.27 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|.|++.+|+...+.|.+++|+..||++++++.|+|++.|+|+|+|+.|.++.|+.+|++.++++|++++++.||
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999887
No 25
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.68 E-value=2.5e-16 Score=90.98 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~ 65 (116)
|+|.|++.+ +.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++||+++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7899999999999999999999999999999999999999999999999999875
No 26
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.5e-17 Score=109.02 Aligned_cols=107 Identities=71% Similarity=0.919 Sum_probs=96.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC---
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI--- 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~--- 77 (116)
|+|+|+...++...+++.+++||..+|..|+...|||+++|+|+|.|+.|.|..+|+||+|+.-++|+++++++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~kkr 80 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKR 80 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ---CCCchHHHHHHcCCCcccccccccccccCC
Q 033570 78 ---IEPSLMALARKYNQDKMICRKSHTRTRNQF 107 (116)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 107 (116)
....|+...+.....+..-+.||+.+++..
T Consensus 81 kkk~~~~pk~~~~~~kk~~l~~~~y~kvd~ngk 113 (156)
T KOG0004|consen 81 KKKSYTTPKKIKSKHKKVSLAVLKYYKVDENGK 113 (156)
T ss_pred cccccccccccCCCccccccCCccceeeccCcc
Confidence 345566666666666778889999887763
No 27
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=6.5e-16 Score=117.27 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC---CCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+||+.+|+.+.|+|++++||.+||++|++..| +++++|+|+|+|++|+|+.+|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999988764
No 28
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.4e-16 Score=88.63 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|.|.|+++.|+.+.++++|+++|+.+|+.++++.|+||..|+|+|.|+.+.|+.+-.+|.+.-||+++++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999874
No 29
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.58 E-value=1.6e-14 Score=86.91 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=60.2
Q ss_pred EEEEE--cCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcC-CCCccccCCCC-CCCEEEEEE
Q 033570 2 QIFVK--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk--~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~gi~-~g~~I~v~~ 71 (116)
++.|. ...|.++.+++++++||++||++|++..|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34443 3467889999999999999999999999999999999 9999885 67999999998 889998864
No 30
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.58 E-value=3.9e-15 Score=114.45 Aligned_cols=76 Identities=36% Similarity=0.546 Sum_probs=71.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
++|+||+.++ ++.|.|..+.||.+||+.|++++++++++++|+|.|++|+|+.+|..|||++|.+||++++...+.
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~~ 91 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPRP 91 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCCC
Confidence 4799999888 899999999999999999999999999999999999999999999999999999999999866443
No 31
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.57 E-value=1.9e-14 Score=84.13 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.5
Q ss_pred EEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|+..+|+.+.+.+++++||++||++|++.+++|+++|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998864
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.56 E-value=5.7e-15 Score=88.38 Aligned_cols=56 Identities=32% Similarity=0.555 Sum_probs=50.4
Q ss_pred EecC-CCCHHHHHHHHHHhh--CCC-CCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 16 EVES-SDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 16 ~v~~-~~TV~~LK~~I~~~~--~i~-~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
+|+| ++||.+||++|+++. +++ +++|+|+|.|+.|+|+.+|++|||++|++|+++.
T Consensus 15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4444 789999999999996 464 8899999999999999999999999999999985
No 33
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.52 E-value=6.8e-14 Score=83.09 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC-CceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|+|.|++.+|+.+.+.|.+++++..|++.++++.++++ +.++|.|+|+.|+++.|++++|+.+|++|+|++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999874
No 34
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.47 E-value=2e-13 Score=85.09 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=57.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCC-CCccccCCCCCCCEEEEEEecC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
...+.|++++||.+||..|.++++++|.+|+|+++|+.|.| ..+|++|||.++++|.+.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 46788999999999999999999999999999999998865 7899999999999999998743
No 35
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.46 E-value=1.6e-13 Score=87.52 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred EEEEEcCCCCEE-EEEecCCCCHHHHHHHHHHhhC-------CCCCceEEEECCEEcCCCCccccCC------CCCCCEE
Q 033570 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (116)
Q Consensus 2 ~v~Vk~~~g~~~-~i~v~~~~TV~~LK~~I~~~~~-------i~~~~q~L~~~g~~L~d~~tL~~~g------i~~g~~I 67 (116)
.|.++..+|..+ .+.+++++||.+||++|++.++ .+++.|+|+|.|+.|.|+.+|++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 566777788765 5788899999999999997773 4599999999999999999999999 6667899
Q ss_pred EEEEecCCCC
Q 033570 68 HLVLRLRGGI 77 (116)
Q Consensus 68 ~v~~~~~gg~ 77 (116)
||+++....+
T Consensus 86 Hvvlr~~~~~ 95 (113)
T cd01814 86 HVVVQPPLAD 95 (113)
T ss_pred EEEecCCCCC
Confidence 9999876543
No 36
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.45 E-value=2.8e-13 Score=99.88 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC--CCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+||++.++.|.+++.|++||.++|+.|+...| +|.+.|+|+|+|++|.|+.++.+|+++++..|++++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 899999999999999999999999999999988888654
No 37
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.34 E-value=1.1e-11 Score=76.02 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=58.5
Q ss_pred EEEEEcCC-CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCE-----Ec-CCCCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~-g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~-----~L-~d~~tL~~~gi~~g~~I~v~~ 71 (116)
.|.|.+.. .......+++++||.+||++++..+|++++.|+|. |.|+ .| +|+.+|++||+.+|..|+|+-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46666643 33355679999999999999999999999999995 7877 45 678899999999999999874
No 38
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.25 E-value=4.2e-11 Score=73.71 Aligned_cols=71 Identities=27% Similarity=0.530 Sum_probs=57.2
Q ss_pred EEEEEcCCC--CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEEC----CE---Ec-CCCCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~----g~---~L-~d~~tL~~~gi~~g~~I~v~~ 71 (116)
.|.|.+... ......+++++||++||.+|+..+|+|++.|+|.+. +. .+ +|+.+|++||+.+|.+|+|.=
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567777654 478899999999999999999999999999999875 22 24 468899999999999999874
Q ss_pred e
Q 033570 72 R 72 (116)
Q Consensus 72 ~ 72 (116)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 39
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.24 E-value=1.4e-10 Score=74.49 Aligned_cols=76 Identities=29% Similarity=0.461 Sum_probs=57.2
Q ss_pred EEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCC-------CCCceEEEECCEEcCCCCccccCCCCCCC------EE
Q 033570 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGI-------PPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (116)
Q Consensus 2 ~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i-------~~~~q~L~~~g~~L~d~~tL~~~gi~~g~------~I 67 (116)
.|.++..+|. ...+..++++||.+||+.|...+.- .++.+||+|.|+.|+|..+|+++++..|+ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 5666777898 6789999999999999999988731 34578999999999999999999987766 57
Q ss_pred EEEEecCCCC
Q 033570 68 HLVLRLRGGI 77 (116)
Q Consensus 68 ~v~~~~~gg~ 77 (116)
||+++.....
T Consensus 84 Hlvvrp~~~~ 93 (111)
T PF13881_consen 84 HLVVRPNAPE 93 (111)
T ss_dssp EEEE-SSSSS
T ss_pred EEEecCCCCC
Confidence 7788755443
No 40
>PLN02560 enoyl-CoA reductase
Probab=99.21 E-value=7.3e-11 Score=87.81 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=61.1
Q ss_pred CEEEEEcCCCCEE---EEEecCCCCHHHHHHHHHHhhCC-CCCceEEEEC---C----EEcCCCCccccCCCCCCCEEEE
Q 033570 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 1 m~v~Vk~~~g~~~---~i~v~~~~TV~~LK~~I~~~~~i-~~~~q~L~~~---g----~~L~d~~tL~~~gi~~g~~I~v 69 (116)
|+|+|+..+|+.. .+++++++||++||++|+++.++ ++++|+|.+. | ..|+|+.+|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999998888886 69999999999999999999986 8999999973 3 3788999999999999998644
No 41
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.17 E-value=2.1e-10 Score=73.20 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=66.1
Q ss_pred CEEEEEcCCCCE-EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCC-------CCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~-~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi-------~~g~~I~v~~~ 72 (116)
|.++++....++ +.+++.++.||.+||++|+..+..||++|+|+..+.+|+|+++|++||+ .+..+|-+.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 566666665444 5679999999999999999999999999999977788999999999999 56888888888
Q ss_pred cCCCCC
Q 033570 73 LRGGII 78 (116)
Q Consensus 73 ~~gg~~ 78 (116)
...|.+
T Consensus 81 ~~d~~f 86 (119)
T cd01788 81 SSDDTF 86 (119)
T ss_pred cCCCCc
Confidence 766653
No 42
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.9e-10 Score=94.98 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=69.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.|.||+++.++..|.|...+||.+||.+|+++.+|+.+.|+|+|+|++|.|++++.+|+| +|-+||++-|.+.+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999 99999999885544
No 43
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=99.08 E-value=6.4e-10 Score=66.97 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=54.8
Q ss_pred CEEEEEcCC-CCEEEEEe-cCCCCHHHHHHHHHHhhC-CCCCceEEE--ECCEEcCCCCccccCCCCCCCEEEE
Q 033570 1 MQIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 1 m~v~Vk~~~-g~~~~i~v-~~~~TV~~LK~~I~~~~~-i~~~~q~L~--~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
++|.++..+ .....+++ +++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|.++|+.+|++|++
T Consensus 1 ~~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 1 LEILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CeeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 356666655 33322444 578999999999999986 578999886 7899999999999999999999876
No 44
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.03 E-value=5.6e-09 Score=60.58 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=67.2
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
+.+....|+...+.+.+..++..+|.+|+...++++..|++.+.|+.|.|+.+|.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 456677899999999999999999999999999999999999999999999999999999999999988765
No 45
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.94 E-value=2e-09 Score=65.43 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=43.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC---EEc--CCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g---~~L--~d~~tL~~~gi~~g~~I~v~ 70 (116)
|-|.|++.+| .+.+++++++|+.+|+++|++.+++|...+.|..+. ..+ .+..+|+++||+.|+.|++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5688888776 578899999999999999999999999988886322 234 45889999999999999874
No 46
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.5e-10 Score=64.32 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=64.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
+++.+.+.-|+...+.+.+++||+++|..|+.++|..++.+.|.-.+.+++|+-+|++|.|.+|..+.+.
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 3677788889999999999999999999999999999999999888889999999999999999887764
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.85 E-value=3.7e-08 Score=54.54 Aligned_cols=66 Identities=45% Similarity=0.659 Sum_probs=59.7
Q ss_pred EcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 6 k~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
+..++....+.+.++.|+.+|+..|.++++++++.+.|.++|..+.+...+.++++.+++.|++..
T Consensus 3 ~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 3 KLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred EecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 344678888999999999999999999999999999999999999998888899999999998864
No 48
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=98.82 E-value=5.7e-08 Score=65.94 Aligned_cols=109 Identities=27% Similarity=0.376 Sum_probs=78.6
Q ss_pred CEEEEEcCCC----CEEEEEecCCCCHHHHHHHHHHhhCCCCCce-EEEE-CCEEc--CCCCccccCCCCCC----CEEE
Q 033570 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH 68 (116)
Q Consensus 1 m~v~Vk~~~g----~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q-~L~~-~g~~L--~d~~tL~~~gi~~g----~~I~ 68 (116)
|+|.|++.+| .++.+.++++.||.+|+..|.+..+++...+ .|.+ .++.| .++..++++.-.+. .++.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7899999999 5788999999999999999999999988874 3443 34444 45666666654333 3688
Q ss_pred EEEecCCCCCC--CchHHHHHHc----CCCcccccccccccccCCCcc
Q 033570 69 LVLRLRGGIIE--PSLMALARKY----NQDKMICRKSHTRTRNQFPFF 110 (116)
Q Consensus 69 v~~~~~gg~~~--~~~~~~~~~~----~~~~~~c~~~~~~~~~~~~~~ 110 (116)
+..++.||++. .-++.++.+. ....-.||+.-.+ |+++++.
T Consensus 81 l~~rl~GGKGGFGs~Lr~~g~~~s~~k~~n~dscRdL~GR-Rlr~v~~ 127 (162)
T PF13019_consen 81 LSLRLRGGKGGFGSQLRAAGGRMSSKKTTNFDSCRDLSGR-RLRTVNE 127 (162)
T ss_pred EEEeccCCCccHHHHHHHHHHHhhcccCCCcccccCCCCc-ChhhhHH
Confidence 88999999854 3344444333 2223489999888 8877653
No 49
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.74 E-value=1.1e-07 Score=56.45 Aligned_cols=71 Identities=28% Similarity=0.411 Sum_probs=62.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE---CCE--EcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~---~g~--~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
++|+|+..++....+.|+|..+|..+|++|....+++ ..|+|.| +|+ .|.+..+|++|||-+...|.++-.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 5899999999999999999999999999999999987 5999987 333 578999999999998888877644
No 50
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.6e-08 Score=76.03 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=67.0
Q ss_pred EEEEEcCCCCEEEEE-ecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 2 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~-v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.|.|++ .|+.+.++ ++.++|+..||.++...+|++|++|+++++|..+.|+..+..++|++|.+++++.....+
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~~ 79 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEAG 79 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccccc
Confidence 367777 78888887 999999999999999999999999999999999999999999999999999998775544
No 51
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.5e-07 Score=57.81 Aligned_cols=76 Identities=17% Similarity=0.441 Sum_probs=70.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
.+.|+..++....+.|.-+++...|....+++.|++...++++|+|+.+.+..|-.+++..+|+.|.++....||-
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 5667776778889999999999999999999999999999999999999999999999999999999999888774
No 52
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.4e-07 Score=68.04 Aligned_cols=70 Identities=30% Similarity=0.592 Sum_probs=60.3
Q ss_pred CEEEEEcCC---CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~---g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|.+.|.... ...+.+.|+.+.+|.+||+.++...|+|+++.+++|.|+.|.++.++..+.+...+.++++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 566676642 2347889999999999999999999999999999999999999999998888777777766
No 53
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=98.38 E-value=9.6e-08 Score=52.66 Aligned_cols=33 Identities=67% Similarity=0.941 Sum_probs=25.1
Q ss_pred CCCchHHHHHHcCCCcccccccccccccCCCccccccC
Q 033570 78 IEPSLMALARKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
+.|++...+.++|.++|+||+||.+ ++|+| |||
T Consensus 2 iePsl~~la~K~n~~k~ICrkCyar---l~~~A--~nC 34 (52)
T PF01020_consen 2 IEPSLRALAQKYNCDKMICRKCYAR---LPPRA--TNC 34 (52)
T ss_dssp --HHHHHHHHHHHTS-EEETTT--E---E-TTS--SS-
T ss_pred cChHHHHHHHHHcccceecccccCc---CCCCc--cce
Confidence 4688999999999999999999999 99999 999
No 54
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.28 E-value=1.5e-06 Score=53.96 Aligned_cols=63 Identities=30% Similarity=0.449 Sum_probs=51.4
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC--EEcCCCCccccCCCCC
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNIQK 63 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g--~~L~d~~tL~~~gi~~ 63 (116)
|.++++-...+ ++.++..++.||.+||.+++..+.-|++.|+|+... .+|+|.++|+++|..+
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 44555555444 466799999999999999999999999999998744 4789999999998754
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.19 E-value=5.7e-06 Score=49.88 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=49.5
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC------ceEEE-ECCEEcCCCCccccCCCCCCCEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~------~q~L~-~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
+|+|...+|+.+.+.++.+.+|.+|...|.+.++.+.. ...|. -+|..|+++.+|+++||.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 57777755688999999999999999999998876322 24555 5789999999999999999999876
No 56
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.07 E-value=2.5e-05 Score=45.57 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.6
Q ss_pred cCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEE
Q 033570 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
..+++.+.+.+.|++++.++-+...++++++++...|.|+++.|+-+.++.-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 457889999999999999999999999999999999999999999999999999999998864
No 57
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.03 E-value=0.00011 Score=44.34 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=58.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCc-eEEE--ECCEEcCC-C-CccccCCCCCCCEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLED-G-RTLADYNIQKESTLHLV 70 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~--~~g~~L~d-~-~tL~~~gi~~g~~I~v~ 70 (116)
+|.|+.++|+.+.-...+++||.+|..-|......+... ..|+ |-.+.+.+ + .+|+++|+.++++|+|.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 688999999999999999999999999999988776664 7776 66777765 3 79999999999998764
No 58
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.9e-05 Score=48.58 Aligned_cols=76 Identities=17% Similarity=0.371 Sum_probs=68.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
.+.|...+|..+.+.|..+++...|-...+.+.|-..+..|++|+|+.++.+++-++++..+++.|.++....||.
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 3556666788899999999999999999999999999999999999999999999999999999998887777764
No 59
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.84 E-value=0.00024 Score=42.75 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=56.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcCC---CCccccCCCCCCCEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~gi~~g~~I~v 69 (116)
+|.||.++|+.+......++||++|.+-|....+.......|+ |-.+.+.+ +.+|.+.|+.+.+++.|
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 6889999999999999999999999999976666666667776 56667753 57999999988888765
No 60
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.79 E-value=8.5e-05 Score=46.64 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=44.0
Q ss_pred EEEEcCC-CCEEEEEec--CCCCHHHHHHHHHHhhC--CCCCceEEEECCEEcCCCCccccC
Q 033570 3 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 3 v~Vk~~~-g~~~~i~v~--~~~TV~~LK~~I~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~ 59 (116)
|+|+..+ -..+.++++ .+.||..||++|.+... ..-.+++|+|+|+.|.|+..|+.-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 5566654 234667777 78999999999999984 344478999999999998887764
No 61
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.68 E-value=0.00073 Score=40.69 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=55.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcCC---CCccccCCCCCCCEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~gi~~g~~I~v 69 (116)
+|.|+.++|+...-..+.++|+.++.+-|....+-. ....|+ |-.+.+.+ +.+|.+.|+.+..+++|
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 588999999999889999999999999998765433 556666 67777853 57999999999888876
No 62
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.68 E-value=0.00054 Score=40.74 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=54.9
Q ss_pred EcCCCCEEEEEecCCCCHHHHHHHHHHhhCCC---C--CceEEEECCEEcCCCCccccCCCCCCCEEEE
Q 033570 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIP---P--DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 6 k~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~---~--~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
+..+|.++.+.++...++..|...+.+...+. . ..+++.-++++|.++..|.+|+|.+|+.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 55579999999999999999999999887652 2 2467888999999999999999999999865
No 63
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.65 E-value=0.00014 Score=52.67 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=54.4
Q ss_pred CEEEEEcCCCC-E-EEEEecCCCCHHHHHHHHHHh-hCCCCCceEE----EECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGK-T-ITLEVESSDTIDNVKAKIQDK-EGIPPDQQRL----IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~-~-~~i~v~~~~TV~~LK~~I~~~-~~i~~~~q~L----~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|.|++.+.++. . ...+.+...|+.|+++.+.++ ..+.+.++++ .-+|++|.|+++|+++|..+|.+| .++-
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i--~vKD 78 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATI--YVKD 78 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEE--EEec
Confidence 78999988752 2 336778889999999777665 4565544433 358999999999999999999766 4554
Q ss_pred CCC
Q 033570 74 RGG 76 (116)
Q Consensus 74 ~gg 76 (116)
.|.
T Consensus 79 LGp 81 (297)
T KOG1639|consen 79 LGP 81 (297)
T ss_pred cCC
Confidence 444
No 64
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.63 E-value=0.00095 Score=39.80 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=51.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC---CCCccccCCCCCCCEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 69 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~gi~~g~~I~v 69 (116)
+|.|+.++|+...-....++||++|.+-|.....- .....|+ |-.+.+. .+.+|.+.|+.+ +.+.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 58899999999999999999999999999876543 4556666 5566674 478999999994 44433
No 65
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=97.63 E-value=2.8e-05 Score=42.26 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=24.7
Q ss_pred HHHHHcCCCcccccccccccccCCCccccccC
Q 033570 84 ALARKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
..+.+++.++++||+||.+ ++|.| |||
T Consensus 5 ~~A~k~~~~k~ICrkC~AR---np~~A--~~C 31 (48)
T PRK04136 5 EEAEKRVFNKKICMRCNAR---NPWRA--TKC 31 (48)
T ss_pred HHHHHHhhcccchhcccCC---CCccc--ccc
Confidence 4577889999999999999 99999 999
No 66
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.62 E-value=0.0008 Score=40.61 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=53.0
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCC-CCCceEEE--ECCEEcCC-CCccccCCCCCCCEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~gi~~g~~I 67 (116)
+|.|+.++|+.+......++||++|.+-|....+- ......|. |-.+.|.| +.+|.+.|+.+...+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 68899999999999999999999999999987643 23456776 66777755 889999999864443
No 67
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.48 E-value=0.0022 Score=39.09 Aligned_cols=68 Identities=16% Similarity=0.334 Sum_probs=57.8
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC---CCCccccCCCCCCCEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~gi~~g~~I~v~ 70 (116)
+|.|+.++|+...-....++++.+|..-+.. .|.+++..+|+ |--+.+. .+.+|.+.|+.+..++.|-
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 6899999999999999999999999999988 57788888887 5566653 3579999999999998774
No 68
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.40 E-value=0.0027 Score=38.39 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=57.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC---CCCccccCCCCCCCEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~gi~~g~~I~v~ 70 (116)
+|.|+.++|+...-....++++++|-.-|... |.++...+|+ |--+.+. .+.+|.+.|+.+..++.|-
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 68899999999988999999999999999875 7777788887 5566664 3679999999999888764
No 69
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.36 E-value=0.0035 Score=38.33 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=55.3
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEEC--CEEcC--------CCCccccCCCCCCCEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~--g~~L~--------d~~tL~~~gi~~g~~I~v~ 70 (116)
+|.|+.++|+...-....++||++|..-|.. .+..++...|+.+ -+.+. .+.||.+.|+.+..++.|.
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 6889999999998899999999999999964 4556678888754 36664 3679999999988887663
No 70
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00062 Score=48.11 Aligned_cols=66 Identities=27% Similarity=0.413 Sum_probs=58.4
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
.++.+.+.+...+|+.++|..+.++-++.+-.|++.++|..|.|...|.+++|..|...++-+...
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVl 220 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVL 220 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEec
Confidence 456688888999999999999999999999999999999999999999999999997766655443
No 71
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0026 Score=44.95 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=55.7
Q ss_pred EEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECC-----EEcC-CCCccccCCCCCCCEEEEEEec
Q 033570 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 2 ~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g-----~~L~-d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
+|.|.+.... ......+++.||.+||.+++..+|.+++.+.|. |.| ..|+ ++..|..|+..+|-.||++=..
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 4555553222 244578899999999999999999999999886 544 2454 4889999999999999987553
Q ss_pred C
Q 033570 74 R 74 (116)
Q Consensus 74 ~ 74 (116)
.
T Consensus 83 ~ 83 (234)
T KOG3206|consen 83 A 83 (234)
T ss_pred c
Confidence 3
No 72
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.09 E-value=0.0097 Score=34.92 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=47.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+|.+... +....+++++..||.+|-+.+ +++++...+..+|+.+.. +.-+++|+.|.++.-..||
T Consensus 6 ~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 6 RVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 4445332 124667888889999988766 677777788899999864 4446679999988777765
No 73
>PRK06437 hypothetical protein; Provisional
Probab=97.09 E-value=0.01 Score=34.60 Aligned_cols=63 Identities=19% Similarity=0.398 Sum_probs=48.0
Q ss_pred EEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
++-.+++...++++...||.+|-+.+ +++++..-+..+|+.+. .+.-+++|+.|.++.-..||
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 33334566778888889999877654 88888898899999997 44456679999988776665
No 74
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=97.06 E-value=0.009 Score=34.41 Aligned_cols=65 Identities=18% Similarity=0.389 Sum_probs=47.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|.| +|+.+.+ + ..|+.+|.+.+ +++++...+..+++.++ ....++.-+.+|+.|.++.-..||
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 56666 5566665 3 45899888765 66666677889999886 334556667889999999887776
No 75
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.93 E-value=0.0054 Score=37.67 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=39.0
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC---CceEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 45 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~---~~q~L~~ 45 (116)
...++.+.|+.+.+.+.+++++.+|++.|++++|+.. ....|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 3567889999999999999999999999999999876 4777877
No 76
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00038 Score=52.30 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=46.8
Q ss_pred EEEEEcCCCCE--EEEEecCCCCHHHHHHHHHHhhCC-C-CCceEEEECCEEcCCCCccccCC
Q 033570 2 QIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGI-P-PDQQRLIFAGKQLEDGRTLADYN 60 (116)
Q Consensus 2 ~v~Vk~~~g~~--~~i~v~~~~TV~~LK~~I~~~~~i-~-~~~q~L~~~g~~L~d~~tL~~~g 60 (116)
.+.||+.+.+. ..|+.+..+||++||..++..+-- | ..+|||+|.|+.|.|+..|.+.-
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 56788877544 566777789999999999988742 2 35899999999999998888763
No 77
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=96.84 E-value=0.012 Score=36.25 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=47.0
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--E--CCE-EcC-CCCccccCCCCCCCEEEEEEecCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGK-QLE-DGRTLADYNIQKESTLHLVLRLRGGIIE 79 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~--~g~-~L~-d~~tL~~~gi~~g~~I~v~~~~~gg~~~ 79 (116)
..+....+..+||+.+...+.+.+.+ ..+.||. | ++. .|. .+.||.+.||.+|.+|.+-.+...|.++
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtWP 87 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTWP 87 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCCC
Confidence 35667889999999999999999999 5666765 3 222 464 4789999999999999999998888654
No 78
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.75 E-value=0.0036 Score=37.52 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=47.4
Q ss_pred ecCCCCHHHHHHHHHHhhC-CCCCceEEEECCEEcCCCCccccC-CCCCCCEEEEEEec
Q 033570 17 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 73 (116)
Q Consensus 17 v~~~~TV~~LK~~I~~~~~-i~~~~q~L~~~g~~L~d~~tL~~~-gi~~g~~I~v~~~~ 73 (116)
|+++++|.++++.+..... ..-....|.++|..|++...|+++ |+++|..+.++-.+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5688999999999998754 355678899999999998888888 58889999988653
No 79
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=96.62 E-value=0.021 Score=33.78 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=46.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCC----CCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i----~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
...++++...||.+|.+.+...++- ......+..+|+.... +.-+++|+.|.++....||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeCCCCCC
Confidence 3567887789999999999987642 2345677789998873 3457789999999887776
No 80
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=96.44 E-value=0.038 Score=32.69 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=46.0
Q ss_pred EEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCC-CCceEEEE----CCE--EcCCCCccccCCCC
Q 033570 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF----AGK--QLEDGRTLADYNIQ 62 (116)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~-~~~q~L~~----~g~--~L~d~~tL~~~gi~ 62 (116)
|+.++|....+.+++++|+.+|-+.|.++.++. .+..-|.+ +|. -|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 567889999999999999999999999999984 44557777 222 36778889988776
No 81
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=96.43 E-value=0.024 Score=34.01 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=48.2
Q ss_pred CEEEEEcCC------C-CEEEEEecCCCCHHHHHHHHHHhhC-CCC--CceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~------g-~~~~i~v~~~~TV~~LK~~I~~~~~-i~~--~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|.|+... | ....++++...|+.+|.+.+..... +.. ....+..+|+...++. -+++|+.|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~-----~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESA-----ALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCc-----CcCCCCEEEEe
Confidence 556665432 3 4467788888999999999977651 111 1234667888875443 45679999998
Q ss_pred EecCCC
Q 033570 71 LRLRGG 76 (116)
Q Consensus 71 ~~~~gg 76 (116)
....||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 887776
No 82
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=96.33 E-value=0.00096 Score=49.68 Aligned_cols=76 Identities=18% Similarity=0.428 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEec---C--CCCHHHHHHHHHH----------hhCCCCCceE-----EEECCEEcCCCCccccCCC
Q 033570 2 QIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNI 61 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~---~--~~TV~~LK~~I~~----------~~~i~~~~q~-----L~~~g~~L~d~~tL~~~gi 61 (116)
.|++|+..+..+.+.++ + +.||.+||..+++ ..++|.+.++ |+|+.+++.|.++|.+..-
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 45666665555544322 3 5789999999999 8899999999 9999999989889888754
Q ss_pred C-------CCCEEEEEEecCCCC
Q 033570 62 Q-------KESTLHLVLRLRGGI 77 (116)
Q Consensus 62 ~-------~g~~I~v~~~~~gg~ 77 (116)
. .+..+.+.+...||.
T Consensus 160 ~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 160 DSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp -----------------------
T ss_pred cccchhccCCceEEEEEEEECCc
Confidence 3 466777777777775
No 83
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.26 E-value=0.047 Score=31.46 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+| +|+.+ ++++..|+.+|-+. .++++...-+.+++..+..+. ...+ +++|+.|.++.-..||
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 1 MIVVV---NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 56666 45544 44567788877655 488888999999999875421 2235 8999999998877776
No 84
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=96.26 E-value=0.028 Score=34.05 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEE
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~ 49 (116)
.+.|.++++.+..+|.++|.++.++|++.++|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 78899999999999999999999999999999996553
No 85
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.25 E-value=0.093 Score=30.26 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+| +|+.+ +++...|+.+|.+.+ +.+.....+-.+++.++.+ ..++.-+++|+.|.++.-..||
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQPM--QCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 56666 44544 456677899888654 5555678888999998532 3444457889999998887776
No 86
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=96.09 E-value=0.097 Score=29.95 Aligned_cols=66 Identities=20% Similarity=0.379 Sum_probs=46.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+| +|+. ++++...|+.+|-.. .++++...-+.++|..+.-+ ...+.-+++|+.|.++.-..||
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 1 MNIQL---NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 55555 4554 456667888887654 47888888888999888633 3344446789999998877765
No 87
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=96.06 E-value=0.044 Score=33.50 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+...++=..+++.||..++.+.++..+...+...+..|.++++|-+.+++-...+.+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 344566677999999999999999999999999998899999999999987777777665
No 88
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=96.04 E-value=0.055 Score=31.43 Aligned_cols=65 Identities=23% Similarity=0.473 Sum_probs=52.0
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhC---CCCCceEEE-ECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~---i~~~~q~L~-~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
+|+...++..++..+.-..++--+..+ -|++...|. -+|..|+-++.+++||+.++-++++.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 678888888888887766665555543 577777776 57889998999999999999999988874
No 89
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=95.93 E-value=0.11 Score=30.95 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=45.2
Q ss_pred EEEEEecCC-CCHHHHHHHHHHhhC-C--CCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 12 TITLEVESS-DTIDNVKAKIQDKEG-I--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 12 ~~~i~v~~~-~TV~~LK~~I~~~~~-i--~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
...++++.+ .||.+|++.+.+.+. + ......+..+++...+ +.-+++|+.|.+.....||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356788876 899999999998874 1 1234567789998775 3456779999999887776
No 90
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.86 E-value=0.058 Score=31.53 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=49.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCC--CCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i--~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
...+.+....||.+|.+.+...+.- ......+..+|+...+ ...+.-+++|+.|.++....||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5667888899999999999888731 2367788899999977 3555556789999998887776
No 91
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=95.86 E-value=0.051 Score=30.81 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=40.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|.|.. -.+++..+.|+.+||..+.... --++++|-+..++..|.+ |+.|++..|
T Consensus 1 M~I~vN~-----k~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~L~e-----~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVNE-----KEIETEENTTLFELRKESKPDA------DIVILNGFPTKEDIELKE-----GDEVFLIKK 56 (57)
T ss_pred CEEEECC-----EEEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccccCC-----CCEEEEEeC
Confidence 5666633 3567888889999999875432 246899999988877765 888877643
No 92
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=95.79 E-value=0.079 Score=30.38 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=43.4
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.++++...||.+|.+.+ +++++.+.+..+|+.+..+ ...+.-+++|+.|.+..-..||
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 34556678999888776 5777888888999988543 3334457789999999887776
No 93
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=95.72 E-value=0.16 Score=29.46 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCEEEEEecCC-CCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~-~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+| +|+.+ +++.. .||.+|-+. .++++...-+-++|..++.+ ...+.-+++|+.|.++.-..||
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 55665 55544 44444 578776653 47788888888999998543 4555567889999998877765
No 94
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.66 E-value=0.092 Score=31.85 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=37.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC-CceEEEECCE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 48 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-~~q~L~~~g~ 48 (116)
|+|.+.- +|..+.+.++++++..+|++.|++++++.. ..+.|.|...
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 3444443 667889999999999999999999999865 6778888544
No 95
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=95.65 E-value=0.13 Score=31.44 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=42.9
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.+++...||.+|-+. .++++...-+-++|..+.- ...++.-+++|+.|.++--..||
T Consensus 28 ~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 28 IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 344566788877665 3788888888899999843 35666678889999998877776
No 96
>PRK07440 hypothetical protein; Provisional
Probab=95.65 E-value=0.15 Score=29.85 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=44.7
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+|+. +++....||.+|-+. .++++...-+-++|+.+.-+ ...+.-+++|+.|.++.-..||
T Consensus 10 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 5554 556677888887653 47788888899999998532 4455557789999998877776
No 97
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=95.46 E-value=0.14 Score=29.21 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=44.0
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+|+. ++++...|+.+|.+.+ +++++...+..+|+.+..+ ...++-+++|+.|.++.-..||
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4444 4456677899888765 5667788888999988432 3344557789999999887776
No 98
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=95.43 E-value=0.18 Score=30.50 Aligned_cols=62 Identities=13% Similarity=0.286 Sum_probs=45.0
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCC------C-----CCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i------~-----~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
....++++ ..||.+|.+.+.+.+.- . ...+.+..+|+....+.. ..+++|+.|.+.....||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34567776 88999999999887641 1 123667789998765432 557889999999888776
No 99
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=95.38 E-value=0.24 Score=28.15 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=43.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+| +|+ .+++++..|+.+|.+.+ +++ ....+.++|.....+ ...+.-+++|+.|.++....||
T Consensus 1 m~i~v---Ng~--~~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 1 MDIQL---NQQ--TLSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CEEEE---CCE--EEECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 55555 444 34566778999888766 333 346777899987532 2333346789999999887776
No 100
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=95.31 E-value=0.032 Score=42.51 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=60.2
Q ss_pred CEEEEEcC--CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCC--CCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~--~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.++|... ....+.+++..+..+..|+..++...|++....-++|+++++.+ +..+.++|+++++.+.+-.+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 45555444 55668899999999999999999999999999999999999875 57899999999998866554
No 101
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=95.12 E-value=0.16 Score=30.10 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=37.4
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
|.++. ++....+.++++.|..+|+.+|.+.++.+.....|.|...
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 44444 5677889999999999999999999998877888888643
No 102
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=95.05 E-value=0.0076 Score=32.88 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=22.2
Q ss_pred HHHHHcCCCcccccccccccccCCCccccccC
Q 033570 84 ALARKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 84 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
..+.+....+.+|++||.+ +++.| +.|
T Consensus 5 ~~a~~r~~~kkIC~rC~Ar---np~~A--~kC 31 (50)
T COG1552 5 AEAEKRLFNKKICRRCYAR---NPPRA--TKC 31 (50)
T ss_pred HHHHHHHhhHHHHHHhcCC---CCcch--hHH
Confidence 3455667778899999999 99999 887
No 103
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=94.63 E-value=0.31 Score=38.50 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=56.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCC------CCceEEE-ECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP------PDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~------~~~q~L~-~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
+|+|...+ +..++-++.+.+|.+|--.|-+..+-. .....|. .+|.+|+.+.+|.+.||.||+.+++....
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 57777644 558888999999999999998887641 2234444 57889999999999999999999998753
No 104
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.27 E-value=0.41 Score=36.26 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=51.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~ 79 (116)
|+|+| +|+. +++....||.+|-+. .+++++.+-+.+||+.+.- ....+.-+++|+.|.++.-..||.+.
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs~~ 69 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGSDL 69 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCCCC
Confidence 56666 4454 556677888887755 4888889999999999853 34556668889999999999999753
No 105
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=94.17 E-value=0.63 Score=27.23 Aligned_cols=58 Identities=19% Similarity=0.413 Sum_probs=43.4
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.++++...|+.+|-..+ +++++..-+.++|..+..+ ...+.-+++|+.|.++--..||
T Consensus 11 ~~e~~~~~tv~dLL~~l----~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 11 EVEIAEGTTVADLLAQL----GLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEcCCCCcHHHHHHHh----CCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 45666668999887654 8888888899999998643 3455556778999988776665
No 106
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=94.02 E-value=0.5 Score=28.98 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=39.8
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCcccc
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~ 58 (116)
+|.+.. .|....+.++++.+..+|..+|.+++++. ..+++.|... .|--++++
T Consensus 4 kVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 4 RVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 344443 56788899999999999999999999995 5777777665 44444443
No 107
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=93.74 E-value=0.42 Score=28.80 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
++.+.+++..+..+|..+|++++..+++..+|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 467899999999999999999999999999999853
No 108
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=93.56 E-value=0.33 Score=29.45 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=30.1
Q ss_pred CCCEEEEEecC--CCCHHHHHHHHHHhhCCCCCceEEEE
Q 033570 9 TGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 9 ~g~~~~i~v~~--~~TV~~LK~~I~~~~~i~~~~q~L~~ 45 (116)
+|....+.+++ +++..+|++.|+..++++ .+.|.|
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 67788899988 789999999999999998 666655
No 109
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=93.27 E-value=1.6 Score=29.82 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=51.3
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEEEC---C---EEcCCCCccccCCCC-CCCEEEEEEec
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLVLRL 73 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~~~---g---~~L~d~~tL~~~gi~-~g~~I~v~~~~ 73 (116)
.+.|..++|....+.+++.+|+.++.+.++.+.|++.. ..-|.+- + .-++...+|.+.... ....+++..+.
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~r~ 84 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRVKF 84 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEEEE
Confidence 57788889999999999999999999999999998532 3344431 1 235556677776654 34456665553
No 110
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=93.18 E-value=0.56 Score=27.52 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=35.8
Q ss_pred EEEEEcCCCCEEEEEec-CCCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 2 QIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~-~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
.|.++. +|....+.++ .+.|..+|+.+|.+.++.+.....+.|...
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 344554 4567888888 899999999999999998766777777543
No 111
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=92.68 E-value=1.3 Score=26.38 Aligned_cols=57 Identities=11% Similarity=0.209 Sum_probs=37.9
Q ss_pred EEecC-CCCHHHHHHHHHHhhC-----CCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 15 LEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 15 i~v~~-~~TV~~LK~~I~~~~~-----i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+++++ ..||.+|++.+.+++. ......++..++....++. -+++|+.|.+.....||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~-----~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDH-----PLTDGDEVAFFPPVTGG 81 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCC-----CCCCCCEEEEeCCCCCC
Confidence 44443 4799999999988762 1223345556776543333 46789999998887776
No 112
>smart00455 RBD Raf-like Ras-binding domain.
Probab=92.59 E-value=0.99 Score=26.41 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=39.7
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
..|--++|+...+.+.|..|+.++-..+-++.|+.++...+...|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 346678999999999999999999999999999999988887744
No 113
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=92.59 E-value=0.65 Score=27.46 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=34.9
Q ss_pred EEEEcCCCCEEE-EEecCCCCHHHHHHHHHHhhCCCCCceEEEECC
Q 033570 3 IFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 3 v~Vk~~~g~~~~-i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
|.+.. ++.... +.+..+.+..+|+..|++.++.+....+|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 33433 344555 899999999999999999999988888999843
No 114
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.33 E-value=0.8 Score=27.07 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=38.3
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEEC
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
+.|..++|+...+.+.|.+|+.++-..+.++.|+.++..-+...
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 45777899999999999999999999999999998887766544
No 115
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=91.69 E-value=0.23 Score=32.34 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=42.9
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCC---CCCCEEEEEEe
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI---QKESTLHLVLR 72 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi---~~g~~I~v~~~ 72 (116)
+-|+.+.||+++...|..+.+++++.+-|..++.+...+.+++++-- .++.-+++...
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys 105 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVR 105 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEc
Confidence 36999999999999999999999888655567766666777776521 23445666554
No 116
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=91.52 E-value=1.8 Score=34.02 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=54.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC--CCCCceEEEE----CCEE--cCCCCccccCCCCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIF----AGKQ--LEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~--i~~~~q~L~~----~g~~--L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|-+.+++..|. ..+++.++++.+.|-.+|-.-+. ..|+.+.+.- +|.. +..++++.++|++.|.++++-.
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 67888887775 77899999999988888877653 4666777663 3332 3457899999999999999876
No 117
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.26 E-value=0.51 Score=36.36 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=51.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCC-CCCceEEE--ECCEEcCC-CCccccCCCCCCCE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST 66 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i-~~~~q~L~--~~g~~L~d-~~tL~~~gi~~g~~ 66 (116)
.|.|+..+|......++...||.+++..|...-.- +...+.|+ |--+.|.| +.||++.|+.+...
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 47888899999999999999999999999987654 34455555 56777865 78999999876543
No 118
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=89.67 E-value=2 Score=25.50 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=41.5
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhC-CCCCc--eEEE----ECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQ--QRLI----FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~-i~~~~--q~L~----~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
+.|..-.+++.|+++|+..|.+++. +.|.. ..+. -.|-.|+.+..+++. ..++++|.++++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~n 71 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILKN 71 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEecC
Confidence 4566678899999999999999875 33332 2221 234456667777765 3467777777653
No 119
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=89.29 E-value=2.5 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=32.9
Q ss_pred EcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE
Q 033570 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 6 k~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~ 45 (116)
+-.+|++..+.|+.+.|..+|+.++.+.++++.. +.|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 4457888899999999999999999999998765 55555
No 120
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=1.7 Score=32.16 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=54.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC--C-CCccccCCCCCCCEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHL 69 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~--d-~~tL~~~gi~~g~~I~v 69 (116)
+|.|+.++|+++...+.+..++.+++.-|....+.......|. |--..+. | .++|..+++.+.+++.+
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 5789999999999999999999999999999988766566554 3344443 2 57899999988887644
No 121
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=88.91 E-value=3.8 Score=25.28 Aligned_cols=40 Identities=13% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCCEEEEEecC-----CCCHHHHHHHHHHhhCCCC-CceEEEECCE
Q 033570 9 TGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 48 (116)
Q Consensus 9 ~g~~~~i~v~~-----~~TV~~LK~~I~~~~~i~~-~~q~L~~~g~ 48 (116)
+|....|.++. +.+..+|+++|++.+++++ ....|.|...
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 55566677774 7999999999999999987 5778888543
No 122
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=88.74 E-value=0.77 Score=28.04 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=29.8
Q ss_pred EecC-CCCHHHHHHHHHH-hhCCCCCce----EEEECCEE----cCCCCccccCCCCCCCEEEEE
Q 033570 16 EVES-SDTIDNVKAKIQD-KEGIPPDQQ----RLIFAGKQ----LEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 16 ~v~~-~~TV~~LK~~I~~-~~~i~~~~q----~L~~~g~~----L~d~~tL~~~gi~~g~~I~v~ 70 (116)
.++. .+|+++|-+.|-+ +.|+....+ .++|.... -..+++|+++||.+|+.+.+.
T Consensus 3 ~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 3 KVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 6899999997654 677644333 34443332 112578999999999988764
No 123
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=88.62 E-value=3.4 Score=24.17 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=40.1
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCcccc
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 58 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~ 58 (116)
+.|.-++|+...+.+.|..||.+.-..+-++.++.++...+.. ..+.|+-+...+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~~ 60 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSSS 60 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCceee
Confidence 4567789999999999999999999999999999888766554 3445654444443
No 124
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=87.68 E-value=1.9 Score=35.97 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=37.7
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEc
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L 50 (116)
+...+.+.++++.|+..|+..|...+|+|.+.|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 456688999999999999999999999999999999987753
No 125
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=87.39 E-value=4.5 Score=24.39 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=41.0
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+..+.+.+++..||.++-+. .|+|..+..++ .+|+..+-+ +-+++|+.|.+...
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEec
Confidence 44577889999999988765 49998888665 699987554 44567999988754
No 126
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=87.11 E-value=1.6 Score=26.56 Aligned_cols=56 Identities=16% Similarity=0.294 Sum_probs=37.6
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCc-------eEEEECCE-EcC-----C-CCccccCCCCCCCEEEEEE
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-------QRLIFAGK-QLE-----D-GRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~-------q~L~~~g~-~L~-----d-~~tL~~~gi~~g~~I~v~~ 71 (116)
+++++++|+.+|.+.+.+.-.+.... -.|++.+- .|. + +++|.++ +.+|..|.|.=
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57899999999999999984433332 23433332 121 1 6789999 89999988753
No 127
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=87.08 E-value=4.1 Score=28.84 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=30.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCC---ceEEE--ECCEE---cCCCCccccC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGKQ---LEDGRTLADY 59 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~~~---~q~L~--~~g~~---L~d~~tL~~~ 59 (116)
.+.+-|+.+.||.+|.+.+.++.+++.+ .+++. ++++. +..+.+|.++
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 4778999999999999999999998655 45554 67774 5667788776
No 128
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=86.87 E-value=5.2 Score=24.46 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=41.0
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCce-EEE------ECCEEcCCCCcccc
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI------FAGKQLEDGRTLAD 58 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q-~L~------~~g~~L~d~~tL~~ 58 (116)
|.|-..+|....+.|+..+|++++-+.++.+.++....- .|+ .-.+.+.|+..|.+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 556677899999999999999999999999998765543 333 12334667665443
No 129
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=86.74 E-value=1.7 Score=28.31 Aligned_cols=57 Identities=19% Similarity=0.432 Sum_probs=39.4
Q ss_pred EecC-CCCHHHHHHHHHHhhC----CCC------CceEEEE----------------CC-EEc---CCCCccccCCCCCC
Q 033570 16 EVES-SDTIDNVKAKIQDKEG----IPP------DQQRLIF----------------AG-KQL---EDGRTLADYNIQKE 64 (116)
Q Consensus 16 ~v~~-~~TV~~LK~~I~~~~~----i~~------~~q~L~~----------------~g-~~L---~d~~tL~~~gi~~g 64 (116)
.|+. +.||.+|++.+.+... ++| +.++|.+ .. ..| +++.+|.++||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 5787 8999999999988753 332 2234432 12 356 67888999999998
Q ss_pred CEEEEEEe
Q 033570 65 STLHLVLR 72 (116)
Q Consensus 65 ~~I~v~~~ 72 (116)
..|.+..+
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 88866543
No 130
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=85.48 E-value=5.8 Score=23.66 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=48.8
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
.+.|+++......-.-.++++++|+..--++ -.|--+...++-+..-++.|+.+.+..|-+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 4688888888888888899999998866665 456667778888888889999988877644
No 131
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=84.87 E-value=6.1 Score=23.40 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=32.5
Q ss_pred EEEEcCCCC----EEEEEecCCCCHHHHHHHHHHhhCC--CCCceEEE
Q 033570 3 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 44 (116)
Q Consensus 3 v~Vk~~~g~----~~~i~v~~~~TV~~LK~~I~~~~~i--~~~~q~L~ 44 (116)
|.|-..++. ...+.|++++|+.++-..+.+++++ .+....|.
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 344444555 7789999999999999999999998 44456663
No 132
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.36 E-value=0.62 Score=36.88 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=49.8
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
.++.+.+.|-.+|...|++++|++-..++.+.+|++|.-.++|.+.|++......+++.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 45566677789999999999999988999999999999999999999987766555443
No 133
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=84.35 E-value=2.5 Score=27.11 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=40.8
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcCCCCccccC----CCCCCCEEEEEEe
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY----NIQKESTLHLVLR 72 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----gi~~g~~I~v~~~ 72 (116)
.+-|+.+.||+++...|..+.++.++. +-|..++.....+.+++++ +. ++..+++...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEEEe
Confidence 356999999999999999999987775 4455566544556777665 32 2456666544
No 134
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=83.67 E-value=2.6 Score=33.21 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=60.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcCC---CCccccCCCCCCCEEEEEEecCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~d---~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+|.|+.++|..+.=..+.+.-+..++..+.+.-++....+.|- |--++..+ +++|.++.+.+...+.|+.+..+.
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~r~t 395 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKKRAT 395 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecCCcc
Confidence 6889999999888888888888899999998877777776664 77777643 679999999999888887765443
No 135
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=83.65 E-value=3.7 Score=25.18 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=34.4
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEE-EECCEEc
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQL 50 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L-~~~g~~L 50 (116)
..+.|.|+++.|=.++|+.|++.+|+.+...+. .+.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 568999999999999999999999999888754 4777754
No 136
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=83.32 E-value=7.3 Score=23.09 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=29.2
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCC--CCceEEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 44 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~--~~~q~L~ 44 (116)
+....+.|+.++|..++-..+.+++++. +....|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667899999999999999999999986 4555554
No 137
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=83.14 E-value=4 Score=25.85 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=34.5
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcCCCCccccC
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~ 59 (116)
+-|+.+.||++|...|..+..++++. +-|..++.....+.++++.
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 45889999999999999999997664 5566688666778888765
No 138
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=82.14 E-value=9.2 Score=23.39 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=43.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhh-C--CC--CC-ceEEEECC--EEcCCCCccccCCCCCCCEEEEEEe
Q 033570 13 ITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~-~--i~--~~-~q~L~~~g--~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
..+.|+.++|+.++-++++.+. | ++ ++ ..++.++| ..+..+.++++.||.+-+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4578999999999999998864 4 32 33 45677888 8999999999999999999887653
No 139
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=82.01 E-value=6.2 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=33.9
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEE-EECCEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 49 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L-~~~g~~ 49 (116)
...+.|.|+++.|=.++|+.|++.+++++...+- ...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 4578999999999999999999999999988854 456554
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=2.3 Score=32.53 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=44.2
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCceEEEE---CCEEc-----CCCCccccCCCCCCCEEEEE
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL-----EDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~---~g~~L-----~d~~tL~~~gi~~g~~I~v~ 70 (116)
.-|+-.-||-+|+..+..+.|+.+.+++|.| .|+.- +...+|-.|.|.+|+.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3455566999999999999999999999987 44432 23667899999999988653
No 141
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=81.91 E-value=3.7 Score=33.31 Aligned_cols=64 Identities=36% Similarity=0.500 Sum_probs=42.3
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEE--EC--CE-EcCCC-------------CccccCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLI--FA--GK-QLEDG-------------RTLADYNIQKE 64 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~--~~--g~-~L~d~-------------~tL~~~gi~~g 64 (116)
..+.+.|-..+||.+.|++|-... +.| ++++-|. .+ |. +|.|. .||+.|+|.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 457889989999999999998763 222 3444443 22 33 56552 24899999999
Q ss_pred CEEEEEEecC
Q 033570 65 STLHLVLRLR 74 (116)
Q Consensus 65 ~~I~v~~~~~ 74 (116)
+++.++.+..
T Consensus 282 a~vaLv~k~~ 291 (539)
T PF08337_consen 282 ATVALVPKQH 291 (539)
T ss_dssp EEEEEEES--
T ss_pred ceEEEeeccc
Confidence 9999998864
No 142
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=81.48 E-value=9.2 Score=22.97 Aligned_cols=62 Identities=18% Similarity=0.381 Sum_probs=39.9
Q ss_pred EEcCC-CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 5 VKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 5 Vk~~~-g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.+.+ ...+-|.. .++.+|+.+..+.++++.+..+|+. .|..++|+.-...+ . ..++.|++.
T Consensus 7 v~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p-~nT~lm~L~ 71 (78)
T PF02017_consen 7 VRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL--P-DNTVLMLLE 71 (78)
T ss_dssp EEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS--S-SSEEEEEEE
T ss_pred EecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC--C-CCCEEEEEC
Confidence 44433 23344555 3799999999999999988888776 78888766443332 2 345545544
No 143
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=80.44 E-value=7.4 Score=24.01 Aligned_cols=56 Identities=14% Similarity=0.295 Sum_probs=35.0
Q ss_pred EecCCCCHHHHHHHHHHhhCCCCCceE-------------EEECCEEcCCCCcc--ccCCCCCCCEEEEEEecCCC
Q 033570 16 EVESSDTIDNVKAKIQDKEGIPPDQQR-------------LIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 16 ~v~~~~TV~~LK~~I~~~~~i~~~~q~-------------L~~~g~~L~d~~tL--~~~gi~~g~~I~v~~~~~gg 76 (116)
.+....||.+|-+.+.+.+. ..+.. ++.||+.. ..+ .++-+++|+.|.+.....||
T Consensus 24 ~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred cCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcCEEEEECCCCCC
Confidence 34356799999999988762 22222 22333321 122 24567889999999877765
No 144
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=79.80 E-value=2.5 Score=30.65 Aligned_cols=59 Identities=17% Similarity=0.402 Sum_probs=39.7
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCceEEEE----CCE--EcCCCCccccCCCCCCCEEEEEEec
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGK--QLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~----~g~--~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
+.|+.+.+|.+|-..|.+..|+|++.--++| .+. .++...++....+.+|+.|.+-...
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~ 153 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAP 153 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEecc
Confidence 5788899999999999999999887554444 233 4777999999999999999776654
No 145
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=79.44 E-value=2.9 Score=26.20 Aligned_cols=35 Identities=34% Similarity=0.676 Sum_probs=24.1
Q ss_pred EEEECCEEcCCCCccccC-CCCCCCEEEEEEecCCC
Q 033570 42 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRGG 76 (116)
Q Consensus 42 ~L~~~g~~L~d~~tL~~~-gi~~g~~I~v~~~~~gg 76 (116)
.|.+.|+.|..+.+|++| |-.+-+.|.|-+...|+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 578999999999999999 33344455555544443
No 146
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=78.75 E-value=12 Score=22.67 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=33.6
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~ 45 (116)
..++. +|....+..+.+-|-..|+++|...+.+|+...-+.|
T Consensus 3 fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 3 FKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred EEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 34444 5666677777788999999999999999988888877
No 147
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=78.68 E-value=10 Score=24.38 Aligned_cols=46 Identities=4% Similarity=0.199 Sum_probs=35.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcC--CCCcccc
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLAD 58 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~--d~~tL~~ 58 (116)
-.+.|++++|++.+...|....++++.++-++|=..-.. .++.++.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~ 94 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGN 94 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHH
Confidence 457899999999999999999999999988887555442 2444443
No 148
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=78.38 E-value=14 Score=23.17 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC-CceEEE-E-CCE--EcCC-CCc-------cccCCCCCCCEEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI-F-AGK--QLED-GRT-------LADYNIQKESTLHL 69 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-~~q~L~-~-~g~--~L~d-~~t-------L~~~gi~~g~~I~v 69 (116)
|.|=..++....+.++.+.||.++-..++.++.++. +..+|. . +|. +|.. +++ |...|-++.+-+..
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~ 84 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIED 84 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHH
Confidence 344444677778999999999999999999998865 444544 3 332 4543 433 44555555554443
Q ss_pred E
Q 033570 70 V 70 (116)
Q Consensus 70 ~ 70 (116)
+
T Consensus 85 l 85 (97)
T cd01775 85 I 85 (97)
T ss_pred h
Confidence 3
No 149
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=78.02 E-value=5.3 Score=23.39 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEE
Q 033570 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 21 ~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
.|+++|....++++|++ ...-+.-+|..++|=..+. +|+.+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~IR-----DgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVIR-----DGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEEE-----cCCEEEE
Confidence 59999999999999996 3333445666665544444 4777765
No 150
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=77.44 E-value=2.7 Score=29.80 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=21.9
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCC
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~ 39 (116)
|-.|.+.|.+.+|..++|++|.+++|++-.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 556888999999999999999999998643
No 151
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=77.40 E-value=8.6 Score=23.62 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=35.6
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCce
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q 41 (116)
++.|--++|....+.+..+++..++=+.+..+.|+|.+-+
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 5677788999999999999999999999999999987644
No 152
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=76.88 E-value=9.4 Score=22.81 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=30.6
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
..+.|.|+++.+=.++|+.|+..+++.+...+.+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5789999999999999999999999988877654
No 153
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=76.23 E-value=8.5 Score=27.90 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=31.1
Q ss_pred EEEEEcC---CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 2 QIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 2 ~v~Vk~~---~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
.|.++.. .+..+.+.++..+|-.+|-+.|+++++++|..++|.
T Consensus 178 ~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 178 EVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 3445443 244689999999999999999999999999999886
No 154
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=75.80 E-value=17 Score=22.88 Aligned_cols=70 Identities=29% Similarity=0.326 Sum_probs=45.2
Q ss_pred EEEEcCC-CCEEEEEecCCCCHHHHHHHHHHhh----C--CCCC-ceEEEECCEE--cCCCCccccCC-----CCCCCEE
Q 033570 3 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTL 67 (116)
Q Consensus 3 v~Vk~~~-g~~~~i~v~~~~TV~~LK~~I~~~~----~--i~~~-~q~L~~~g~~--L~d~~tL~~~g-----i~~g~~I 67 (116)
|.|...+ ...+.+.++++.|+.+|.+.+-.+. + -+++ +..|.-.|+. |..+..|.+|. ++.|..+
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~ 99 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREP 99 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCc
Confidence 3444433 3558899999999999888776652 1 1222 5666667763 55666777763 4667777
Q ss_pred EEEEe
Q 033570 68 HLVLR 72 (116)
Q Consensus 68 ~v~~~ 72 (116)
++++.
T Consensus 100 ~L~L~ 104 (108)
T smart00144 100 HLVLM 104 (108)
T ss_pred eEEEE
Confidence 77654
No 155
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=75.72 E-value=14 Score=21.97 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=34.9
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCC--CceEEE--E-CC--EEcCC-CCccc
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI--F-AG--KQLED-GRTLA 57 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~--~~q~L~--~-~g--~~L~d-~~tL~ 57 (116)
+....+.|++++|+.++-..+.++++++. ....|+ . +| +.|.+ +.++.
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~Pl~ 70 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENPLQ 70 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcceE
Confidence 66678999999999999999999999864 455554 3 44 24554 44443
No 156
>PRK01777 hypothetical protein; Validated
Probab=75.52 E-value=17 Score=22.59 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=36.9
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCC--c-----eEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~--~-----q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
..+++++..||.++-..+ |++.. . -.+..+|+...-+..| ++|+.|.+.-.+
T Consensus 19 ~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~~L-----~dGDRVeIyrPL 77 (95)
T PRK01777 19 QRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTDVL-----RDGDRVEIYRPL 77 (95)
T ss_pred EEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCCcC-----CCCCEEEEecCC
Confidence 567899999999876665 55443 2 3566788877655554 569999988665
No 157
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=74.96 E-value=14 Score=22.52 Aligned_cols=44 Identities=27% Similarity=0.264 Sum_probs=33.5
Q ss_pred CCE-EEEEecCCCCHHHHHHHHHHhhCC-CCCceEEE--ECCE--EcCCC
Q 033570 10 GKT-ITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGK--QLEDG 53 (116)
Q Consensus 10 g~~-~~i~v~~~~TV~~LK~~I~~~~~i-~~~~q~L~--~~g~--~L~d~ 53 (116)
|.. -.+.|.|+.|+.++-..+++++.+ .|+...|. .+|. .|.|+
T Consensus 12 gct~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 12 GCTGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred CceeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 433 568999999999999999999998 56766554 3554 46654
No 158
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=74.54 E-value=8.7 Score=23.43 Aligned_cols=59 Identities=5% Similarity=0.113 Sum_probs=39.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEc-CCCCccccCC--CCCCCEEEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQL-EDGRTLADYN--IQKESTLHLVL 71 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L-~d~~tL~~~g--i~~g~~I~v~~ 71 (116)
-.+-|+.+.|++++...|.++.++.+++ +-|..+...+ ..+.+++++- -.++..+++..
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~Y 80 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVSY 80 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEEE
Confidence 3467999999999999999999987665 4444555423 3455655441 13455665554
No 159
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.31 E-value=12 Score=22.72 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=30.7
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
..+.|.|+++.+=.++|+.|+..+++.+...+.+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 5799999999999999999999999998887654
No 160
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=73.67 E-value=16 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCcccc
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 58 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~ 58 (116)
|..+|+.+..+.++++....+|+. .|..++|+.=...
T Consensus 20 sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 20 SLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 799999999999999866666653 8999977544443
No 161
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=72.44 E-value=18 Score=21.76 Aligned_cols=46 Identities=11% Similarity=0.171 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhhCCCCCceEEE--ECCEEcCCCCccccCCCCCCCEEEE
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
+..+|+.+..+.++++.+..+|+ =.|..++++.=...+ .+++.+.+
T Consensus 22 sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~L--pdnT~lm~ 69 (78)
T cd06539 22 SLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTL--GDNTHFMV 69 (78)
T ss_pred CHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhC--CCCCEEEE
Confidence 79999999999999986655554 478888775444332 33444433
No 162
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=72.33 E-value=12 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEE-EECC
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAG 47 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L-~~~g 47 (116)
...+.|.|+++.|=.++|+.+++.+++-+..... ...|
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 3578999999999999999999999998887754 3444
No 163
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=71.95 E-value=21 Score=22.15 Aligned_cols=70 Identities=23% Similarity=0.424 Sum_probs=42.4
Q ss_pred EEEEEcC-CCCEEEEEecCCCCHHHHHHHHHHhh--CCCC---C-ceEEEECCEE--cCCCCccccCC-----CCCCCEE
Q 033570 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPP---D-QQRLIFAGKQ--LEDGRTLADYN-----IQKESTL 67 (116)
Q Consensus 2 ~v~Vk~~-~g~~~~i~v~~~~TV~~LK~~I~~~~--~i~~---~-~q~L~~~g~~--L~d~~tL~~~g-----i~~g~~I 67 (116)
.|.|... .+..+.+.++.+.|+.+|...+..+. +..+ . +.-|...|.. |..+.+|.+|. +..+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 4566666 45668899999999999888877662 2221 2 5667677763 55777888873 3455555
Q ss_pred EEEE
Q 033570 68 HLVL 71 (116)
Q Consensus 68 ~v~~ 71 (116)
++++
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 164
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=71.32 E-value=20 Score=21.57 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhhCCCCCceEEE--ECCEEcCCCCcccc
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 58 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~d~~tL~~ 58 (116)
|..+|+.+..++++++....+|+ -.|..++|+.=...
T Consensus 22 sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 22 SLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc
Confidence 79999999999999976666665 47999877543333
No 165
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=70.98 E-value=19 Score=21.34 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=42.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCEEcCCCCccccCCCCCCCEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
..+.|+++......-+..++++.+|+..--++ -.|--+...++.++.-++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 45789999888888888999999988766655 4677788888888877777887754
No 166
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=70.30 E-value=7.7 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.6
Q ss_pred EEEEecCCCCHHHHHHHHHHhhC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEG 35 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~ 35 (116)
+.++++.+.|+.++|+.+.++..
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 46889999999999999987643
No 167
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=70.22 E-value=2.1 Score=32.49 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=41.5
Q ss_pred CCCCEEEEEec-CCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCcc
Q 033570 8 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (116)
Q Consensus 8 ~~g~~~~i~v~-~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL 56 (116)
.+|+...+.+. ....+..||.++....+++++.|++.+.|..|.|..++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 36777777777 57789999999999999999999999999999887443
No 168
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.60 E-value=22 Score=21.08 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=37.4
Q ss_pred EEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
|--++|+...+.+.|..||.+.-..+.++.|+.++...+..-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44678999999999999999999999999999888777765443
No 169
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=68.52 E-value=23 Score=21.23 Aligned_cols=38 Identities=5% Similarity=0.111 Sum_probs=33.0
Q ss_pred EEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceE
Q 033570 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (116)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~ 42 (116)
|-.++|+...+.|.|++|+.++-+....+.++.|..--
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~ 41 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHY 41 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhe
Confidence 55678999999999999999999999999999877543
No 170
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=6.3 Score=30.24 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.0
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhh-CCCCCceEEEECC---EEcC--CCCccccCCCCCCCE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 66 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~-~i~~~~q~L~~~g---~~L~--d~~tL~~~gi~~g~~ 66 (116)
.|.||.++|+......-+.++|..|=..+..+. |.+-++++|+..- +.|+ .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 478899999887777777889988877777665 4666788888655 5554 378999999988765
No 171
>CHL00030 rpl23 ribosomal protein L23
Probab=68.02 E-value=18 Score=22.44 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~ 48 (116)
...+.|.|+++.|=.++|+.|+..+++.+.....+ ..|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 46799999999999999999999999988777543 4444
No 172
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=67.30 E-value=30 Score=22.17 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCEE--EEEecCCCCHHHHHHHHHHhhCCC
Q 033570 1 MQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEGIP 37 (116)
Q Consensus 1 m~v~Vk~~~g~~~--~i~v~~~~TV~~LK~~I~~~~~i~ 37 (116)
|+......+++.. .+.|+.++|+.++.+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 6777777665543 489999999999999999999854
No 173
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=67.04 E-value=35 Score=25.12 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCC--CCccccCCCCCCCEEEEEEecCC
Q 033570 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 19 ~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
-++|+..|...+++-+...+..|.|.|.|-+... +.+|.++.+.+|-.+.-+-....
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL~vGDgLRl~~aad~k~ 197 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQLRVGDGLRLYHAADSKE 197 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEeecCCcEEEEeeccccc
Confidence 3789999999999999999999999999987653 56777776666666665544433
No 174
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.87 E-value=13 Score=31.51 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=42.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE----CCEEc--CCCCccccCCCCCCCEEEEE
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~----~g~~L--~d~~tL~~~gi~~g~~I~v~ 70 (116)
-+.+.|+..+++..+|++|++..+++.+.+++.- +|..+ .+..+|+.+ .++.+|.+-
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~ 940 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIK 940 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEE
Confidence 3678999999999999999999999999998873 34433 345667654 455665544
No 175
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=65.72 E-value=19 Score=31.11 Aligned_cols=62 Identities=18% Similarity=0.387 Sum_probs=46.5
Q ss_pred CCCEEEEEecC-CCCHHHHHHHHHHhhCCCCCceEEEE-CCEEcCCCCccccCC-C-CCCCEEEEE
Q 033570 9 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN-I-QKESTLHLV 70 (116)
Q Consensus 9 ~g~~~~i~v~~-~~TV~~LK~~I~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~g-i-~~g~~I~v~ 70 (116)
.|+...++... ..|+.+||.+|..+.|+....+.++- +|..+..++.|..|. . ++.+-|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 46777887766 57899999999999999999998875 455666788888876 2 233445554
No 176
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=62.25 E-value=31 Score=20.46 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.5
Q ss_pred EEEEecC-CCCHHHHHHHHHHhhCC
Q 033570 13 ITLEVES-SDTIDNVKAKIQDKEGI 36 (116)
Q Consensus 13 ~~i~v~~-~~TV~~LK~~I~~~~~i 36 (116)
-.+.++. ..+|.+||..|.++.++
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCC
Confidence 4567776 57899999999888766
No 177
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=61.59 E-value=13 Score=22.29 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEecCCCCHHHHHHHHHHhhC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEG 35 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~ 35 (116)
+.+.++.+.|+.++|+.+.+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46789999999999999988743
No 178
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=61.13 E-value=10 Score=25.33 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=24.8
Q ss_pred CEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 47 GKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 47 g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
-+..+|+++|++.+++-|+-|.|.+..+..
T Consensus 111 ~Kg~ddnktL~~~kf~iGD~lDVaI~~p~~ 140 (151)
T KOG3391|consen 111 RKGIDDNKTLQQTKFEIGDYLDVAITPPNR 140 (151)
T ss_pred cccCCccchhhhCCccccceEEEEecCccc
Confidence 345678999999999999999999986543
No 179
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=59.52 E-value=35 Score=20.28 Aligned_cols=47 Identities=6% Similarity=0.136 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
..++..++..+|.+.+..++.++..-=.-...+...-+.-|..|++-
T Consensus 4 ~~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f~ 50 (79)
T PF13699_consen 4 ESIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYFA 50 (79)
T ss_pred HHHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEEc
Confidence 35889999999999999999887443222334555556778888873
No 180
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=59.09 E-value=30 Score=23.61 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=33.5
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 49 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~~ 49 (116)
...+.|.|+++.+=.++|..|+..+++.+..++.+ ..|+.
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~ 62 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKP 62 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcc
Confidence 35799999999999999999999999998888654 45543
No 181
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=57.31 E-value=39 Score=20.14 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHhhC---CCCCceE--EEECCEEcCC-CCccccCCCCCCCEEEEEEecCCC
Q 033570 20 SDTIDNVKAKIQDKEG---IPPDQQR--LIFAGKQLED-GRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 20 ~~TV~~LK~~I~~~~~---i~~~~q~--L~~~g~~L~d-~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
-.|+++|.+.+.++.. ..-.... ...+...+.+ +.. +++|+.|.+.....||
T Consensus 27 ~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~~t~-----L~dGDeVa~~PPVsGG 84 (84)
T COG1977 27 GATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGLDTP-----LKDGDEVAFFPPVSGG 84 (84)
T ss_pred HHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeecccccc-----CCCCCEEEEeCCCCCC
Confidence 5789999999877664 2212111 1223333433 333 5569999999888776
No 182
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=54.18 E-value=37 Score=18.86 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=38.1
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|.|..++|+... ++...|+.++-..|....+-. -.--..+|+..+-+..|. +|++|.++
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~--~~~A~Vng~~vdl~~~L~-----~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKR--AVAAKVNGQLVDLDHPLE-----DGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHC--EEEEEETTEEEETTSBB------SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhh--eeEEEEcCEECCCCCCcC-----CCCEEEEE
Confidence 455668887665 677789999999998776321 122336887765555555 47777654
No 183
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=52.22 E-value=12 Score=28.55 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=38.5
Q ss_pred EEEecCCCCHHHHHHHHHHhhC-C-CCCceEEEECCEEcCCCCccccC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~-i-~~~~q~L~~~g~~L~d~~tL~~~ 59 (116)
.+.++...||.+||.-+..+++ . +..++-+++++..|.++.||.+.
T Consensus 167 fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 167 FLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred eEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 4678888999999999999998 3 44567888999999999998854
No 184
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=51.44 E-value=52 Score=19.80 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHhhCCCCC-ceEEEECCEEcCCCCcccc
Q 033570 22 TIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLAD 58 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~-~q~L~~~g~~L~d~~tL~~ 58 (116)
+..+|+.+..+.++++.. .+.|.-.|..++|+.=...
T Consensus 22 sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~t 59 (79)
T cd06538 22 SLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQA 59 (79)
T ss_pred CHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhh
Confidence 799999999999999532 2334458888877544433
No 185
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=49.72 E-value=57 Score=19.70 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHhhCCCCC--ceEEE--ECCEEcCCCCcccc
Q 033570 22 TIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLAD 58 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~--~q~L~--~~g~~L~d~~tL~~ 58 (116)
|..+|+.+..+.++++.. ..+|+ -.|..++|+.=...
T Consensus 22 sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t 62 (80)
T cd06536 22 SLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC 62 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh
Confidence 799999999999999833 35554 48999877544443
No 186
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=49.54 E-value=50 Score=22.24 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=30.5
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
...+.|.|+...+=.++|+.|+..+++.+.....+
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 116 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTL 116 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeE
Confidence 35799999999999999999999999988777543
No 187
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=49.13 E-value=59 Score=19.75 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=30.5
Q ss_pred EEEEecCCCCHHHHHHH--HHHhh-CCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 13 ITLEVESSDTIDNVKAK--IQDKE-GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~--I~~~~-~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
..++++..+||.+=-+. |.+.+ .+..+..++-..|+....+..|. +|+.|.+.-.+
T Consensus 16 ~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~-----~GDRVEIYRPL 74 (84)
T PF03658_consen 16 LTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLR-----DGDRVEIYRPL 74 (84)
T ss_dssp EEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B-------TT-EEEEE-S-
T ss_pred EEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCC-----CCCEEEEeccC
Confidence 56899999999884432 33333 46667788888888776555555 59999887543
No 188
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=48.66 E-value=68 Score=22.82 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=49.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC--CCCCceEE-EECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRL-IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~--i~~~~q~L-~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
.|.+++..|.....++..+.....|-..++.... ...+...+ -.+|-+|+....+. .+-..++.+.|-.+..
T Consensus 151 kv~~~He~G~~~r~Dl~~~~~~~~i~~~~a~~~~~~~~~~~~~~~G~SG~vl~~~~~~~-~~~~~~~~FIVRGr~~ 225 (245)
T PF01577_consen 151 KVETKHERGKRKRRDLNIDEFTESILRLLAKKTYRGRIVDDIKIKGDSGLVLPRRKLIG-FGRTRDDFFIVRGRHE 225 (245)
T ss_pred EEECCccCCCcccEECCccHHHHHHHHHHHhhcCCCcccccceeccceEEEEeCCcccC-ccccCCCeEEEEeccC
Confidence 3555666788777888888888888888887643 45556667 34566777766666 7777777666666644
No 189
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=46.72 E-value=54 Score=18.58 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=35.8
Q ss_pred EEEEEcCCCC----EEEEEecCCCCHHHHHHHHHHhh-C-CCCCceEEEECCEEcCC
Q 033570 2 QIFVKTLTGK----TITLEVESSDTIDNVKAKIQDKE-G-IPPDQQRLIFAGKQLED 52 (116)
Q Consensus 2 ~v~Vk~~~g~----~~~i~v~~~~TV~~LK~~I~~~~-~-i~~~~q~L~~~g~~L~d 52 (116)
+|...+..++ .-.+.|+.+.|..+|-..+.+-. . -.+-...+..+|..|.+
T Consensus 3 ~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 3 QVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeec
Confidence 3444554452 24588999999999999999987 2 34446678888887654
No 190
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=45.94 E-value=8.3 Score=22.33 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHhhCCCCCce
Q 033570 22 TIDNVKAKIQDKEGIPPDQQ 41 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q 41 (116)
|+.++.+.+++.+|++++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~i 20 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVEDI 20 (70)
T ss_dssp -HHHHHHHHHHHTT--HHHH
T ss_pred CHHHHHHHHHHHHCCCHHHH
Confidence 68889999999999886654
No 191
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=45.92 E-value=76 Score=20.06 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.8
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~ 38 (116)
|+|-..+|++..+.|..-.+-.+++.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677899999999999999999999999999875
No 192
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=45.46 E-value=18 Score=23.27 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHH
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I 30 (116)
|+|.|.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7888877 5888999999998888887776
No 193
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=44.14 E-value=17 Score=21.84 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=19.9
Q ss_pred HHHHhhCCCCCceEEE---ECCEEcCCCCccccCCCCC
Q 033570 29 KIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQK 63 (116)
Q Consensus 29 ~I~~~~~i~~~~q~L~---~~g~~L~d~~tL~~~gi~~ 63 (116)
.|.++-.+.|+...|+ ..+.+|+-+++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 3566667777777777 3566898899999999975
No 194
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.84 E-value=80 Score=19.73 Aligned_cols=57 Identities=25% Similarity=0.339 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHhhCCCCCceEEEECCEE------c-CC-CCc---cccCCCCCCCEEEEEEecCCC
Q 033570 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ------L-ED-GRT---LADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 19 ~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~------L-~d-~~t---L~~~gi~~g~~I~v~~~~~gg 76 (116)
..+||++|-..|...+--.+++ -++.+|.+ | .| ++. =.+|.+++|+.|.++...-||
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEeccCC
Confidence 3578999999998865332233 34455542 2 22 333 247889999999998887765
No 195
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=43.60 E-value=39 Score=21.78 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=33.5
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCEEcCCCCcccc
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLAD 58 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~~L~d~~tL~~ 58 (116)
.+-|+.+.||++|-..|..++.+.++.--++ -++.......+.++
T Consensus 48 KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~ 93 (116)
T KOG1654|consen 48 KYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSA 93 (116)
T ss_pred eeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHH
Confidence 4568889999999999999999988866554 46665554444444
No 196
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.65 E-value=29 Score=22.32 Aligned_cols=55 Identities=18% Similarity=0.368 Sum_probs=34.0
Q ss_pred EecC-CCCHHHHHHHHHHhhCC----CCCc------------------eEEE----ECC-EEcC-CCCccccCCCCCCCE
Q 033570 16 EVES-SDTIDNVKAKIQDKEGI----PPDQ------------------QRLI----FAG-KQLE-DGRTLADYNIQKEST 66 (116)
Q Consensus 16 ~v~~-~~TV~~LK~~I~~~~~i----~~~~------------------q~L~----~~g-~~L~-d~~tL~~~gi~~g~~ 66 (116)
+++. +.||.+++.-+.+.+.. +|=+ +.|+ +.. ..|+ ++++|..+||.+...
T Consensus 28 d~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETE 107 (127)
T KOG4147|consen 28 DVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETE 107 (127)
T ss_pred ccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchh
Confidence 5665 77999988888776543 2211 1122 222 3565 477899999988766
Q ss_pred EEEE
Q 033570 67 LHLV 70 (116)
Q Consensus 67 I~v~ 70 (116)
|.+.
T Consensus 108 is~F 111 (127)
T KOG4147|consen 108 ISFF 111 (127)
T ss_pred hhhh
Confidence 6443
No 197
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=41.26 E-value=61 Score=18.70 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=37.2
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccC--CCCCCCEEEEEEec
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRL 73 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~--gi~~g~~I~v~~~~ 73 (116)
......|.++. -+++.|+.+.++-+..+|+.+.+...+..+ ....|+++.+.+.-
T Consensus 15 g~~V~~V~~~s--------pA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 15 GVVVVSVIPGS--------PAAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp SEEEEEESTTS--------HHHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred eEEEEEeCCCC--------cHHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 34445566554 245668889999999999999664444333 45788998888764
No 198
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=41.20 E-value=82 Score=19.14 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=32.3
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEEECCE
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGK 48 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~~~g~ 48 (116)
+|......++++.|..+|.+++.+......+ .+++.|-..
T Consensus 8 ~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DE 48 (83)
T cd06404 8 NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDE 48 (83)
T ss_pred cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 6778888999999999999999999988654 556666433
No 199
>KOG0009 consensus Ubiquitin-like/40S ribosomal S30 protein fusion [Translation, ribosomal structure and biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=41.05 E-value=7.3 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=10.3
Q ss_pred CCCCCchHHHHHHcCCCc
Q 033570 76 GIIEPSLMALARKYNQDK 93 (116)
Q Consensus 76 g~~~~~~~~~~~~~~~~~ 93 (116)
|++|++.+.++...+|.+
T Consensus 2 gkvhgslarAGKVr~QTP 19 (62)
T KOG0009|consen 2 GKVHGSLARAGKVRGQTP 19 (62)
T ss_pred CceeeehhhcccccccCC
Confidence 556666666665554443
No 200
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=41.03 E-value=44 Score=20.36 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHh
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~ 33 (116)
++|...+|.+|.++|+.+.-+..-|..|+..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 4566678999999999988776666666543
No 201
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=41.02 E-value=16 Score=20.26 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhhCCCCCce
Q 033570 22 TIDNVKAKIQDKEGIPPDQQ 41 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q 41 (116)
|+.++.+.+++.+|++++++
T Consensus 1 ~~~~I~~~Va~~~~i~~~~i 20 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPEDL 20 (60)
T ss_pred CHHHHHHHHHHHhCCCHHHH
Confidence 57889999999999987664
No 202
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=40.96 E-value=1.1e+02 Score=23.09 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=43.1
Q ss_pred EEecCCCCHHHHHHHHHHhh--------------C-CCCCceEEEECCEEcCCCCccccC---CCCCCCEEEEEEec
Q 033570 15 LEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADY---NIQKESTLHLVLRL 73 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~--------------~-i~~~~q~L~~~g~~L~d~~tL~~~---gi~~g~~I~v~~~~ 73 (116)
+..+.-.-|..+...|++++ . -|.+.+.|.-+|.+|+.+.+|+.. -.+.+.-|.+..|.
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 44444456888888999888 2 244567889999999999887754 45778888777764
No 203
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=40.49 E-value=79 Score=19.32 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=28.9
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE-CCEEc-CCCCccccC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLADY 59 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~-~g~~L-~d~~tL~~~ 59 (116)
-.+.|+++.|++.+-.-|.++.++.+.+.-.+| +..-- ..|.+++++
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L 66 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDL 66 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHH
T ss_pred cEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHH
Confidence 457899999999999999999998666554444 44322 235565554
No 204
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.21 E-value=83 Score=18.91 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=45.0
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCceEEEEC-CEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~-g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
++|++......+-+--++++.+|+..--++-+ |--+...++-+..-++.|+.+.+..|-.-|
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 46666666666666778889999887766654 555666778888888899998888765433
No 205
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=39.14 E-value=26 Score=19.52 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHH
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~ 32 (116)
|.|.+.+.+|+.|.++...-.--.-|+..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67899999999988875543334445666653
No 206
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=38.02 E-value=19 Score=15.39 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=7.1
Q ss_pred Ccccccccccc
Q 033570 92 DKMICRKSHTR 102 (116)
Q Consensus 92 ~~~~c~~~~~~ 102 (116)
+++-|+..|=.
T Consensus 3 ~k~~CknffWK 13 (18)
T PF03002_consen 3 RKAGCKNFFWK 13 (18)
T ss_pred ccccccceeec
Confidence 44558877765
No 207
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.90 E-value=94 Score=18.82 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhhCCCCCceEEE--ECCEEcCCCCcccc
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLAD 58 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~d~~tL~~ 58 (116)
+..+|+.+..+.++++. ..+|+ =.|..++++.=...
T Consensus 22 sL~EL~~K~~~~L~~~~-~~~lvLeeDGT~Vd~EeyF~t 59 (81)
T cd06537 22 SLQELLAKALETLLLSG-VLTLVLEEDGTAVDSEDFFEL 59 (81)
T ss_pred CHHHHHHHHHHHhCCCC-ceEEEEecCCCEEccHHHHhh
Confidence 79999999999999863 35544 47888877544443
No 208
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=37.60 E-value=64 Score=26.35 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=35.8
Q ss_pred EEEEecC-CCCHHHHHHHHHH-hhCCCCCceEEEECCEEcC-------CCCccccCCCCCCCEEEEE
Q 033570 13 ITLEVES-SDTIDNVKAKIQD-KEGIPPDQQRLIFAGKQLE-------DGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 13 ~~i~v~~-~~TV~~LK~~I~~-~~~i~~~~q~L~~~g~~L~-------d~~tL~~~gi~~g~~I~v~ 70 (116)
..+.++. ..|+.+|-..|-. ++++.| .+.|.+ .+++. .+++|+++||.+|+.|.+.
T Consensus 445 ~~l~ln~~~~~~~~L~D~ivk~r~~~~p-dvsll~-~~Li~~~d~e~n~~k~lsel~i~ngsli~~~ 509 (603)
T KOG2013|consen 445 LVLELNTRKSTLRDLVDKIVKTRLGYLP-DVSLLD-DDLIDDMDFEDNLDKTLSELGILNGSLINVK 509 (603)
T ss_pred eEEEeccccchHHHHHHHHHHHHhccCc-ccchhh-hhhcccccchhhhhhhHHhhCCCCCceEeee
Confidence 3455544 4678888877755 567644 555544 22222 2689999999999966553
No 209
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=37.34 E-value=1.1e+02 Score=19.35 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHhhCC---CCCceEEEECCEEcCCCC-ccccCCCCCCCEEEEEEecCCC
Q 033570 18 ESSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 18 ~~~~TV~~LK~~I~~~~~i---~~~~q~L~~~g~~L~d~~-tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.+..|+.++-+.+.+..++ .+-....++.|..+.... .|-.+.+..+ .+.+.+|...-
T Consensus 28 ~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~-~l~l~vrs~~~ 89 (104)
T PF14807_consen 28 SSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG-TLDLWVRSSDS 89 (104)
T ss_pred cCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC-eEEEEEEcCCC
Confidence 4567888888888888775 233447788899887766 7888888777 88888886543
No 210
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=36.78 E-value=1.1e+02 Score=19.19 Aligned_cols=32 Identities=25% Similarity=0.494 Sum_probs=25.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCC---CCceEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI 44 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~---~~~q~L~ 44 (116)
..+.|+.++|+.++-...-+++|+. +++..|+
T Consensus 19 ~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 19 VSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred EEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 4688999999999999999999974 4555554
No 211
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=36.06 E-value=46 Score=21.11 Aligned_cols=27 Identities=26% Similarity=0.634 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCCCCceEEEECCEEcC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~g~~L~ 51 (116)
...++.+.+ +|+++++..++++|-.++
T Consensus 148 ~~~~~~l~~-~~~~~~ki~vI~ngid~~ 174 (177)
T PF13439_consen 148 ESTKDELIK-FGIPPEKIHVIYNGIDTD 174 (177)
T ss_dssp HHHHHHHHH-HT--SS-EEE----B-CC
T ss_pred HHHHHHHHH-hCCcccCCEEEECCccHH
Confidence 357778888 899999999999997654
No 212
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=33.91 E-value=58 Score=27.04 Aligned_cols=37 Identities=19% Similarity=0.410 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCEEEE--EecCC-------CCHHHHHHHHHHhhCCC
Q 033570 1 MQIFVKTLTGKTITL--EVESS-------DTIDNVKAKIQDKEGIP 37 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i--~v~~~-------~TV~~LK~~I~~~~~i~ 37 (116)
+.|+|+..+|++..+ ..++. .|+++||..|++++|+.
T Consensus 249 ~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~ 294 (603)
T PRK05841 249 LNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLD 294 (603)
T ss_pred EEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccc
Confidence 357788887877554 44411 36899999999998864
No 213
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=33.58 E-value=54 Score=20.57 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEC
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
...|-+.+++++|+|++++-+.|.
T Consensus 76 s~~i~~~l~~~LgIp~~Riyi~f~ 99 (114)
T PF01187_consen 76 SAAITEFLEEELGIPPDRIYINFH 99 (114)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCceEEEEE
Confidence 456777888999999999988764
No 214
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=32.76 E-value=1.1e+02 Score=18.01 Aligned_cols=65 Identities=11% Similarity=0.180 Sum_probs=36.3
Q ss_pred CEEEEEcCCCCE---EEEEecCCCCHHHHHHHHHHhhCC--CCCce---EEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKT---ITLEVESSDTIDNVKAKIQDKEGI--PPDQQ---RLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~---~~i~v~~~~TV~~LK~~I~~~~~i--~~~~q---~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|.-|..++.. -.+.+....||.++-.+|....+- .-... ..-++|+...-+.. +.++++|.++
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~-----L~d~DvVeI~ 74 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHV-----LEDEDVVQIV 74 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCE-----ecCCCEEEEe
Confidence 345555544322 347788899999999998865421 11111 11145555444444 4458887764
No 215
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=30.73 E-value=90 Score=21.13 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~ 39 (116)
..|.|+.+.|+.+|-..|...++..-.
T Consensus 20 Rri~Vp~~~tl~~Lh~~Iq~afgw~~~ 46 (179)
T PF07929_consen 20 RRIEVPADITLADLHEVIQAAFGWDDD 46 (179)
T ss_dssp EEEEEETT-BHHHHHHHHHHHTT----
T ss_pred EEEEECCCCCHHHHHHHHHHHhCcCCC
Confidence 468999999999999999999987543
No 216
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=30.50 E-value=77 Score=21.61 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=21.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 35 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~ 35 (116)
.++++...++.+.+.++.+. +-||| .|.+.+|
T Consensus 47 nLfLkdkK~q~~lv~~~e~~-~vDLk-~ih~~IG 78 (164)
T COG3760 47 NLFLKDKKDQFFLVTVDEDA-VVDLK-SIHETIG 78 (164)
T ss_pred eeEeecCCCCEEEEEecccc-eecHH-HHHHHhc
Confidence 46788888887888888664 55676 4555554
No 217
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=30.06 E-value=76 Score=20.56 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=34.7
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCC-C-C-C--ceEEE-----------------ECCEE-cCCCCccccCCCCCCCEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGI-P-P-D--QQRLI-----------------FAGKQ-LEDGRTLADYNIQKESTL 67 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i-~-~-~--~q~L~-----------------~~g~~-L~d~~tL~~~gi~~g~~I 67 (116)
..+.|..=.+.|+.+|-..|.+..-- + + . .++++ +.|.. -+|+++|++++...|+-|
T Consensus 37 ~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGDyi 116 (120)
T PF06487_consen 37 NELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGDYI 116 (120)
T ss_dssp TEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-EE
T ss_pred CeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCCEE
Confidence 35667777889999988888774210 0 0 0 12222 23333 356899999999999998
Q ss_pred EEEE
Q 033570 68 HLVL 71 (116)
Q Consensus 68 ~v~~ 71 (116)
.+.+
T Consensus 117 dvaI 120 (120)
T PF06487_consen 117 DVAI 120 (120)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8764
No 218
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=29.53 E-value=1.8e+02 Score=19.56 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=38.5
Q ss_pred CEEEEEcCCCCEEEEEecC-CCCHHHHHHHHHHhh----CCCCCce----EEEE-CCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKE----GIPPDQQ----RLIF-AGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~-~~TV~~LK~~I~~~~----~i~~~~q----~L~~-~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|+|.. +...+.+.+.. +.||.+|-++-..++ +..++.. .|.+ .|-+|+.+..|.+.- .+.+.|..+
T Consensus 1 mkvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~~~v~V~~l~~~dggiLd~DD~l~dV~-dd~d~liAv 78 (145)
T PF12053_consen 1 MKVTVCF-GRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPDYWVVVHHLEYTDGGILDPDDVLCDVV-DDRDQLIAV 78 (145)
T ss_dssp -EEEEEE-TTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TTS-EEEEEEE-SSS-EE-TTS-HHHHS--TTEEEEEE
T ss_pred CeEEEEe-CCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCCceEEEeeEEecCCceeccccceeEec-cChhhhhee
Confidence 8999988 44556777764 699999877766554 2333332 2332 566887777777653 366677766
Q ss_pred Eec
Q 033570 71 LRL 73 (116)
Q Consensus 71 ~~~ 73 (116)
...
T Consensus 79 ydE 81 (145)
T PF12053_consen 79 YDE 81 (145)
T ss_dssp EEE
T ss_pred ecc
Confidence 654
No 219
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=28.47 E-value=1.5e+02 Score=18.23 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.1
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCC
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~ 39 (116)
|....+.|+.++|+.++.+.+-+++.+.-.
T Consensus 12 gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~ 41 (87)
T cd01784 12 GSVTNVRINSTMTTPQVLKLLLNKFKIENS 41 (87)
T ss_pred CceeEEEEecCCCHHHHHHHHHHhccccCC
Confidence 677789999999999999999999987533
No 220
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=27.93 E-value=1.1e+02 Score=19.17 Aligned_cols=23 Identities=4% Similarity=0.153 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhCCCCCceEEEEC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
..|-+.+++..|+|++++-+.|.
T Consensus 79 ~~i~~~l~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 79 AAITKILASHLKVKSERVYIEFK 101 (116)
T ss_pred HHHHHHHHHHhCcCcccEEEEEE
Confidence 44556667778999999988763
No 221
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=27.78 E-value=54 Score=21.26 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~ 39 (116)
.++|+.+.|+++|-+.+.+++|+.+.
T Consensus 36 r~~v~~~~Tl~~li~~~~~~~~lev~ 61 (125)
T PF09358_consen 36 RIEVNGDMTLQELIDYFKEKYGLEVT 61 (125)
T ss_dssp EEEEES--BHHHHHHHHHHTTS-EEE
T ss_pred EEEEcCCCCHHHHHHHHHHHhCceEE
Confidence 36777789999999999999997543
No 222
>PF13592 HTH_33: Winged helix-turn helix
Probab=27.67 E-value=77 Score=17.44 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=17.5
Q ss_pred CCCCHHHHHHHHHHhhCCCCC
Q 033570 19 SSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 19 ~~~TV~~LK~~I~~~~~i~~~ 39 (116)
..+|+.+|...|++.+|+..+
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys 23 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYS 23 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEc
Confidence 457999999999999998643
No 223
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.64 E-value=1.1e+02 Score=18.44 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHhhCCCCCceEE
Q 033570 19 SSDTIDNVKAKIQDKEGIPPDQQRL 43 (116)
Q Consensus 19 ~~~TV~~LK~~I~~~~~i~~~~q~L 43 (116)
++-+-.++++.|++.++++++.+-+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv 35 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVV 35 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4567899999999999997766544
No 224
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=27.60 E-value=1.3e+02 Score=18.19 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=19.6
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++..++++...+++++..|+.+.
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tLLda 28 (97)
T TIGR02008 4 KVTLVNPDGGEETIECPDDQYILDA 28 (97)
T ss_pred EEEEEECCCCEEEEEECCCCcHHHH
Confidence 5667667887888999999988764
No 225
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=27.39 E-value=40 Score=19.46 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=10.3
Q ss_pred CccccCCCCCCCEEEE
Q 033570 54 RTLADYNIQKESTLHL 69 (116)
Q Consensus 54 ~tL~~~gi~~g~~I~v 69 (116)
..|...|+++|++|.+
T Consensus 47 ~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 47 KALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHTTT--TT-EEEE
T ss_pred HHHHHcCCCCCCEEEE
Confidence 4688889999999865
No 226
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=27.20 E-value=84 Score=19.21 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 35 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 35 ~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
.+|+.+-+++|+|+.+.-+ .+..-+|..|+.|.+..+...
T Consensus 5 ~i~vkra~Vly~g~k~~i~-d~~~~~v~Hge~VsffCknke 44 (85)
T PF09014_consen 5 KIPVKRARVLYNGEKVWIQ-DLFKNGVLHGEIVSFFCKNKE 44 (85)
T ss_dssp --SSSS-EEEETTEEEEHH-HHTTT-BETT-EEEEEEEETT
T ss_pred ccceeEEEEEECCEEechh-hcccCceeeCCEEEEEEcCCc
Confidence 4678889999999987432 234456778999999888654
No 227
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=27.08 E-value=1.2e+02 Score=16.76 Aligned_cols=41 Identities=17% Similarity=0.510 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCccccCCCCCCCEE
Q 033570 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTL 67 (116)
Q Consensus 21 ~TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~~gi~~g~~I 67 (116)
.|...|.+.|.++.+.+.+ .+-+| .|+.+ .++++ +.+|...
T Consensus 9 ~s~e~lL~~it~~v~l~~g-Vr~lyt~~G~~V---~~l~~--l~dg~~y 51 (60)
T PF03607_consen 9 RSFEQLLDEITEKVQLPSG-VRKLYTLDGKRV---KSLDE--LEDGGSY 51 (60)
T ss_dssp SSHHHHHHHHHHSSSSTTS--SEEEETTSSEE---SSGGG--S-TTEEE
T ss_pred cCHHHHHHHHHhhcCCCcc-cceEECCCCCEe---CCHHH--HCCCCEE
Confidence 5788999999999988866 54444 67777 34444 4456543
No 228
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=26.63 E-value=64 Score=19.86 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=13.2
Q ss_pred CceEEEECCEEcCCCC----ccccCCCCCCCEEEEEEecC
Q 033570 39 DQQRLIFAGKQLEDGR----TLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 39 ~~q~L~~~g~~L~d~~----tL~~~gi~~g~~I~v~~~~~ 74 (116)
.++++++......+.. --.++.|+.|..+.|.-...
T Consensus 9 geI~VL~~~~V~~~~~~kk~G~kDLpi~~GE~LeVI~~t~ 48 (89)
T PF14603_consen 9 GEIRVLYTMMVDPNLKSKKWGGKDLPIKPGEILEVIQFTD 48 (89)
T ss_dssp S----SS--B--TTS-SS---TTB----TT-B-EEEEESS
T ss_pred ceEEEEEEEEEccCcccccCCcccCCcCCCCEEEEEEeCC
Confidence 4566666666665422 24678889999999887543
No 229
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=26.33 E-value=1.5e+02 Score=17.73 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=29.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~ 38 (116)
+|.... .|+...+.++..-...+|.+++...+|.+.
T Consensus 2 RiKfE~-~gEKRIi~f~RPvkf~dl~~kv~~afGq~m 37 (79)
T cd06405 2 RIKFEH-NGEKRIIQFPRPVKFKDLQQKVTTAFGQPM 37 (79)
T ss_pred eEEEEe-cCceEEEecCCCccHHHHHHHHHHHhCCee
Confidence 444444 678888999998999999999999998653
No 230
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=26.26 E-value=1.8e+02 Score=18.47 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
++|++...+|+...+.+.+..|+.+.
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a 26 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEA 26 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHH
Confidence 46788788899999999888887664
No 231
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=25.86 E-value=4.3e+02 Score=22.72 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=46.8
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+|.|=++.|. .+.++...|+-|+--.|....|..... -..+|+...-+.. +++|++|.+.....++
T Consensus 405 ~V~VfTPkG~--~~~Lp~gaT~lDfAy~iHt~iG~~~~g--Akvng~~v~l~~~-----L~~GD~VeIits~~~~ 470 (743)
T PRK10872 405 RVYVFTPKGD--VVDLPAGSTPLDFAYHIHSDVGHRCIG--AKIGGRIVPFTYQ-----LQMGDQIEIITQKQPN 470 (743)
T ss_pred eEEEECCCCC--eEEcCCCCcHHHHHHHHhHHHHhhceE--EEECCEECCCCcC-----CCCCCEEEEEeCCCCC
Confidence 4778888887 567788889999998888887643222 2368877654444 5569999998765443
No 232
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=25.75 E-value=33 Score=18.60 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.4
Q ss_pred ccccccccccCCCccccccCC
Q 033570 96 CRKSHTRTRNQFPFFNFVNCF 116 (116)
Q Consensus 96 c~~~~~~~~~~~~~~~~~~~~ 116 (116)
||++-.+ .+.+- |||.
T Consensus 36 CRnMdSV---nPLkL--vnC~ 51 (53)
T PF10831_consen 36 CRNMDSV---NPLKL--VNCA 51 (53)
T ss_pred hcCcCCC---CCcee--eccc
Confidence 9999888 88888 9984
No 233
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=25.17 E-value=1e+02 Score=18.52 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=29.2
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEc
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL 50 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L 50 (116)
+.+.+-++.+.+..+|.+.|....+--.++.+++ |.|..+
T Consensus 8 RDiS~~v~~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l 49 (94)
T PF03147_consen 8 RDISFVVPEDVPFADIEEVIRSAGGPLLESVELFDVYRGEKL 49 (94)
T ss_dssp EEEEEEEETTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTS
T ss_pred ccEEEEECCCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCC
Confidence 3577889999999999999998886555666665 666444
No 234
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=24.79 E-value=46 Score=18.47 Aligned_cols=22 Identities=9% Similarity=0.451 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHhhCCCCC
Q 033570 18 ESSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 18 ~~~~TV~~LK~~I~~~~~i~~~ 39 (116)
+...|+.++-+.++++++++++
T Consensus 27 ~g~~t~~ei~~~l~~~y~~~~~ 48 (68)
T PF05402_consen 27 DGPRTVEEIVDALAEEYDVDPE 48 (68)
T ss_dssp -SSS-HHHHHHHHHHHTT--HH
T ss_pred cCCCCHHHHHHHHHHHcCCCHH
Confidence 4557899999999999988765
No 235
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=24.73 E-value=68 Score=18.06 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=15.9
Q ss_pred CccccCCCCCCCEEEEEEecC
Q 033570 54 RTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 54 ~tL~~~gi~~g~~I~v~~~~~ 74 (116)
.-|.++|+.+|+.|.+.-+..
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~ 46 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNP 46 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEET
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 358899999999999986533
No 236
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=24.68 E-value=1.9e+02 Score=18.49 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=31.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCC---CCCceEEEECCEEcCCCCcccc
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQLEDGRTLAD 58 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i---~~~~q~L~~~g~~L~d~~tL~~ 58 (116)
+.++.+.+.+=.+|++.+++..++ -..++.++.....+.+...+.+
T Consensus 3 vaiDtSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~D~~v~~~~~~~~ 51 (126)
T PF09967_consen 3 VAIDTSGSISDEELRRFLSEVAGILRRFPAEVHVIQFDAEVQDVQVFRS 51 (126)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEECCEeeeeeEEec
Confidence 356777777777888777766543 2456788777777766666665
No 237
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=24.32 E-value=53 Score=20.47 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=34.8
Q ss_pred CEEEEEec---CCCCHHHHHHHHHHhhCCCCCceEEEE-CCE------Ec-CC-CCcc---ccCCCCCCCEEEEEEecCC
Q 033570 11 KTITLEVE---SSDTIDNVKAKIQDKEGIPPDQQRLIF-AGK------QL-ED-GRTL---ADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 11 ~~~~i~v~---~~~TV~~LK~~I~~~~~i~~~~q~L~~-~g~------~L-~d-~~tL---~~~gi~~g~~I~v~~~~~g 75 (116)
+.+.++++ ...|+.+|-..|.+..--+ +-.+.. +++ .| .| ++.| .+|-+++|++|.++..+-|
T Consensus 18 k~h~v~l~~~~~~~ti~~Li~~l~~nll~~--r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiSTLHG 95 (96)
T PF09138_consen 18 KKHKVSLPSDGEPATIKDLIDYLRDNLLKE--RPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFISTLHG 95 (96)
T ss_dssp SEEEEEE-SSCSC-BHHHHHHHHCCCT-SS--GHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEETTT-
T ss_pred eeEEEEcCCCCCCcCHHHHHHHHHHhccCC--CHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEccCCC
Confidence 56778877 6789999998887754221 211211 111 11 12 3333 3578999999999988777
Q ss_pred C
Q 033570 76 G 76 (116)
Q Consensus 76 g 76 (116)
|
T Consensus 96 G 96 (96)
T PF09138_consen 96 G 96 (96)
T ss_dssp -
T ss_pred C
Confidence 6
No 238
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=24.28 E-value=54 Score=18.91 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.9
Q ss_pred CCccccCCCCCCCEEEEE
Q 033570 53 GRTLADYNIQKESTLHLV 70 (116)
Q Consensus 53 ~~tL~~~gi~~g~~I~v~ 70 (116)
...|.+.|+++|++|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 457889999999998764
No 239
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=23.91 E-value=82 Score=18.64 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
-.+|-..+++.+++|..++.|+.+.+
T Consensus 42 N~ali~~La~~l~v~ks~i~i~~G~~ 67 (77)
T PF02594_consen 42 NKALIRFLAKALGVPKSDIEIVSGHT 67 (77)
T ss_dssp HHHHHHHHHHHCT--TTCEEECC-CC
T ss_pred HHHHHHHHHHHhCCCcccEEEEecCC
Confidence 57899999999999999999976543
No 240
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=23.65 E-value=71 Score=19.79 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=10.0
Q ss_pred HHHHHHHHhhCCCCCceEEEECC
Q 033570 25 NVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 25 ~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
.+++.+.+ .|++++++.++++|
T Consensus 139 ~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 139 AMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHH-H---GGGEEE----
T ss_pred HHHHHHHH-hCCCCCcEEEeCcC
Confidence 34555555 77888888888776
No 241
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=23.54 E-value=1.3e+02 Score=16.09 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=13.0
Q ss_pred HHHHHHHhhCCCCCceEEEE
Q 033570 26 VKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 26 LK~~I~~~~~i~~~~q~L~~ 45 (116)
|-+.+.+.+++|++...+.+
T Consensus 24 it~~l~~~~~~p~~~v~V~i 43 (61)
T PRK02220 24 VTAAVSKNTGAPAEHIHVII 43 (61)
T ss_pred HHHHHHHHhCcChhhEEEEE
Confidence 33344556789988877654
No 242
>PF07984 DUF1693: Domain of unknown function (DUF1693) ; InterPro: IPR012937 This domain occurs in many hypothetical proteins. It also occurs in some prion-like proteins.
Probab=23.34 E-value=83 Score=24.01 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=31.9
Q ss_pred EEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 4 ~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
-|++ .|....+++.+.+-|..++..++++ |+++.+++|.
T Consensus 18 ~Ihg-rgnfPTl~v~l~~LI~~Vr~~L~~~-GI~VkdVRLN 56 (320)
T PF07984_consen 18 PIHG-RGNFPTLEVRLKDLIQVVRDRLEER-GIPVKDVRLN 56 (320)
T ss_pred eecc-CCCceeEEeeHHHHHHHHHHHHHHc-CCCccceEEe
Confidence 4445 3566789999988899999999888 9999998885
No 243
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.20 E-value=67 Score=16.14 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHHHh
Q 033570 19 SSDTIDNVKAKIQDK 33 (116)
Q Consensus 19 ~~~TV~~LK~~I~~~ 33 (116)
.+.||.+||..+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 367899999887765
No 244
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=23.09 E-value=4.2e+02 Score=21.65 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=41.7
Q ss_pred cCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEE---EECCEE--cC-C-CCccccCCCCCCCEEEEEEe
Q 033570 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL---IFAGKQ--LE-D-GRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L---~~~g~~--L~-d-~~tL~~~gi~~g~~I~v~~~ 72 (116)
.++..-+.+.+.-+.+|.++-..++++.|...+ +.| ..+|.. |+ + ...-..+|+ ++.++++-+
T Consensus 242 ~~Dhsy~tl~~~vs~svqEI~~~va~k~~~see-l~LV~v~s~GEkv~lqPnd~~v~tsL~l--n~rLfv~~r 311 (573)
T KOG2378|consen 242 LPDHSYVTLRIRVSASVQEILEAVAEKLGYSEE-LILVKVSSSGEKVILQPNDRAVFTSLGL--NSRLFVVNR 311 (573)
T ss_pred ecCceEEEEEeechhHHHHHHHHHHHHhccccc-eeEEEEccCCceeeecCCcceeeeeecc--cceEEEEch
Confidence 345556778888899999999999999998766 433 367764 33 2 223334444 456666654
No 245
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=23.01 E-value=2e+02 Score=17.94 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=27.3
Q ss_pred CCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCc
Q 033570 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (116)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~ 40 (116)
+.+..-.+.|+.++|+.++.+.+-+++.+.-..
T Consensus 14 p~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP 46 (96)
T cd01778 14 PKDTAKHLHISSKTTVREVIEALLKKFLVVDNP 46 (96)
T ss_pred cCCceeEEEEecCCcHHHHHHHHHHhheeccCC
Confidence 456677899999999999999999999974333
No 246
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=22.55 E-value=1.8e+02 Score=17.07 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=31.6
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCC---CCceEEE-ECCEEcC
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI-FAGKQLE 51 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~---~~~q~L~-~~g~~L~ 51 (116)
+|+...+.+|.-.++.-+-+..+.+.+.+ +..+++. ++|..+.
T Consensus 8 ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 78889999999888888888888887754 2334444 6777654
No 247
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=22.47 E-value=2.6e+02 Score=19.01 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=30.3
Q ss_pred EEEEecC-CCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccC
Q 033570 13 ITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 13 ~~i~v~~-~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~ 59 (116)
+.+++.. .+.+..+++...+.+.++- .+ ..|+-+....|++||
T Consensus 77 i~lele~~~~~ie~I~~iCee~lpf~y---~i-~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 77 IILELEDEEDVIEKIREICEEVLPFGY---DI-KEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEecCcHHHHHHHHHHHHHhCCCce---Ee-eeeEEeccCCchhhh
Confidence 5667777 6778888877777764332 22 358888888899887
No 248
>cd07028 RNAP_RPB3_like RPB3 subunit of RNA polymerase. The eukaryotic RPB3 subunit of RNA polymerase (RNAP), as well as its archaeal (D subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar to the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and
Probab=22.37 E-value=2.7e+02 Score=19.77 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCEEEEEecC-CCCHHH-HHHHHHHhh-CCCCCceEEEECCEEcCCCCccccC
Q 033570 1 MQIFVKTLTGKTITLEVES-SDTIDN-VKAKIQDKE-GIPPDQQRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~-~~TV~~-LK~~I~~~~-~i~~~~q~L~~~g~~L~d~~tL~~~ 59 (116)
|+|.|...+.....|.+.. +.|++. |+..+-... ++.++..++.=|...|.|+.-...+
T Consensus 1 ~~i~i~~~~~~~~~f~l~g~~~t~aNaLRRiLLsevP~~AI~~V~I~~NtS~~~DE~iaHrl 62 (212)
T cd07028 1 PQVKIREADKDNVDFILSGVDLAMANALRRVMIAEVPTMAVDSVEVETNTSVLADEILAHRL 62 (212)
T ss_pred CcEEEEEcCCCEEEEEEEccChhHHHHHHHHHHHcCcceEEEEEEEEcCCCcccceeeeeee
Confidence 6788988888888888764 455554 666554443 4555555554444455554443333
No 249
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=21.55 E-value=1.5e+02 Score=18.84 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCCCceEEEECC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
..|=+.++++.|+|++++-+.|..
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEEc
Confidence 456677788899999999988864
No 250
>KOG4361 consensus BCL2-associated athanogene-like proteins and related BAG family chaperone regulators [Signal transduction mechanisms]
Probab=21.35 E-value=44 Score=25.73 Aligned_cols=60 Identities=17% Similarity=0.331 Sum_probs=44.0
Q ss_pred EEEEecCCCCHH---HHHHHHHHhhCCCCCce--EEEECCEEcCC-CCccccCCCCCCCEEEEEEe
Q 033570 13 ITLEVESSDTID---NVKAKIQDKEGIPPDQQ--RLIFAGKQLED-GRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 13 ~~i~v~~~~TV~---~LK~~I~~~~~i~~~~q--~L~~~g~~L~d-~~tL~~~gi~~g~~I~v~~~ 72 (116)
+.+.+.+..+.+ ++++...+.+++.-.++ +++|.++.++| ...+...|..+-+.+.++.-
T Consensus 73 ~~~~i~p~~~~g~~~d~a~~~~~~ag~sh~d~~~k~~y~~~e~rd~~l~l~~~g~p~~sk~~~~~~ 138 (344)
T KOG4361|consen 73 HGLAIVPQYPSGNALDLAKPLTEDAGLSHYDQEVKLVYVDKELRDQSLRLSSAGVPDASKINVVPD 138 (344)
T ss_pred cccccccccccccchhhhcccccccceeecccccccceecccccccccccccccCcccccceeccC
Confidence 344555555544 88888888888765565 89999999877 55788889888888876653
No 251
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=21.04 E-value=2.1e+02 Score=19.05 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++...+|....+++.+..|+.+.
T Consensus 37 ~I~~~~~dG~~~~v~~~~G~sLLea 61 (143)
T PTZ00490 37 KVCVKKRDGTHCDVEVPVGMSLMHA 61 (143)
T ss_pred EEEEEcCCCCEEEEEECCCccHHHH
Confidence 6788888899899999998887764
No 252
>PRK00982 acpP acyl carrier protein; Provisional
Probab=20.84 E-value=98 Score=17.61 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhCCCCCceEEEECCEEcCCCCcc-ccCCCCCCCEEEE
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHL 69 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~gi~~g~~I~v 69 (116)
...+++.+++..+++++. +.++.++ .++|+.+-..+.+
T Consensus 5 ~~~l~~~l~~~l~~~~~~---------i~~d~~l~~dlglDSl~~~~l 43 (78)
T PRK00982 5 FEKVKKIIVEQLGVDEEE---------VTPEASFVDDLGADSLDTVEL 43 (78)
T ss_pred HHHHHHHHHHHHCCCHHH---------CCCCcchHhhcCCCHHHHHHH
Confidence 456888888888886533 5566677 7888755444433
No 253
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=20.78 E-value=1.9e+02 Score=19.76 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=36.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH-HHHHHH---hhCCC---CCceEEEECCEEcCCCCccccCCCCCCCEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV-KAKIQD---KEGIP---PDQQRLIFAGKQLEDGRTLADYNIQKESTL 67 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L-K~~I~~---~~~i~---~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I 67 (116)
.|.+. .+|+.+.++++|.+++.++ ++.+.- +.|.. -..-.++++|+....-.++... -+|..|
T Consensus 3 ~i~lt-vNG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~--~~G~~I 72 (156)
T COG2080 3 PITLT-VNGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQ--AEGAEI 72 (156)
T ss_pred cEEEE-ECCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECCeEehHHHHHHHH--hCCCeE
Confidence 34443 3889999999999987774 434421 22222 1234677888876544444332 245444
No 254
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=20.55 E-value=1.1e+02 Score=18.02 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=18.0
Q ss_pred CccccCCCCCCCEEEEEEecCCC
Q 033570 54 RTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 54 ~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+.|-+.|+.+|+.|.+.-+.+.|
T Consensus 25 ~RL~~mG~~~G~~i~vi~~aplg 47 (75)
T COG1918 25 RRLLSMGIVPGASITVVRKAPLG 47 (75)
T ss_pred HHHHHcCCCCCCEEEEEEecCCC
Confidence 45778899999999888776555
No 255
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.50 E-value=1.9e+02 Score=16.78 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=15.4
Q ss_pred EEEEEcCCCCEEEEEecCCC
Q 033570 2 QIFVKTLTGKTITLEVESSD 21 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~ 21 (116)
+|.+...+|+.+.+.+++.+
T Consensus 57 ev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 57 EVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred EEEEEECCCCEEEEEEcCCC
Confidence 45667778999999998854
No 256
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=20.45 E-value=71 Score=21.70 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHhhCCCCCceEEE
Q 033570 21 DTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 21 ~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
....+++..++..+|++++.+.+.
T Consensus 164 ~~~~~i~~~la~~~~i~~~~I~V~ 187 (188)
T PF09581_consen 164 EEEEEIKQYLADFYGISPEQIKVY 187 (188)
T ss_pred HHHHHHHHHHHHHhCCCHHHeEEe
Confidence 457889999999999999887763
No 257
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=20.37 E-value=38 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 43 LIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 43 L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|-|.|..+...+....+||+-.+.|.+..
T Consensus 13 ldYdGSqI~~~wA~~~fgI~gdSiVvfrG 41 (189)
T COG2029 13 LDYDGSQIRSAWAYRNFGIKGDSIVVFRG 41 (189)
T ss_pred ccCchhhhhhhHhHhhcCcCCceEEEEec
Confidence 66777777777778888887666665443
No 258
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=20.27 E-value=50 Score=17.88 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHhhCCCCCc
Q 033570 20 SDTIDNVKAKIQDKEGIPPDQ 40 (116)
Q Consensus 20 ~~TV~~LK~~I~~~~~i~~~~ 40 (116)
+.|..+++.++++++|++...
T Consensus 20 ~vT~k~vr~~Le~~~~~dL~~ 40 (54)
T PF08766_consen 20 TVTKKQVREQLEERFGVDLSS 40 (54)
T ss_dssp G--HHHHHHHHHHH-SS--SH
T ss_pred HhhHHHHHHHHHHHHCCCcHH
Confidence 468899999999999987553
No 259
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=20.27 E-value=2.9e+02 Score=22.89 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=43.5
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEE-ECC-----EEcCCCCc----cccCCCCCCCEEEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FAG-----KQLEDGRT----LADYNIQKESTLHLV 70 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~-~~g-----~~L~d~~t----L~~~gi~~g~~I~v~ 70 (116)
|.|-.-+|....+.|+..+|++++-+.++++..+.-+ +..|+ +-+ +.+.|+.. |+.-....+..|.+.
T Consensus 191 VKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~lF~ 269 (622)
T KOG3751|consen 191 VKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKLLFR 269 (622)
T ss_pred EEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCceeEEe
Confidence 4455568889999999999999999999998876433 33443 112 23456543 333344555555443
No 260
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=20.15 E-value=1.7e+02 Score=16.03 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=14.8
Q ss_pred hCCCCCceEEEECCEEcCCC
Q 033570 34 EGIPPDQQRLIFAGKQLEDG 53 (116)
Q Consensus 34 ~~i~~~~q~L~~~g~~L~d~ 53 (116)
.|.|+-.+.+..+|+.+.++
T Consensus 9 ~G~P~p~v~W~k~g~~l~~~ 28 (74)
T cd05748 9 SGRPTPTVTWSKDGKPLKLS 28 (74)
T ss_pred eeeCCCeEEEEECCEEcCCC
Confidence 46677788888899988543
No 261
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=20.06 E-value=1.4e+02 Score=22.30 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 20 ~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
+.. .+|++.|++.+|++..++-++-+|.
T Consensus 53 ~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs 80 (339)
T PRK06959 53 EDD-DGLAACAARYYGAPDAAHVLPVAGS 80 (339)
T ss_pred Cch-HHHHHHHHHHhCCCCcccEEECcCH
Confidence 344 8999999999999754455555554
Done!