Query 033570
Match_columns 116
No_of_seqs 165 out of 1057
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_m 60S ribosomal protein L 100.0 3.4E-31 1.2E-35 173.4 1.5 110 1-115 1-110 (128)
2 4fbj_B NEDD8; effector-HOST ta 99.9 1.2E-23 4E-28 129.2 10.2 84 1-84 1-84 (88)
3 3n3k_B Ubiquitin; hydrolase, p 99.9 1E-22 3.5E-27 123.5 9.4 81 1-81 4-84 (85)
4 3mtn_B UBA80, ubcep1, ubiquiti 99.9 1.7E-22 5.7E-27 122.4 10.2 81 1-81 4-84 (85)
5 3phx_B Ubiquitin-like protein 99.9 2.9E-22 9.9E-27 120.3 10.5 75 1-75 5-79 (79)
6 1ndd_A NEDD8, protein (ubiquit 99.9 4E-22 1.4E-26 118.2 10.7 76 1-76 1-76 (76)
7 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 2.4E-22 8.2E-27 122.6 9.9 80 1-80 8-87 (87)
8 3a9j_A Ubiquitin; protein comp 99.9 6.9E-22 2.3E-26 117.2 10.9 76 1-76 1-76 (76)
9 1sif_A Ubiquitin; hydrophobic 99.9 4.7E-22 1.6E-26 122.0 10.0 78 1-78 10-87 (88)
10 4hcn_B Polyubiquitin, ubiquiti 99.9 6.2E-22 2.1E-26 123.7 10.1 76 1-76 23-98 (98)
11 3dbh_I NEDD8; cell cycle, acti 99.9 4.8E-22 1.6E-26 121.3 9.1 76 1-76 13-88 (88)
12 3u5c_f 40S ribosomal protein S 99.9 2.5E-24 8.4E-29 144.4 -1.4 106 1-106 1-112 (152)
13 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 1.4E-21 4.7E-26 121.3 10.8 77 1-77 2-78 (96)
14 4dwf_A HLA-B-associated transc 99.9 2.2E-21 7.5E-26 119.1 9.9 77 1-78 6-82 (90)
15 3plu_A Ubiquitin-like modifier 99.9 3.3E-21 1.1E-25 118.9 9.9 70 1-70 22-91 (93)
16 1wy8_A NP95-like ring finger p 99.9 5.2E-21 1.8E-25 117.1 10.6 77 1-77 8-86 (89)
17 2uyz_B Small ubiquitin-related 99.9 2.1E-21 7.3E-26 116.4 8.5 76 1-76 4-79 (79)
18 3vdz_A Ubiquitin-40S ribosomal 99.9 5.2E-21 1.8E-25 122.1 10.5 76 1-76 36-111 (111)
19 2hj8_A Interferon-induced 17 k 99.9 1.5E-21 5.1E-26 119.7 7.5 78 1-78 5-82 (88)
20 3v6c_B Ubiquitin; structural g 99.9 5.3E-21 1.8E-25 117.8 9.8 74 1-74 18-91 (91)
21 1yx5_B Ubiquitin; proteasome, 99.9 8.3E-21 2.8E-25 118.4 10.8 77 1-77 1-77 (98)
22 2kan_A Uncharacterized protein 99.8 6.4E-21 2.2E-25 118.4 9.3 76 1-77 16-92 (94)
23 1uel_A HHR23B, UV excision rep 99.8 1.5E-20 5.3E-25 116.7 10.7 77 1-77 1-80 (95)
24 2l7r_A Ubiquitin-like protein 99.8 8.1E-21 2.8E-25 117.6 9.1 74 1-76 20-93 (93)
25 2kk8_A Uncharacterized protein 99.8 8.4E-21 2.9E-25 115.6 8.7 72 1-72 11-83 (84)
26 1we6_A Splicing factor, putati 99.8 6.3E-21 2.1E-25 121.6 8.5 80 1-80 28-111 (111)
27 1wyw_B Ubiquitin-like protein 99.8 9.1E-21 3.1E-25 118.3 8.9 76 1-76 22-97 (97)
28 3l0w_B Monoubiquitinated proli 99.8 2.6E-20 9E-25 126.8 11.6 77 1-77 1-77 (169)
29 1wgd_A Homocysteine-responsive 99.8 1.4E-20 4.9E-25 116.4 9.4 77 1-77 8-90 (93)
30 1j8c_A Ubiquitin-like protein 99.8 1.8E-20 6.1E-25 122.0 10.2 87 1-88 33-119 (125)
31 2faz_A Ubiquitin-like containi 99.8 2.5E-20 8.4E-25 111.5 9.8 73 1-73 3-77 (78)
32 2ojr_A Ubiquitin; lanthide-bin 99.8 4.4E-20 1.5E-24 117.7 11.0 76 1-76 36-111 (111)
33 4eew_A Large proline-rich prot 99.8 2.7E-20 9.4E-25 113.7 9.6 71 1-72 18-88 (88)
34 3m62_B UV excision repair prot 99.8 1.5E-20 5E-25 119.1 8.4 75 1-75 2-76 (106)
35 2dzi_A Ubiquitin-like protein 99.8 3.4E-20 1.2E-24 111.3 9.1 73 1-73 8-80 (81)
36 1uh6_A Ubiquitin-like 5; beta- 99.8 2.6E-20 8.9E-25 116.7 7.8 71 1-71 29-99 (100)
37 1wx8_A Riken cDNA 4931431F19; 99.8 2.2E-20 7.6E-25 116.0 7.3 77 1-78 18-94 (96)
38 2wyq_A HHR23A, UV excision rep 99.8 1.1E-19 3.8E-24 110.1 10.2 74 1-74 6-82 (85)
39 3rt3_B Ubiquitin-like protein 99.8 9.6E-20 3.3E-24 122.2 10.4 77 1-77 82-158 (159)
40 3b1l_X E3 ubiquitin-protein li 99.7 7.7E-22 2.6E-26 117.5 0.0 75 1-75 1-75 (76)
41 2bwf_A Ubiquitin-like protein 99.8 1.4E-19 4.8E-24 107.7 9.9 71 1-72 5-75 (77)
42 1wx7_A Ubiquilin 3; ubiquitin- 99.8 8.6E-20 3E-24 115.4 9.5 78 1-79 18-95 (106)
43 2lxa_A Ubiquitin-like protein 99.8 3.3E-20 1.1E-24 113.8 7.2 73 1-73 2-78 (87)
44 2kdi_A Ubiquitin, vacuolar pro 99.8 1.9E-19 6.6E-24 115.3 10.9 77 1-77 10-86 (114)
45 1yqb_A Ubiquilin 3; structural 99.8 9.7E-20 3.3E-24 114.2 9.0 76 1-77 23-98 (100)
46 3q3f_A Ribonuclease/ubiquitin 99.8 8E-20 2.7E-24 126.3 9.2 77 1-77 106-182 (189)
47 4a20_A Ubiquitin-like protein 99.8 1.7E-19 5.8E-24 112.8 8.8 73 1-73 20-96 (98)
48 1we7_A SF3A1 protein; structur 99.8 2.3E-19 7.9E-24 115.0 9.4 79 1-79 26-114 (115)
49 2klc_A Ubiquilin-1; ubiquitin- 99.8 4.6E-19 1.6E-23 111.3 10.4 74 1-75 26-99 (101)
50 1ttn_A DC-UBP, dendritic cell- 99.8 2.1E-19 7.1E-24 113.7 8.9 76 1-76 24-99 (106)
51 1v5o_A 1700011N24RIK protein; 99.8 2E-19 6.8E-24 113.1 8.2 77 1-77 8-89 (102)
52 2fnj_B Transcription elongatio 99.8 3.3E-19 1.1E-23 114.6 8.8 77 1-78 1-85 (118)
53 1wju_A NEDD8 ultimate buster-1 99.8 4.7E-19 1.6E-23 110.9 9.1 75 2-77 17-95 (100)
54 1v2y_A 3300001G02RIK protein; 99.8 2E-19 6.8E-24 113.7 6.4 77 1-77 8-100 (105)
55 3u30_A Ubiquitin, linear DI-ub 99.8 1.1E-18 3.8E-23 118.6 10.3 76 1-76 21-96 (172)
56 3b08_A Polyubiquitin-C, ubiqui 99.8 1.8E-18 6E-23 114.6 10.5 76 1-76 77-152 (152)
57 2xzm_9 RPS31E; ribosome, trans 99.8 5.1E-21 1.8E-25 131.9 -2.1 101 1-106 1-107 (189)
58 4ajy_B Transcription elongatio 99.8 1.7E-18 5.8E-23 111.0 9.5 76 1-77 1-84 (118)
59 1se9_A Ubiquitin family; ubiqu 99.8 1.8E-18 6.1E-23 112.3 9.2 78 1-78 17-108 (126)
60 3u30_A Ubiquitin, linear DI-ub 99.8 1.1E-18 3.9E-23 118.5 8.6 76 1-76 97-172 (172)
61 2gow_A HCG-1 protein, ubiquiti 99.8 7.9E-19 2.7E-23 114.1 7.0 77 1-77 18-104 (125)
62 3b08_A Polyubiquitin-C, ubiqui 99.8 4.6E-18 1.6E-22 112.6 10.9 76 1-76 1-76 (152)
63 3rt3_B Ubiquitin-like protein 99.8 4.4E-18 1.5E-22 114.0 10.4 73 1-73 3-77 (159)
64 3m63_B Ubiquitin domain-contai 99.8 5.6E-19 1.9E-23 111.0 5.3 71 1-72 29-99 (101)
65 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.4E-17 4.7E-22 106.9 10.5 77 1-77 17-103 (116)
66 1wia_A Hypothetical ubiquitin- 99.7 6.1E-18 2.1E-22 104.7 8.5 74 1-77 8-82 (95)
67 4dbg_A Ranbp-type and C3HC4-ty 99.7 1.2E-17 4E-22 105.4 9.7 73 1-73 25-100 (105)
68 1v5t_A 8430435I17RIK protein; 99.7 5.8E-18 2E-22 104.1 8.0 73 1-74 8-84 (90)
69 2kd0_A LRR repeats and ubiquit 99.7 1.3E-17 4.4E-22 101.6 9.2 70 3-72 14-83 (85)
70 1wxv_A BAG-family molecular ch 99.7 1.7E-17 5.8E-22 102.2 9.4 73 1-74 8-86 (92)
71 1x1m_A Ubiquitin-like protein 99.7 1.3E-17 4.4E-22 105.6 9.0 74 1-74 13-101 (107)
72 2kdb_A Homocysteine-responsive 99.7 4.5E-18 1.5E-22 106.5 6.7 70 1-70 24-99 (99)
73 2daf_A FLJ35834 protein; hypot 99.7 1.6E-17 5.5E-22 106.1 9.2 74 2-75 17-91 (118)
74 1wgg_A Ubiquitin carboxyl-term 99.7 6.7E-18 2.3E-22 105.1 7.1 72 1-74 8-80 (96)
75 1v86_A DNA segment, CHR 7, way 99.7 2.1E-17 7.1E-22 102.6 5.3 71 1-73 18-88 (95)
76 3ai5_A Yeast enhanced green fl 99.7 1.5E-16 5E-21 116.9 9.8 73 1-73 234-306 (307)
77 2dzj_A Synaptic glycoprotein S 99.7 1.2E-16 4E-21 98.1 5.7 69 1-69 11-85 (88)
78 1oqy_A HHR23A, UV excision rep 99.7 1.7E-16 5.7E-21 119.2 7.7 77 1-77 8-88 (368)
79 2dzm_A FAS-associated factor 1 99.7 2E-16 7E-21 99.1 6.9 75 1-76 9-85 (100)
80 2kjr_A CG11242; UBL, ubiquitin 99.7 5.7E-16 2E-20 96.2 8.2 70 1-70 16-93 (95)
81 2io1_B Small ubiquitin-related 99.6 1.2E-15 3.9E-20 94.7 9.4 77 1-77 8-84 (94)
82 4b6w_A Tubulin-specific chaper 99.6 6.8E-16 2.3E-20 94.3 6.9 72 2-73 4-84 (86)
83 2io0_B Small ubiquitin-related 99.6 7.3E-15 2.5E-19 90.5 10.2 77 1-77 6-82 (91)
84 2kj6_A Tubulin folding cofacto 99.6 2.5E-15 8.7E-20 93.6 7.5 70 2-71 16-94 (97)
85 1wf9_A NPL4 family protein; be 99.6 8E-16 2.7E-20 97.4 5.0 72 1-73 8-95 (107)
86 1v6e_A Cytoskeleton-associated 99.6 3.8E-15 1.3E-19 92.3 7.4 72 1-72 8-87 (95)
87 2d07_B Ubiquitin-like protein 99.6 1.6E-14 5.4E-19 89.3 9.7 76 1-76 18-93 (93)
88 2kzr_A Ubiquitin thioesterase 99.6 4E-15 1.4E-19 90.6 5.7 71 1-72 1-77 (86)
89 1t0y_A Tubulin folding cofacto 99.6 1.5E-14 5.1E-19 93.5 8.6 73 1-73 7-87 (122)
90 1wz0_A Ubiquitin-like protein 99.6 1.9E-14 6.4E-19 90.7 8.3 78 1-78 25-102 (104)
91 3shq_A UBLCP1; phosphatase, hy 99.5 8.3E-15 2.8E-19 108.3 6.7 73 1-74 6-81 (320)
92 1wm3_A Ubiquitin-like protein 99.5 7.3E-14 2.5E-18 82.4 9.4 70 1-70 2-71 (72)
93 2eke_C Ubiquitin-like protein 99.5 8.1E-14 2.8E-18 88.0 9.0 75 1-76 32-106 (106)
94 2k8h_A Small ubiquitin protein 99.5 4.3E-14 1.5E-18 89.8 6.3 77 1-77 27-103 (110)
95 3a4r_A Nfatc2-interacting prot 99.5 4E-13 1.4E-17 80.6 9.4 70 1-70 8-78 (79)
96 1wjn_A Tubulin-folding protein 99.4 2.1E-12 7E-17 80.1 8.3 71 2-72 11-92 (97)
97 3kyd_D Small ubiquitin-related 99.3 3.3E-11 1.1E-15 76.9 10.3 75 1-75 41-115 (115)
98 3pge_A SUMO-modified prolifera 99.2 1.3E-10 4.6E-15 80.6 9.9 76 1-77 30-105 (200)
99 3tix_A Ubiquitin-like protein 99.2 1E-10 3.5E-15 80.4 7.6 76 1-77 58-133 (207)
100 3goe_A DNA repair protein RAD6 99.1 1.5E-09 5E-14 64.3 9.7 70 2-71 11-81 (82)
101 2pjh_A Protein NPL4, nuclear p 99.0 1.4E-10 4.8E-15 69.6 3.3 69 1-70 5-78 (80)
102 3v7o_A Minor nucleoprotein VP3 98.9 1.1E-10 3.7E-15 81.3 0.1 77 1-78 22-98 (227)
103 2jxx_A Nfatc2-interacting prot 98.9 1.5E-08 5.3E-13 62.7 8.8 70 1-70 26-96 (97)
104 3uf8_A Ubiquitin-like protein 98.7 7.5E-08 2.6E-12 67.1 8.7 75 2-77 23-97 (209)
105 2l76_A Nfatc2-interacting prot 98.6 3.8E-07 1.3E-11 56.0 8.7 71 1-72 22-92 (95)
106 3ix6_A TS, tsase, thymidylate 98.6 6.5E-09 2.2E-13 77.7 0.0 76 1-77 22-97 (360)
107 2al3_A TUG long isoform; TUG U 98.6 4.1E-07 1.4E-11 55.3 7.7 73 1-73 10-82 (90)
108 4efo_A Serine/threonine-protei 98.5 1E-06 3.5E-11 54.1 8.1 64 9-72 22-88 (94)
109 4da1_A Protein phosphatase 1K, 98.4 2.8E-08 9.6E-13 74.8 0.0 75 2-77 32-106 (389)
110 2bps_A YUKD protein; ubiquitin 98.3 2.5E-06 8.7E-11 51.0 6.3 68 2-69 6-80 (81)
111 2kc2_A Talin-1, F1; FERM, adhe 98.2 4.4E-06 1.5E-10 54.0 6.1 70 2-71 13-121 (128)
112 3qx1_A FAS-associated factor 1 98.1 4.4E-05 1.5E-09 45.6 8.8 69 2-71 9-82 (84)
113 2dzk_A UBX domain-containing p 97.9 0.0001 3.5E-09 46.2 8.7 71 2-72 15-90 (109)
114 2ayj_A 50S ribosomal protein L 97.8 2.2E-06 7.5E-11 47.3 -0.4 32 79-115 5-36 (56)
115 1wj4_A KIAA0794 protein; UBX d 97.7 0.00025 8.5E-09 45.5 7.8 69 2-71 45-118 (124)
116 1ryj_A Unknown; beta/alpha pro 97.5 0.0023 7.7E-08 36.7 9.3 66 1-76 5-70 (70)
117 2l32_A Small archaeal modifier 97.3 0.00096 3.3E-08 38.9 6.1 66 1-76 1-66 (74)
118 1s3s_G P47 protein; AAA ATPase 97.3 0.0011 3.7E-08 42.5 6.8 66 2-67 54-123 (127)
119 2cr5_A Reproduction 8; UBX dom 97.3 0.0017 5.8E-08 40.5 7.5 70 2-72 25-98 (109)
120 3jyu_A Ubiquitin carboxyl-term 97.3 0.0017 5.9E-08 45.6 8.4 68 13-80 154-228 (231)
121 4a3p_A Ubiquitin carboxyl-term 97.1 0.0028 9.6E-08 44.0 7.9 67 13-79 142-215 (217)
122 2daj_A KIAA0977 protein, COBL- 96.9 0.0018 6E-08 38.8 4.8 62 2-63 12-76 (91)
123 1tyg_B YJBS; alpha beta barrel 96.7 0.0069 2.3E-07 36.4 6.5 57 15-76 30-87 (87)
124 2kl0_A Putative thiamin biosyn 96.4 0.0065 2.2E-07 35.2 4.9 67 1-78 1-67 (73)
125 3rpf_C Molybdopterin convertin 96.4 0.022 7.4E-07 32.7 7.2 71 1-76 1-74 (74)
126 1vjk_A Molybdopterin convertin 96.3 0.056 1.9E-06 32.6 8.8 71 1-76 10-98 (98)
127 2juo_A GA-binding protein alph 96.2 0.033 1.1E-06 33.1 7.2 59 15-73 7-65 (89)
128 1f0z_A THis protein; ubiquitin 96.2 0.0096 3.3E-07 33.5 4.7 66 1-76 1-66 (66)
129 1oey_A P67-PHOX, neutrophil cy 96.2 0.016 5.5E-07 34.5 5.7 45 2-48 7-51 (83)
130 2k5p_A THis protein, thiamine- 96.0 0.011 3.8E-07 34.6 4.4 67 1-77 1-70 (78)
131 3po0_A Small archaeal modifier 95.5 0.15 5.2E-06 29.9 8.1 61 11-76 18-89 (89)
132 4e71_A Plexin-B2, MM1; transme 95.4 0.13 4.5E-06 32.1 7.8 63 10-72 23-110 (111)
133 1fm0_D Molybdopterin convertin 95.2 0.095 3.3E-06 30.1 6.4 59 12-76 18-81 (81)
134 2q5w_D Molybdopterin convertin 95.1 0.054 1.9E-06 31.0 5.1 60 11-76 16-77 (77)
135 3dwg_C 9.5 kDa culture filtrat 95.1 0.21 7.3E-06 29.5 7.9 74 1-76 1-93 (93)
136 2r2o_A Plexin-B1; effector dom 94.9 0.2 6.9E-06 32.4 7.8 64 11-74 41-130 (138)
137 3ivf_A Talin-1; FERM domain, c 94.8 0.21 7.1E-06 36.9 8.8 74 3-77 6-96 (371)
138 2cu3_A Unknown function protei 94.7 0.14 4.8E-06 28.4 5.9 60 9-76 5-64 (64)
139 2kvr_A Ubiquitin carboxyl-term 94.4 0.061 2.1E-06 34.5 4.5 34 13-46 58-91 (130)
140 3h6n_A Plexin-D1; structural g 94.0 0.7 2.4E-05 29.5 9.5 65 9-73 15-105 (127)
141 1ef1_A Moesin; membrane, FERM 94.0 0.51 1.8E-05 33.5 9.1 71 1-72 2-78 (294)
142 1h4r_A Merlin; FERM, neurofibr 93.9 0.68 2.3E-05 33.2 9.8 70 2-72 24-98 (314)
143 1wgk_A Riken cDNA 2900073H19 p 93.8 0.53 1.8E-05 29.3 7.9 74 1-77 12-109 (114)
144 1vd2_A Protein kinase C, IOTA 93.5 0.44 1.5E-05 28.5 6.8 46 3-48 7-54 (89)
145 3ivf_A Talin-1; FERM domain, c 93.3 0.7 2.4E-05 34.0 9.1 71 2-72 87-167 (371)
146 2g1e_A Hypothetical protein TA 93.0 0.62 2.1E-05 27.1 6.9 61 15-76 19-90 (90)
147 1rws_A Hypothetical protein PF 92.8 0.035 1.2E-06 32.1 1.1 54 14-76 24-77 (77)
148 1wgy_A RAP guanine nucleotide 92.7 1 3.4E-05 27.7 7.7 69 5-73 14-87 (104)
149 3u52_E Phenol hydroxylase comp 92.6 0.88 3E-05 28.6 7.4 65 12-76 39-113 (119)
150 4e74_A Plexin-A4; RBD, structu 92.3 0.86 3E-05 28.6 7.1 63 11-73 27-115 (117)
151 3qij_A Protein 4.1; cytoskelet 91.6 1.1 3.7E-05 32.1 8.0 72 1-72 18-95 (296)
152 2kmm_A Guanosine-3',5'-BIS(dip 91.5 0.96 3.3E-05 25.1 6.3 63 1-72 1-63 (73)
153 2i1j_A Moesin; FERM, coiled-co 91.4 1.4 4.7E-05 34.7 9.0 71 1-72 5-81 (575)
154 1y8x_B Ubiquitin-activating en 91.3 0.52 1.8E-05 28.7 5.2 59 12-70 6-82 (98)
155 3onh_A Ubiquitin-activating en 91.3 0.86 2.9E-05 29.0 6.3 57 14-71 9-78 (127)
156 2inc_C TOUB protein; DIIRON, 4 90.9 1.5 5.2E-05 25.8 8.6 60 13-72 15-82 (83)
157 2kmc_A Fermitin family homolog 90.7 1.8 6.2E-05 26.4 8.3 71 2-72 21-99 (102)
158 3ge3_C Toluene-4-monooxygenase 90.7 1.6 5.4E-05 25.7 7.2 59 13-71 17-82 (84)
159 4eut_A Serine/threonine-protei 90.2 1.9 6.6E-05 31.4 8.5 52 10-61 321-374 (396)
160 2l52_A Methanosarcina acetivor 89.9 2 6.9E-05 25.7 7.7 72 1-76 4-99 (99)
161 2k9x_A Tburm1, uncharacterized 89.1 0.14 4.8E-06 31.8 1.3 74 1-76 5-102 (110)
162 3kuz_A Plexin-C1; structural g 89.0 2.9 9.9E-05 26.5 7.4 61 11-71 39-125 (126)
163 2ylm_A Ubiquitin carboxyl-term 88.4 0.59 2E-05 36.4 4.7 33 13-45 38-70 (530)
164 3ig3_A Plxna3 protein; plexin 88.4 5.3 0.00018 31.9 9.9 64 11-74 247-336 (627)
165 2qjl_A URM1, ubiquitin-related 88.3 2.7 9.3E-05 25.0 7.8 65 11-76 20-99 (99)
166 1wgr_A Growth factor receptor- 87.5 1.5 5.2E-05 26.7 5.2 67 3-69 12-89 (100)
167 3hm6_X Plexin-B1; structural g 86.8 5.6 0.00019 31.8 9.3 64 11-74 274-363 (644)
168 1ip9_A BEM1 protein; ubiquitin 86.1 2.4 8.1E-05 25.1 5.3 39 9-48 20-58 (85)
169 1j0g_A Hypothetical protein 18 85.0 3 0.0001 24.5 5.3 64 13-76 26-90 (92)
170 2ylm_A Ubiquitin carboxyl-term 83.7 8.4 0.00029 29.9 9.0 49 12-60 353-409 (530)
171 3h9d_A ATG8, microtubule-assoc 83.2 3.2 0.00011 26.0 5.3 46 14-59 51-97 (119)
172 2dhz_A RAP guanine nucleotide 82.4 3.1 0.00011 26.1 5.0 64 7-72 16-92 (120)
173 3qa8_A MGC80376 protein; kinas 82.3 1.6 5.4E-05 35.1 4.5 50 10-59 321-371 (676)
174 3j21_g 50S ribosomal protein L 82.1 0.62 2.1E-05 25.0 1.5 24 87-115 8-31 (51)
175 3r8s_T 50S ribosomal protein L 81.7 5.7 0.0002 23.7 5.8 39 11-49 28-67 (93)
176 2zjd_A Microtubule-associated 80.3 4.8 0.00017 25.6 5.5 47 13-59 55-103 (130)
177 1v8c_A MOAD related protein; r 79.4 5.1 0.00017 26.4 5.6 63 14-78 17-89 (168)
178 3au4_A Myosin-X; protein-prote 78.3 6.9 0.00024 30.3 6.8 45 1-45 217-263 (555)
179 3m95_A Autophagy related prote 78.0 3.8 0.00013 25.9 4.4 46 14-59 56-102 (125)
180 3pvl_A Myosin VIIA isoform 1; 77.7 7.4 0.00025 31.1 6.9 45 1-45 264-309 (655)
181 1q1o_A Cell division control p 77.7 3 0.0001 25.3 3.7 39 10-48 22-65 (98)
182 2r2q_A Gamma-aminobutyric acid 77.4 4.3 0.00015 24.9 4.4 46 14-59 47-93 (110)
183 2eel_A Cell death activator CI 76.7 9.6 0.00033 22.7 6.1 50 22-74 29-80 (91)
184 4gmv_A RAS-associated and plec 76.3 6.9 0.00024 28.0 5.9 56 3-58 34-96 (281)
185 1eo6_A GATE-16, golgi-associat 75.2 5.3 0.00018 24.8 4.5 59 14-72 48-110 (117)
186 2hj1_A Hypothetical protein; s 75.0 8.1 0.00028 23.2 5.1 57 12-73 27-86 (97)
187 3tve_T 50S ribosomal protein L 74.8 8.7 0.0003 22.9 5.2 39 11-49 22-61 (92)
188 3tca_A Amyloid beta A4 precurs 74.6 11 0.00037 26.1 6.6 38 3-40 37-74 (291)
189 2c7h_A RBBP6, retinoblastoma-b 74.6 8.8 0.0003 22.6 5.1 42 3-44 9-52 (86)
190 3rui_B Autophagy-related prote 72.4 7.2 0.00025 24.3 4.6 46 14-59 50-96 (118)
191 1vq8_S 50S ribosomal protein L 70.7 10 0.00035 22.2 4.8 35 10-44 22-56 (85)
192 3hk0_A Growth factor receptor- 70.1 9.4 0.00032 26.9 5.3 68 3-70 11-87 (256)
193 1pqs_A Cell division control p 70.0 4.1 0.00014 23.5 2.8 36 12-47 3-43 (77)
194 2v1y_A Phosphatidylinositol-4, 68.8 12 0.0004 23.0 4.9 60 3-62 22-95 (108)
195 2zjr_Q 50S ribosomal protein L 68.5 10 0.00034 22.7 4.5 36 13-48 25-61 (95)
196 3j21_T 50S ribosomal protein L 66.0 15 0.00051 21.5 4.8 35 10-44 23-57 (86)
197 2lgx_A Fermitin family homolog 65.6 2 7E-05 26.5 0.9 62 11-72 36-102 (112)
198 2nvu_B Maltose binding protein 62.6 21 0.00073 28.8 6.6 59 12-70 713-789 (805)
199 3hvz_A Uncharacterized protein 61.5 20 0.00069 20.4 5.5 62 2-72 7-68 (78)
200 4gdk_A Ubiquitin-like protein 58.7 18 0.00061 21.4 4.2 59 13-71 22-84 (91)
201 3w1s_C Ubiquitin-like protein 54.3 31 0.0011 20.3 5.7 57 13-71 25-84 (91)
202 2zkr_s 60S ribosomal protein L 52.8 27 0.00092 22.9 4.7 34 11-44 94-127 (156)
203 1wmh_B Partitioning defective- 52.7 33 0.0011 20.1 5.3 45 3-47 7-54 (86)
204 4a17_R RPL23A, 60S ribosomal p 50.2 34 0.0012 22.2 4.8 35 10-44 87-121 (150)
205 3lxf_A Ferredoxin; iron, iron- 48.6 28 0.00095 20.6 4.0 25 2-26 2-26 (104)
206 3u5e_X 60S ribosomal protein L 48.4 35 0.0012 22.0 4.6 34 11-44 80-113 (142)
207 2al6_A Focal adhesion kinase 1 47.5 19 0.00067 26.3 3.8 54 5-58 12-76 (375)
208 1f2r_I Inhibitor of caspase-ac 47.0 45 0.0016 20.1 5.7 49 21-72 37-89 (100)
209 1wz3_A Autophagy 12B, ATG12B, 46.2 24 0.00081 21.0 3.4 57 13-71 30-89 (96)
210 4dxa_B KREV interaction trappe 46.1 29 0.001 24.7 4.5 34 1-38 6-41 (322)
211 3chb_D Cholera toxin; toxin/re 45.5 30 0.001 20.3 3.6 31 3-33 39-69 (104)
212 2ns5_A Partitioning-defective 43.8 47 0.0016 19.4 8.2 68 1-70 3-80 (85)
213 3f5r_A FACT complex subunit PO 43.3 17 0.0006 24.6 2.7 44 2-45 86-129 (191)
214 3iz5_X 60S ribosomal protein L 40.7 38 0.0013 22.0 3.9 34 11-44 90-123 (152)
215 2cu1_A Mitogen-activated prote 40.5 53 0.0018 19.9 4.2 43 3-48 9-52 (103)
216 4dxe_H ACP, acyl carrier prote 38.8 22 0.00074 21.1 2.4 48 13-69 18-66 (101)
217 2ktr_A Sequestosome-1; autopha 38.5 54 0.0018 20.3 4.2 27 21-47 57-84 (117)
218 3hrd_D Nicotinate dehydrogenas 37.3 35 0.0012 22.2 3.4 25 2-27 5-29 (160)
219 1n62_A Carbon monoxide dehydro 36.9 37 0.0013 22.2 3.5 26 2-28 5-30 (166)
220 2bt6_A Adrenodoxin 1; rutheniu 36.6 49 0.0017 19.4 3.8 25 2-26 8-32 (108)
221 1tt5_B Ubiquitin-activating en 35.7 11 0.00038 28.5 0.9 57 14-70 344-418 (434)
222 1t3q_A Quinoline 2-oxidoreduct 34.8 41 0.0014 21.8 3.5 28 1-29 10-37 (168)
223 4eku_A Protein-tyrosine kinase 34.3 58 0.002 24.2 4.6 52 8-59 35-97 (392)
224 3e19_A FEOA; transcriptional r 34.3 28 0.00096 19.2 2.3 23 54-76 29-51 (77)
225 1rm6_C 4-hydroxybenzoyl-COA re 34.2 43 0.0015 21.6 3.5 22 9-30 10-31 (161)
226 1ltr_D ETB-R2, heat-labIle ent 34.1 37 0.0013 20.2 2.8 31 3-33 38-68 (113)
227 2wlb_A ETP1-FD, electron trans 33.8 66 0.0023 18.6 4.1 26 2-27 5-30 (103)
228 2kkc_A Sequestosome-1; P62, PB 33.1 80 0.0028 18.9 4.8 27 21-47 42-69 (102)
229 1ffv_A CUTS, iron-sulfur prote 32.8 48 0.0016 21.6 3.5 26 2-28 5-30 (163)
230 1dd4_C 50S ribosomal protein L 32.3 42 0.0014 16.7 2.5 17 23-39 18-34 (40)
231 2y5c_A Adrenodoxin-like protei 31.9 65 0.0022 18.9 3.8 25 2-26 7-31 (109)
232 2y3a_A Phosphatidylinositol-4, 29.9 77 0.0026 27.1 5.0 69 3-72 54-136 (1092)
233 1wfy_A Regulator of G-protein 29.4 46 0.0016 20.2 2.7 62 8-72 25-88 (104)
234 4a6q_A Histone deacetylase com 28.6 50 0.0017 21.2 3.0 62 13-74 56-140 (143)
235 2h3j_A Hypothetical protein PA 28.2 34 0.0012 18.6 1.9 23 55-77 26-49 (75)
236 2vsp_A PDZ domain-containing p 28.2 66 0.0023 17.9 3.3 44 30-73 39-84 (91)
237 3kh0_A Ralgds, ralgef, RAL gua 28.1 1.2E+02 0.0041 19.3 7.6 76 1-76 28-111 (140)
238 1wxm_A A-RAF proto-oncogene se 27.9 95 0.0033 18.1 5.7 42 3-44 10-51 (86)
239 1xlq_A Putidaredoxin, PDX; [2F 27.7 89 0.0031 18.1 3.9 25 2-26 2-26 (106)
240 1ibx_B Chimera of IGG binding 27.3 51 0.0018 21.2 2.8 39 21-59 82-124 (145)
241 1uwm_A Ferredoxin VI, FDVI; el 26.6 99 0.0034 17.9 4.2 25 2-26 2-26 (106)
242 2pkt_A PDZ and LIM domain prot 26.6 87 0.003 17.3 4.0 44 31-74 40-85 (91)
243 1n7e_A AMPA receptor interacti 26.5 91 0.0031 17.5 4.0 43 30-73 42-88 (97)
244 1b44_D ETB-POL, protein (B-POL 26.4 46 0.0016 20.2 2.3 30 3-32 38-67 (129)
245 3hui_A Ferredoxin; cytochrome 26.2 1E+02 0.0036 18.9 4.1 24 2-25 23-46 (126)
246 1y8q_B Anthracycline-, ubiquit 26.2 99 0.0034 24.7 4.8 58 12-69 449-519 (640)
247 2i6v_A General secretion pathw 25.7 92 0.0031 17.2 3.7 43 30-72 31-75 (87)
248 1vq8_1 50S ribosomal protein L 25.6 13 0.00044 20.2 -0.2 18 85-102 9-26 (57)
249 3djh_A Macrophage migration in 25.6 73 0.0025 18.9 3.3 23 24-46 77-99 (114)
250 1wj6_A KIAA0049 protein, RSGI 25.5 1.2E+02 0.004 18.3 4.5 35 9-45 22-58 (101)
251 2k4y_A FEOA-like protein; GFT 25.4 40 0.0014 19.1 1.9 23 55-77 30-53 (86)
252 2lx9_A Ferrous iron transport 25.2 55 0.0019 18.5 2.5 23 55-77 25-48 (83)
253 2i4s_A General secretion pathw 25.1 1E+02 0.0036 17.7 4.3 43 30-72 49-93 (105)
254 2bkf_A Zinc-finger protein NBR 25.1 1.1E+02 0.0037 17.9 5.5 36 9-46 14-51 (87)
255 4dh4_A MIF; trimer, isomerase; 25.1 75 0.0026 18.7 3.3 23 24-46 78-100 (114)
256 1jq4_A Methane monooxygenase c 24.9 89 0.003 17.8 3.5 26 2-27 6-31 (98)
257 3ejb_A Acyl carrier protein; p 24.9 1E+02 0.0036 17.6 3.8 48 16-72 17-65 (97)
258 3m20_A 4-oxalocrotonate tautom 24.2 84 0.0029 16.3 4.6 20 26-45 22-41 (62)
259 1hfo_A Migration inhibitory fa 24.2 81 0.0028 18.4 3.3 22 25-46 78-99 (113)
260 1awd_A Ferredoxin; electron tr 24.1 1E+02 0.0035 17.4 3.6 26 1-27 1-26 (94)
261 3bbo_V Ribosomal protein L23; 24.0 25 0.00085 23.8 0.9 33 10-42 131-163 (198)
262 1uiz_A MIF, macrophage migrati 23.9 82 0.0028 18.5 3.3 22 25-46 79-100 (115)
263 1d4b_A CIDE B, human cell deat 23.8 67 0.0023 20.1 2.8 37 22-59 55-93 (122)
264 3kan_A D-dopachrome tautomeras 23.7 81 0.0028 18.9 3.2 23 24-46 78-100 (117)
265 2xcz_A Possible ATLS1-like lig 23.4 85 0.0029 18.4 3.3 24 23-46 77-100 (115)
266 3mhx_A Putative ferrous iron t 23.4 48 0.0016 18.7 2.0 20 55-74 30-49 (85)
267 2he4_A Na(+)/H(+) exchange reg 23.3 1E+02 0.0035 16.9 4.6 44 30-73 40-85 (90)
268 2i1s_A Hypothetical protein; m 23.3 1.6E+02 0.0055 19.2 5.7 27 13-39 24-50 (188)
269 2v90_A PDZ domain-containing p 23.0 78 0.0027 17.7 2.9 46 30-75 42-89 (96)
270 2kv8_A RGS12, regulator of G-p 22.9 81 0.0028 17.1 2.9 17 35-51 40-56 (83)
271 2k5l_A FEOA; structure, NESG, 22.5 50 0.0017 18.4 2.0 21 54-74 26-46 (81)
272 3b64_A Macrophage migration in 22.3 93 0.0032 18.2 3.3 25 23-47 77-101 (112)
273 3fwt_A Macrophage migration in 22.2 89 0.0031 19.2 3.3 25 23-47 98-122 (133)
274 1c1y_B Proto-onkogene serine/t 22.1 1.2E+02 0.0041 17.3 5.8 42 3-44 4-45 (77)
275 3ej9_A Alpha-subunit of trans- 21.9 1.1E+02 0.0037 16.7 4.1 20 26-45 24-43 (76)
276 1x5q_A LAP4 protein; PDZ domai 21.9 1.1E+02 0.0038 17.6 3.6 45 30-74 58-104 (110)
277 3pvv_A Chromosomal replication 21.6 31 0.0011 20.6 0.9 22 20-41 4-25 (101)
278 3iz6_Z 40S ribosomal protein S 21.5 9.3 0.00032 21.1 -1.3 19 76-94 2-20 (62)
279 2os5_A Acemif; macrophage migr 21.5 97 0.0033 18.4 3.3 22 25-46 79-100 (119)
280 3khf_A Microtubule-associated 21.4 73 0.0025 18.0 2.6 44 30-73 46-91 (99)
281 2wkb_A Macrophage migration in 21.2 97 0.0033 18.6 3.3 26 23-48 77-102 (125)
282 2c5l_C Phosphoinositide-specif 21.1 1.6E+02 0.0053 18.2 5.6 36 2-37 9-46 (117)
283 1frr_A Ferredoxin I; electron 20.9 1.2E+02 0.0042 17.0 3.8 25 2-27 3-27 (95)
284 3fwu_A Macrophage migration in 20.9 91 0.0031 19.2 3.1 24 24-47 99-122 (133)
285 2opa_A Probable tautomerase YW 20.8 95 0.0032 15.6 3.1 21 25-45 22-42 (61)
286 1otf_A 4-oxalocrotonate tautom 20.8 95 0.0033 15.6 3.1 20 26-45 23-42 (62)
287 1vku_A Acyl carrier protein; T 20.8 91 0.0031 18.2 2.9 39 22-69 18-56 (100)
288 3hhm_A Phosphatidylinositol-4, 20.8 1.4E+02 0.0048 25.5 4.9 69 3-72 45-127 (1091)
289 2nnz_A Hypothetical protein; b 20.3 44 0.0015 21.6 1.5 29 1-30 30-61 (153)
290 3cjl_A Domain of unknown funct 20.2 1E+02 0.0035 18.0 3.0 37 2-38 7-45 (88)
291 1ef5_A RGL; RAS-binding domain 20.1 1.1E+02 0.0038 18.5 3.2 73 2-74 22-102 (103)
292 3u5c_e 40S ribosomal protein S 20.1 9.6 0.00033 21.1 -1.5 19 76-94 2-20 (63)
No 1
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.96 E-value=3.4e-31 Score=173.36 Aligned_cols=110 Identities=86% Similarity=1.191 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+|+|++.+|+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++..||.+++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~ 80 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEP 80 (128)
T ss_dssp ----------------------------------------------------------------------------CCCH
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCCCh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHcCCCcccccccccccccCCCccccccC
Q 033570 81 SLMALARKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 81 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
+.+..+.+++..+++|++||.+ ++|.| +||
T Consensus 81 sl~~la~k~n~~~~ic~~~~~~---~~~~~--~~~ 110 (128)
T 3u5e_m 81 SLKALASKYNCDKSVCRKCYAR---LPPRA--TNC 110 (128)
T ss_dssp HHHHHHHHHHTSCEEETTTCCE---ECTTC--SSC
T ss_pred hHHHHHHHhhcceEeecccccc---CCchh--hcc
Confidence 9999999999999999999999 99999 888
No 2
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.91 E-value=1.2e-23 Score=129.22 Aligned_cols=84 Identities=51% Similarity=0.795 Sum_probs=73.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+..+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGGLR 80 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC------
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred chHH
Q 033570 81 SLMA 84 (116)
Q Consensus 81 ~~~~ 84 (116)
+...
T Consensus 81 ~~~~ 84 (88)
T 4fbj_B 81 QKHH 84 (88)
T ss_dssp ----
T ss_pred cccc
Confidence 6543
No 3
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=1e-22 Score=123.49 Aligned_cols=81 Identities=77% Similarity=1.057 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++.||+.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g~~ 83 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGGGG 83 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC------
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred c
Q 033570 81 S 81 (116)
Q Consensus 81 ~ 81 (116)
+
T Consensus 84 ~ 84 (85)
T 3n3k_B 84 S 84 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 4
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.89 E-value=1.7e-22 Score=122.43 Aligned_cols=81 Identities=88% Similarity=1.139 Sum_probs=74.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.||+..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg 83 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGG 83 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC----
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred c
Q 033570 81 S 81 (116)
Q Consensus 81 ~ 81 (116)
+
T Consensus 84 ~ 84 (85)
T 3mtn_B 84 S 84 (85)
T ss_dssp -
T ss_pred C
Confidence 4
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=120.27 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.88 E-value=4e-22 Score=118.21 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|++.+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++.+||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887
No 7
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=2.4e-22 Score=122.59 Aligned_cols=80 Identities=33% Similarity=0.481 Sum_probs=77.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.||++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~g 87 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSSG 87 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998764
No 8
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.88 E-value=6.9e-22 Score=117.20 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++||+.+|++|+++++..||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987
No 9
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=4.7e-22 Score=122.04 Aligned_cols=78 Identities=85% Similarity=1.232 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++.+||+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999964
No 10
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.2e-22 Score=123.70 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=74.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999987
No 11
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.87 E-value=4.8e-22 Score=121.32 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 12
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.87 E-value=2.5e-24 Score=144.44 Aligned_cols=106 Identities=70% Similarity=0.889 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC---
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI--- 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~--- 77 (116)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++.||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKR 80 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999983
Q ss_pred ---CCCchHHHHHHcCCCcccccccccccccC
Q 033570 78 ---IEPSLMALARKYNQDKMICRKSHTRTRNQ 106 (116)
Q Consensus 78 ---~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 106 (116)
....|+...++++..+++.+++|+++++.
T Consensus 81 kKk~~t~Pkk~~~~~~~~~~~~~~~~~~~~~~ 112 (152)
T 3u5c_f 81 KXXXXXXXXXXXXXXXXXXXXVLSYYKVDAEG 112 (152)
T ss_dssp -CCCCCCCSCCCCCCCCCCCCCCCCSEECSSS
T ss_pred ccccccccccccccccccccceeeEEEEccCC
Confidence 45678888899999999999999998764
No 13
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.87 E-value=1.4e-21 Score=121.26 Aligned_cols=77 Identities=94% Similarity=1.256 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+.+.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++..||.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 14
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.86 E-value=2.2e-21 Score=119.12 Aligned_cols=77 Identities=32% Similarity=0.546 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+| +|++|+++.+.+++..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQTH 82 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC---
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999999877653
No 15
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.86 E-value=3.3e-21 Score=118.92 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|+|+++.|+++.++++|++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 16
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=5.2e-21 Score=117.12 Aligned_cols=77 Identities=36% Similarity=0.607 Sum_probs=74.1
Q ss_pred CEEEEEcCCC-CEEEE-EecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g-~~~~i-~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+| +.+.+ +|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++.||+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 7899999999 69999 59999999999999999999999999999999999999999999999999999999999985
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.86 E-value=2.1e-21 Score=116.45 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|++.+|+.+.++|++++||.+||+.|+++.|+|++.|+|+|+|+.|.|+.+|++|+|.+|++|+++++..||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887
No 18
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.85 E-value=5.2e-21 Score=122.11 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|.|+.+|++|+|.+|++|+++++++||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 19
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=119.71 Aligned_cols=78 Identities=36% Similarity=0.601 Sum_probs=70.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..||+-
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999874
No 20
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.85 E-value=5.3e-21 Score=117.81 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998863
No 21
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.85 E-value=8.3e-21 Score=118.40 Aligned_cols=77 Identities=95% Similarity=1.295 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..||+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999885
No 22
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.85 E-value=6.4e-21 Score=118.42 Aligned_cols=76 Identities=28% Similarity=0.452 Sum_probs=73.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCC-CccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|++.++ .+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+++++++||+
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 6899999887 899999999999999999999999999999999999999999 999999999999999999999885
No 23
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=1.5e-20 Score=116.72 Aligned_cols=77 Identities=29% Similarity=0.573 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHh---hCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~---~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|++.+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+...+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999998765543
No 24
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=117.64 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|++ |+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999998 7899999999999999999999999999999999999999999999999999999999999999987
No 25
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.84 E-value=8.4e-21 Score=115.64 Aligned_cols=72 Identities=33% Similarity=0.489 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEE-cCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~-L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+. |+|+.+|++|||.+|++|+++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 99999999999999999999876
No 26
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.84 E-value=6.3e-21 Score=121.61 Aligned_cols=80 Identities=31% Similarity=0.421 Sum_probs=76.5
Q ss_pred CEEEEEcC---CCCEEEEEecC-CCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~---~g~~~~i~v~~-~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+.+ +|+.+.++|++ ++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 78899999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 033570 77 IIEP 80 (116)
Q Consensus 77 ~~~~ 80 (116)
+.|+
T Consensus 108 k~h~ 111 (111)
T 1we6_A 108 PSSG 111 (111)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8774
No 27
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.84 E-value=9.1e-21 Score=118.25 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|++.+|+.+.+.|.+++||.+||++|+++.|+|++.|+|+|+|+.|.|+.+|++|+|.+|++|++++++.||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 28
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.84 E-value=2.6e-20 Score=126.77 Aligned_cols=77 Identities=96% Similarity=1.296 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 29
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.4e-20 Score=116.35 Aligned_cols=77 Identities=29% Similarity=0.465 Sum_probs=72.7
Q ss_pred CEEEEEcCCCC--EEEEEecCCCCHHHHHHHHHHhh--CCCCCceEEEECCEEcCCCCccccC--CCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~--~~~i~v~~~~TV~~LK~~I~~~~--~i~~~~q~L~~~g~~L~d~~tL~~~--gi~~g~~I~v~~~~~ 74 (116)
|+|+|++.+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+++++..
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999888 57777889999999999999998 9999999999999999999999999 999999999999999
Q ss_pred CCC
Q 033570 75 GGI 77 (116)
Q Consensus 75 gg~ 77 (116)
||+
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 30
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=1.8e-20 Score=121.99 Aligned_cols=87 Identities=29% Similarity=0.329 Sum_probs=69.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
|+|+|+.. |+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..+|+..+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~~~~ 111 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNSSSV 111 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--------
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCCCCc
Confidence 78999998 89999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred chHHHHHH
Q 033570 81 SLMALARK 88 (116)
Q Consensus 81 ~~~~~~~~ 88 (116)
+...++.+
T Consensus 112 ~~~~~~~~ 119 (125)
T 1j8c_A 112 DKYAAALE 119 (125)
T ss_dssp --------
T ss_pred chhhhhhh
Confidence 66666544
No 31
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2.5e-20 Score=111.46 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCEE-EEE-ecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~-~i~-v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|++.+|+.+ .++ +++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999885 899 999999999999999999999999999999999999999999999999999999875
No 32
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=117.72 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++.||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999987
No 33
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=113.74 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++||| +|++|+++.|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999999999999999 8999999875
No 34
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.5e-20 Score=119.10 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
|+|+||..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998544
No 35
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=111.33 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 36
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=2.6e-20 Score=116.67 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
|+|+|+++.|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|++|+|+.+|++|+|.++++|+++.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 37
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.82 E-value=2.2e-20 Score=115.98 Aligned_cols=77 Identities=27% Similarity=0.345 Sum_probs=73.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|+|+|+.. |+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+..+|+-
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~~ 94 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGPS 94 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCCC
Confidence 78999998 899999999999999999999999999999999999999999999999999999999999999988853
No 38
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.82 E-value=1.1e-19 Score=110.14 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHh---hCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~---~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+|+..+|+.+.++|++++||.+||++|++. .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 78999999999999999999999999999999999998643
No 39
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.82 E-value=9.6e-20 Score=122.20 Aligned_cols=77 Identities=36% Similarity=0.589 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999983
No 40
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.71 E-value=7.7e-22 Score=117.45 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
|+|+|++.+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999876
No 41
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.82 E-value=1.4e-19 Score=107.65 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|+|++ +|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899999 8999999999999999999999999999999999999999999999999999999999999865
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=8.6e-20 Score=115.39 Aligned_cols=78 Identities=33% Similarity=0.465 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE 79 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~ 79 (116)
|+|+|+..+|+ +.++|++++||.+||++|++..++++++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+..+|+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~~ 95 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAMG 95 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCCC
Confidence 78999998875 7899999999999999999999999999999999999999999999999999999999999988754
No 43
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.3e-20 Score=113.75 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.7
Q ss_pred CEEEEEcCCCCEEEEEec--CCCCHHHHHHHH-HHhhCCCCCceEEEECCEEcCCCCccccCCC-CCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~--~~~TV~~LK~~I-~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi-~~g~~I~v~~~~ 73 (116)
|+|+||+.+|+.+.++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|++..+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999998888755 999999999999 9999999999999999999999999999999 699999999874
No 44
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.9e-19 Score=115.33 Aligned_cols=77 Identities=91% Similarity=1.265 Sum_probs=74.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
++|.|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+++||.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999985
No 45
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=9.7e-20 Score=114.25 Aligned_cols=76 Identities=34% Similarity=0.469 Sum_probs=72.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+ +.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..+|.
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999998886 78999999999999999999999999999999999999999999999999999999999988764
No 46
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.81 E-value=8e-20 Score=126.26 Aligned_cols=77 Identities=94% Similarity=1.252 Sum_probs=75.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++.||+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 47
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=1.7e-19 Score=112.83 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCEEEE--EecCCCCHHHHHHHH-HHhhCCCCCceEEEECCEEcCCCCccccCCC-CCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i--~v~~~~TV~~LK~~I-~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi-~~g~~I~v~~~~ 73 (116)
|+|+||+.+|+.+.+ +|++++||.+||++| ++..|+|+++|+|+|+|+.|.|+.+|++|+| ++|++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998776 666999999999999 8888999999999999999999999999999 999999999874
No 48
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.80 E-value=2.3e-19 Score=115.01 Aligned_cols=79 Identities=28% Similarity=0.538 Sum_probs=72.9
Q ss_pred CEEEEEcCC----------CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~----------g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
++|.|+.++ |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|.|+.+|++|+|.+|++|+++
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 357777753 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 033570 71 LRLRGGIIE 79 (116)
Q Consensus 71 ~~~~gg~~~ 79 (116)
++++||+.+
T Consensus 106 ~rl~GGk~~ 114 (115)
T 1we7_A 106 LKERSGPSS 114 (115)
T ss_dssp ECCCSCCSC
T ss_pred EEcCCCCCC
Confidence 999999765
No 49
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=111.29 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=70.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
|+|+|+.. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+.++
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 68999998 889999999999999999999999999999999999999999999999999999999999988654
No 50
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2.1e-19 Score=113.70 Aligned_cols=76 Identities=28% Similarity=0.492 Sum_probs=72.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||.+|++..|+|+++|+|+|+|+.|.|+.+|++|||.+|++|+++.+...+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987655
No 51
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=2e-19 Score=113.09 Aligned_cols=77 Identities=19% Similarity=0.384 Sum_probs=71.9
Q ss_pred CEEEEEcCCC----CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCC-CccccCCCCCCCEEEEEEecCC
Q 033570 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 1 m~v~Vk~~~g----~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~gi~~g~~I~v~~~~~g 75 (116)
|+|+|+...+ +.+.++|++++||.+||++|++..++|+++|+|+|+|+.|.|+ .+|++|+|++|++|+++.+..|
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899999754 7899999999999999999999999999999999999999887 6999999999999999999888
Q ss_pred CC
Q 033570 76 GI 77 (116)
Q Consensus 76 g~ 77 (116)
|.
T Consensus 88 g~ 89 (102)
T 1v5o_A 88 GL 89 (102)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 52
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.79 E-value=3.3e-19 Score=114.57 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=71.0
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCC-------CCCEEEEEEe
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~-------~g~~I~v~~~ 72 (116)
|+++|+...++ ++.++|.+++||.+||++|+.+.|+|++.|+|+|+|+.|+|+.+|++|||. .+++|+++++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888887776 488999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCCCC
Q 033570 73 LRGGII 78 (116)
Q Consensus 73 ~~gg~~ 78 (116)
.||.+
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 77753
No 53
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.7e-19 Score=110.95 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=67.6
Q ss_pred EEEEEcCC----CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 2 ~v~Vk~~~----g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
.|.|+..+ ++.+.++|++++||.+||+.|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++| +++++.|..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 35666666 6789999999999999999999999999999999999999999999999999999999 677766654
No 54
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2e-19 Score=113.69 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC---------------CceEEEECCEEcC-CCCccccCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQKE 64 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~---------------~~q~L~~~g~~L~-d~~tL~~~gi~~g 64 (116)
|+|+|+..+|+.+.++|++++||.+||+.|+++.++|+ +.|+|+|+|+.|. |+.+|++|||.+|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999876 3569999999996 6799999999999
Q ss_pred CEEEEEEecCCCC
Q 033570 65 STLHLVLRLRGGI 77 (116)
Q Consensus 65 ~~I~v~~~~~gg~ 77 (116)
++|+++.++.|..
T Consensus 88 ~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 88 DEVSFIKKLGQKS 100 (105)
T ss_dssp EEEEEEECSCSCC
T ss_pred CEEEEEehhccCC
Confidence 9999999987753
No 55
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=118.57 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++++..+|
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988877
No 56
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.78 E-value=1.8e-18 Score=114.61 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+++||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999987
No 57
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.78 E-value=5.1e-21 Score=131.89 Aligned_cols=101 Identities=23% Similarity=0.254 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCCC-
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIE- 79 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~~- 79 (116)
|+|+|++++|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|+ ++++|+|+++++||..+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~kr 75 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKKKK 75 (189)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcccc
Confidence 899999999999999999999999999999999999999999999999999999999 89999999999999764
Q ss_pred -----CchHHHHHHcCCCcccccccccccccC
Q 033570 80 -----PSLMALARKYNQDKMICRKSHTRTRNQ 106 (116)
Q Consensus 80 -----~~~~~~~~~~~~~~~~c~~~~~~~~~~ 106 (116)
..|+...++++..++..+.+|+++++.
T Consensus 76 kK~~~~tPK~~k~~kKkvkl~~Lk~y~Vd~~G 107 (189)
T 2xzm_9 76 KKKSYTTKKKTKHRHVHTKLGALAFYKLENNG 107 (189)
T ss_dssp CCCCCCSSSCCCCCCCCCCCSCCCCEEEETTT
T ss_pred cccccCCCccccccccccCCceeeEEEECCCc
Confidence 245555666677778889999987743
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.78 E-value=1.7e-18 Score=111.02 Aligned_cols=76 Identities=29% Similarity=0.431 Sum_probs=70.6
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCC-------CCEEEEEEe
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~-------g~~I~v~~~ 72 (116)
|.|+++...++ ++.+++.+++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.+ +++|+++++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78888888777 5778999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCC
Q 033570 73 LRGGI 77 (116)
Q Consensus 73 ~~gg~ 77 (116)
. +|.
T Consensus 81 ~-~~~ 84 (118)
T 4ajy_B 81 A-DDT 84 (118)
T ss_dssp C-SSC
T ss_pred c-CCC
Confidence 7 554
No 59
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.77 E-value=1.8e-18 Score=112.31 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCEE-EEEecCCCCHHHHHHHHHHh-----hCCCC--CceEEEECCEEcCCCCccccCCCCCC------CE
Q 033570 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (116)
Q Consensus 1 m~v~Vk~~~g~~~-~i~v~~~~TV~~LK~~I~~~-----~~i~~--~~q~L~~~g~~L~d~~tL~~~gi~~g------~~ 66 (116)
|+|.||..+|+.+ .+++++++||.+||++|++. .++|+ ++|+|+|+|+.|+|+.+|++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 69999999999999999654 46776 79999999999999999999999988 68
Q ss_pred EEEEEecCCCCC
Q 033570 67 LHLVLRLRGGII 78 (116)
Q Consensus 67 I~v~~~~~gg~~ 78 (116)
++++++++||..
T Consensus 97 mhlVlrl~g~~k 108 (126)
T 1se9_A 97 MHVIIQAPVTEK 108 (126)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEeccCCccc
Confidence 999999988753
No 60
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=118.50 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=69.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999887
No 61
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.77 E-value=7.9e-19 Score=114.10 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=69.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHH------hhCC--CCCceEEEECCEEcCCCCccccCCCCCCC--EEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~------~~~i--~~~~q~L~~~g~~L~d~~tL~~~gi~~g~--~I~v~ 70 (116)
|.|+|+...|+++.++|++++||.+||++|++ +.++ ++++|+|+|+|+.|+|+.+|++|+|..++ +|+++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 4566 48899999999999999999999999776 78889
Q ss_pred EecCCCC
Q 033570 71 LRLRGGI 77 (116)
Q Consensus 71 ~~~~gg~ 77 (116)
+++.++.
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 9887664
No 62
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.77 E-value=4.6e-18 Score=112.60 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887765
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.76 E-value=4.4e-18 Score=114.04 Aligned_cols=73 Identities=33% Similarity=0.428 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-E-CCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~-~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+..+|+.+.++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999999999999 9 7999999999999999999999999983
No 64
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.6e-19 Score=110.97 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|.|++ +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 5688887 8888999999999999999999999999999999999999999999999999999999999865
No 65
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.4e-17 Score=106.94 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=68.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHh------hCC--CCCceEEEECCEEcCCCCccccCCCCCC--CEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK------EGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~------~~i--~~~~q~L~~~g~~L~d~~tL~~~gi~~g--~~I~v~ 70 (116)
|+|+|+...|+.+.++|++++||.+||++|++. .++ |+++|+|+|.|+.|+|+.+|++|+|..+ ++||++
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 789999999999999999999999999999994 354 6999999999999999999999999766 578888
Q ss_pred EecCCCC
Q 033570 71 LRLRGGI 77 (116)
Q Consensus 71 ~~~~gg~ 77 (116)
++..+..
T Consensus 97 lr~~~~~ 103 (116)
T 1wgh_A 97 ARETLPE 103 (116)
T ss_dssp ECSSCSS
T ss_pred ccCCCCC
Confidence 8876553
No 66
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=6.1e-18 Score=104.74 Aligned_cols=74 Identities=26% Similarity=0.377 Sum_probs=69.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCC-CccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+|+..+|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|.|+ .+|++|||.+|++|+++.+.++..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~~ 82 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAA 82 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCCC
Confidence 7899999999999999999999999999999987 8999999999999998 999999999999999999865543
No 67
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.75 E-value=1.2e-17 Score=105.37 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=67.7
Q ss_pred CEEEEEcCCC--CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCC-CCCCEEEEEEec
Q 033570 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi-~~g~~I~v~~~~ 73 (116)
|+|+|++..+ ..+.++|+|++||.+||++|+++.|+|++.|||+|+|+.++|+.+|++||| .+|+++++++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999874 678999999999999999999999999999999999999999999999999 599999998753
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.74 E-value=5.8e-18 Score=104.11 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCEEEE-EecCCCCHHHHHHHHHHhhCCCCCceEEE---ECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i-~v~~~~TV~~LK~~I~~~~~i~~~~q~L~---~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+|++ .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+++....
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 7899997 7888999 99999999999999999999999999999 999999999999999999999999986543
No 69
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=1.3e-17 Score=101.61 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=64.9
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+.++..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3455668999999999999999999999999999999999999999999999999999999999998764
No 70
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.7e-17 Score=102.16 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=67.1
Q ss_pred CEEEEEcCCCCEEEEEecCC-----CCHHHHHHHHHHhhCCCCCceEEEECCEEcCC-CCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~-----~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+|++ .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|||++|++|+++.+..
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 588899999995 99999999999999999999999999999988 6689999999999999987643
No 71
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=1.3e-17 Score=105.63 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.3
Q ss_pred CEEEEEcCCC---CEEEEEecC---------CCCHHHHHHHHHHhh--CCCCCc-eEEEECCEEcCCCCccccCCCCCCC
Q 033570 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (116)
Q Consensus 1 m~v~Vk~~~g---~~~~i~v~~---------~~TV~~LK~~I~~~~--~i~~~~-q~L~~~g~~L~d~~tL~~~gi~~g~ 65 (116)
|+|+||+.++ +.+.+++++ ++||.+||++|++.. ++|+++ |+|+|+|+.|+|+.+|++|+|++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999988 788998554 599999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEEecC
Q 033570 66 TLHLVLRLR 74 (116)
Q Consensus 66 ~I~v~~~~~ 74 (116)
+|+++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999998754
No 72
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.74 E-value=4.5e-18 Score=106.50 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=63.7
Q ss_pred CEEEEEcCCCC--EEEEEecCCCCHHHHHHHHHHhh-CCC-CCceEEEECCEEcCCCCccccC--CCCCCCEEEEE
Q 033570 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~--~~~i~v~~~~TV~~LK~~I~~~~-~i~-~~~q~L~~~g~~L~d~~tL~~~--gi~~g~~I~v~ 70 (116)
|+|+||+.+|+ .+.+++++++||.+||++|++++ |.| +++|+|+|+|+.|+|+.+|++| +|.++++|+++
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999887 57899999999999999999974 555 5999999999999999999999 99999999874
No 73
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=106.13 Aligned_cols=74 Identities=16% Similarity=0.305 Sum_probs=68.0
Q ss_pred EEEEE-cCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 2 ~v~Vk-~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
.|.|+ ...++.+.++++++.||.+||+.+++.+++|++.|+|+|+|+.|+|+.+|++|||++|.+||++++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45555 667889999999999999999999999999999999999999999999999999999999999998543
No 74
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=6.7e-18 Score=105.10 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=67.0
Q ss_pred CEEEEEcCCCCEE-EEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~-~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|+|+|++ .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+++....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899996 67889 6999999999999999999999999999999999999999 99999999999999987643
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.1e-17 Score=102.62 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=65.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+. .++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.| |+.+|++|+|+++++|+++...
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 6788985 688899999999999999999999999999999999999999 5559999999999999998654
No 76
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.68 E-value=1.5e-16 Score=116.91 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|+|+|+..+|+.+.++|++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=98.06 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCEE--EE-EecCCCCHHHHHHHHHHh-hCCCCCceEEEEC--CEEcCCCCccccCCCCCCCEEEE
Q 033570 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 1 m~v~Vk~~~g~~~--~i-~v~~~~TV~~LK~~I~~~-~~i~~~~q~L~~~--g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
|+|+|++..|+.+ .+ +|++++||.+||+.|++. .++|+++|+|.|. |+.|+|+.+|++|+|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999987664 58 999999999999999995 7999999999976 99999999999999999999765
No 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.66 E-value=1.7e-16 Score=119.23 Aligned_cols=77 Identities=31% Similarity=0.567 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHH---hhCCCCCceEEEECCEEcCCCCccccCCCCCCCEE-EEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~---~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I-~v~~~~~gg 76 (116)
|+|+||+.+|+.+.|+|++++||.+||++|++ +.|+|+++|+|+|+|+.|+|+.+|++|+|++|++| +++.+..++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 88999999999999999999999999999999 56799999999999999999999999999999998 677777776
Q ss_pred C
Q 033570 77 I 77 (116)
Q Consensus 77 ~ 77 (116)
+
T Consensus 88 ~ 88 (368)
T 1oqy_A 88 Q 88 (368)
T ss_dssp S
T ss_pred C
Confidence 5
No 79
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=99.07 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|.++++.+.|+.+.++|++++||.+||++|++++|+||++|+|++ .|+ |+|+.+|++|+|++|++|+++.....+
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~~ 85 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLPP 85 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSCC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCCC
Confidence 556666778999999999999999999999999999999999986 565 899999999999999999998875443
No 80
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.65 E-value=5.7e-16 Score=96.21 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=61.6
Q ss_pred CEEEEEcCCCC--EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEEC--CE---Ec-CCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~--~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~--g~---~L-~d~~tL~~~gi~~g~~I~v~ 70 (116)
+.|.|+...++ .+.+++++++||.+||++|++.+|+|++.|+|+|. |+ .| +|+.+|++|+|.+|++|+|+
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 35778776553 78899999999999999999999999999999997 55 34 88999999999999999986
No 81
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.2e-15 Score=94.67 Aligned_cols=77 Identities=17% Similarity=0.411 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++.+..||.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999985
No 82
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.63 E-value=6.8e-16 Score=94.26 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=62.4
Q ss_pred EEEEEcC--CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE-------CCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 2 ~v~Vk~~--~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~-------~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+|.|... +.+.+.+.+++++||++||++|+..+|+|++.|+|+| .|+.|+|+.+|++|+|.+|++|||+-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 3455432 4566789999999999999999999999999999997 478899999999999999999999865
Q ss_pred c
Q 033570 73 L 73 (116)
Q Consensus 73 ~ 73 (116)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=7.3e-15 Score=90.54 Aligned_cols=77 Identities=17% Similarity=0.411 Sum_probs=74.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|.+++++.+|++|+++....||.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999885
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.5e-15 Score=93.61 Aligned_cols=70 Identities=16% Similarity=0.201 Sum_probs=61.1
Q ss_pred EEEEEcCCC--CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC---EE----cCCCCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g---~~----L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
.|.|++... ..+.+++++++||++||++|++.+|+|++.|+|+|.| +. ++|+.+|++|+|.+|++|+|+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 566776443 4688999999999999999999999999999999987 33 4889999999999999999874
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.60 E-value=8e-16 Score=97.36 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.6
Q ss_pred CEEEEEcCCCCEEEEEec-CCCCHHHHHHHHHHhhCCCCCceEEEECCE-----------E----cCCCCccccCCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~-~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~-----------~----L~d~~tL~~~gi~~g 64 (116)
|.|.|++.+|+. .++|+ +++||.+||++|++++++|++.|+|.+.|+ . ++|+.+|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999865 78999 999999999999999999999999999888 3 578999999999999
Q ss_pred CEEEEEEec
Q 033570 65 STLHLVLRL 73 (116)
Q Consensus 65 ~~I~v~~~~ 73 (116)
++|+++...
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999988763
No 86
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.8e-15 Score=92.26 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=62.3
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC---EE----cCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g---~~----L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+.|.|++.... .+.+++++++||.+||++|++..|+|+++|+|+|.| +. ++|+.+|++|||.+|++|+|+-.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 35777775543 688999999999999999999999999999999976 43 58999999999999999988753
No 87
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.58 E-value=1.6e-14 Score=89.32 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=70.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|.|.|++.+|+.+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++.+..||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5788999899999999999999999999999999999999999999999999999999999999999999998886
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.57 E-value=4e-15 Score=90.57 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.1
Q ss_pred CEEEEEcCCCCEEEEE-ecCCCCHHHHHHHHHHhhCCCCCceEEEEC--CEEcC---CCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~-v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~--g~~L~---d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|+|.|++.+|+. .+. +++++||.+||+.|+++.|+|+++|+|.|+ ++.|+ |+.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999964 477 999999999999999999999999999986 47774 688999999999999988754
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.56 E-value=1.5e-14 Score=93.47 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=63.2
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC---E----EcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K----QLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g---~----~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.|.|++..+. .+.+++++++||.+||++|++..|+|+++|+|+|.| + +++|+.+|++|||.+|++|+|+..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 36778775543 688999999999999999999999999999999977 3 247899999999999999999875
Q ss_pred c
Q 033570 73 L 73 (116)
Q Consensus 73 ~ 73 (116)
.
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 3
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=1.9e-14 Score=90.69 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|.|.|++.+|+.+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|+.+|++.+|++|+++.++.||..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCSS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCC
Confidence 578999989999999999999999999999999999999999999999999999999999999999999999999864
No 91
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.54 E-value=8.3e-15 Score=108.34 Aligned_cols=73 Identities=22% Similarity=0.440 Sum_probs=66.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE---ECCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~---~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
|.|+|++ +|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|||++|++|+++....
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 5788997 789999999999999999999999999999999999 899999999999999999999999986543
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.54 E-value=7.3e-14 Score=82.39 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|.|++.+|+.+.+.|.+++++..|++.++++.|++++.++|+|.|+.|.++.|.+++++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999986
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.52 E-value=8.1e-14 Score=88.01 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|.|.|++ +|+...+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|.++|++.+|++|+++.++.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5788999 99999999999999999999999999999999999999999999999999999999999999998886
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.50 E-value=4.3e-14 Score=89.83 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.3
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|.|.|++.+|+.+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++....||-
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998884
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.48 E-value=4e-13 Score=80.59 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.8
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|.|++.+|+ .+.+.|.+++++..|+..++++.|++++.++|+|.|+.|.++.|.+++++.+|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999985
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=2.1e-12 Score=80.09 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=60.9
Q ss_pred EEEEEc---CCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC-------EEc-CCCCccccCCCCCCCEEEEE
Q 033570 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 2 ~v~Vk~---~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g-------~~L-~d~~tL~~~gi~~g~~I~v~ 70 (116)
.|.|+. .+++.+...+++++||++||.+|++.+|+|+..|+|.|.+ ..| +|..+|+.|++.+|++|+|.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 566665 3577889999999999999999999999999999999863 225 57889999999999999998
Q ss_pred Ee
Q 033570 71 LR 72 (116)
Q Consensus 71 ~~ 72 (116)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 74
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=3.3e-11 Score=76.87 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
|.|.|++.+|....+.|.+++++..|+..++++.|+++..++|+|.|+.|.++.|..++++.+|++|.++....|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 468888888999999999999999999999999999999999999999999999999999999999999987543
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.20 E-value=1.3e-10 Score=80.55 Aligned_cols=76 Identities=13% Similarity=0.315 Sum_probs=71.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|.|+. +|+...+.|.+++++..|+..++++.|+++..++++|.|+.|.++.|..++++.+|++|+++..+.||.
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 4677875 888999999999999999999999999999999999999999999999999999999999999998885
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.16 E-value=1e-10 Score=80.44 Aligned_cols=76 Identities=12% Similarity=0.326 Sum_probs=71.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|.|.|+. +|..+.+.|.+++++..|+..++++.|+++..++++|+|+.|.++.|..++++.+|++|+++....||.
T Consensus 58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4577764 888999999999999999999999999999999999999999999999999999999999999999995
No 100
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.10 E-value=1.5e-09 Score=64.30 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.4
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEEECCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
.+.+++.....+.+.|.++.+|.+|-.....+.+++++ .++|.|.|..|+.+.++.+|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45667766677999999999999999999999999999 99999999999999999999999999999875
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.03 E-value=1.4e-10 Score=69.59 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=57.8
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEE---c--CCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~---L--~d~~tL~~~gi~~g~~I~v~ 70 (116)
|.|.|++.+| .+.+++++++|+.+|+++|++.++++++.+.+.++-.+ | .++.+|+++||++|++|++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788999887 57788999999999999999999999888777654443 3 36789999999999999875
No 102
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.93 E-value=1.1e-10 Score=81.31 Aligned_cols=77 Identities=13% Similarity=0.329 Sum_probs=1.9
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|.|.| ..+|+...+.|.+++++..|++.++++.|++++.++++|+|+.+.++.|..++++.+|++|+++....||..
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~ 98 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT 98 (227)
T ss_dssp ---------------------------------------------------------------------------CCC
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence 56777 567888999999999999999999999999999999999999999999999999999999999999999953
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.89 E-value=1.5e-08 Score=62.72 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.7
Q ss_pred CEEEEEcCCCC-EEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~-~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
+.|.|+..+|. .+.+.|..++++..|....+++.|++++.++++|.|..|.++.|..++++.+|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 36778887884 78999999999999999999999999999999999999999999999999999999875
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.71 E-value=7.5e-08 Score=67.12 Aligned_cols=75 Identities=13% Similarity=0.320 Sum_probs=69.8
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
.|.|++ .++...+.+..++++..|++..+++.|++++.+++.|.|+.+.++.+..++.+.++++|.+..+..||.
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 566776 677889999999999999999999999999999999999999999999999999999999999988874
No 105
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=3.8e-07 Score=55.98 Aligned_cols=71 Identities=14% Similarity=0.294 Sum_probs=65.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+.|.|++ +|....+.+..++....|....+++.|++++.++++|.|..+.++.|-.++++.+|++|.++.-
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 3577775 6888999999999999999999999999999999999999999999999999999999998764
No 106
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.57 E-value=6.5e-09 Score=77.65 Aligned_cols=76 Identities=13% Similarity=0.346 Sum_probs=0.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
+.|.|++ +|+...+.|..++++..|++..+++.|++++.++++|+|+.+.++.|.+++++.+|++|++.....||-
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3566766 577788999999999999999999999999999999999999999999999999999999999999984
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.56 E-value=4.1e-07 Score=55.31 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|.|+|-..+++...+.|.|++++.++-+...+++|+.+++..|.|+++.|+-+.++.-.|+.+|+.+.++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 6789999999999999999999999999999999999999999999999988999999999999999998653
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.48 E-value=1e-06 Score=54.09 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEc--CCCCccccCCCCC-CCEEEEEEe
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQK-ESTLHLVLR 72 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L--~d~~tL~~~gi~~-g~~I~v~~~ 72 (116)
.+..+.+.+.+++|+..||++|++++|||++.|+|+|.|+.+ +...+...|.-+. ..-|.+..+
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 467789999999999999999999999999999999999865 4455666665432 334544433
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.42 E-value=2.8e-08 Score=74.81 Aligned_cols=75 Identities=12% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
.|.|+. .+....+.|..++++..|++..+++.|+++..+++.|+|+.+.++.|..++++.+|++|.++....||.
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 455665 667778999999999999999999999999999999999999999999999999999999999999885
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.29 E-value=2.5e-06 Score=50.99 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=57.2
Q ss_pred EEEEEc--CCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-----ceEEEECCEEcCCCCccccCCCCCCCEEEE
Q 033570 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 2 ~v~Vk~--~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-----~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
.|++.. ..++.+.+.++...||..|++.+.+.++++.. .+++.-++..|.+...|++|+|++|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 456653 47899999999999999999999999987542 245667888999999999999999999875
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.17 E-value=4.4e-06 Score=53.99 Aligned_cols=70 Identities=26% Similarity=0.377 Sum_probs=55.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEE------------------------------------
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI------------------------------------ 44 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~------------------------------------ 44 (116)
.+.|+.++|+...+.|+.+.+|++++..|..++|++.. ..-|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999998643 22222
Q ss_pred E--CCEEcCCCCccccCCCCCCCEEEEEE
Q 033570 45 F--AGKQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 45 ~--~g~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
. .+.-|+++.+|.++||.++++|.+-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 1 12346778999999999999976544
No 112
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.07 E-value=4.4e-05 Score=45.57 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=58.4
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC---CCCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~---d~~tL~~~gi~~g~~I~v~~ 71 (116)
+|.|+.++|+.+.-....++||.+|..-|.. .+.++..+.|+ |-.+.+. .+.+|.++|+.+.++|.|--
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 6889999999888889999999999999988 56777888888 5567773 47899999999999987753
No 113
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.92 E-value=0.0001 Score=46.18 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=60.7
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC--C-CCccccCCCCCCCEEEEEEe
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~--d-~~tL~~~gi~~g~~I~v~~~ 72 (116)
+|.||.++|+.+.-....++||.+|.+-|....+.+.....|+ |-.+.+. | +++|.++|+.+..++++...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999899999999999999999988777778887 5677775 3 78999999999888877654
No 114
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=97.81 E-value=2.2e-06 Score=47.35 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=28.7
Q ss_pred CCchHHHHHHcCCCcccccccccccccCCCccccccC
Q 033570 79 EPSLMALARKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 79 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
.++....+.+++.++++||+||.+ ++|.| |||
T Consensus 5 e~~~~~lA~k~~~~k~ICrkC~AR---np~~A--~~C 36 (56)
T 2ayj_A 5 DPAKLQIVQQRVFLKKVCRKCGAL---NPIRA--TKC 36 (56)
T ss_dssp CSCCSSTTTTCSCCCEEETTTCCE---ECTTC--SSC
T ss_pred chhHHHHHHHHHhchhhhccccCc---CCccc--ccc
Confidence 456677788999999999999999 99999 999
No 115
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.68 E-value=0.00025 Score=45.45 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=58.5
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEc--CC-CCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L--~d-~~tL~~~gi~~g~~I~v~~ 71 (116)
+|.||.++|..+.-....++||.+|..-|... +.++....|+ |-.+.| .| +.+|.++|+.+..+|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999998888999999999999999887 7777788887 567777 33 7899999999988877654
No 116
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.48 E-value=0.0023 Score=36.71 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=50.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|.... ....++++...|+.+|.+.+ ++++....+..+|..+..+. -+++|+.|.++....||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 567776643 23456788888999998876 56677778889999997665 46779999998877776
No 117
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.28 E-value=0.00096 Score=38.90 Aligned_cols=66 Identities=14% Similarity=0.367 Sum_probs=51.7
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+|+-.+.....+++++..||.+|-+. ++++++..-+..||+.+..+.. .+|+.|.++--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEEEeeccc
Confidence 89999987555566899999999987655 5999998878889998876652 248888887666666
No 118
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.27 E-value=0.0011 Score=42.55 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=54.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhh-CCCCCceEEE--ECCEEcCC-CCccccCCCCCCCEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~-~i~~~~q~L~--~~g~~L~d-~~tL~~~gi~~g~~I 67 (116)
+|.|+..+|..+.-....++||.+|..-|.... +.....+.|+ |-.+.|.| +.+|.++|+.+..+|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999998889999999999999999864 3445677777 56788875 789999999985443
No 119
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.26 E-value=0.0017 Score=40.50 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=57.6
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE--ECCEEcC--CCCccccCCCCCCCEEEEEEe
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~--~~g~~L~--d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+|.|+.++|+.+.-....++||.+|..-|... +..+....|+ |-.+.|. .+.+|.++|+.+..+|.|...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 68899999998888889999999999999865 5556677886 5567775 378999999999988877654
No 120
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=97.26 E-value=0.0017 Score=45.58 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=57.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEEE-C----CEEcCC-CCccccCCCCCCCEEEEEEecCCCCCCC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGGIIEP 80 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~~-~----g~~L~d-~~tL~~~gi~~g~~I~v~~~~~gg~~~~ 80 (116)
+.+.++..+|+.+|++.+.+.++++++ ..||.. . ...|.| +.+|.++++.++..|.+-.+...|..+.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~WP~ 228 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPR 228 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCCCC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCCCc
Confidence 456779999999999999999999987 688873 2 335665 6899999999999999999988886653
No 121
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=97.08 E-value=0.0028 Score=44.04 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=55.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEE--E-CCE--EcCC-CCccccCCCCCCCEEEEEEecCCCCCC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AGK--QLED-GRTLADYNIQKESTLHLVLRLRGGIIE 79 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~--~-~g~--~L~d-~~tL~~~gi~~g~~I~v~~~~~gg~~~ 79 (116)
+.+.++..+||.+|++.+.+.++++++ ..||. + .++ .|.+ +.+|.++++.++..|.+-.+...|..+
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~WP 215 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTWP 215 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CCC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCCC
Confidence 557889999999999999999999987 67775 3 333 5665 679999999999999999998888654
No 122
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.92 E-value=0.0018 Score=38.77 Aligned_cols=62 Identities=13% Similarity=0.239 Sum_probs=55.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE---CCEEcCCCCccccCCCCC
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 63 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~---~g~~L~d~~tL~~~gi~~ 63 (116)
++.|.-...+...+.|+|..++.+|--.|.++-.+.++...|.. .+..|+-+++|.+|||.+
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 67788877788999999999999999999999999999998874 455788899999999986
No 123
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.73 E-value=0.0069 Score=36.36 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=42.5
Q ss_pred EEecCC-CCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 15 LEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 15 i~v~~~-~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
++++.. .||.+|.+.+ ++++....+..||+.+..+ ...+.-+++|+.|.++....||
T Consensus 30 ~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 445665 8999998876 5677778888999988543 3445567889999999887765
No 124
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.45 E-value=0.0065 Score=35.19 Aligned_cols=67 Identities=10% Similarity=0.210 Sum_probs=49.4
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
|+|+| +|+... + +..||.+|-+. .++++...-+..||..+..+ ...+.-+++|+.|.++.-..||.-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG~~ 67 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGGLE 67 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCCCS
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCCcc
Confidence 55555 555444 4 56899998764 47888888888999998543 455556778999999998888863
No 125
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=96.44 E-value=0.022 Score=32.70 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=48.8
Q ss_pred CEEEEEcCCC-CEEEEEecCCCCHHHHHHHHHHhhCCCC--CceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g-~~~~i~v~~~~TV~~LK~~I~~~~~i~~--~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|.|+|+-... +...+++ ...||.+|.+.+....++.. ....+..||+.+.+ .+.-+++|+.|.+.....||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 7788877642 1134666 56799999999987543321 45677788887543 23457789999999888776
No 126
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.28 E-value=0.056 Score=32.62 Aligned_cols=71 Identities=13% Similarity=0.298 Sum_probs=48.1
Q ss_pred CEEEEEcCC------C-CEEEEEecCCCCHHHHHHHHHHhhC-C----------CCCceEEEECCEEcCCCCccccCCCC
Q 033570 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (116)
Q Consensus 1 m~v~Vk~~~------g-~~~~i~v~~~~TV~~LK~~I~~~~~-i----------~~~~q~L~~~g~~L~d~~tL~~~gi~ 62 (116)
|+|.|+... | ....+++++..||.+|.+.+...+. + ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 556665542 3 4567888888999999999987642 1 1245677889988764 44577
Q ss_pred CCCEEEEEEecCCC
Q 033570 63 KESTLHLVLRLRGG 76 (116)
Q Consensus 63 ~g~~I~v~~~~~gg 76 (116)
+|+.|.+.....||
T Consensus 85 dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 85 DGDVVGVFPPVSGG 98 (98)
T ss_dssp TTCEEEEESCC---
T ss_pred CCCEEEEECCCCCC
Confidence 89999988776665
No 127
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=96.24 E-value=0.033 Score=33.10 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=51.0
Q ss_pred EEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
..++=..++..||..++.+.+++.+...+...+..|.++++|.+.+++-...+.+.+..
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 34556678999999999999999999999999999999999999999877777766653
No 128
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=96.22 E-value=0.0096 Score=33.51 Aligned_cols=66 Identities=15% Similarity=0.263 Sum_probs=46.6
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
|+|+| +|+. ++++...||.+|.+.+ ++++....+..+|+.+..+ ...+.-+++|+.|.++....||
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 55555 4554 4556778999998877 5667778888999988542 2333456789999998877665
No 129
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.18 E-value=0.016 Score=34.48 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=38.6
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
.|.|... -++.|.|+++.+..+|+++|.++.+++++..+|.|...
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 4555553 57889999999999999999999999999999999654
No 130
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.01 E-value=0.011 Score=34.63 Aligned_cols=67 Identities=16% Similarity=0.334 Sum_probs=50.0
Q ss_pred CEEEEEcCCCCEEEEEec--CCCCHHHHHHHHHHhhCCC-CCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 033570 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~--~~~TV~~LK~~I~~~~~i~-~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~ 77 (116)
|+|+| +|+.. +++ ...||.+|-+.+ +++ +...-+..||..+..+ ...+.-+++|+.|.++.-..||.
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 66666 45544 455 668999987755 677 7778888999998544 45556677899999998888885
No 131
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=95.45 E-value=0.15 Score=29.90 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=45.6
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhC-C-----C-----CCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~-i-----~-----~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
....++++...||.+|.+.+...+. + . .....+..||+....+ .-+++|+.|.+.....||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCCEEEEECCCCCC
Confidence 5577888888899999999988752 1 1 0136778899988653 346779999999887776
No 132
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.39 E-value=0.13 Score=32.10 Aligned_cols=63 Identities=38% Similarity=0.494 Sum_probs=45.0
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEEE----CCEEcCCC-------------CccccCCCCCC
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 64 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~~----~g~~L~d~-------------~tL~~~gi~~g 64 (116)
+..+.+.|-..+||.+.|++|-..+ |.| ++++-|-+ .|++|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4557788888999999999998764 333 45566654 35566652 25889999999
Q ss_pred CEEEEEEe
Q 033570 65 STLHLVLR 72 (116)
Q Consensus 65 ~~I~v~~~ 72 (116)
+++.++.+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99987654
No 133
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.16 E-value=0.095 Score=30.15 Aligned_cols=59 Identities=5% Similarity=0.128 Sum_probs=41.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhC-----CCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~-----i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
...++ .+..||.+|.+.+..... ++.....+..||+....+ .-+++|+.|.+.....||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~-----~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFD-----HPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTT-----CBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCC-----CCCCCCCEEEEeCCCCCC
Confidence 44555 567799999999876531 233456788899987543 356789999998877766
No 134
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.11 E-value=0.054 Score=30.96 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=43.3
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCce--EEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q--~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
....++++...||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.+.....||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 3456677777899999999887642 11334 788899988754 346679999988777665
No 135
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=95.08 E-value=0.21 Score=29.54 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=47.9
Q ss_pred CEEEEEcCC------CCEEEEEecCCCCHHHHHHHHHHhhCC------C-------CCceEEEECCEEcCCCCccccCCC
Q 033570 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (116)
Q Consensus 1 m~v~Vk~~~------g~~~~i~v~~~~TV~~LK~~I~~~~~i------~-------~~~q~L~~~g~~L~d~~tL~~~gi 61 (116)
|+|+|+-.. |....+++ +..||.+|.+.+.+++.- . .....+..||+......- .+.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667776542 32234664 457999999999887520 1 113677789987754222 23457
Q ss_pred CCCCEEEEEEecCCC
Q 033570 62 QKESTLHLVLRLRGG 76 (116)
Q Consensus 62 ~~g~~I~v~~~~~gg 76 (116)
++|+.|.+.....||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 889999999888776
No 136
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.92 E-value=0.2 Score=32.42 Aligned_cols=64 Identities=33% Similarity=0.530 Sum_probs=46.0
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEEE----CCE-EcCCC-------------CccccCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~~----~g~-~L~d~-------------~tL~~~gi~~g 64 (116)
..+.+.|-..+||.+.|++|-..+ +.| ++++-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457888999999999999998874 343 34555543 344 36552 26999999999
Q ss_pred CEEEEEEecC
Q 033570 65 STLHLVLRLR 74 (116)
Q Consensus 65 ~~I~v~~~~~ 74 (116)
+++.++.+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9999887743
No 137
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.82 E-value=0.21 Score=36.88 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=55.4
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC----CCCCceEEEE------CCEEcCCCCccccCCCCCCCEEEEE--
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLV-- 70 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~----i~~~~q~L~~------~g~~L~d~~tL~~~gi~~g~~I~v~-- 70 (116)
+.|... +.+-.+..++++||.+....|.+++. .++++.-|.. +|.=|.+..+|..|++.+++.+...
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc
Confidence 445444 56678999999999999999988874 3566666665 3444777889999999999987664
Q ss_pred -----EecCCCC
Q 033570 71 -----LRLRGGI 77 (116)
Q Consensus 71 -----~~~~gg~ 77 (116)
+.+.+|.
T Consensus 85 ~~~~~V~l~dg~ 96 (371)
T 3ivf_A 85 QRPLKIRMLDGT 96 (371)
T ss_dssp EEEEEEECTTSC
T ss_pred eeEEEEECcCCC
Confidence 5566664
No 138
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=94.65 E-value=0.14 Score=28.38 Aligned_cols=60 Identities=13% Similarity=0.315 Sum_probs=42.9
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
+|+.+. + +..||.+|.+.+ ++++....+..+|+.+..+ ...+.-+++|+.|.++....||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 555544 4 568999998877 5666777888999987533 3344457789999998877765
No 139
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.42 E-value=0.061 Score=34.49 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEEC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
..+.|..++|+.+|+..|++.+|+|++.|+|...
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678889999999999999999999999999853
No 140
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.00 E-value=0.7 Score=29.45 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=47.2
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEEE----CCE-EcCC-C------------CccccCCCC
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLED-G------------RTLADYNIQ 62 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~~----~g~-~L~d-~------------~tL~~~gi~ 62 (116)
++..+.+.|-..+||.+.|++|-..+ +.| ++++.|-+ .|. .|.| + .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 44567888889999999999998764 333 45666665 233 3654 1 258899999
Q ss_pred CCCEEEEEEec
Q 033570 63 KESTLHLVLRL 73 (116)
Q Consensus 63 ~g~~I~v~~~~ 73 (116)
+|+++.++.+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999888663
No 141
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=93.96 E-value=0.51 Score=33.45 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=52.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEEE---CCE--EcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~~---~g~--~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.+.|..++| +..+.+++.+|+.+|-+.|.++.|+... ..-|.+ +|. -|+.+..+.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4678888888 6779999999999999999999998543 345554 343 367788888876655554444443
No 142
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=93.93 E-value=0.68 Score=33.21 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=51.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC-CceEEEE--CCEE--cCCCCccccCCCCCCCEEEEEEe
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGKQ--LEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-~~q~L~~--~g~~--L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
.+.|..++| .+.+.+++.+|+.+|-+.|.++.|+.. +..-|.| .|.. |+.+..|.+.++..+....+..+
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 567888888 788999999999999999999999853 3445554 4443 77788888887655554444443
No 143
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=93.81 E-value=0.53 Score=29.29 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=46.2
Q ss_pred CEEEEEcCC------C--CEEEEEecC---CCCHHHHHHHHHHhhC-CC----------CCceEEEECCEEcCCCCcc--
Q 033570 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEG-IP----------PDQQRLIFAGKQLEDGRTL-- 56 (116)
Q Consensus 1 m~v~Vk~~~------g--~~~~i~v~~---~~TV~~LK~~I~~~~~-i~----------~~~q~L~~~g~~L~d~~tL-- 56 (116)
|+|+|+... | +.+.++++. ..||.+|...+.+.+. .. ...+.++.||+... .|
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~g 88 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLGE 88 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHCT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccCC
Confidence 567776653 3 356788884 3699999999998761 10 01123334444210 11
Q ss_pred ccCCCCCCCEEEEEEecCCCC
Q 033570 57 ADYNIQKESTLHLVLRLRGGI 77 (116)
Q Consensus 57 ~~~gi~~g~~I~v~~~~~gg~ 77 (116)
-++-+++|+.|.++....||.
T Consensus 89 ldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 89 LDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTCBCCSSEEEEEEECSCCCC
T ss_pred cCcCCCCCCEEEEeCCCCCCC
Confidence 235578899999998888884
No 144
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.53 E-value=0.44 Score=28.51 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=36.8
Q ss_pred EEEEcC-CCCEEEEEecCCCCHHHHHHHHHHhhCCCCC-ceEEEECCE
Q 033570 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGK 48 (116)
Q Consensus 3 v~Vk~~-~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~-~q~L~~~g~ 48 (116)
|.||.. +|....+.++++.+..+|.+++.+.++++.+ .+.+.|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 344443 5678889999999999999999999998754 478888765
No 145
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.30 E-value=0.7 Score=34.01 Aligned_cols=71 Identities=27% Similarity=0.399 Sum_probs=54.0
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCC-CCceEEEECC---------EEcCCCCccccCCCCCCCEEEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~-~~~q~L~~~g---------~~L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
.+.|..++|....+.+++.+|+.++-+.|.++.|+. .+..-|.+.. .-|+.++++.+.+......+.+.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 577888999999999999999999999999999984 4455666532 124556777777766666776655
Q ss_pred e
Q 033570 72 R 72 (116)
Q Consensus 72 ~ 72 (116)
+
T Consensus 167 K 167 (371)
T 3ivf_A 167 K 167 (371)
T ss_dssp C
T ss_pred E
Confidence 5
No 146
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=93.01 E-value=0.62 Score=27.09 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=41.5
Q ss_pred EEecCCCCHHHHHHHHHHhhC------C-----CCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 15 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 15 i~v~~~~TV~~LK~~I~~~~~------i-----~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
++++...||.+|.+.+..... + ......+..||+..... .-.+.-+++|+.|.++....||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 456666899999999987742 1 01456777899876422 1233457789999998777765
No 147
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=92.78 E-value=0.035 Score=32.15 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=39.9
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.+++++..||.+|.+.+ +++.....+..+|+..+.+ .-+++|+.|.++....||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 34566778999988766 4666777788999988765 446679988877766665
No 148
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=92.73 E-value=1 Score=27.73 Aligned_cols=69 Identities=10% Similarity=0.207 Sum_probs=49.2
Q ss_pred EEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE---ECCEE--cCCCCccccCCCCCCCEEEEEEec
Q 033570 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 5 Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~---~~g~~--L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
|-..+...+.+.+..+.|+.+++..++++.+...+++.|+ ++|.. |+++..--.-.+.-+..|++..+.
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 4445666778889999999999999999999876677776 67773 554333222234557788887763
No 149
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=92.61 E-value=0.88 Score=28.60 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHh-hC-------CCCCceEEEECCEEcC--CCCccccCCCCCCCEEEEEEecCCC
Q 033570 12 TITLEVESSDTIDNVKAKIQDK-EG-------IPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~-~~-------i~~~~q~L~~~g~~L~--d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.+.+.++|+++.++|-+.+-.. ++ |+.+...+..+|++.. .+++|.+.|+...+.|.+.-.-..|
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G 113 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKG 113 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCc
Confidence 3678999999999988776553 33 5666778889999884 3889999999999998776544333
No 150
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.27 E-value=0.86 Score=28.62 Aligned_cols=63 Identities=30% Similarity=0.477 Sum_probs=44.8
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEEE-C---CE-EcCC-C------------CccccCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLED-G------------RTLADYNIQKE 64 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~~-~---g~-~L~d-~------------~tL~~~gi~~g 64 (116)
..+.+.|-..+||.+.|++|-..+ +.| ++++-|-+ . |+ .|.| + .||+.|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788888999999999998764 333 34555554 2 23 3544 1 25889999999
Q ss_pred CEEEEEEec
Q 033570 65 STLHLVLRL 73 (116)
Q Consensus 65 ~~I~v~~~~ 73 (116)
+++.++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999988764
No 151
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=91.59 E-value=1.1 Score=32.06 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=51.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC-CceEEEEC---CE--EcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-~~q~L~~~---g~--~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.+.|..++|....+.|++.+|+.+|-..|.++.|+.. +..-|.+. |. -|+.++.+.+........+.+.++
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 56889999999999999999999999999999999853 33455542 32 366677777664433445555554
No 152
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=91.52 E-value=0.96 Score=25.12 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=42.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.+.|..++|+. .+++...|+.+|-..+....+ ....-...+|+..+-+..| .+|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~~~L-----~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLSYVL-----NSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTTCBC-----CSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCCcCc-----CCCCEEEEEEC
Confidence 788898888875 566677899998887743321 1223345789877655444 45788877654
No 153
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.40 E-value=1.4 Score=34.72 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=52.1
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC-CceEEEEC---CE--EcCCCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-~~q~L~~~---g~--~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
|.+.|..++| ++.+.|++.+|+.+|-..|....|+.. ..+-|.|. |. -|+.+.++.+.++..+..+.+..+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3577888888 678999999999999999999999853 34556552 22 466678888877666655544444
No 154
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=91.33 E-value=0.52 Score=28.69 Aligned_cols=59 Identities=12% Similarity=0.264 Sum_probs=40.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCCCCce----------EEEECCE--EcC------CCCccccCCCCCCCEEEEE
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ----------RLIFAGK--QLE------DGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q----------~L~~~g~--~L~------d~~tL~~~gi~~g~~I~v~ 70 (116)
...+.+++++|+.+|.+.+.+.-.+....= +-+|... .|. -+++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456899999999999999999543322211 2223222 122 1567999999999998885
No 155
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=91.29 E-value=0.86 Score=29.04 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=41.6
Q ss_pred EEEecC----CCCHHHHHHHHHHhhCCCCCceEEEE--CCEEc-----CC--CCccccCCCCCCCEEEEEE
Q 033570 14 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----ED--GRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 14 ~i~v~~----~~TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L-----~d--~~tL~~~gi~~g~~I~v~~ 71 (116)
.+.|++ ..|+.+|-+.+..++|.. +.+.+.- ..+.| +| +++|+++|+++|+.+.+.=
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 355654 479999999998899986 3666653 34444 23 6799999999999987763
No 156
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=90.88 E-value=1.5 Score=25.78 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=49.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhh-C--C--CCC-ceEEEECC--EEcCCCCccccCCCCCCCEEEEEEe
Q 033570 13 ITLEVESSDTIDNVKAKIQDKE-G--I--PPD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~-~--i--~~~-~q~L~~~g--~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
..+.|+.++|+.++-++++.+. | + .+. -.+..++| +.+..+.++++.||.+-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4578999999999999998863 3 3 223 46777999 8999999999999999999988653
No 157
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=90.72 E-value=1.8 Score=26.37 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=54.8
Q ss_pred EEEEEcCCC---CEEEEEecCCCCHHHHHHHHHHhhCCC--CCceEEEEC---CEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 2 ~v~Vk~~~g---~~~~i~v~~~~TV~~LK~~I~~~~~i~--~~~q~L~~~---g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+|+|...+. ....+.|..+.-|+.+-.+|-+...++ .++--|-.- -.+|.-..+|..|||..++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577888654 447889999999999999998887764 445555543 23688899999999999999887754
No 158
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=90.72 E-value=1.6 Score=25.72 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=49.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhh-C--C--CCCceEEEECCEE--cCCCCccccCCCCCCCEEEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKE-G--I--PPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~-~--i--~~~~q~L~~~g~~--L~d~~tL~~~gi~~g~~I~v~~ 71 (116)
..+.|+.++|+.++-++++... | + .+.-.+..++|.. |.++.++++.||.+-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999998864 4 3 2346788899997 9999999999999999998764
No 159
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=90.23 E-value=1.9 Score=31.40 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE-Ec-CCCCccccCCC
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QL-EDGRTLADYNI 61 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~-~L-~d~~tL~~~gi 61 (116)
-....+.+.+..|+.++++.+++.++++++.|.+++.+. .. +...+...+.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 345678889999999999999999999999999999884 33 33555555544
No 160
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=89.92 E-value=2 Score=25.66 Aligned_cols=72 Identities=14% Similarity=0.286 Sum_probs=44.7
Q ss_pred CEEEEEcCC------C-CEEEEEecCCCCHHHHHHHHHHhhC-CCC---------Cce-------EEEECCEEcCCCCcc
Q 033570 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 56 (116)
Q Consensus 1 m~v~Vk~~~------g-~~~~i~v~~~~TV~~LK~~I~~~~~-i~~---------~~q-------~L~~~g~~L~d~~tL 56 (116)
|+|+|+-.. | +...+ + ..||.+|.+.+...+. +.. ..+ .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l--~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPL--S-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEE--E-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeEEE--e-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 566776553 2 23444 4 5799999999987742 111 123 677888866322 12
Q ss_pred ccCCCCCCCEEEEEEecCCC
Q 033570 57 ADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 57 ~~~gi~~g~~I~v~~~~~gg 76 (116)
.+.-+++|+.|.+.....||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23356789999998777665
No 161
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=89.12 E-value=0.14 Score=31.81 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=41.9
Q ss_pred CEEEEEcCC------CCEEEEEecC----CCCHHHHHHHHHHhhCCCCCceEEE-ECC--E------EcCCCCcc-----
Q 033570 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL----- 56 (116)
Q Consensus 1 m~v~Vk~~~------g~~~~i~v~~----~~TV~~LK~~I~~~~~i~~~~q~L~-~~g--~------~L~d~~tL----- 56 (116)
|+|.|+... |+...++++. ..||.+|-..+.+.+.- .+-.|. -+| . +|-++..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~--~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVK--ERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCC--SCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHccc--cchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 445555443 3445667763 35999999999887521 121221 112 1 12222222
Q ss_pred ccCCCCCCCEEEEEEecCCC
Q 033570 57 ADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 57 ~~~gi~~g~~I~v~~~~~gg 76 (116)
-++-+++|+.|.+.....||
T Consensus 83 ldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC
T ss_pred cccCCCCcCEEEEeCCCccc
Confidence 24568899999888877776
No 162
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.05 E-value=2.9 Score=26.52 Aligned_cols=61 Identities=33% Similarity=0.506 Sum_probs=41.2
Q ss_pred CEEEEEecCCCCHHHHHHHHHHh----hCCC----CCceEEEE--C--CEEcCC----------C----CccccCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDK----EGIP----PDQQRLIF--A--GKQLED----------G----RTLADYNIQKE 64 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~----~~i~----~~~q~L~~--~--g~~L~d----------~----~tL~~~gi~~g 64 (116)
..+.+.|-..+||.+.|++|-.. .+.| ++++-|-+ + +..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45788888999999999999764 2554 33444443 1 123332 1 25788999999
Q ss_pred CEEEEEE
Q 033570 65 STLHLVL 71 (116)
Q Consensus 65 ~~I~v~~ 71 (116)
+++.++.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997764
No 163
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.43 E-value=0.59 Score=36.43 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~ 45 (116)
..+.|..++|+.+|++.|++.+|+|+++|||..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 468899999999999999999999999999874
No 164
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=88.42 E-value=5.3 Score=31.86 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=45.4
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEEE----CCE-EcCCC-------------CccccCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~~----~g~-~L~d~-------------~tL~~~gi~~g 64 (116)
..+.+.|-..+||.++|++|-... +.| ++++-|-+ .|+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 557788889999999999998764 333 44555543 233 35441 25899999999
Q ss_pred CEEEEEEecC
Q 033570 65 STLHLVLRLR 74 (116)
Q Consensus 65 ~~I~v~~~~~ 74 (116)
+++.++.+..
T Consensus 327 a~v~L~p~~~ 336 (627)
T 3ig3_A 327 SLVALVPKQV 336 (627)
T ss_dssp CEEEEEEC--
T ss_pred ceEEEEeccc
Confidence 9999988753
No 165
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=88.27 E-value=2.7 Score=25.00 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=40.2
Q ss_pred CEEEEEec--CCCCHHHHHHHHHHhhCCCC---------C----ceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 033570 11 KTITLEVE--SSDTIDNVKAKIQDKEGIPP---------D----QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 11 ~~~~i~v~--~~~TV~~LK~~I~~~~~i~~---------~----~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~g 75 (116)
+...++++ +..||.+|.+.+.+++.-.. . ...+..||+...-. .=.+.-+++|+.|.+.....|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCCCcCcCCCCEEEEECCCCC
Confidence 44667776 67899999999998863111 1 12344566532100 002345778999999887777
Q ss_pred C
Q 033570 76 G 76 (116)
Q Consensus 76 g 76 (116)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 6
No 166
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.48 E-value=1.5 Score=26.68 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=45.7
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCc-eEEE--E----CCEEcCCCCccccC----CCCCCCEEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--F----AGKQLEDGRTLADY----NIQKESTLHL 69 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~--~----~g~~L~d~~tL~~~----gi~~g~~I~v 69 (116)
|.|-..+|....+.|++++|+.++-+.++++.++..+. ..|+ + .-+.+.|+..|-+. .+.....+.+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55666789999999999999999999999999875443 3333 1 22457787664443 3444444433
No 167
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=86.78 E-value=5.6 Score=31.77 Aligned_cols=64 Identities=33% Similarity=0.530 Sum_probs=44.6
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhh--CCC------CCceEEEE----CCE-EcCCC-------------CccccCCCCCC
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~--~i~------~~~q~L~~----~g~-~L~d~-------------~tL~~~gi~~g 64 (116)
..+.+.|-..+||.+.|++|-... |.| ++++-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347788888999999999998653 333 34555553 233 35542 36999999999
Q ss_pred CEEEEEEecC
Q 033570 65 STLHLVLRLR 74 (116)
Q Consensus 65 ~~I~v~~~~~ 74 (116)
+++.++.+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9999887643
No 168
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=86.12 E-value=2.4 Score=25.09 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=30.0
Q ss_pred CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
++-.+.+.|+++.+..+|+.+|..+..+. +.+.+.|++.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 44578999999999999999999999883 3334445443
No 169
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=85.01 E-value=3 Score=24.45 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=52.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE-CCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~-~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
..+.|++.......-+-.++++++|+...-++- .|--+..+++-+..-++.|+.+.+..|-+-|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 357899999898888899999999998776664 4666777888888888899999999886554
No 170
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=83.73 E-value=8.4 Score=29.93 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=37.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCC---CCceEEE--ECCE---EcCCCCccccCC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAGK---QLEDGRTLADYN 60 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~---~~~q~L~--~~g~---~L~d~~tL~~~g 60 (116)
.+.+-++.+.||++|-+.+.++.+++ .+.+++. ++++ .++++.+|+.+.
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~ 409 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLS 409 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCccccccc
Confidence 46677888999999999999999986 4567765 7887 456777777653
No 171
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=83.15 E-value=3.2 Score=25.98 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=36.5
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcCCCCccccC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~ 59 (116)
.+-|+.+.||+++...|..+.++++++ +-|..++.....+.+++++
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 457899999999999999999998775 5565688755567777765
No 172
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=82.37 E-value=3.1 Score=26.15 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=44.0
Q ss_pred cCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCC------ceEEE---ECCE--EcCCCC--ccccCCCCCCCEEEEEEe
Q 033570 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGR--TLADYNIQKESTLHLVLR 72 (116)
Q Consensus 7 ~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~------~q~L~---~~g~--~L~d~~--tL~~~gi~~g~~I~v~~~ 72 (116)
..+...+.+.+..+.|+.+++..++++.+...+ ++.|+ ++|. .|+++. ....++ -+..|++..+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~--~NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALG--INSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSC--SSEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEeeh
Confidence 345555678889999999999999999987443 56665 6777 355432 233443 4678887766
No 173
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=82.28 E-value=1.6 Score=35.08 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=40.0
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECC-EEcCCCCccccC
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADY 59 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g-~~L~d~~tL~~~ 59 (116)
.+...+.+.++.|+.+|+..|++.+|++++.|.+++.+ -.+........+
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 45567889999999999999999999999999998754 455555555554
No 174
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=82.11 E-value=0.62 Score=24.96 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.6
Q ss_pred HHcCCCcccccccccccccCCCccccccC
Q 033570 87 RKYNQDKMICRKSHTRTRNQFPFFNFVNC 115 (116)
Q Consensus 87 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 115 (116)
.+...++++|++|+.+ .++.+ ++|
T Consensus 8 e~r~~~k~iCpkC~a~---~~~ga--w~C 31 (51)
T 3j21_g 8 EARIFKKYVCLRCGAT---NPWGA--KKC 31 (51)
T ss_dssp HHHSSSEEECTTTCCE---ECTTC--SSC
T ss_pred HHHHhCCccCCCCCCc---CCCCc--eec
Confidence 4566678899999999 88888 777
No 175
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=81.65 E-value=5.7 Score=23.73 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=33.9
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceE-EEECCEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~-L~~~g~~ 49 (116)
..+.|.|+++.+=.++|+.+++.+++.+.... +...|+.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 57899999999999999999999999998874 4567764
No 176
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=80.28 E-value=4.8 Score=25.57 Aligned_cols=47 Identities=9% Similarity=0.188 Sum_probs=35.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCEEc-CCCCccccC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADY 59 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~~L-~d~~tL~~~ 59 (116)
-.+-|+.+.||+++...|..+.++++++--++ |-+..+ ..+.+++++
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 34678999999999999999999988765545 655444 456677765
No 177
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=79.40 E-value=5.1 Score=26.42 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=43.9
Q ss_pred EEEecCCCCHHHHHHHHHHhhC-CC---------CCceEEEECCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 78 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~-i~---------~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~~gg~~ 78 (116)
.++++. .||.+|.+.+...+. +. .....+..||+...... -.+.-+++|+.|.++....||..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG~~ 89 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGGGF 89 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECccccccc
Confidence 345655 899999999987641 10 23456778999875422 22345788999999998888864
No 178
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=78.27 E-value=6.9 Score=30.27 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCC--CceEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~--~~q~L~~ 45 (116)
|.+.|..++|....+.+++.+|+.+|-+.|+++.|+.. +..-|.+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35778889999999999999999999999999999963 4555654
No 179
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=77.96 E-value=3.8 Score=25.89 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=35.0
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcCCCCccccC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~ 59 (116)
.+-|+.+.||+++...|..+.++++++ +-|..++.....+.+++++
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 467899999999999999999998776 4454566544456777665
No 180
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=77.72 E-value=7.4 Score=31.09 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=38.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCC-CCceEEEE
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF 45 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~-~~~q~L~~ 45 (116)
|.+.|..++|....+.|++.+|+.++-..|..+.|+. .+..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4577889999999999999999999999999999974 44556654
No 181
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=77.67 E-value=3 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCC-----CceEEEECCE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGK 48 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~-----~~q~L~~~g~ 48 (116)
+..+.+.|+++.+..+|..+|.++++++. ...+|.|...
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE 65 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC
Confidence 34578999999999999999999998642 2246777554
No 182
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=77.39 E-value=4.3 Score=24.90 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=34.8
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcCCCCccccC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~ 59 (116)
.+-|+.+.||+++...|..+.+++++. +-|..++.....+.+++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 457888999999999999999997765 4555566644556777765
No 183
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.67 E-value=9.6 Score=22.71 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCccccCCCCCCCEEEEEEecC
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~~gi~~g~~I~v~~~~~ 74 (116)
+..+|+.+..+.++++....+|+. .|..++|+.-+..+. ..++.+++...
T Consensus 29 sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp---~nT~lmvL~~g 80 (91)
T 2eel_A 29 SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG---DNTHFMILEKG 80 (91)
T ss_dssp SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC---SSEEEEEEETT
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC---CCCEEEEEcCC
Confidence 799999999999999766777765 688887754444432 45666666543
No 184
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=76.30 E-value=6.9 Score=28.01 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.7
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE----C---CEEcCCCCcccc
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----A---GKQLEDGRTLAD 58 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~----~---g~~L~d~~tL~~ 58 (116)
|.|-..+|....+.|++++|+++|-+.++.+.+++...-+.++ . -+.|.|+..+-+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 4555567888999999999999999999988876544433332 1 245777665544
No 185
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=75.17 E-value=5.3 Score=24.80 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=40.5
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcCCCCccccCC--C-CCCCEEEEEEe
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYN--I-QKESTLHLVLR 72 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~g--i-~~g~~I~v~~~ 72 (116)
.+-|+.+.||+++...|..+.++++++ +-|..++.....+.+++++- - .++.-+++...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457888999999999999999997775 45555666445577777652 1 22445655554
No 186
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=75.04 E-value=8.1 Score=23.18 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=41.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHh---hCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEec
Q 033570 12 TITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~---~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
.+.+++++..||.++-+...-. ..+......+..+|+....+.. +++|+.|.++-.+
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~-----L~dGDRVEIyrpl 86 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDV-----LKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCB-----CCTTCEEEECCCC
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCcc-----CCCCCEEEEEecc
Confidence 4567888999999988887532 2345556788889998874444 5679999887543
No 187
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=74.81 E-value=8.7 Score=22.87 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=33.4
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceE-EEECCEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~-L~~~g~~ 49 (116)
..+.|.|++..+=.++|+.+++.+++.+.... +...|+.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 67899999999999999999999999988774 4466653
No 188
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=74.60 E-value=11 Score=26.09 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=31.9
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCc
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~ 40 (116)
|.|-..+|....+.|++++|+.++-+.+..+.+++...
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 45556688888999999999999999999999986543
No 189
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=74.56 E-value=8.8 Score=22.64 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=28.4
Q ss_pred EEEEcCCCCE-EEEEecC-CCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 3 IFVKTLTGKT-ITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 3 v~Vk~~~g~~-~~i~v~~-~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
|+-|....+. -.+.++. ..+|.+||..|.++.++-..+.-|.
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 4445554433 4577776 5789999999999888754555444
No 190
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=72.36 E-value=7.2 Score=24.29 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=34.4
Q ss_pred EEEecCCCCHHHHHHHHHHhhCCCCCce-EEEECCEEcCCCCccccC
Q 033570 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~ 59 (116)
.+-|+.+.||+++...|..+.++++++- -|..++.....+.+++++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 4668999999999999999999987654 444466544456676654
No 191
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=70.73 E-value=10 Score=22.21 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
...+.|.|+++.+=.++|+.+++.+++.+....-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 35789999999999999999999999988877544
No 192
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=70.15 E-value=9.4 Score=26.91 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=40.4
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEEC-------CEEcCCCCccccC--CCCCCCEEEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLADY--NIQKESTLHLV 70 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~-------g~~L~d~~tL~~~--gi~~g~~I~v~ 70 (116)
|.|-..+|....+.|++++|+++|-+.++.+.++..+.-+.++. -+.|.|+..+-+. ....++.+.+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~~~l~f~ 87 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASESKFLFR 87 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSSCEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHHHhccCCCceEEEe
Confidence 45556678889999999999999999998887765444433331 3457776654332 23344444433
No 193
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=70.02 E-value=4.1 Score=23.51 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhCCC-----CCceEEEECC
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~i~-----~~~q~L~~~g 47 (116)
.+.+.|+++.+..+|..+|.++++.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46789999999999999999999965 3556777754
No 194
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=68.79 E-value=12 Score=23.03 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=40.6
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC-C-------CCCceEEEE---CCE--EcCC-CCccccCCCC
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-I-------PPDQQRLIF---AGK--QLED-GRTLADYNIQ 62 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~-i-------~~~~q~L~~---~g~--~L~d-~~tL~~~gi~ 62 (116)
|.+=.++|-...++++.+.|+.++|+.+.++.+ . .++...+.. .|. .+.| ++.|.+...-
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 444556888889999999999999999988743 2 233333332 234 3644 5788887654
No 195
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=68.51 E-value=10 Score=22.73 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=31.4
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEE-ECCE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~-~~g~ 48 (116)
+.|.|+++.|=.++|+.|++.+++.+....-+ ..|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 88999999999999999999999999888543 5554
No 196
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.96 E-value=15 Score=21.55 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
...+.|.|++..+=.++|+.+++.+++.+....-+
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 35789999999999999999999999988877554
No 197
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=65.58 E-value=2 Score=26.54 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=46.0
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCC--CCceEEEE---CCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~--~~~q~L~~---~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
....+.|..+.-|+.+-.+|-+...++ .++--|-. +-.+|.-..+|..|||..++.+.+...
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 567788998999999999998887654 33444443 223678899999999999888766543
No 198
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=62.56 E-value=21 Score=28.79 Aligned_cols=59 Identities=10% Similarity=0.246 Sum_probs=40.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhhC--CCCCc--------eEEEECCE--E----cCC--CCccccCCCCCCCEEEEE
Q 033570 12 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q----LED--GRTLADYNIQKESTLHLV 70 (116)
Q Consensus 12 ~~~i~v~~~~TV~~LK~~I~~~~~--i~~~~--------q~L~~~g~--~----L~d--~~tL~~~gi~~g~~I~v~ 70 (116)
...+.++++.|+.+|-+.+..+.. +.... .+++|... . ..+ +++|+++|+.+|+.|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 356788888999999999988643 32222 34556532 1 112 678999999999998875
No 199
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=61.48 E-value=20 Score=20.41 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=41.5
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+|.|..++|..+ .++...|+.++-..|....+- ...--..+|+..+-+.. +++|+.|.++..
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~--~~v~AkVNG~~v~L~~~-----L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN--RMIGAKVDGRIVPIDYK-----VKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH--TEEEEEETTEEECTTCB-----CCTTCBEEEEEC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc--ceEEEEECCEEcCCCcc-----cCCCCEEEEEcc
Confidence 578888888754 566777999988887665542 12223458887765444 456888887653
No 200
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=58.70 E-value=18 Score=21.36 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=40.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCc-eEEEECCEEcC-CCCccccCC--CCCCCEEEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLE-DGRTLADYN--IQKESTLHLVL 71 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~-q~L~~~g~~L~-d~~tL~~~g--i~~g~~I~v~~ 71 (116)
-.+-|+.+.|++++...|..+.++++++ +-|..+...+. .+.+++++- -+++..+++.-
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Y 84 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHY 84 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEE
Confidence 4578899999999999999999997775 45555766543 366666541 12445555543
No 201
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=54.31 E-value=31 Score=20.33 Aligned_cols=57 Identities=7% Similarity=0.070 Sum_probs=38.8
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcC-CCCccccCC--CCCCCEEEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYN--IQKESTLHLVL 71 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~g--i~~g~~I~v~~ 71 (116)
-.+.|+.+.|++++...|.++.++ +.+-|..+...+. .+.+++++- -+++..+++.-
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Y 84 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSY 84 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEE
Confidence 346799999999999999999998 5666666776443 366666541 12355555543
No 202
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=52.78 E-value=27 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=30.2
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
..+.|.|+++.+=.++|+.|++.+++.+....-+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 127 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5689999999999999999999999998877543
No 203
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=52.74 E-value=33 Score=20.13 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.7
Q ss_pred EEEEcCCC-CEEEEEec--CCCCHHHHHHHHHHhhCCCCCceEEEECC
Q 033570 3 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 3 v~Vk~~~g-~~~~i~v~--~~~TV~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
|.||+.-+ ....+.++ ...+-.+|..+++....++.....+.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 56777644 33456665 45799999999999999887788888843
No 204
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=50.17 E-value=34 Score=22.24 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.6
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
...+.|.|+...+=.++|+.|+..+++.+....-+
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 121 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTL 121 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 35789999999999999999999999988877544
No 205
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=48.55 E-value=28 Score=20.62 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++...+|....+++.+..|+.+.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHH
Confidence 6888899999999999999998773
No 206
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=48.39 E-value=35 Score=21.96 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=30.1
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
..+.|.|+...+=.++|+.+++.+++.+....-+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 113 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTL 113 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 5788999999999999999999999988877544
No 207
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=47.53 E-value=19 Score=26.34 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=38.5
Q ss_pred EEcCCCC----EEEEEecCCCCHHHHHHHHHHhhCCC-CCceEEEE--C--CE--EcCCCCcccc
Q 033570 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF--A--GK--QLEDGRTLAD 58 (116)
Q Consensus 5 Vk~~~g~----~~~i~v~~~~TV~~LK~~I~~~~~i~-~~~q~L~~--~--g~--~L~d~~tL~~ 58 (116)
|...+|+ ...+.+++.+|+.+|-..|.++.|+. .+..-|.+ . |. -|+.+..|.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 3445666 88999999999999999999999984 23345544 2 22 3666666654
No 208
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=47.01 E-value=45 Score=20.10 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhCCCCC--ceEEE--ECCEEcCCCCccccCCCCCCCEEEEEEe
Q 033570 21 DTIDNVKAKIQDKEGIPPD--QQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 21 ~TV~~LK~~I~~~~~i~~~--~q~L~--~~g~~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
.+..+|+.+..++++++.. ..+|+ -.|..++|+.=+..+. ++ ++.+++.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~n-T~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SN-TKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SC-CEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CC-CEEEEEc
Confidence 3799999999999999753 35665 3699987765444432 34 4444444
No 209
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=46.18 E-value=24 Score=21.04 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=37.8
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEc-CCCCccccCC--CCCCCEEEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYN--IQKESTLHLVL 71 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L-~d~~tL~~~g--i~~g~~I~v~~ 71 (116)
-.+.|+.+.|++++...|.++.++. .+-|..+...+ ..+.+++++- -+++..+++..
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Y 89 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNY 89 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEE
T ss_pred cEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEE
Confidence 4578899999999999999999987 55554455344 3466766551 12234455544
No 210
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=46.06 E-value=29 Score=24.71 Aligned_cols=34 Identities=9% Similarity=0.262 Sum_probs=28.3
Q ss_pred CEEEEEcCCCCEEEEEecC--CCCHHHHHHHHHHhhCCCC
Q 033570 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP 38 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~--~~TV~~LK~~I~~~~~i~~ 38 (116)
++|.|..++|....++++. .+|+.+|- +..|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCc
Confidence 4788999999999999999 89999994 3467754
No 211
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=45.50 E-value=30 Score=20.31 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=24.8
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHh
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~ 33 (116)
++|...+|-+|.++|+.+.-+..-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 5566778999999999998888777777654
No 212
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=43.84 E-value=47 Score=19.39 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=41.9
Q ss_pred CEEEEEcCCCCEEEEEecC-CCCHHHHHHHHHHhh----CCCCCc-eEE---EE-CCEEcCCCCccccCCCCCCCEEEEE
Q 033570 1 MQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKE----GIPPDQ-QRL---IF-AGKQLEDGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~-~~TV~~LK~~I~~~~----~i~~~~-q~L---~~-~g~~L~d~~tL~~~gi~~g~~I~v~ 70 (116)
|+|+|.. ++..+.+.+.+ +.||..|-++-..++ +-.++. ..+ .+ +|-+|+.+..|.+. +.+.+.|...
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 7888988 45667777744 569999877665554 222222 222 23 67788877787775 3355555443
No 213
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=43.27 E-value=17 Score=24.55 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=35.4
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEE
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~ 45 (116)
+|.|...+|..+.++=..+.-+..|++.+...++++.+.-.+..
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~ 129 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSL 129 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTT
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeec
Confidence 46677778888889888888899999999999999876554443
No 214
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=40.67 E-value=38 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=30.2
Q ss_pred CEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 11 ~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
..+.|.|+.+.+=.++|+.|++.+++.+.....+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 123 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEee
Confidence 5788999999999999999999999988877554
No 215
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=40.52 E-value=53 Score=19.90 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.4
Q ss_pred EEEEcC-CCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 3 v~Vk~~-~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
|.||.- .|++..+.++..-+..+|..++...+|-+ +-|.|...
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~n~ 52 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYTNN 52 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEECSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEecc
Confidence 444444 67888999999999999999999999863 45666543
No 216
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=38.85 E-value=22 Score=21.07 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=29.9
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCcc-ccCCCCCCCEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHL 69 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~gi~~g~~I~v 69 (116)
+.+...+......|++.|++.++++++. +.++..| .++|+.+-..+.+
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~~---------I~~d~~l~~dLGlDSL~~veL 66 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDADK---------VTEDASFKDDLGADSLDIAEL 66 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGGG---------CCTTCBTTTTSCCCHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChhh---------CCCCCcchhhcCCCcHHHHHH
Confidence 4456666777889999999999987653 4566667 7777755444433
No 217
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=38.53 E-value=54 Score=20.32 Aligned_cols=27 Identities=4% Similarity=0.107 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhh-CCCCCceEEEECC
Q 033570 21 DTIDNVKAKIQDKE-GIPPDQQRLIFAG 47 (116)
Q Consensus 21 ~TV~~LK~~I~~~~-~i~~~~q~L~~~g 47 (116)
.+...|+.+|...+ ++......|.|..
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 38999999999998 4555678888853
No 218
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=37.33 E-value=35 Score=22.24 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=19.6
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK 27 (116)
.|.+.- +|+.+.+++++++|+.++-
T Consensus 5 ~i~~~v-NG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 5 TINLNL-NGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEEE-TTEEEEEEECSSSBHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCCHHHHH
Confidence 455544 8899999999999988853
No 219
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=36.86 E-value=37 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=19.9
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (116)
.|.+.- +|+.+.+++++++|+.++-.
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 5 HIELTI-NGHPVEALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHH
Confidence 455543 89999999999999988443
No 220
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=36.60 E-value=49 Score=19.43 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++...+|+.+.+++.+.+|+.+.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHH
Confidence 5777767888889999999888653
No 221
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=35.70 E-value=11 Score=28.49 Aligned_cols=57 Identities=12% Similarity=0.289 Sum_probs=27.4
Q ss_pred EEEecCCCCHHHHHHHHHHhhC--CCCCc--------eEEEECCE--EcC------CCCccccCCCCCCCEEEEE
Q 033570 14 TLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--QLE------DGRTLADYNIQKESTLHLV 70 (116)
Q Consensus 14 ~i~v~~~~TV~~LK~~I~~~~~--i~~~~--------q~L~~~g~--~L~------d~~tL~~~gi~~g~~I~v~ 70 (116)
.+.++++.|+.+|-+.+..+.. +.... .+++|... .|+ -+++|+++|+.+|+.|.+.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 3455666777788888877533 32212 24555432 111 1567999999999988764
No 222
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=34.75 E-value=41 Score=21.83 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHHHH
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK~~ 29 (116)
|.|.+.. +|+.+.+++++++|+.+.-..
T Consensus 10 m~i~~~i-ng~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISATI-NGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEEE-CCEEEEEecCCCCcHHHHHHh
Confidence 3455544 888899999999999875443
No 223
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=34.31 E-value=58 Score=24.18 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=36.8
Q ss_pred CCCCEEEEEecCCCCHHHHHHHHH--HhhCC---CCCceEEEE----CC--EEcCCCCccccC
Q 033570 8 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIF----AG--KQLEDGRTLADY 59 (116)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~--~~~~i---~~~~q~L~~----~g--~~L~d~~tL~~~ 59 (116)
++|....+.+++.+||.++-..|. .+.|+ .++..-|.+ .| .-|+++.+|.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 677778899999999999999998 56674 334444433 22 346777777663
No 224
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=34.29 E-value=28 Score=19.22 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=16.5
Q ss_pred CccccCCCCCCCEEEEEEecCCC
Q 033570 54 RTLADYNIQKESTLHLVLRLRGG 76 (116)
Q Consensus 54 ~tL~~~gi~~g~~I~v~~~~~gg 76 (116)
.-|.+.|+.+|+.|.+.-+.+.|
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g 51 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG 51 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC
T ss_pred HHHHHCCCCCCCEEEEEEecCCC
Confidence 45888899999999888765444
No 225
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.22 E-value=43 Score=21.65 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=18.1
Q ss_pred CCCEEEEEecCCCCHHHHHHHH
Q 033570 9 TGKTITLEVESSDTIDNVKAKI 30 (116)
Q Consensus 9 ~g~~~~i~v~~~~TV~~LK~~I 30 (116)
+|+.+.+++++++|+.+.-...
T Consensus 10 NG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 10 NGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp TTEEEEEEEETTCBHHHHHHHT
T ss_pred CCEEEEEecCCcCcHHHHHHHc
Confidence 8999999999999998855443
No 226
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=34.10 E-value=37 Score=20.20 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=23.6
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHh
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~ 33 (116)
++|...+|-+|.++|+.+.-+..-|..|+..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4566678999999999988777766666543
No 227
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=33.84 E-value=66 Score=18.62 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK 27 (116)
+|++...+|....+++.+..|+.+.-
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLA 30 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 56777678888899999999987643
No 228
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=33.13 E-value=80 Score=18.94 Aligned_cols=27 Identities=4% Similarity=0.090 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHhhC-CCCCceEEEECC
Q 033570 21 DTIDNVKAKIQDKEG-IPPDQQRLIFAG 47 (116)
Q Consensus 21 ~TV~~LK~~I~~~~~-i~~~~q~L~~~g 47 (116)
.|..+|+.+|...+. +......|.|..
T Consensus 42 ~s~~~L~~~V~~lFp~l~~~~f~l~Y~D 69 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALRPGGFQAHYRA 69 (102)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred ccHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 379999999999974 555567888853
No 229
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=32.79 E-value=48 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=19.7
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK~ 28 (116)
.|.+.- +|+.+.+++++++|+.++-.
T Consensus 5 ~i~~~v-NG~~~~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 5 IITVNV-NGKAQEKAVEPRTLLIHFLR 30 (163)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHH
T ss_pred eEEEEE-CCEEEEEecCCCCcHHHHHH
Confidence 344443 89999999999999988443
No 230
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=32.32 E-value=42 Score=16.65 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhCCCCC
Q 033570 23 IDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~ 39 (116)
+.+|-..+++++|+++.
T Consensus 18 ~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 18 LAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHCCCcc
Confidence 35677788899999753
No 231
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=31.91 E-value=65 Score=18.94 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=20.1
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++...+|+...+++.+..|+.+.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHH
Confidence 5667667899889999999998763
No 232
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=29.86 E-value=77 Score=27.07 Aligned_cols=69 Identities=29% Similarity=0.265 Sum_probs=46.7
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC--------CCCCceEEEE-C--CE--EcCC-CCccccCCCCCCCEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QLED-GRTLADYNIQKESTLH 68 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~--------i~~~~q~L~~-~--g~--~L~d-~~tL~~~gi~~g~~I~ 68 (116)
|.+=-++|-...++|+.+.|++++|+.|.++.. ..++...+.+ + |. .+.| ++.|.++..- ...+.
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~~~-~p~l~ 132 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPF-LPVLK 132 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGSTTTTSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGCBS-SSCEE
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHHHHhCCchhccCCcceeEEEEecCCceEEEeecCceeeEeeccc-ceEEE
Confidence 445566899999999999999999999988732 1355556665 3 32 4544 6788887643 33455
Q ss_pred EEEe
Q 033570 69 LVLR 72 (116)
Q Consensus 69 v~~~ 72 (116)
++-+
T Consensus 133 lve~ 136 (1092)
T 2y3a_A 133 LVTR 136 (1092)
T ss_dssp EEES
T ss_pred EEec
Confidence 5544
No 233
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=29.42 E-value=46 Score=20.23 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred CCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEEECCE--EcCCCCccccCCCCCCCEEEEEEe
Q 033570 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 8 ~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~--~L~d~~tL~~~gi~~g~~I~v~~~ 72 (116)
+.++...+...++-++.+.-.-|-.++++..+...+...|. +|+-..+++.. +|..+.+..+
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l---dgqrl~Le~~ 88 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV---ASQTLVLDTP 88 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS---SSSCEEECCC
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh---cCcEEEEeeC
Confidence 46788889999999999999999999999988888877776 45556666665 4666655433
No 234
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=28.62 E-value=50 Score=21.22 Aligned_cols=62 Identities=11% Similarity=0.181 Sum_probs=42.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCC-CCC----ceEEE-----------------ECCEEc-CCCCccccCCCCCCCEEEE
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGI-PPD----QQRLI-----------------FAGKQL-EDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i-~~~----~q~L~-----------------~~g~~L-~d~~tL~~~gi~~g~~I~v 69 (116)
+.|..=.+.|+.+|-..|.+...- +.. .++++ +.|+.- +|+++|.+.+..-|+-|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 566777899999999988876321 000 11222 233332 5689999999999999999
Q ss_pred EEecC
Q 033570 70 VLRLR 74 (116)
Q Consensus 70 ~~~~~ 74 (116)
.+-.+
T Consensus 136 aI~pP 140 (143)
T 4a6q_A 136 AITPP 140 (143)
T ss_dssp EEECG
T ss_pred EEeCC
Confidence 88654
No 235
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=28.24 E-value=34 Score=18.62 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=17.6
Q ss_pred ccccCCCCCCCEEEEEEecC-CCC
Q 033570 55 TLADYNIQKESTLHLVLRLR-GGI 77 (116)
Q Consensus 55 tL~~~gi~~g~~I~v~~~~~-gg~ 77 (116)
-|.+.|+.+|+.|.+.-+.+ +|.
T Consensus 26 rL~~lGl~~G~~v~v~~~~p~~~p 49 (75)
T 2h3j_A 26 RLFSMGLLPGAALRVVRIAPLGDP 49 (75)
T ss_dssp HHHHHTCCTTCEEEEEECCTTSCC
T ss_pred HHHHcCCCCCCEEEEEEECCCCCC
Confidence 57888999999998877654 443
No 236
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=28.19 E-value=66 Score=17.86 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=27.6
Q ss_pred HHHhhCCCCCceEEEECCEEcC--CCCccccCCCCCCCEEEEEEec
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~--d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
-+++.|+.+.++-+..+|..+. +...+.++=-..+..+.+.+.-
T Consensus 39 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r 84 (91)
T 2vsp_A 39 PADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG 84 (91)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEe
Confidence 4566788888888889999886 3222222211127777777653
No 237
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=28.05 E-value=1.2e+02 Score=19.35 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=49.0
Q ss_pred CEEEEEcCCCCEE-EEEecCCCCHHHHHHHHHHhhCCCCC---ce---EEEECCEEcC-CCCccccCCCCCCCEEEEEEe
Q 033570 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPD---QQ---RLIFAGKQLE-DGRTLADYNIQKESTLHLVLR 72 (116)
Q Consensus 1 m~v~Vk~~~g~~~-~i~v~~~~TV~~LK~~I~~~~~i~~~---~q---~L~~~g~~L~-d~~tL~~~gi~~g~~I~v~~~ 72 (116)
++|.+...+|..+ .|-+...+...++.+..-++.+++.+ +. +++-.|++|. .+..=--|-+.+.....+++|
T Consensus 28 IRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR 107 (140)
T 3kh0_A 28 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLK 107 (140)
T ss_dssp EEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEE
T ss_pred EEEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEe
Confidence 3567776667665 48888888888888888888887543 33 3445788652 222223344555567777887
Q ss_pred cCCC
Q 033570 73 LRGG 76 (116)
Q Consensus 73 ~~gg 76 (116)
..++
T Consensus 108 ~k~~ 111 (140)
T 3kh0_A 108 KRTF 111 (140)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 6655
No 238
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=27.90 E-value=95 Score=18.14 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=35.0
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
|.+.-++++...++|-|-.|+.+--.++.+.-++.++.-...
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 667788999999999999999998888888888887765554
No 239
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=27.66 E-value=89 Score=18.12 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=20.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++...+|....+.+.+..|+.+.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLea 26 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQA 26 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777777888889999999998764
No 240
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=27.28 E-value=51 Score=21.24 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHhhCCCC--CceEEEE--CCEEcCCCCccccC
Q 033570 21 DTIDNVKAKIQDKEGIPP--DQQRLIF--AGKQLEDGRTLADY 59 (116)
Q Consensus 21 ~TV~~LK~~I~~~~~i~~--~~q~L~~--~g~~L~d~~tL~~~ 59 (116)
.+..+|+.+..+.++++. +..+|+. .|..++|+.=+..+
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL 124 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL 124 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC
Confidence 479999999999999965 4666664 68888775444443
No 241
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=26.60 E-value=99 Score=17.91 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.2
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~L 26 (116)
+|++...+|....+.+.+..|+.+.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5778777888888999999988663
No 242
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=26.59 E-value=87 Score=17.28 Aligned_cols=44 Identities=7% Similarity=-0.042 Sum_probs=29.1
Q ss_pred HHhhCCCCCceEEEECCEEcCCCC--ccccCCCCCCCEEEEEEecC
Q 033570 31 QDKEGIPPDQQRLIFAGKQLEDGR--TLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 31 ~~~~~i~~~~q~L~~~g~~L~d~~--tL~~~gi~~g~~I~v~~~~~ 74 (116)
+++.|+.+.++-+..+|..+.+.. .+..+--..+..+.+.+.-.
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~ 85 (91)
T 2pkt_A 40 AALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARS 85 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEE
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence 556788899999999999887644 22222112577887777643
No 243
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=26.52 E-value=91 Score=17.48 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=28.0
Q ss_pred HHHhhC-CCCCceEEEECCEEcCCC--Cccc-cCCCCCCCEEEEEEec
Q 033570 30 IQDKEG-IPPDQQRLIFAGKQLEDG--RTLA-DYNIQKESTLHLVLRL 73 (116)
Q Consensus 30 I~~~~~-i~~~~q~L~~~g~~L~d~--~tL~-~~gi~~g~~I~v~~~~ 73 (116)
-+++.| +.+.++-+..+|..+.+. ..+. .+. ..+..+.+.+..
T Consensus 42 pA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R 88 (97)
T 1n7e_A 42 LAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKK 88 (97)
T ss_dssp HHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEC
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEe
Confidence 445568 889999999999988642 1111 111 467788777753
No 244
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=26.44 E-value=46 Score=20.24 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=22.4
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHH
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~ 32 (116)
++|...+|-.|.++|+.+.-+..-|..|+.
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~er 67 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIER 67 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHH
Confidence 456667899999999998776666665554
No 245
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=26.23 E-value=1e+02 Score=18.88 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDN 25 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~ 25 (116)
+|++...+|....+++.+..|+.+
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~ 46 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVME 46 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHH
Confidence 677877889888999999999876
No 246
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=26.17 E-value=99 Score=24.70 Aligned_cols=58 Identities=17% Similarity=0.355 Sum_probs=37.2
Q ss_pred EEEEEecC-CCCHHHHHHHH-HHhhCCCCCce-------EEEECCEE--cCC--CCccccCCCCCCCEEEE
Q 033570 12 TITLEVES-SDTIDNVKAKI-QDKEGIPPDQQ-------RLIFAGKQ--LED--GRTLADYNIQKESTLHL 69 (116)
Q Consensus 12 ~~~i~v~~-~~TV~~LK~~I-~~~~~i~~~~q-------~L~~~g~~--L~d--~~tL~~~gi~~g~~I~v 69 (116)
...+.++. +.|+.+|.+.+ .+++|+....+ +++|.... .++ .++|+++++.+|+.+.+
T Consensus 449 ~~~~~~~~~~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~ly~~~~~~~~~~l~~~l~el~v~~~~~~~v 519 (640)
T 1y8q_B 449 EVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQA 519 (640)
T ss_dssp EEEEEECTTTCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEEECSSSSSSTTGGGSBGGGGTCCTTCEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHhhCCCCceEEEEcCCCcEEEeccchhhHHhhhCcHHHhCccCCcEEEe
Confidence 45566765 67999999885 66777654322 34453321 222 56799999998887654
No 247
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=25.65 E-value=92 Score=17.20 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=29.7
Q ss_pred HHHhhCCCCCceEEEECCEEcCCCCccccC--CCCCCCEEEEEEe
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 72 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~--gi~~g~~I~v~~~ 72 (116)
.+++.|+.+.+.-+..+|+.+.+-..+.+. ....+..+.+.+.
T Consensus 31 ~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~ 75 (87)
T 2i6v_A 31 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75 (87)
T ss_dssp HHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 556779999999999999998764333221 1245777777664
No 248
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=25.64 E-value=13 Score=20.19 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=13.8
Q ss_pred HHHHcCCCcccccccccc
Q 033570 85 LARKYNQDKMICRKSHTR 102 (116)
Q Consensus 85 ~~~~~~~~~~~c~~~~~~ 102 (116)
.+.+++..+..||+|=.+
T Consensus 9 fGKr~~ktH~~CrRCG~~ 26 (57)
T 1vq8_1 9 QGKKNTTTHTKCRRCGEK 26 (57)
T ss_dssp HTTCCCCCEEECTTTCSE
T ss_pred ccccCCCccccccccCCh
Confidence 455778889999998654
No 249
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=25.60 E-value=73 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhCCCCCceEEEEC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
..|-+.+++++|+|++++-+.|.
T Consensus 77 ~~i~~~l~~~Lgi~~~riyI~f~ 99 (114)
T 3djh_A 77 KLLCGLLAERLRISPDRVYINYY 99 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEE
Confidence 55666777889999999988763
No 250
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.46 E-value=1.2e+02 Score=18.32 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCCEEEEEecC--CCCHHHHHHHHHHhhCCCCCceEEEE
Q 033570 9 TGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 9 ~g~~~~i~v~~--~~TV~~LK~~I~~~~~i~~~~q~L~~ 45 (116)
.|....|.|+. +.|-.+|..++...+++. .+.|.|
T Consensus 22 ~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY 58 (101)
T 1wj6_A 22 KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY 58 (101)
T ss_dssp TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEE
T ss_pred cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEE
Confidence 67778888855 889999999999999986 455655
No 251
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=25.38 E-value=40 Score=19.14 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.8
Q ss_pred ccccCCCCCCCEEEEEEecC-CCC
Q 033570 55 TLADYNIQKESTLHLVLRLR-GGI 77 (116)
Q Consensus 55 tL~~~gi~~g~~I~v~~~~~-gg~ 77 (116)
-|.+.|+.+|+.|.+.-+.+ +|.
T Consensus 30 rL~~mGl~pG~~V~V~~~~p~~gp 53 (86)
T 2k4y_A 30 KIMDMGIVRGTEIYIEGKAPMGDP 53 (86)
T ss_dssp HHHHHTCCTTCEEEEEEECTTSCS
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCC
Confidence 58888999999998887654 443
No 252
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=25.17 E-value=55 Score=18.53 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.3
Q ss_pred ccccCCCCCCCEEEEEEecC-CCC
Q 033570 55 TLADYNIQKESTLHLVLRLR-GGI 77 (116)
Q Consensus 55 tL~~~gi~~g~~I~v~~~~~-gg~ 77 (116)
-|.+.|+.+|+.|.++-+.+ ||.
T Consensus 25 rL~~mGl~pG~~V~Vi~~ap~ggP 48 (83)
T 2lx9_A 25 KLLSLGMLPGSSFNVVRVAPLGDP 48 (83)
T ss_dssp HHHHSSCCSSSEEEEEEECTTTCC
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCc
Confidence 58899999999999987754 443
No 253
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=25.14 E-value=1e+02 Score=17.69 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHhhCCCCCceEEEECCEEcCCCCccccC--CCCCCCEEEEEEe
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 72 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~--gi~~g~~I~v~~~ 72 (116)
.+++.|+.+.+.-+..+|+.+.+-..+..+ ....+..+.+.+.
T Consensus 49 ~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~ 93 (105)
T 2i4s_A 49 LFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 93 (105)
T ss_dssp HHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEE
Confidence 445568888888888899888765444322 1245677776664
No 254
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=25.13 E-value=1.1e+02 Score=17.91 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=29.9
Q ss_pred CCCEEEEEecC--CCCHHHHHHHHHHhhCCCCCceEEEEC
Q 033570 9 TGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 9 ~g~~~~i~v~~--~~TV~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
.|....+.|+. +.|-.+|...+...++++ .+.+.|.
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~ 51 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL 51 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE
Confidence 67788888866 889999999999999986 6677664
No 255
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=25.12 E-value=75 Score=18.74 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCCCCCceEEEEC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
..|-+.+++..|++++++-+.|.
T Consensus 78 ~~i~~~l~~~Lgi~~~riyI~f~ 100 (114)
T 4dh4_A 78 AALSAACERHLGVPKNRIYTTFT 100 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCcCcccEEEEEE
Confidence 45556667778999999988764
No 256
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=24.91 E-value=89 Score=17.83 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=19.3
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK 27 (116)
+|++...++....+++++..|+.+.-
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~ 31 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAA 31 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHH
Confidence 46666556777889999999987754
No 257
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=24.87 E-value=1e+02 Score=17.65 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=32.3
Q ss_pred EecCCCCHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCcc-ccCCCCCCCEEEEEEe
Q 033570 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLR 72 (116)
Q Consensus 16 ~v~~~~TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~gi~~g~~I~v~~~ 72 (116)
....++....|++.|++..+++++. +.++..| .++|+.+-..+.++..
T Consensus 17 ~~t~~~i~~~l~~iia~~l~~~~~~---------i~~d~~l~~dLGlDSL~~vel~~~ 65 (97)
T 3ejb_A 17 GSHMSTIEERVKKIIGEQLGVKQEE---------VTNNASFVEDLGADSLDTVELVMA 65 (97)
T ss_dssp -CCCCCHHHHHHHHHHHHSCCCTTT---------SCTTCBTTTTTCCCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCcCHHH---------CCCCCCchhhcCCCHHHHHHHHHH
Confidence 4444556788999999999987653 4566677 6888876655554443
No 258
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=24.21 E-value=84 Score=16.28 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=13.1
Q ss_pred HHHHHHHhhCCCCCceEEEE
Q 033570 26 VKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 26 LK~~I~~~~~i~~~~q~L~~ 45 (116)
|-+.+.+.+|+|++...+.+
T Consensus 22 it~~~~~~lg~~~~~v~V~i 41 (62)
T 3m20_A 22 LTSVAAEIYGMDRSAITILI 41 (62)
T ss_dssp HHHHHHHHHTCCTTSCEEEE
T ss_pred HHHHHHHHhCcCcceEEEEE
Confidence 33444556789988877654
No 259
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.17 E-value=81 Score=18.42 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=15.5
Q ss_pred HHHHHHHHhhCCCCCceEEEEC
Q 033570 25 NVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 25 ~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
.|-+.+++..|++++++.+.+.
T Consensus 78 ~i~~~l~~~lgi~~~~v~I~~~ 99 (113)
T 1hfo_A 78 KLFDHLNTKLGIPKNRMYIHFV 99 (113)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHhCcCcCeEEEEEE
Confidence 3444556678999999887763
No 260
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=24.07 E-value=1e+02 Score=17.43 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCEEEEEecCCCCHHHHH
Q 033570 1 MQIFVKTLTGKTITLEVESSDTIDNVK 27 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~TV~~LK 27 (116)
++|++...+| ...+++++..|+.+.-
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~ 26 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAA 26 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHH
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHH
Confidence 3677776666 6778999999987643
No 261
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.00 E-value=25 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCEEEEEecCCCCHHHHHHHHHHhhCCCCCceE
Q 033570 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (116)
Q Consensus 10 g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~ 42 (116)
+..+.+.|+++.+=.++|+.|++.+++.+....
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVN 163 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKVN 163 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEEE
Confidence 357889999999999999999999999877663
No 262
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=23.85 E-value=82 Score=18.49 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=15.5
Q ss_pred HHHHHHHHhhCCCCCceEEEEC
Q 033570 25 NVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 25 ~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
.|-+.+++..|+++++..+.+.
T Consensus 79 ~i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 1uiz_A 79 LLCDILTKQLNIPANRVYINYY 100 (115)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHhCcCcceEEEEEE
Confidence 3444556678999999888763
No 263
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=23.82 E-value=67 Score=20.07 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhhCCCCCceEEEE--CCEEcCCCCccccC
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~~--~g~~L~d~~tL~~~ 59 (116)
+..+|+.+..+.+++ .+..+|+. .|..++|+.=...+
T Consensus 55 SL~EL~~K~~~~l~l-~~~~~lvLeeDGT~VddEeYF~tL 93 (122)
T 1d4b_A 55 TRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLL 93 (122)
T ss_dssp CSSTHHHHHHHHHSC-CSSCEEEETTTTEEECSTHHHHHS
T ss_pred CHHHHHHHHHHHhcc-CCCcEEEEEeCCcEEechhHhhcC
Confidence 689999999999999 35666664 79999776544443
No 264
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=23.75 E-value=81 Score=18.88 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhCCCCCceEEEEC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
..|-+.+++++|+|++++-+.|.
T Consensus 78 ~~i~~~l~~~Lgi~~~RiyI~f~ 100 (117)
T 3kan_A 78 AHFFEFLTKELALGQDRILIRFF 100 (117)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEEE
Confidence 45666777889999999988764
No 265
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=23.36 E-value=85 Score=18.42 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEC
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
+..|-+.+++..|+++++..+.+.
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 2xcz_A 77 SELVCGHIEQNLGIPADRIYIGFE 100 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEE
Confidence 455666667778999999988763
No 266
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=23.35 E-value=48 Score=18.68 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.0
Q ss_pred ccccCCCCCCCEEEEEEecC
Q 033570 55 TLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 55 tL~~~gi~~g~~I~v~~~~~ 74 (116)
-|.+.|+.+|..|.++-+.+
T Consensus 30 rL~~lGl~pG~~v~V~~~~p 49 (85)
T 3mhx_A 30 RLRELGFVKGEEVRMVAKGP 49 (85)
T ss_dssp HHHHTTCCTTCEEEEEESCS
T ss_pred HHHHCCCCCCCEEEEEEeCC
Confidence 48899999999999987754
No 267
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=23.34 E-value=1e+02 Score=16.93 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHhhCCCCCceEEEECCEEcCCC--CccccCCCCCCCEEEEEEec
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~d~--~tL~~~gi~~g~~I~v~~~~ 73 (116)
-+++.|+.+.++-+..+|..+.+. ..+..+=-..+..+.+.+.-
T Consensus 40 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r 85 (90)
T 2he4_A 40 PAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVG 85 (90)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEEC
T ss_pred hHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEc
Confidence 355678888999999999988664 23322211236777776653
No 268
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=23.29 E-value=1.6e+02 Score=19.19 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhhCCCCC
Q 033570 13 ITLEVESSDTIDNVKAKIQDKEGIPPD 39 (116)
Q Consensus 13 ~~i~v~~~~TV~~LK~~I~~~~~i~~~ 39 (116)
..|.|+.+.|..+|-..|...+|..-.
T Consensus 24 Rri~Vp~~~TL~~LH~vIq~afgw~~~ 50 (188)
T 2i1s_A 24 RRIQVPENYTFLDLHKAIQAVMDWEDY 50 (188)
T ss_dssp EEEEEETTCBHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 468999999999999999999997543
No 269
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=22.99 E-value=78 Score=17.70 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=29.5
Q ss_pred HHHhhCCCCCceEEEECCEEcCCC--CccccCCCCCCCEEEEEEecCC
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 75 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~d~--~tL~~~gi~~g~~I~v~~~~~g 75 (116)
-+++.|+.+.++-+..+|..+.+. ..+...--..+..+.+.+.-.+
T Consensus 42 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~ 89 (96)
T 2v90_A 42 PAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPE 89 (96)
T ss_dssp HHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCC
T ss_pred hHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCC
Confidence 355678889999999999988762 2222211123788887776433
No 270
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=22.92 E-value=81 Score=17.08 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=8.6
Q ss_pred CCCCCceEEEECCEEcC
Q 033570 35 GIPPDQQRLIFAGKQLE 51 (116)
Q Consensus 35 ~i~~~~q~L~~~g~~L~ 51 (116)
|+.+.++-+..+|..+.
T Consensus 40 Gl~~GD~I~~ing~~v~ 56 (83)
T 2kv8_A 40 GLRAGDQILAVNEINVK 56 (83)
T ss_dssp TCCTTCEEEEETTEECS
T ss_pred CCCCCCEEEEECCEECC
Confidence 44445555555555543
No 271
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=22.51 E-value=50 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.1
Q ss_pred CccccCCCCCCCEEEEEEecC
Q 033570 54 RTLADYNIQKESTLHLVLRLR 74 (116)
Q Consensus 54 ~tL~~~gi~~g~~I~v~~~~~ 74 (116)
.-|.+.|+.+|+.|.+.-+.+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p 46 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAP 46 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 358889999999999887754
No 272
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=22.27 E-value=93 Score=18.18 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCCCCceEEEECC
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
...|-+.+++..|++++++.+.+..
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 77 TSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3455556677789999999887653
No 273
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=22.19 E-value=89 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhCCCCCceEEEECC
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
...|-+.+++..|+|++++-+.|..
T Consensus 98 s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 98 TPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEEEE
Confidence 3556667778899999999887743
No 274
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=22.10 E-value=1.2e+02 Score=17.30 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=34.6
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhCCCCCceEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~i~~~~q~L~ 44 (116)
|.+.-++++...++|-|-.|+.+--.++.+.-++.++.-...
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 667788888899999999999998888888888887655544
No 275
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=21.94 E-value=1.1e+02 Score=16.72 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=12.7
Q ss_pred HHHHHHHhhCCCCCceEEEE
Q 033570 26 VKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 26 LK~~I~~~~~i~~~~q~L~~ 45 (116)
+-+.+.+.+|+|+++..+++
T Consensus 24 it~~l~~~lg~p~~~v~V~i 43 (76)
T 3ej9_A 24 LLRVISEATGEPRENIFFVI 43 (76)
T ss_dssp HHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHCcCcccEEEEE
Confidence 33444556799988876543
No 276
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.89 E-value=1.1e+02 Score=17.56 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=29.8
Q ss_pred HHHhhCCCCCceEEEECCEEcCCCCccccCC--CCCCCEEEEEEecC
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVLRLR 74 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~g--i~~g~~I~v~~~~~ 74 (116)
-+++.|+.+.++-+..+|..+.+...+.... ...+..+.+.+.-.
T Consensus 58 pA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~ 104 (110)
T 1x5q_A 58 PAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 104 (110)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEEEEEC
Confidence 3556688899999999999987633222211 13678888877643
No 277
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=21.64 E-value=31 Score=20.60 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHhhCCCCCce
Q 033570 20 SDTIDNVKAKIQDKEGIPPDQQ 41 (116)
Q Consensus 20 ~~TV~~LK~~I~~~~~i~~~~q 41 (116)
..|+.++.+.+++.+|++++++
T Consensus 4 ~it~~~I~~~Va~~f~v~~~dl 25 (101)
T 3pvv_A 4 MISAATIMAATAEYFDTTVEEL 25 (101)
T ss_dssp -CCHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHCCCHHHH
Confidence 4689999999999999987664
No 278
>3iz6_Z 40S ribosomal protein S30 (S30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.48 E-value=9.3 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=14.5
Q ss_pred CCCCCchHHHHHHcCCCcc
Q 033570 76 GIIEPSLMALARKYNQDKM 94 (116)
Q Consensus 76 g~~~~~~~~~~~~~~~~~~ 94 (116)
|++|+|++.++...++.+.
T Consensus 2 GKvHGSLarAGKVR~QTPK 20 (62)
T 3iz6_Z 2 GKVHGSLARAGKVRGQTPK 20 (62)
T ss_dssp HHHHHHHHHHHTTCCCCSS
T ss_pred CcccchhhccccccCCCCC
Confidence 4678888888887777765
No 279
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=21.47 E-value=97 Score=18.35 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHhhCCCCCceEEEEC
Q 033570 25 NVKAKIQDKEGIPPDQQRLIFA 46 (116)
Q Consensus 25 ~LK~~I~~~~~i~~~~q~L~~~ 46 (116)
.|-+.+++..|+++++..+.+.
T Consensus 79 ~i~~~l~~~lgi~~~~v~I~~~ 100 (119)
T 2os5_A 79 KITQFCQDTLKLPKDKVIITYF 100 (119)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHhCcCcccEEEEEE
Confidence 3444555668999999888763
No 280
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=21.36 E-value=73 Score=17.97 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHhhCCCCCceEEEECCEEcCC--CCccccCCCCCCCEEEEEEec
Q 033570 30 IQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 30 I~~~~~i~~~~q~L~~~g~~L~d--~~tL~~~gi~~g~~I~v~~~~ 73 (116)
-+++.|+.+.++-+..+|..+.+ ...+..+--..|..+.+.+..
T Consensus 46 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r 91 (99)
T 3khf_A 46 PAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTA 91 (99)
T ss_dssp HHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEC
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEE
Confidence 34566888999999999998863 222222211467888887764
No 281
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=21.25 E-value=97 Score=18.59 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhCCCCCceEEEECCE
Q 033570 23 IDNVKAKIQDKEGIPPDQQRLIFAGK 48 (116)
Q Consensus 23 V~~LK~~I~~~~~i~~~~q~L~~~g~ 48 (116)
+..|-+.+.+..|++++++.+.+..-
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (125)
T 2wkb_A 77 ADKITKILSNHLSVKPRRVYIEFRDC 102 (125)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 45566667778899999998876443
No 282
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=21.13 E-value=1.6e+02 Score=18.20 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=26.4
Q ss_pred EEEEEcCCC-CE-EEEEecCCCCHHHHHHHHHHhhCCC
Q 033570 2 QIFVKTLTG-KT-ITLEVESSDTIDNVKAKIQDKEGIP 37 (116)
Q Consensus 2 ~v~Vk~~~g-~~-~~i~v~~~~TV~~LK~~I~~~~~i~ 37 (116)
.|.|....+ .. ..|.|....|+.++-...-.+.|.+
T Consensus 9 ~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~ 46 (117)
T 2c5l_C 9 FVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYS 46 (117)
T ss_dssp EEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTS
T ss_pred EEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCc
Confidence 355666543 23 4579999999999988888887764
No 283
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.89 E-value=1.2e+02 Score=16.95 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.6
Q ss_pred EEEEEcCCCCEEEEEecCCCCHHHHH
Q 033570 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (116)
Q Consensus 2 ~v~Vk~~~g~~~~i~v~~~~TV~~LK 27 (116)
+|++...+| ...+++++.+|+.+.-
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~ 27 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAA 27 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHH
Confidence 567765676 6788999999987643
No 284
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=20.86 E-value=91 Score=19.24 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhCCCCCceEEEECC
Q 033570 24 DNVKAKIQDKEGIPPDQQRLIFAG 47 (116)
Q Consensus 24 ~~LK~~I~~~~~i~~~~q~L~~~g 47 (116)
..|-+.+++..|++++++-+.|..
T Consensus 99 ~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 99 SIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHhCcChhhEEEEEEE
Confidence 556677778899999999887744
No 285
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=20.84 E-value=95 Score=15.62 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=13.9
Q ss_pred HHHHHHHHhhCCCCCceEEEE
Q 033570 25 NVKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 25 ~LK~~I~~~~~i~~~~q~L~~ 45 (116)
.|-+.+.+.+|+|+++..+.+
T Consensus 22 ~i~~~l~~~lg~~~~~v~V~i 42 (61)
T 2opa_A 22 KVTEAVKETTGASEEKIVVFI 42 (61)
T ss_dssp HHHHHHHHHHCCCGGGCEEEE
T ss_pred HHHHHHHHHhCcCcCeEEEEE
Confidence 344445566799988877654
No 286
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=20.83 E-value=95 Score=15.64 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=13.1
Q ss_pred HHHHHHHhhCCCCCceEEEE
Q 033570 26 VKAKIQDKEGIPPDQQRLIF 45 (116)
Q Consensus 26 LK~~I~~~~~i~~~~q~L~~ 45 (116)
|-+.+.+.+|+|+++..+.+
T Consensus 23 i~~~l~~~lg~p~~~v~v~i 42 (62)
T 1otf_A 23 VSEAMANSLDAPLERVRVLI 42 (62)
T ss_dssp HHHHHHHHHTCCGGGCEEEE
T ss_pred HHHHHHHHhCcCcccEEEEE
Confidence 34445566799988876654
No 287
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=20.82 E-value=91 Score=18.18 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhhCCCCCceEEEECCEEcCCCCccccCCCCCCCEEEE
Q 033570 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (116)
Q Consensus 22 TV~~LK~~I~~~~~i~~~~q~L~~~g~~L~d~~tL~~~gi~~g~~I~v 69 (116)
....+++.|++.++++++ .+.++.+|.++|+.+-..+.+
T Consensus 18 i~~~l~~ila~~l~v~~~---------~I~~d~~L~dLGlDSL~~veL 56 (100)
T 1vku_A 18 LIAKFVEIASEKMGKDLE---------TVDEENTFKELGFDSIDVIDL 56 (100)
T ss_dssp HHHHHHHHHHHTTCCCCC---------SCCTTSBTTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHH---------HCCCCCCHHHcCCchHHHHHH
Confidence 356788888888888754 356667778888755444333
No 288
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=20.81 E-value=1.4e+02 Score=25.52 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=44.7
Q ss_pred EEEEcCCCCEEEEEecCCCCHHHHHHHHHHhhC--------CCCCceEEEE---CCE--Ec-CCCCccccCCCCCCCEEE
Q 033570 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF---AGK--QL-EDGRTLADYNIQKESTLH 68 (116)
Q Consensus 3 v~Vk~~~g~~~~i~v~~~~TV~~LK~~I~~~~~--------i~~~~q~L~~---~g~--~L-~d~~tL~~~gi~~g~~I~ 68 (116)
|.+=-++|-.+.++++.+.|+.++|+.+.++.. ..++...+.+ .|. .+ ++++.|.++..- -..+.
T Consensus 45 vd~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~-~~~l~ 123 (1091)
T 3hhm_A 45 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLK 123 (1091)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS-SSEEE
T ss_pred EEEEcCCCeEEEEEecCCCcHHHHHHHHHHHHHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEeecc-ceeEE
Confidence 344456888899999999999999999988653 2345555554 222 45 445667776543 34455
Q ss_pred EEEe
Q 033570 69 LVLR 72 (116)
Q Consensus 69 v~~~ 72 (116)
++-+
T Consensus 124 lve~ 127 (1091)
T 3hhm_A 124 VIEP 127 (1091)
T ss_dssp EECC
T ss_pred EEec
Confidence 5444
No 289
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=20.29 E-value=44 Score=21.57 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCEEEEEecCCC---CHHHHHHHH
Q 033570 1 MQIFVKTLTGKTITLEVESSD---TIDNVKAKI 30 (116)
Q Consensus 1 m~v~Vk~~~g~~~~i~v~~~~---TV~~LK~~I 30 (116)
|+|.+.. +++.+..++..+. |+.+|.+++
T Consensus 30 ~~I~i~~-~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 30 MRLRIRF-ESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CCEEEEE-TTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred eEEEEEE-CCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 5677765 6677888888888 898888765
No 290
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=20.22 E-value=1e+02 Score=18.03 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=28.9
Q ss_pred EEEEEcCCC--CEEEEEecCCCCHHHHHHHHHHhhCCCC
Q 033570 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (116)
Q Consensus 2 ~v~Vk~~~g--~~~~i~v~~~~TV~~LK~~I~~~~~i~~ 38 (116)
+|+|..... +++.+++...+-+..+-+.+....++.+
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 678876643 7788899888899999999977766653
No 291
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.14 E-value=1.1e+02 Score=18.48 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=40.8
Q ss_pred EEEEEcCCCCEE-EEEecCCCCHHHHHHHHHHhhCCC---CCceEEE---ECCEEcC-CCCccccCCCCCCCEEEEEEec
Q 033570 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI---FAGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (116)
Q Consensus 2 ~v~Vk~~~g~~~-~i~v~~~~TV~~LK~~I~~~~~i~---~~~q~L~---~~g~~L~-d~~tL~~~gi~~g~~I~v~~~~ 73 (116)
+|.+...+|..+ .|.+...+....+..+.-++.+++ +++..|+ -.|++|. .+..=--|.+.......+++|.
T Consensus 22 RVs~e~~~g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~~~~~~F~LR~ 101 (103)
T 1ef5_A 22 RISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRK 101 (103)
T ss_dssp EEEESSCSSCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECSSSCCEESSCCCCTTTTTCCCSCEEEEEEE
T ss_pred EEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCEEecCCCcceEEEEcCCCCccEEEee
Confidence 455554455443 367777777788777777777764 3445554 3466542 2222223444444566666664
Q ss_pred C
Q 033570 74 R 74 (116)
Q Consensus 74 ~ 74 (116)
.
T Consensus 102 k 102 (103)
T 1ef5_A 102 K 102 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 292
>3u5c_e 40S ribosomal protein S30-A, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Z* 3j16_E 3u5g_e
Probab=20.10 E-value=9.6 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=13.6
Q ss_pred CCCCCchHHHHHHcCCCcc
Q 033570 76 GIIEPSLMALARKYNQDKM 94 (116)
Q Consensus 76 g~~~~~~~~~~~~~~~~~~ 94 (116)
|++|+|+..++...++.+.
T Consensus 2 gKvHGSLarAGKVR~QTPK 20 (63)
T 3u5c_e 2 AKVHGSLARAGKVKSQTPK 20 (63)
T ss_dssp CCCBCCCTTTTHHHHHSCC
T ss_pred CcccchhhhcccccCCCCC
Confidence 6778888887766666554
Done!