Query 033572
Match_columns 116
No_of_seqs 117 out of 583
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03656 Pam16: Pam16; InterP 100.0 3.1E-38 6.7E-43 229.2 7.0 111 1-111 1-116 (127)
2 KOG3442 Uncharacterized conser 100.0 2.5E-34 5.5E-39 208.0 10.0 106 2-107 1-113 (132)
3 KOG0723 Molecular chaperone (D 100.0 2.4E-31 5.2E-36 188.3 10.7 102 1-105 1-108 (112)
4 PTZ00100 DnaJ chaperone protei 99.9 1.1E-22 2.5E-27 145.8 11.2 102 1-103 1-115 (116)
5 PHA03102 Small T antigen; Revi 98.7 5.5E-08 1.2E-12 72.8 7.5 56 54-109 4-63 (153)
6 PF00226 DnaJ: DnaJ domain; I 98.4 2.3E-06 4.9E-11 53.5 6.9 53 56-108 1-60 (64)
7 smart00271 DnaJ DnaJ molecular 98.3 3.2E-06 7E-11 51.9 5.8 49 56-104 2-57 (60)
8 PRK09430 djlA Dna-J like membr 98.3 4E-06 8.7E-11 67.1 7.8 56 51-106 196-264 (267)
9 cd06257 DnaJ DnaJ domain or J- 98.2 5.2E-06 1.1E-10 50.0 5.9 47 57-103 2-54 (55)
10 PTZ00037 DnaJ_C chaperone prot 97.9 2.5E-05 5.5E-10 66.2 6.7 58 50-107 23-82 (421)
11 PHA02624 large T antigen; Prov 97.8 7.6E-05 1.7E-09 66.5 7.3 57 54-110 10-70 (647)
12 PRK14299 chaperone protein Dna 97.7 7.1E-05 1.5E-09 60.2 5.6 55 52-106 1-60 (291)
13 KOG0721 Molecular chaperone (D 97.5 0.0002 4.4E-09 56.8 5.5 50 57-106 101-156 (230)
14 PRK14296 chaperone protein Dna 97.5 0.00018 4E-09 59.9 5.1 57 52-108 1-62 (372)
15 PRK10767 chaperone protein Dna 97.4 0.00027 5.9E-09 58.5 5.7 55 52-106 1-61 (371)
16 PRK14278 chaperone protein Dna 97.4 0.00027 5.8E-09 58.9 5.7 50 57-106 5-59 (378)
17 PRK14281 chaperone protein Dna 97.4 0.0004 8.6E-09 58.3 6.2 52 56-107 4-61 (397)
18 COG0484 DnaJ DnaJ-class molecu 97.4 0.00033 7.2E-09 59.0 5.6 51 57-107 6-62 (371)
19 PRK14280 chaperone protein Dna 97.4 0.00034 7.3E-09 58.2 5.5 56 52-107 1-61 (376)
20 PRK14288 chaperone protein Dna 97.4 0.00043 9.2E-09 57.6 6.1 51 57-107 5-61 (369)
21 PRK14300 chaperone protein Dna 97.4 0.00041 8.8E-09 57.7 5.7 52 56-107 4-60 (372)
22 PRK14287 chaperone protein Dna 97.3 0.00036 7.7E-09 58.0 5.3 55 52-106 1-60 (371)
23 PRK10266 curved DNA-binding pr 97.3 0.00056 1.2E-08 55.4 6.1 55 52-106 1-60 (306)
24 PRK14298 chaperone protein Dna 97.3 0.0005 1.1E-08 57.3 5.5 53 55-107 5-62 (377)
25 PRK14294 chaperone protein Dna 97.3 0.00059 1.3E-08 56.5 5.6 56 52-107 1-62 (366)
26 PRK14292 chaperone protein Dna 97.2 0.00074 1.6E-08 55.9 6.1 51 57-107 4-59 (371)
27 TIGR02349 DnaJ_bact chaperone 97.2 0.00069 1.5E-08 55.6 5.9 51 58-108 3-58 (354)
28 PRK14301 chaperone protein Dna 97.2 0.00054 1.2E-08 57.0 5.2 57 52-108 1-63 (373)
29 PRK14286 chaperone protein Dna 97.2 0.0006 1.3E-08 56.8 5.3 55 52-106 1-61 (372)
30 PRK14276 chaperone protein Dna 97.2 0.00059 1.3E-08 56.9 4.8 54 54-107 3-61 (380)
31 PRK14285 chaperone protein Dna 97.2 0.00054 1.2E-08 56.9 4.4 52 55-106 3-60 (365)
32 PRK14279 chaperone protein Dna 97.1 0.00075 1.6E-08 56.6 5.2 52 55-106 9-66 (392)
33 PRK14282 chaperone protein Dna 97.1 0.0009 2E-08 55.5 5.2 55 53-107 2-63 (369)
34 PRK14297 chaperone protein Dna 97.1 0.00086 1.9E-08 55.8 5.0 54 55-108 4-63 (380)
35 PRK14295 chaperone protein Dna 97.0 0.0014 3E-08 54.9 5.6 51 55-105 9-65 (389)
36 PRK14283 chaperone protein Dna 97.0 0.0015 3.1E-08 54.4 5.4 54 55-108 5-63 (378)
37 KOG0713 Molecular chaperone (D 96.9 0.0022 4.8E-08 53.5 6.0 55 53-107 14-74 (336)
38 PRK14277 chaperone protein Dna 96.9 0.0026 5.7E-08 53.1 6.0 52 55-106 5-62 (386)
39 PRK14289 chaperone protein Dna 96.8 0.0028 6.1E-08 52.8 5.7 54 54-107 4-63 (386)
40 PRK14291 chaperone protein Dna 96.8 0.003 6.6E-08 52.7 5.8 51 57-107 5-60 (382)
41 PRK14290 chaperone protein Dna 96.7 0.0037 7.9E-08 51.8 5.7 52 57-108 5-63 (365)
42 PRK14293 chaperone protein Dna 96.7 0.0042 9.1E-08 51.6 5.7 53 56-108 4-61 (374)
43 PRK14284 chaperone protein Dna 96.5 0.0063 1.4E-07 50.9 5.8 48 58-105 4-57 (391)
44 TIGR03835 termin_org_DnaJ term 96.4 0.0076 1.6E-07 55.3 5.9 50 57-106 4-58 (871)
45 PRK05014 hscB co-chaperone Hsc 96.3 0.015 3.4E-07 43.7 6.3 49 58-106 4-65 (171)
46 KOG1789 Endocytosis protein RM 96.2 0.043 9.4E-07 52.7 9.9 78 18-112 1260-1345(2235)
47 KOG0716 Molecular chaperone (D 96.2 0.011 2.3E-07 48.4 5.3 56 51-106 27-88 (279)
48 PF13446 RPT: A repeated domai 96.0 0.046 9.9E-07 34.3 6.6 33 51-83 1-33 (62)
49 KOG0715 Molecular chaperone (D 96.0 0.013 2.8E-07 47.6 5.0 61 49-109 37-102 (288)
50 COG2214 CbpA DnaJ-class molecu 95.9 0.027 5.9E-07 40.4 5.9 52 55-106 6-64 (237)
51 PRK01356 hscB co-chaperone Hsc 95.9 0.027 5.8E-07 42.4 6.0 49 58-106 5-64 (166)
52 KOG0712 Molecular chaperone (D 95.1 0.039 8.5E-07 46.2 5.0 47 58-104 7-56 (337)
53 PRK00294 hscB co-chaperone Hsc 94.6 0.1 2.3E-06 39.5 5.7 50 58-107 7-69 (173)
54 PRK03578 hscB co-chaperone Hsc 94.3 0.13 2.7E-06 39.1 5.6 53 55-107 6-71 (176)
55 PTZ00341 Ring-infected erythro 94.1 0.11 2.5E-06 49.0 5.9 53 54-106 572-629 (1136)
56 KOG0718 Molecular chaperone (D 93.8 0.17 3.6E-06 44.5 6.0 55 53-107 7-70 (546)
57 KOG0720 Molecular chaperone (D 90.6 0.28 6E-06 42.9 3.4 58 46-103 222-288 (490)
58 KOG0691 Molecular chaperone (D 89.5 1 2.3E-05 37.1 5.8 49 56-104 6-60 (296)
59 KOG0568 Molecular chaperone (D 88.3 2.6 5.7E-05 34.5 7.2 55 54-108 46-106 (342)
60 KOG0717 Molecular chaperone (D 88.2 1.2 2.7E-05 39.1 5.6 47 57-103 10-63 (508)
61 COG5407 SEC63 Preprotein trans 87.4 1.2 2.6E-05 39.4 5.1 52 58-109 101-163 (610)
62 KOG0624 dsRNA-activated protei 87.0 0.49 1.1E-05 40.8 2.5 55 51-105 390-453 (504)
63 PF11833 DUF3353: Protein of u 86.8 2.6 5.6E-05 32.6 6.2 46 64-111 1-47 (194)
64 PRK01773 hscB co-chaperone Hsc 85.7 2.1 4.5E-05 32.5 5.1 49 58-106 5-66 (173)
65 TIGR00714 hscB Fe-S protein as 81.7 3.6 7.7E-05 30.5 4.8 41 67-107 3-54 (157)
66 KOG1150 Predicted molecular ch 81.3 3.2 6.9E-05 33.3 4.6 30 57-86 55-86 (250)
67 KOG0719 Molecular chaperone (D 79.8 2.2 4.8E-05 34.7 3.3 47 56-102 15-69 (264)
68 COG1076 DjlA DnaJ-domain-conta 75.9 12 0.00027 27.8 6.3 32 52-83 110-141 (174)
69 KOG0714 Molecular chaperone (D 71.6 5.1 0.00011 30.1 3.3 49 55-103 3-58 (306)
70 KOG0550 Molecular chaperone (D 70.0 4.8 0.0001 35.3 3.1 38 51-88 368-409 (486)
71 PF12728 HTH_17: Helix-turn-he 69.5 2.9 6.3E-05 24.6 1.3 15 52-66 2-16 (51)
72 TIGR01764 excise DNA binding d 62.1 5.1 0.00011 22.4 1.3 15 52-66 2-16 (49)
73 PF08398 Parvo_coat_N: Parvovi 60.9 15 0.00032 24.0 3.4 41 68-110 21-62 (64)
74 PF11116 DUF2624: Protein of u 60.4 21 0.00045 24.5 4.3 56 38-97 17-77 (85)
75 PRK12544 RNA polymerase sigma 59.6 21 0.00045 26.9 4.6 26 90-115 180-205 (206)
76 PRK12532 RNA polymerase sigma 58.8 18 0.00038 26.5 4.0 25 91-115 169-193 (195)
77 PF08281 Sigma70_r4_2: Sigma-7 54.1 7.6 0.00017 22.8 1.1 28 47-74 22-49 (54)
78 cd04762 HTH_MerR-trunc Helix-T 53.3 8.9 0.00019 21.2 1.3 15 52-66 1-15 (49)
79 PRK05602 RNA polymerase sigma 52.2 17 0.00038 26.2 3.0 20 90-109 160-179 (186)
80 PRK12545 RNA polymerase sigma 50.1 25 0.00054 26.1 3.6 25 91-115 172-196 (201)
81 KOG0722 Molecular chaperone (D 48.8 16 0.00035 30.4 2.5 52 54-105 32-88 (329)
82 PF04545 Sigma70_r4: Sigma-70, 48.0 14 0.00031 21.5 1.7 30 47-80 16-45 (50)
83 TIGR00824 EIIA-man PTS system, 47.7 28 0.00061 24.1 3.4 36 58-93 30-76 (116)
84 cd04761 HTH_MerR-SF Helix-Turn 47.0 12 0.00027 21.1 1.3 15 52-66 1-15 (49)
85 PF01466 Skp1: Skp1 family, di 46.4 27 0.00059 22.6 3.0 25 49-73 43-67 (78)
86 PF12669 P12: Virus attachment 45.3 22 0.00048 22.3 2.3 22 6-27 3-26 (58)
87 smart00421 HTH_LUXR helix_turn 43.8 22 0.00047 20.0 2.0 19 49-67 16-34 (58)
88 PRK06811 RNA polymerase factor 42.5 27 0.00059 25.4 2.8 40 48-87 144-186 (189)
89 PF13950 Epimerase_Csub: UDP-g 40.3 60 0.0013 20.3 3.8 34 53-86 28-61 (62)
90 PRK12529 RNA polymerase sigma 39.1 27 0.00059 25.3 2.3 35 48-82 140-174 (178)
91 COG4977 Transcriptional regula 38.7 68 0.0015 26.8 4.8 49 48-104 233-283 (328)
92 PRK12516 RNA polymerase sigma 38.5 30 0.00065 25.5 2.5 33 48-80 129-161 (187)
93 PRK12527 RNA polymerase sigma 38.4 33 0.00072 24.0 2.6 31 49-79 119-149 (159)
94 PRK09645 RNA polymerase sigma 37.1 48 0.001 23.5 3.3 25 49-73 132-156 (173)
95 PRK06704 RNA polymerase factor 35.1 30 0.00065 27.0 2.1 40 48-87 129-168 (228)
96 cd06170 LuxR_C_like C-terminal 35.0 38 0.00083 19.1 2.1 30 49-82 13-42 (57)
97 PF14893 PNMA: PNMA 35.0 37 0.0008 28.4 2.7 44 51-97 14-57 (331)
98 PF01710 HTH_Tnp_IS630: Transp 33.8 30 0.00064 24.1 1.7 55 49-112 16-72 (119)
99 COG3355 Predicted transcriptio 33.4 28 0.0006 25.4 1.6 55 49-107 40-105 (126)
100 PRK12542 RNA polymerase sigma 33.4 55 0.0012 23.6 3.2 34 48-81 135-168 (185)
101 cd07321 Extradiol_Dioxygenase_ 33.2 53 0.0011 21.6 2.7 14 84-97 53-66 (77)
102 PF04512 Baculo_PEP_N: Baculov 32.8 33 0.00072 23.9 1.8 31 52-83 17-47 (97)
103 TIGR02954 Sig70_famx3 RNA poly 32.3 58 0.0013 23.0 3.1 32 48-79 132-163 (169)
104 CHL00008 petG cytochrome b6/f 31.4 1.1E+02 0.0025 17.9 3.6 30 1-30 1-31 (37)
105 PRK00665 petG cytochrome b6-f 30.9 1.1E+02 0.0025 17.8 3.5 30 1-30 1-31 (37)
106 PRK09642 RNA polymerase sigma 30.7 42 0.00092 23.4 2.1 21 48-68 119-139 (160)
107 smart00422 HTH_MERR helix_turn 30.6 31 0.00067 20.9 1.3 15 52-66 1-15 (70)
108 PRK12525 RNA polymerase sigma 30.4 48 0.001 23.6 2.4 34 48-81 131-164 (168)
109 PRK12518 RNA polymerase sigma 29.5 71 0.0015 22.5 3.2 24 49-72 134-157 (175)
110 KOG0431 Auxilin-like protein a 29.2 69 0.0015 27.8 3.5 33 67-99 400-441 (453)
111 TIGR02947 SigH_actino RNA poly 29.2 72 0.0016 23.2 3.2 32 48-79 144-175 (193)
112 PF02529 PetG: Cytochrome B6-F 28.9 1.3E+02 0.0028 17.7 4.3 29 1-29 1-30 (37)
113 TIGR02983 SigE-fam_strep RNA p 28.6 64 0.0014 22.5 2.7 34 48-81 123-156 (162)
114 PRK12523 RNA polymerase sigma 27.9 49 0.0011 23.6 2.1 33 48-80 132-164 (172)
115 PF04967 HTH_10: HTH DNA bindi 27.6 50 0.0011 20.4 1.8 32 50-81 22-53 (53)
116 COG2452 Predicted site-specifi 27.5 40 0.00088 26.4 1.6 15 52-66 2-16 (193)
117 PRK12530 RNA polymerase sigma 27.4 60 0.0013 23.7 2.5 33 48-80 147-179 (189)
118 PF06760 DUF1221: Protein of u 27.4 69 0.0015 25.4 2.9 42 55-98 101-155 (217)
119 TIGR02999 Sig-70_X6 RNA polyme 27.4 51 0.0011 23.5 2.1 25 49-73 148-172 (183)
120 PF00690 Cation_ATPase_N: Cati 27.3 1.3E+02 0.0028 18.5 3.7 33 50-83 2-36 (69)
121 PF11157 DUF2937: Protein of u 27.3 2.7E+02 0.0058 20.8 7.8 109 1-110 1-126 (167)
122 PF10975 DUF2802: Protein of u 26.8 99 0.0022 20.0 3.2 14 50-63 54-67 (70)
123 PF05853 DUF849: Prokaryotic p 26.7 71 0.0015 25.5 3.0 15 49-63 258-272 (272)
124 PF13384 HTH_23: Homeodomain-l 26.3 26 0.00055 20.1 0.3 27 50-77 16-42 (50)
125 PRK09647 RNA polymerase sigma 26.2 37 0.0008 25.5 1.2 19 49-67 152-170 (203)
126 PRK09047 RNA polymerase factor 25.7 53 0.0012 22.8 1.9 20 48-67 119-138 (161)
127 PRK12526 RNA polymerase sigma 25.5 78 0.0017 23.5 2.9 33 48-80 166-198 (206)
128 PRK12528 RNA polymerase sigma 25.3 59 0.0013 22.8 2.1 32 48-79 126-157 (161)
129 PRK09652 RNA polymerase sigma 25.1 60 0.0013 22.6 2.1 20 48-67 141-160 (182)
130 PRK09415 RNA polymerase factor 24.8 61 0.0013 23.3 2.1 27 48-74 140-166 (179)
131 PRK00118 putative DNA-binding 24.7 76 0.0016 22.2 2.5 34 47-80 29-62 (104)
132 PRK09649 RNA polymerase sigma 24.6 80 0.0017 23.0 2.7 34 48-81 143-176 (185)
133 PRK12522 RNA polymerase sigma 24.6 93 0.002 22.1 3.0 26 48-73 132-157 (173)
134 PRK09644 RNA polymerase sigma 24.1 74 0.0016 22.4 2.4 19 49-67 122-140 (165)
135 PRK04217 hypothetical protein; 23.9 79 0.0017 22.3 2.5 32 48-79 55-86 (110)
136 PF11469 Ribonucleas_3_2: Ribo 23.6 1.2E+02 0.0027 21.9 3.4 37 47-83 70-113 (120)
137 PRK06986 fliA flagellar biosyn 22.9 71 0.0015 24.2 2.3 33 47-79 196-228 (236)
138 PRK12537 RNA polymerase sigma 22.6 99 0.0021 22.2 2.9 32 48-79 146-177 (182)
139 PF14019 DUF4235: Protein of u 22.4 2.1E+02 0.0045 18.7 4.1 27 4-30 3-29 (78)
140 PRK12520 RNA polymerase sigma 22.4 86 0.0019 22.7 2.5 32 48-79 144-175 (191)
141 cd07923 Gallate_dioxygenase_C 22.4 1.2E+02 0.0026 21.1 3.1 35 49-97 34-68 (94)
142 PF13955 Fst_toxin: Toxin Fst, 22.1 85 0.0018 16.2 1.7 12 2-13 5-16 (21)
143 COG4354 Predicted bile acid be 22.1 1.1E+02 0.0023 28.3 3.5 33 51-83 585-617 (721)
144 PF00017 SH2: SH2 domain; Int 22.0 40 0.00088 20.9 0.6 16 48-63 2-17 (77)
145 PF04539 Sigma70_r3: Sigma-70 21.8 1.1E+02 0.0024 19.0 2.6 21 91-111 2-22 (78)
146 PRK09637 RNA polymerase sigma 21.8 1E+02 0.0023 22.4 2.9 20 48-67 119-138 (181)
147 PRK12547 RNA polymerase sigma 21.7 1.1E+02 0.0024 21.6 2.9 30 49-78 126-155 (164)
148 PF13518 HTH_28: Helix-turn-he 21.2 1.2E+02 0.0027 17.0 2.6 28 50-78 11-38 (52)
149 TIGR02952 Sig70_famx2 RNA poly 21.1 83 0.0018 21.9 2.2 25 48-72 135-159 (170)
150 PRK00523 hypothetical protein; 21.0 77 0.0017 21.1 1.8 20 96-115 24-43 (72)
151 PF13411 MerR_1: MerR HTH fami 21.0 36 0.00078 20.7 0.2 27 52-83 1-27 (69)
152 PRK12534 RNA polymerase sigma 20.8 1.2E+02 0.0026 21.7 3.0 22 48-69 150-171 (187)
153 PRK09643 RNA polymerase sigma 20.5 1.4E+02 0.003 21.8 3.3 18 49-66 148-165 (192)
154 PF05344 DUF746: Domain of Unk 20.4 1.3E+02 0.0028 19.7 2.7 39 49-88 11-49 (65)
155 PRK12514 RNA polymerase sigma 20.3 1.1E+02 0.0024 21.7 2.8 20 48-67 142-161 (179)
156 PF04355 SmpA_OmlA: SmpA / Oml 20.1 72 0.0016 19.8 1.5 19 47-65 11-29 (71)
157 PRK09646 RNA polymerase sigma 20.0 1.4E+02 0.003 21.7 3.2 32 48-79 155-186 (194)
No 1
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=100.00 E-value=3.1e-38 Score=229.19 Aligned_cols=111 Identities=52% Similarity=0.654 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCch-HHH--HhhhhhhcCCCCHHHHHHhhCCCCCCCHHHHHHHHH
Q 033572 1 MAARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVA-QET--VQNIRRASKMMAEPEARQILGVTEQSSWEEILKKYD 77 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~~gRA~~~Ayrq~~~~~~~~g~~-~~~--~~~~~~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~ 77 (116)
|++|+|+||+|+|++++||||++||||++.++.....+ ... .....+...+||++||++||||++..++|+|.++|+
T Consensus 1 Ma~riiaqiiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 1 MAKRIIAQIIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYK 80 (127)
T ss_dssp --------------------------------------------------------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence 99999999999999999999999999998543221111 110 011122345899999999999999999999999999
Q ss_pred HHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 033572 78 NLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKHQ 111 (116)
Q Consensus 78 ~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~~ 111 (116)
|||++| ++||||||||||++|||||++|++....
T Consensus 81 ~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~~~~~ 116 (127)
T PF03656_consen 81 HLFKANDPSKGGSFYLQSKVFRAKERLEQELKEEEK 116 (127)
T ss_dssp HHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 6899999999999999999999976643
No 2
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.5e-34 Score=207.95 Aligned_cols=106 Identities=46% Similarity=0.650 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhh-----hhhhcCCCCHHHHHHhhCCCCCCCHHHHHHHH
Q 033572 2 AARIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQN-----IRRASKMMAEPEARQILGVTEQSSWEEILKKY 76 (116)
Q Consensus 2 ~~r~i~~l~v~~~~~~gRA~~~Ayrq~~~~~~~~g~~~~~~~~-----~~~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~ 76 (116)
++|.+++|||+|++++||||++||||+++++...+...+..++ ..+...+||++||++||||++..++++|.++|
T Consensus 1 ~~R~~aqiIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~y 80 (132)
T KOG3442|consen 1 MARYLAQIIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRY 80 (132)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHH
Confidence 4799999999999999999999999999876443221111111 11224569999999999999999999999999
Q ss_pred HHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHh
Q 033572 77 DNLFEQN--AKNGSFYLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 77 ~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~ 107 (116)
.|||.+| .+||||||||||+||||||+.|++
T Consensus 81 ehLFevNdkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 81 EHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence 9999999 679999999999999999999998
No 3
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=188.35 Aligned_cols=102 Identities=28% Similarity=0.246 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcccCchHHHHhhhhhhcCCCCHHHHHHhhCCCCCCCHHHHHHHH
Q 033572 1 MAARIIAQLIVMGSGIMARAVVQ----AYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQSSWEEILKKY 76 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~~gRA~~~----Ayrq~~~~~~~~g~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~ 76 (116)
|+.++++|++|+++++.||..++ +++-... ....+..+.|+ .|+|.++||+.||.+||||.+++++++|+++|
T Consensus 1 ~~~~i~~G~gvaa~a~ag~~gl~~~~~~~qa~~~-~~~~~~~~~~y--~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaH 77 (112)
T KOG0723|consen 1 MVSPIIAGLGVAALAFAGRYGLWMKTLAKQAFKT-LPKGPFFGAFY--KGGFEPKMSRREAALILGVTPSLDKDKIKEAH 77 (112)
T ss_pred CchhHHHhHHHHHHHHhchhhhhchhHHHHHHHH-cCCCcchhhhh--hcccccccchHHHHHHhCCCccccHHHHHHHH
Confidence 78999999999999999999999 4433322 22233345566 89999999999999999999999999999999
Q ss_pred HHHHHHh--cCCCCHHHHHHHHHHHHHHHHH
Q 033572 77 DNLFEQN--AKNGSFYLQSKVHRAKECLETV 105 (116)
Q Consensus 77 ~~L~~~N--dkgGS~YL~sKin~Ak~~L~~e 105 (116)
||+|..| |+|||||||+|||||||+|+..
T Consensus 78 rriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 78 RRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999 9999999999999999999864
No 4
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.89 E-value=1.1e-22 Score=145.80 Aligned_cols=102 Identities=26% Similarity=0.314 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Cc---hHHHH--hhhhhhcCCCCHHHHHHhhCCCCCCCH
Q 033572 1 MAARIIAQLIVMGSGIMARAVVQAYRQALANASKS------GV---AQETV--QNIRRASKMMAEPEARQILGVTEQSSW 69 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~~gRA~~~Ayrq~~~~~~~~------g~---~~~~~--~~~~~~~~~Ms~~EA~~ILgv~~~~~~ 69 (116)
|.+|+++ +.+.++.+++|.++++|++.......+ +. ...++ .+.++|++.||.+||++||||+++++.
T Consensus 1 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~ 79 (116)
T PTZ00100 1 MMWPIVA-LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASK 79 (116)
T ss_pred CcchHHH-HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCH
Confidence 8899999 999999999999999999876543211 10 11221 225789999999999999999999999
Q ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHH
Q 033572 70 EEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLE 103 (116)
Q Consensus 70 ~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~ 103 (116)
++|+++||+|+..| |+|||+|+++|||+|+|+|.
T Consensus 80 ~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 80 ERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999996
No 5
>PHA03102 Small T antigen; Reviewed
Probab=98.72 E-value=5.5e-08 Score=72.79 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=52.4
Q ss_pred HHHHHHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572 54 EPEARQILGVTEQS--SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 54 ~~EA~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~ 109 (116)
.+|++.||||++++ |.++|+++|+++...+ |+||++..-.+||+|.++|.......
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~ 63 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSL 63 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhc
Confidence 58999999999999 9999999999999999 99999999999999999998877655
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.37 E-value=2.3e-06 Score=53.53 Aligned_cols=53 Identities=30% Similarity=0.343 Sum_probs=46.4
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cC-CCCH----HHHHHHHHHHHHHHHHHhh
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AK-NGSF----YLQSKVHRAKECLETVYQK 108 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dk-gGS~----YL~sKin~Ak~~L~~el~~ 108 (116)
+...||||+++++.++|+++|+++++.. |+ +++. -...+|++|+++|......
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 3578999999999999999999999999 77 6777 7889999999999876543
No 7
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.27 E-value=3.2e-06 Score=51.90 Aligned_cols=49 Identities=31% Similarity=0.340 Sum_probs=42.5
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-----CHHHHHHHHHHHHHHHH
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-----SFYLQSKVHRAKECLET 104 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-----S~YL~sKin~Ak~~L~~ 104 (116)
+...||||+++++.++|+++|++|.... |+++ +.-.-.+|++|+++|..
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999 8887 45667789999998864
No 8
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.26 E-value=4e-06 Score=67.09 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cC----CCCH-H------HHHHHHHHHHHHHHHH
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AK----NGSF-Y------LQSKVHRAKECLETVY 106 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dk----gGS~-Y------L~sKin~Ak~~L~~el 106 (116)
.|+.++|+.||||+++++.++|+++||+|+..+ |+ |.++ + --.+|++|+|+|.++-
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~r 264 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQK 264 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999999999999999 76 3443 2 3456999999998753
No 9
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.22 E-value=5.2e-06 Score=50.02 Aligned_cols=47 Identities=34% Similarity=0.293 Sum_probs=40.9
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS----FYLQSKVHRAKECLE 103 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS----~YL~sKin~Ak~~L~ 103 (116)
..+||||+++++.++|+++|++|++.. |++++ .-.-.+|++|+++|.
T Consensus 2 ~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 2 YYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999 88774 556678999999874
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=97.94 E-value=2.5e-05 Score=66.24 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=50.3
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHh
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~ 107 (116)
..|.......||||+++++.++|+++||+|-... |+++++---.+|++|+++|....+
T Consensus 23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~k 82 (421)
T PTZ00037 23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEK 82 (421)
T ss_pred ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHH
Confidence 4566778999999999999999999999998888 999887777789999999965543
No 11
>PHA02624 large T antigen; Provisional
Probab=97.78 E-value=7.6e-05 Score=66.52 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 033572 54 EPEARQILGVTEQS--SWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKH 110 (116)
Q Consensus 54 ~~EA~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~ 110 (116)
.+|+.+||||++++ +.++|+++||++-+.. |+||++-.-.+||+|+++|....++..
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r 70 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSAR 70 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhh
Confidence 46899999999999 9999999999998888 999999999999999999988776543
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=97.71 E-value=7.1e-05 Score=60.21 Aligned_cols=55 Identities=27% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHH---HHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQ---SKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~---sKin~Ak~~L~~el 106 (116)
|+...-..||||+++++.++|+++||+|.... |++.++.-. ..||+|+++|....
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~ 60 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE 60 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHH
Confidence 44456789999999999999999999999888 887655443 34999999996543
No 13
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0002 Score=56.81 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=45.0
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cC----CCCHHHHHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AK----NGSFYLQSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dk----gGS~YL~sKin~Ak~~L~~el 106 (116)
=.+||||+++++..||+++||+|-..- || +|+.+-...|+-|...|..+.
T Consensus 101 PyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~ 156 (230)
T KOG0721|consen 101 PYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKK 156 (230)
T ss_pred cHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchh
Confidence 368999999999999999999998776 88 899999999999999996554
No 14
>PRK14296 chaperone protein DnaJ; Provisional
Probab=97.48 E-value=0.00018 Score=59.85 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHH---HHHHHHHHHHHHHHhh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQ---SKVHRAKECLETVYQK 108 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~---sKin~Ak~~L~~el~~ 108 (116)
|+...-..||||+++++.++|+++||+|-... |++-++--. .+|++|+++|..+-+.
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHh
Confidence 44445689999999999999999999998777 776444322 3599999999765443
No 15
>PRK10767 chaperone protein DnaJ; Provisional
Probab=97.45 E-value=0.00027 Score=58.47 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=44.2
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHHHH---HHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFYLQ---SKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~YL~---sKin~Ak~~L~~el 106 (116)
|+......||||+++++.++|+++|++|-... |+++ ++--. ..|++|+++|....
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ 61 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchh
Confidence 44567889999999999999999999998888 8764 44322 36999999996544
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=97.44 E-value=0.00027 Score=58.93 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHHH---HHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQS---KVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~s---Kin~Ak~~L~~el 106 (116)
-..||||+++++.++|+++||+|-..- |+++++.-.. +|++|+|+|....
T Consensus 5 ~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~ 59 (378)
T PRK14278 5 YYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPE 59 (378)
T ss_pred cceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhh
Confidence 468999999999999999999998887 8888876544 4999999996543
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=97.40 E-value=0.0004 Score=58.25 Aligned_cols=52 Identities=27% Similarity=0.270 Sum_probs=43.1
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H---HHHHHHHHHHHHHHHHHh
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F---YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~---YL~sKin~Ak~~L~~el~ 107 (116)
.-..||||+++++.++|+++|++|-... |++.+ + -.-.+||+|+|+|....+
T Consensus 4 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 61 (397)
T PRK14281 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61 (397)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhh
Confidence 5679999999999999999999999888 87653 2 233689999999977553
No 18
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00033 Score=59.00 Aligned_cols=51 Identities=33% Similarity=0.410 Sum_probs=43.1
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHHH---HHHHHHHHHHHHh
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQSK---VHRAKECLETVYQ 107 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~sK---in~Ak~~L~~el~ 107 (116)
=.+||||+.+++.+||+++||+|-..- |++ |++==..| |++|+|+|...-+
T Consensus 6 yYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eK 62 (371)
T COG0484 6 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEK 62 (371)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 378999999999999999999999888 765 57777766 9999999965443
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=97.38 E-value=0.00034 Score=58.24 Aligned_cols=56 Identities=27% Similarity=0.288 Sum_probs=44.6
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHHHHHHHHHHh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG---SFYLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG---S~YL~sKin~Ak~~L~~el~ 107 (116)
|.......||||+++++.++|+++|++|-... |+.- ..---.+|++|+++|....+
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQK 61 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhH
Confidence 34457789999999999999999999998888 7643 23444679999999976554
No 20
>PRK14288 chaperone protein DnaJ; Provisional
Probab=97.38 E-value=0.00043 Score=57.56 Aligned_cols=51 Identities=24% Similarity=0.181 Sum_probs=40.8
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHh
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQ 107 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~ 107 (116)
-..||||+++++.++|+++||+|-... |+.. ++- --..|++|+|+|..+-+
T Consensus 5 yY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~k 61 (369)
T PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKK 61 (369)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHH
Confidence 368999999999999999999998887 7753 443 23459999999976543
No 21
>PRK14300 chaperone protein DnaJ; Provisional
Probab=97.35 E-value=0.00041 Score=57.66 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=42.6
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHHHh
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETVYQ 107 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~el~ 107 (116)
.-.+||||+++++.++|+++|++|-+.. |+..++- .-..||+|+++|..+.+
T Consensus 4 ~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~ 60 (372)
T PRK14300 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60 (372)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhH
Confidence 4579999999999999999999998888 7654332 33689999999987553
No 22
>PRK14287 chaperone protein DnaJ; Provisional
Probab=97.34 E-value=0.00036 Score=58.05 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=43.5
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el 106 (116)
|.......||||+++++.++|+++||+|-... |++.++ =--.+||+|+|+|....
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~ 60 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQ 60 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHh
Confidence 33456789999999999999999999998888 876443 12347999999995543
No 23
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=97.32 E-value=0.00056 Score=55.35 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=44.4
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG---SFYLQSKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG---S~YL~sKin~Ak~~L~~el 106 (116)
|+...-+.||||+++++.++|+++|++|-... |++. +.=.-..|++|+++|....
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHH
Confidence 34456789999999999999999999998888 8764 3344458999999997644
No 24
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.28 E-value=0.0005 Score=57.33 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=43.0
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHHHHHh
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL---QSKVHRAKECLETVYQ 107 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL---~sKin~Ak~~L~~el~ 107 (116)
..-..||||+++++.++|+++||+|-+.. |++.++-- -..||+|+++|....+
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~k 62 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEK 62 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHh
Confidence 46789999999999999999999998888 77644322 2469999999976554
No 25
>PRK14294 chaperone protein DnaJ; Provisional
Probab=97.25 E-value=0.00059 Score=56.55 Aligned_cols=56 Identities=32% Similarity=0.321 Sum_probs=44.7
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQ 107 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~ 107 (116)
|+...-..||||+++++.++|+++||+|-..- |++. ++- .-..|++|+++|....+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~ 62 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKK 62 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHH
Confidence 44567789999999999999999999998887 7764 332 34569999999976543
No 26
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.25 E-value=0.00074 Score=55.91 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHH---HHHHHHHHHHHHHHh
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQ---SKVHRAKECLETVYQ 107 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~---sKin~Ak~~L~~el~ 107 (116)
-..||||+++++.++|+++|++|.... |++.++--. ..||+|+++|....+
T Consensus 4 ~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~ 59 (371)
T PRK14292 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEK 59 (371)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhh
Confidence 468999999999999999999999988 887665422 459999999976543
No 27
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.24 E-value=0.00069 Score=55.61 Aligned_cols=51 Identities=29% Similarity=0.344 Sum_probs=41.8
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHHHhh
Q 033572 58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETVYQK 108 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~el~~ 108 (116)
.+||||+++++.++|+++|++|.... |++.++- .-.+|++|+++|....+.
T Consensus 3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R 58 (354)
T TIGR02349 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKR 58 (354)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHH
Confidence 57999999999999999999999988 8875543 334699999999776543
No 28
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.23 E-value=0.00054 Score=57.01 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=45.0
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHhh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQK 108 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~~ 108 (116)
|+....+.||||+++++.++|+++||+|-..- |+.. ++. --.+|++|+++|....+.
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr 63 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhh
Confidence 34456789999999999999999999998887 8753 443 224799999999876543
No 29
>PRK14286 chaperone protein DnaJ; Provisional
Probab=97.22 E-value=0.0006 Score=56.75 Aligned_cols=55 Identities=29% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el 106 (116)
|+...-..||||+++++.++|+++||+|-... |+.. ++ =.-..|++|+++|...-
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 61 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPK 61 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHH
Confidence 44456789999999999999999999998888 7753 43 23457999999996543
No 30
>PRK14276 chaperone protein DnaJ; Provisional
Probab=97.18 E-value=0.00059 Score=56.87 Aligned_cols=54 Identities=28% Similarity=0.256 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHHh
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el~ 107 (116)
...-..||||+++++.++|+++|++|-... |+..++ =--..|++|+++|...-+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQK 61 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhh
Confidence 345689999999999999999999998887 765432 233579999999966443
No 31
>PRK14285 chaperone protein DnaJ; Provisional
Probab=97.16 E-value=0.00054 Score=56.89 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=42.2
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el 106 (116)
.....||||+++++.++|+++||+|...- |++. ++ ..-..|++|+++|..+-
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 60 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDN 60 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 35678999999999999999999998887 8864 33 33457999999997643
No 32
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.15 E-value=0.00075 Score=56.56 Aligned_cols=52 Identities=27% Similarity=0.220 Sum_probs=42.5
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el 106 (116)
..-..||||+++++.++|+++||+|.... |++. ++ =.-.+|++|+++|..+-
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~ 66 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPA 66 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchh
Confidence 56789999999999999999999998887 8754 43 33347999999996543
No 33
>PRK14282 chaperone protein DnaJ; Provisional
Probab=97.10 E-value=0.0009 Score=55.50 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=42.6
Q ss_pred CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-C-H---HHHHHHHHHHHHHHHHHh
Q 033572 53 AEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-S-F---YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S-~---YL~sKin~Ak~~L~~el~ 107 (116)
....-.+||||+++++.++|+++|++|-..- |+.. . + -.-..||+|+++|...-+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~k 63 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK 63 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhh
Confidence 3345688999999999999999999999887 7642 1 2 233569999999966543
No 34
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.09 E-value=0.00086 Score=55.82 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=43.3
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHHhh
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVYQK 108 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el~~ 108 (116)
..-..||||+++++.++|+++||+|-..- |+.. ++- .-..||+|+++|....+.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhh
Confidence 46689999999999999999999998887 7753 332 235699999999776543
No 35
>PRK14295 chaperone protein DnaJ; Provisional
Probab=97.02 E-value=0.0014 Score=54.95 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETV 105 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~e 105 (116)
..-..||||+++++.++|+++||+|-... |++. .+. .-..||+|+++|...
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 57799999999999999999999998888 7753 332 345799999999654
No 36
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.98 E-value=0.0015 Score=54.44 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=43.2
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHHhh
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVYQK 108 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el~~ 108 (116)
..-..||||+++++.++|+++|++|-... |++.+ .=-=.+|++|+++|....+.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHH
Confidence 45679999999999999999999998887 87533 23345799999999776543
No 37
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0022 Score=53.48 Aligned_cols=55 Identities=27% Similarity=0.286 Sum_probs=43.9
Q ss_pred CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHH---HHHHHHHHHHHHHh
Q 033572 53 AEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQS---KVHRAKECLETVYQ 107 (116)
Q Consensus 53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~s---Kin~Ak~~L~~el~ 107 (116)
+.+.=.+||||+.+++.++|+++||+|-..- ||+ ++|==+. |||.|+++|..+-+
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpek 74 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEK 74 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 3344578999999999999999999998887 765 6665554 69999999965443
No 38
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.86 E-value=0.0026 Score=53.11 Aligned_cols=52 Identities=27% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETVY 106 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~el 106 (116)
..-..||||+++++.++|+++||+|-... |+.. ++- --..||+|+|+|....
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 62 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ 62 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHH
Confidence 45689999999999999999999998887 7653 443 2347999999996544
No 39
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.80 E-value=0.0028 Score=52.79 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHH---HHHHHHHHHHHHHHHHh
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFY---LQSKVHRAKECLETVYQ 107 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~Y---L~sKin~Ak~~L~~el~ 107 (116)
......+|||+++++.++|+++|++|-..- |+. +++. .-.+|++|+++|..+.+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 63 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDK 63 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 456789999999999999999999998887 664 4543 23479999999976543
No 40
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.79 E-value=0.003 Score=52.67 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHHh
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el~ 107 (116)
-..||||+++++.++|+++||+|-..- |++.++ =.-..|++|+++|....+
T Consensus 5 ~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~k 60 (382)
T PRK14291 5 YYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEK 60 (382)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 468999999999999999999998887 876543 233579999999976543
No 41
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.71 E-value=0.0037 Score=51.83 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=41.2
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H----HHHHHHHHHHHHHHHHHhh
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F----YLQSKVHRAKECLETVYQK 108 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~----YL~sKin~Ak~~L~~el~~ 108 (116)
-..||||+++++.++|+++||+|-... |+... + =.-..|++|+++|..+.+.
T Consensus 5 ~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 5 YYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred hhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhh
Confidence 468999999999999999999998888 77532 2 1224699999999776544
No 42
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.65 E-value=0.0042 Score=51.63 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=42.0
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHHhh
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVYQK 108 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el~~ 108 (116)
.-..||||+++++.++|+++|++|-... |+..+ .=.-..|++|+++|..+.+.
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHH
Confidence 3478999999999999999999998886 66533 22335799999999876643
No 43
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.49 E-value=0.0063 Score=50.91 Aligned_cols=48 Identities=35% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CHH---HHHHHHHHHHHHHHH
Q 033572 58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SFY---LQSKVHRAKECLETV 105 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~Y---L~sKin~Ak~~L~~e 105 (116)
..||||+++++.++|+++||+|-..- |+.. ++. .-..|++|+++|...
T Consensus 4 y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 68999999999999999999998886 7653 333 335699999999654
No 44
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=96.36 E-value=0.0076 Score=55.34 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=42.1
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL---QSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL---~sKin~Ak~~L~~el 106 (116)
-+.||||+++++.++|+++||+|.+.. |+++++.- -.+|++|+++|....
T Consensus 4 YYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~ 58 (871)
T TIGR03835 4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPK 58 (871)
T ss_pred hhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHH
Confidence 478999999999999999999999999 88876543 346999999996543
No 45
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=96.27 E-value=0.015 Score=43.75 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHhhCCCCC--CCHHHHHHHHHHHHHHh--cC--CCCHH-------HHHHHHHHHHHHHHHH
Q 033572 58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AK--NGSFY-------LQSKVHRAKECLETVY 106 (116)
Q Consensus 58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dk--gGS~Y-------L~sKin~Ak~~L~~el 106 (116)
+.||||++. ++.++|+++|++|.... |+ +.++. ..+.||+|+++|..-+
T Consensus 4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~ 65 (171)
T PRK05014 4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPL 65 (171)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChh
Confidence 579999996 78899999999999999 76 34443 3367999999996543
No 46
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.043 Score=52.70 Aligned_cols=78 Identities=26% Similarity=0.329 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhcccCchHHHHhhhhhhcCCCCHHHHHHhhCCCCC----CCHHHHHHHHHHHHHHh--cCC--CCH
Q 033572 18 ARAVVQAYRQALANASKSGVAQETVQNIRRASKMMAEPEARQILGVTEQ----SSWEEILKKYDNLFEQN--AKN--GSF 89 (116)
Q Consensus 18 gRA~~~Ayrq~~~~~~~~g~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~----~~~~~I~~~~~~L~~~N--dkg--GS~ 89 (116)
.|..+.+|+++... + -..||.+||++||+++-+ .++++|+++|++|-..- ||+ |-
T Consensus 1260 L~~~L~~W~~Elek--K--------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGR- 1322 (2235)
T KOG1789|consen 1260 LRCCLATWYNELEK--K--------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGR- 1322 (2235)
T ss_pred HHHHHHHHHHHHhc--C--------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHH-
Confidence 45666677766532 1 246999999999999875 45589999999997766 654 22
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 033572 90 YLQSKVHRAKECLETVYQKKHQG 112 (116)
Q Consensus 90 YL~sKin~Ak~~L~~el~~~~~~ 112 (116)
-.-.|||.|+|+|..+..+.-.|
T Consensus 1323 emFe~VnKAYE~L~~~ta~~~~G 1345 (2235)
T KOG1789|consen 1323 EMFERVNKAYELLSSETANNSGG 1345 (2235)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC
Confidence 23358999999998776665443
No 47
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.011 Score=48.36 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-HHHHH---HHHHHHHHHHHHH
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-FYLQS---KVHRAKECLETVY 106 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~YL~s---Kin~Ak~~L~~el 106 (116)
...+..=..+||++++++.++|+++||+|++.- |+.|. |-..- -||+|..+|..-.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~ 88 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPT 88 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChh
Confidence 344666789999999999999999999999966 66554 54444 4999999996543
No 48
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.02 E-value=0.046 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=29.5
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
.|+.++|+.+||++++.+.+.|...|+....-+
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~~ 33 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVNDD 33 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHHcC
Confidence 499999999999999999999999999887743
No 49
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.013 Score=47.61 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=49.4
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cC---CCCHHHHHHHHHHHHHHHHHHhhh
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AK---NGSFYLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dk---gGS~YL~sKin~Ak~~L~~el~~~ 109 (116)
...|+.+.-.+||||+++++..||+.+|++|-+.- |. .+.-=.-.+|.+|+|+|..+.++.
T Consensus 37 s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 37 SRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred cccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 34566668999999999999999999999999987 43 255555667999999998776654
No 50
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.027 Score=40.45 Aligned_cols=52 Identities=31% Similarity=0.314 Sum_probs=42.6
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCH----HHHHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSF----YLQSKVHRAKECLETVY 106 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~----YL~sKin~Ak~~L~~el 106 (116)
..-..||||.++++.++|+++|+++-..- |++ +.+ -.-..|++|.++|....
T Consensus 6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~ 64 (237)
T COG2214 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64 (237)
T ss_pred hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHH
Confidence 44578999999999999999999999988 764 455 55667999999996543
No 51
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=95.89 E-value=0.027 Score=42.36 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=39.9
Q ss_pred HHhhCCCCC--CCHHHHHHHHHHHHHHh--cCCCCH-------HHHHHHHHHHHHHHHHH
Q 033572 58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AKNGSF-------YLQSKVHRAKECLETVY 106 (116)
Q Consensus 58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkgGS~-------YL~sKin~Ak~~L~~el 106 (116)
+.||||++. ++.++|+++|++|.... |+.-|. -..+.||+|+++|..-+
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~ 64 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL 64 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 579999997 78999999999999988 775443 23579999999997554
No 52
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.039 Score=46.17 Aligned_cols=47 Identities=34% Similarity=0.334 Sum_probs=37.9
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHHHHH
Q 033572 58 RQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-YLQSKVHRAKECLET 104 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-YL~sKin~Ak~~L~~ 104 (116)
..||||.++++.+||+++||+|-... ||+-.. -==..|.+|+|+|..
T Consensus 7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD 56 (337)
T ss_pred ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 46999999999999999999999998 877551 111348889999955
No 53
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=94.63 E-value=0.1 Score=39.54 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=39.5
Q ss_pred HHhhCCCCC--CCHHHHHHHHHHHHHHh--cCC--CCHH-------HHHHHHHHHHHHHHHHh
Q 033572 58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AKN--GSFY-------LQSKVHRAKECLETVYQ 107 (116)
Q Consensus 58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkg--GS~Y-------L~sKin~Ak~~L~~el~ 107 (116)
+.+||+++. ++.++|+++|++|-... |+- .|+. ..+.||+|+++|...+.
T Consensus 7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~ 69 (173)
T PRK00294 7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPR 69 (173)
T ss_pred hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 568999997 78899999999999999 653 3332 35789999999976554
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=94.33 E-value=0.13 Score=39.12 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCC--CCHHHHHHHHHHHHHHh--cCC--CCHH-------HHHHHHHHHHHHHHHHh
Q 033572 55 PEARQILGVTEQ--SSWEEILKKYDNLFEQN--AKN--GSFY-------LQSKVHRAKECLETVYQ 107 (116)
Q Consensus 55 ~EA~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkg--GS~Y-------L~sKin~Ak~~L~~el~ 107 (116)
..-+.||||++. ++..+|+++|++|-... |+- .|+- ..+.||.|+++|..-+.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~ 71 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLK 71 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 345789999996 68899999999999998 753 3332 23789999999966543
No 55
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=94.12 E-value=0.11 Score=49.02 Aligned_cols=53 Identities=25% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHHHHH
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL---QSKVHRAKECLETVY 106 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL---~sKin~Ak~~L~~el 106 (116)
...-..||||+++++..+|+++|++|-..- |+...+-- =.+|++|+++|...-
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~ 629 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDID 629 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHH
Confidence 356799999999999999999999997777 77644411 146999999995543
No 56
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.17 Score=44.55 Aligned_cols=55 Identities=25% Similarity=0.226 Sum_probs=45.0
Q ss_pred CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHH-------HHHHHHHHHHHHHHHh
Q 033572 53 AEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYL-------QSKVHRAKECLETVYQ 107 (116)
Q Consensus 53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL-------~sKin~Ak~~L~~el~ 107 (116)
...|=..+|||+++++.|+|+++||++-.+= ||--+|-. =.+|.+|+|+|...-+
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~k 70 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQK 70 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHH
Confidence 3447789999999999999999999998887 88777654 3579999999965443
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=0.28 Score=42.91 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=43.6
Q ss_pred hhhcCCCCHH----HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHH
Q 033572 46 RRASKMMAEP----EARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLE 103 (116)
Q Consensus 46 ~~~~~~Ms~~----EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~ 103 (116)
..|...|++. .|..+|||.++++.++|+++||++-.+- ||+-+|= -=.|+..|.|+|.
T Consensus 222 t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 222 TSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIG 288 (490)
T ss_pred hhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhc
Confidence 3445555554 4999999999999999999999997777 8886442 2346777777773
No 58
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.50 E-value=1 Score=37.05 Aligned_cols=49 Identities=31% Similarity=0.346 Sum_probs=38.3
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHHH---HHHHHHHHHH
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQSK---VHRAKECLET 104 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~sK---in~Ak~~L~~ 104 (116)
|=..||||+++++..+|+++|+..-..- ||+ |.|=-+.| +-+|+++|..
T Consensus 6 dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D 60 (296)
T KOG0691|consen 6 DYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSD 60 (296)
T ss_pred hHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 4468999999999999999999887555 654 88875554 6678888843
No 59
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=2.6 Score=34.54 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHH-HHHHHHhh
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKE-CLETVYQK 108 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~-~L~~el~~ 108 (116)
..|-..||||+++++.++|+++|..|-+.- |.|.. .---..|.+|.. +|...+.+
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998 55522 222235888876 44444433
No 60
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=1.2 Score=39.08 Aligned_cols=47 Identities=30% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H----HHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F----YLQSKVHRAKECLE 103 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~----YL~sKin~Ak~~L~ 103 (116)
=..||||+.+++.++|+++||+|-..= |+++- - =.-+-|+.|+++|.
T Consensus 10 ~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLS 63 (508)
T KOG0717|consen 10 YYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLS 63 (508)
T ss_pred HHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence 467999999999999999999998887 77432 1 12245889999993
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=87.36 E-value=1.2 Score=39.41 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=36.8
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHH-HHh-cCCC-------CHHH--HHHHHHHHHHHHHHHhhh
Q 033572 58 RQILGVTEQSSWEEILKKYDNLF-EQN-AKNG-------SFYL--QSKVHRAKECLETVYQKK 109 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~-~~N-dkgG-------S~YL--~sKin~Ak~~L~~el~~~ 109 (116)
..|||++.+++..+|+++||+|- +-| ||-- |.|= +--|+.|++.|..+...+
T Consensus 101 yEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re 163 (610)
T COG5407 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE 163 (610)
T ss_pred HHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 67999999999999999999984 444 6532 2221 123788888886665443
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.00 E-value=0.49 Score=40.84 Aligned_cols=55 Identities=27% Similarity=0.264 Sum_probs=39.2
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHH----HHHHHHHHHHH
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSK----VHRAKECLETV 105 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sK----in~Ak~~L~~e 105 (116)
.--++.=.+||||..++++.+|.++||+|-..= |+=-.. =-+.| |-.|||+|..+
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 344567789999999999999999999998775 321111 11222 77899999543
No 63
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=86.78 E-value=2.6 Score=32.60 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHhhhcC
Q 033572 64 TEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECL-ETVYQKKHQ 111 (116)
Q Consensus 64 ~~~~~~~~I~~~~~~L~~~NdkgGS~YL~sKin~Ak~~L-~~el~~~~~ 111 (116)
+++++-|||++++.++.... +|..--..+|..|+|.| .+.+..-++
T Consensus 1 S~~ASfeEIq~Arn~ll~~y--~gd~~~~~~IEaAYD~ILM~rL~~Rq~ 47 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY--AGDEKSREAIEAAYDAILMERLRQRQK 47 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46789999999999998886 68889999999999866 455544433
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=85.72 E-value=2.1 Score=32.47 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=39.8
Q ss_pred HHhhCCCCC--CCHHHHHHHHHHHHHHh--cC--CCC-------HHHHHHHHHHHHHHHHHH
Q 033572 58 RQILGVTEQ--SSWEEILKKYDNLFEQN--AK--NGS-------FYLQSKVHRAKECLETVY 106 (116)
Q Consensus 58 ~~ILgv~~~--~~~~~I~~~~~~L~~~N--dk--gGS-------~YL~sKin~Ak~~L~~el 106 (116)
+.+||+++. .+...+.++|+.|-..- |+ +.| --.++.||.|+..|..-+
T Consensus 5 F~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl 66 (173)
T PRK01773 5 FALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPI 66 (173)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChH
Confidence 578999997 89999999999999998 65 233 345789999999996544
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=81.72 E-value=3.6 Score=30.51 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHHh--cC--CCC-------HHHHHHHHHHHHHHHHHHh
Q 033572 67 SSWEEILKKYDNLFEQN--AK--NGS-------FYLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 67 ~~~~~I~~~~~~L~~~N--dk--gGS-------~YL~sKin~Ak~~L~~el~ 107 (116)
.+..+|+++|++|-... |+ +.| --..+.||+|+++|...+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~ 54 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLM 54 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhh
Confidence 57789999999999988 75 332 2456789999999976553
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.33 E-value=3.2 Score=33.28 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=25.5
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKN 86 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg 86 (116)
++.+|.|+|..+.++|+++||+|-.+- |++
T Consensus 55 pfeVLqIdpev~~edikkryRklSilVHPDKN 86 (250)
T KOG1150|consen 55 PFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN 86 (250)
T ss_pred hHHHHhcCCCCCHHHHHHHHHhhheeecCCCC
Confidence 567788899999999999999998776 554
No 67
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.76 E-value=2.2 Score=34.69 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC------CHHHHHHHHHHHHHH
Q 033572 56 EARQILGVTEQSSWEEILKKYDNLFEQN--AKNG------SFYLQSKVHRAKECL 102 (116)
Q Consensus 56 EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG------S~YL~sKin~Ak~~L 102 (116)
.-..||||..+++.++|+++|++|-..- |+.. +.-=-.+++-|+.+|
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iL 69 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQIL 69 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999998887 6542 111112356666676
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.89 E-value=12 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=29.2
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
+...+++.+||++...+.+.|+++|+.+|.-+
T Consensus 110 ~~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~ 141 (174)
T COG1076 110 LDREDALKVLGVEIKADQDAIKKAYRKLLSEQ 141 (174)
T ss_pred ccchhHHHHhcCchhhhHHHHHHHHHHHHHhc
Confidence 33479999999999999999999999999988
No 69
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.59 E-value=5.1 Score=30.13 Aligned_cols=49 Identities=31% Similarity=0.344 Sum_probs=36.2
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-HHHH----HHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-YLQS----KVHRAKECLE 103 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-YL~s----Kin~Ak~~L~ 103 (116)
.+...||||...++.++|.++|+++-..= |++-++ +.+. .|.+|.++|.
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls 58 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLS 58 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccC
Confidence 46789999999888889999999999888 776555 2222 2335666554
No 70
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=69.98 E-value=4.8 Score=35.30 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=31.0
Q ss_pred CCCHH-HHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CC
Q 033572 51 MMAEP-EARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GS 88 (116)
Q Consensus 51 ~Ms~~-EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS 88 (116)
+||.+ .=.+|||+...++.++|.++|+++=..+ |+. ||
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags 409 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS 409 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch
Confidence 44443 3468999999999999999999999999 654 77
No 71
>PF12728 HTH_17: Helix-turn-helix domain
Probab=69.53 E-value=2.9 Score=24.55 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=13.4
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
||.+||+++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 799999999999764
No 72
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=62.14 E-value=5.1 Score=22.41 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=13.5
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
||..|+..+||+++.
T Consensus 2 lt~~e~a~~lgis~~ 16 (49)
T TIGR01764 2 LTVEEAAEYLGVSKD 16 (49)
T ss_pred CCHHHHHHHHCCCHH
Confidence 799999999999875
No 73
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=60.85 E-value=15 Score=24.04 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 033572 68 SWEEILKKYDNLFEQN-AKNGSFYLQSKVHRAKECLETVYQKKH 110 (116)
Q Consensus 68 ~~~~I~~~~~~L~~~N-dkgGS~YL~sKin~Ak~~L~~el~~~~ 110 (116)
..+++-+.|+.-+... ..|-+||+ +-|.|-+.+.++++.+.
T Consensus 21 ~~D~aA~~HD~aY~~~lk~G~NPY~--~~n~AD~~f~~~l~~d~ 62 (64)
T PF08398_consen 21 PVDAAAREHDEAYDELLKHGDNPYL--HFNHADEEFIKELKDDS 62 (64)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCce--eccHhhHHHHHHHHhcc
Confidence 3478999999999888 99999999 78889888888887653
No 74
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=60.37 E-value=21 Score=24.47 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=37.3
Q ss_pred hHHHHhhhhhhcCCCCHHHHHHhhCCCCC-----CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 033572 38 AQETVQNIRRASKMMAEPEARQILGVTEQ-----SSWEEILKKYDNLFEQNAKNGSFYLQSKVHR 97 (116)
Q Consensus 38 ~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-----~~~~~I~~~~~~L~~~NdkgGS~YL~sKin~ 97 (116)
+.++....-.+.-++|..+|.+|+.+=.+ .+.++..+-.+.+ .+=-||..+.+||+
T Consensus 17 ~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei----a~iT~p~ta~~vn~ 77 (85)
T PF11116_consen 17 AKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI----AKITSPQTAKQVNE 77 (85)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH----HHhcCHHHHHHHHH
Confidence 45565444566778999999999998444 3444444333333 44468999999886
No 75
>PRK12544 RNA polymerase sigma factor; Provisional
Probab=59.60 E-value=21 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCC
Q 033572 90 YLQSKVHRAKECLETVYQKKHQGTED 115 (116)
Q Consensus 90 YL~sKin~Ak~~L~~el~~~~~~~~~ 115 (116)
-+-+++.+|+..|.+.++....||||
T Consensus 180 tV~~~l~RAr~~Lr~~l~~~~~~~~~ 205 (206)
T PRK12544 180 NLNVLLYRARLRLRECLENKWFLKED 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 46678999999999999999999987
No 76
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=58.82 E-value=18 Score=26.48 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCC
Q 033572 91 LQSKVHRAKECLETVYQKKHQGTED 115 (116)
Q Consensus 91 L~sKin~Ak~~L~~el~~~~~~~~~ 115 (116)
+-+++.+|+..|.+.+.+....+|.
T Consensus 169 Vk~~l~Rar~~Lr~~l~~~~~~~~~ 193 (195)
T PRK12532 169 YHTIMHRARESLRQCLQIKWFNQEN 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccC
Confidence 4566778888888888777766664
No 77
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=54.09 E-value=7.6 Score=22.83 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=16.5
Q ss_pred hhcCCCCHHHHHHhhCCCCCCCHHHHHH
Q 033572 47 RASKMMAEPEARQILGVTEQSSWEEILK 74 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~~~~~I~~ 74 (116)
.+..+||.+|...+||++++.-..-+..
T Consensus 22 ~~~~g~s~~eIa~~l~~s~~~v~~~l~r 49 (54)
T PF08281_consen 22 RYFQGMSYAEIAEILGISESTVKRRLRR 49 (54)
T ss_dssp HHTS---HHHHHHHCTS-HHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4578899999999999877543333333
No 78
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=53.34 E-value=8.9 Score=21.17 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=13.1
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
||..|+...|||++.
T Consensus 1 ~s~~e~a~~lgvs~~ 15 (49)
T cd04762 1 LTTKEAAELLGVSPS 15 (49)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999875
No 79
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=52.19 E-value=17 Score=26.23 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 033572 90 YLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 90 YL~sKin~Ak~~L~~el~~~ 109 (116)
.+-+++.+|+..|.+.+.+.
T Consensus 160 tV~~~l~Rar~~Lr~~l~~~ 179 (186)
T PRK05602 160 ALESLLARGRRALRAQLADL 179 (186)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666666544
No 80
>PRK12545 RNA polymerase sigma factor; Provisional
Probab=50.08 E-value=25 Score=26.11 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCC
Q 033572 91 LQSKVHRAKECLETVYQKKHQGTED 115 (116)
Q Consensus 91 L~sKin~Ak~~L~~el~~~~~~~~~ 115 (116)
+-+++.+|+..|.+.+.....-+||
T Consensus 172 Vk~~l~RAr~~Lr~~l~~~~~~~~~ 196 (201)
T PRK12545 172 CSVLLYRARTRLRTCLSEKGLTTED 196 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3455667777776666555444443
No 81
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=48.78 E-value=16 Score=30.38 Aligned_cols=52 Identities=29% Similarity=0.350 Sum_probs=39.6
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC---CCHHHHHHHHHHHHHHHHH
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN---GSFYLQSKVHRAKECLETV 105 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg---GS~YL~sKin~Ak~~L~~e 105 (116)
.+.-..+|||..++++.+|.++||.|-..- |+. -|--+--||-.|.++|..+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN 88 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch
Confidence 456778999999999999999999999887 543 2224556677788777543
No 82
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=48.03 E-value=14 Score=21.47 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=20.5
Q ss_pred hhcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 47 RASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
.|..+||..|.-..||++.. .|+..+++.+
T Consensus 16 ~y~~~~t~~eIa~~lg~s~~----~V~~~~~~al 45 (50)
T PF04545_consen 16 RYFEGLTLEEIAERLGISRS----TVRRILKRAL 45 (50)
T ss_dssp HHTST-SHHHHHHHHTSCHH----HHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCCcHH----HHHHHHHHHH
Confidence 45788999999999998764 4444444433
No 83
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=47.72 E-value=28 Score=24.13 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=27.8
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHh--c---------CCCCHHHHH
Q 033572 58 RQILGVTEQSSWEEILKKYDNLFEQN--A---------KNGSFYLQS 93 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--d---------kgGS~YL~s 93 (116)
...+++.++.+.+++.++.+..+... + .|||||=..
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a 76 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAA 76 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence 55667788888999999999888754 1 589999543
No 84
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.98 E-value=12 Score=21.14 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=13.2
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
||..|+..+|||++.
T Consensus 1 ~~~~e~a~~~gv~~~ 15 (49)
T cd04761 1 YTIGELAKLTGVSPS 15 (49)
T ss_pred CcHHHHHHHHCcCHH
Confidence 789999999999874
No 85
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=46.43 E-value=27 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=16.6
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEIL 73 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~ 73 (116)
-.++|.+|-+++|||+.+.++++-.
T Consensus 43 i~gks~eeir~~fgi~~d~t~eee~ 67 (78)
T PF01466_consen 43 IKGKSPEEIRKYFGIENDLTPEEEE 67 (78)
T ss_dssp HTTS-HHHHHHHHT---TSSHHHHH
T ss_pred hcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 3469999999999999998876543
No 86
>PF12669 P12: Virus attachment protein p12 family
Probab=45.31 E-value=22 Score=22.32 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=10.5
Q ss_pred HHHHHHHHHHH-H-HHHHHHHHHH
Q 033572 6 IAQLIVMGSGI-M-ARAVVQAYRQ 27 (116)
Q Consensus 6 i~~l~v~~~~~-~-gRA~~~Ayrq 27 (116)
|++++|++..+ + .|.+++..++
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKKK 26 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444443 2 3666555444
No 87
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=43.85 E-value=22 Score=19.99 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHhhCCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~ 67 (116)
..+||..|..++||++...
T Consensus 16 ~~g~s~~eia~~l~is~~t 34 (58)
T smart00421 16 AEGLTNKEIAERLGISEKT 34 (58)
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 4679999999999986643
No 88
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=42.47 E-value=27 Score=25.43 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=24.1
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHH--h-cCCC
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQ--N-AKNG 87 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~--N-dkgG 87 (116)
+..+||.+|-..+||++.+.-...+..+-++|-+. | ++||
T Consensus 144 ~~~g~s~~EIAe~lgis~~~V~~~l~Ra~~~Lr~~~~~~~~~~ 186 (189)
T PRK06811 144 YLLGEKIEEIAKKLGLTRSAIDNRLSRGRKKLQKNKLNISLGG 186 (189)
T ss_pred HHccCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHcccCcccCC
Confidence 45678888888888888765444444444443321 1 5665
No 89
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=40.29 E-value=60 Score=20.34 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=22.4
Q ss_pred CHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCC
Q 033572 53 AEPEARQILGVTEQSSWEEILKKYDNLFEQNAKN 86 (116)
Q Consensus 53 s~~EA~~ILgv~~~~~~~~I~~~~~~L~~~Ndkg 86 (116)
+.+=|.+.||-++..+.+++.+.-.+-.+.|..|
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHHHHHHSTTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcCC
Confidence 4567899999999999998888777777777544
No 90
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=39.13 E-value=27 Score=25.26 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=29.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQ 82 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~ 82 (116)
+..+||.+|...+||++++.-+..+..+.+++...
T Consensus 140 ~~~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~~~ 174 (178)
T PRK12529 140 TLDGMKQKDIAQALDIALPTVKKYIHQAYVTCLSL 174 (178)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999987777777777777654
No 91
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=38.71 E-value=68 Score=26.83 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=36.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLET 104 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~ 104 (116)
...++|.+|=-..+|+++ .++.|+|..- ..-+-.|+.-++++|+++|.+
T Consensus 233 le~plsl~~LA~~~~~S~--------R~leRlF~~~lG~sP~~yy~~lRL~~Ar~LL~~ 283 (328)
T COG4977 233 LEEPLSLEELADRAGLSR--------RQLERLFRAELGVSPARYYLRLRLERARRLLEQ 283 (328)
T ss_pred hcCCcCHHHHHHHhCCCH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666554 4567777776 666888999999999999975
No 92
>PRK12516 RNA polymerase sigma factor; Provisional
Probab=38.51 E-value=30 Score=25.46 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=18.7
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
+..+||..|...+||++++.-+..+..+-++|-
T Consensus 129 ~~~g~s~~EIA~~Lgis~~tVk~~l~Rar~~Lr 161 (187)
T PRK12516 129 GASGFAYEEAAEICGCAVGTIKSRVNRARQRLQ 161 (187)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345677777777777776544444444444443
No 93
>PRK12527 RNA polymerase sigma factor; Reviewed
Probab=38.44 E-value=33 Score=24.01 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=17.3
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
...||.+|....||++.++-...+..+.++|
T Consensus 119 ~~~~s~~eIA~~lgis~~tv~~~l~ra~~~L 149 (159)
T PRK12527 119 LEGLSHQQIAEHLGISRSLVEKHIVNAMKHC 149 (159)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4566666666666666654444444444433
No 94
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=37.14 E-value=48 Score=23.48 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=12.6
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEIL 73 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~ 73 (116)
..+||.+|...+||++.+.-+..+.
T Consensus 132 ~~g~s~~EIA~~lgis~~tV~~~l~ 156 (173)
T PRK09645 132 YRGWSTAQIAADLGIPEGTVKSRLH 156 (173)
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3455555555555555544333333
No 95
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=35.09 E-value=30 Score=27.01 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=28.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCC
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNG 87 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~NdkgG 87 (116)
+..+||.+|..++||++++.-+..+..+-++|-.....|+
T Consensus 129 ~~eg~S~~EIAe~LgiS~~tVksrL~Rark~Lr~~l~~~~ 168 (228)
T PRK06704 129 DVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSEEGI 168 (228)
T ss_pred HhhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567999999999999887666666666666655553333
No 96
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=35.02 E-value=38 Score=19.09 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQ 82 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~ 82 (116)
..+||..|..+.||+++. .|..+-+++...
T Consensus 13 ~~~~s~~eia~~l~~s~~----tv~~~~~~~~~~ 42 (57)
T cd06170 13 AEGKTNKEIADILGISEK----TVKTHLRNIMRK 42 (57)
T ss_pred HcCCCHHHHHHHHCCCHH----HHHHHHHHHHHH
Confidence 467999999999998654 455554454443
No 97
>PF14893 PNMA: PNMA
Probab=34.96 E-value=37 Score=28.43 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHR 97 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~NdkgGS~YL~sKin~ 97 (116)
.++..-|++|+||+++++.++|.+.-+--+.-- |.+-+..|+++
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~pl---g~yrvl~~~f~ 57 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPL---GRYRVLGKMFR 57 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhccc---ccceehhhHhh
Confidence 577788999999999999999999876544322 55555555554
No 98
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.80 E-value=30 Score=24.09 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=30.7
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKHQG 112 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~~~ 112 (116)
..++|..||...++|+...- ....++++ .=..+ ++|+. ||+ .|.|.+.+++.+-.
T Consensus 16 ~~g~s~~eaa~~F~VS~~Tv-~~W~k~~~-~G~~~~k~r~~~-----Kid--~~~L~~~v~~~pd~ 72 (119)
T PF01710_consen 16 EKGKSIREAAKRFGVSRNTV-YRWLKRKE-TGDLEPKPRGRK-----KID--RDELKALVEENPDA 72 (119)
T ss_pred HccchHHHHHHHhCcHHHHH-HHHHHhcc-cccccccccccc-----ccc--HHHHHHHHHHCCCc
Confidence 45689999999999876532 22222222 22223 44444 775 35566666655433
No 99
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=33.44 E-value=28 Score=25.41 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=38.2
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh---------cCCCCHHHHHHHH--HHHHHHHHHHh
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN---------AKNGSFYLQSKVH--RAKECLETVYQ 107 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N---------dkgGS~YL~sKin--~Ak~~L~~el~ 107 (116)
+.++|.+|=..+||.+. .-|.++-++|+... +.||=-||=..|. +.|+.+.+.+.
T Consensus 40 ~~~~tvdelae~lnr~r----Stv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~ 105 (126)
T COG3355 40 NGPLTVDELAEILNRSR----STVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKILKDLD 105 (126)
T ss_pred cCCcCHHHHHHHHCccH----HHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHHHHHHH
Confidence 67899999999999865 45888889999887 3566666654443 33344544443
No 100
>PRK12542 RNA polymerase sigma factor; Provisional
Probab=33.38 E-value=55 Score=23.60 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=20.6
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
+..+||.+|...+||++++.-+..+..+-++|-.
T Consensus 135 ~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~ 168 (185)
T PRK12542 135 VFYNLTYQEISSVMGITEANVRKQFERARKRVQN 168 (185)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3456777777777777776544444444444433
No 101
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=33.18 E-value=53 Score=21.58 Aligned_cols=14 Identities=7% Similarity=-0.223 Sum_probs=11.6
Q ss_pred cCCCCHHHHHHHHH
Q 033572 84 AKNGSFYLQSKVHR 97 (116)
Q Consensus 84 dkgGS~YL~sKin~ 97 (116)
+-||+||+..|+-.
T Consensus 53 ~lG~~~~~l~k~~~ 66 (77)
T cd07321 53 VLGVNPMLLMHFAI 66 (77)
T ss_pred HcCCCHHHHHHHHH
Confidence 57999999999753
No 102
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=32.77 E-value=33 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=25.4
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
.+.+|-++||+++ ....+.|-.+|+++.+--
T Consensus 17 vgaDEil~IL~lp-~s~l~~iP~~~kk~w~dl 47 (97)
T PF04512_consen 17 VGADEILSILRLP-CSALQSIPRSHKKLWKDL 47 (97)
T ss_pred ecHHHHHHHhCCC-HHHHHHcCHHHHHHHHHh
Confidence 4679999999999 445678889999988765
No 103
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=32.32 E-value=58 Score=22.99 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=19.9
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||..|...+||++.+.-...+..+-++|
T Consensus 132 ~~~g~s~~eiA~~lgis~~tv~~~l~Ra~~~L 163 (169)
T TIGR02954 132 YYHDLTIKEIAEVMNKPEGTVKTYLHRALKKL 163 (169)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45678888888888887765444444443333
No 104
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=31.41 E-value=1.1e+02 Score=17.86 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 033572 1 MAARIIAQLIVMGSGI-MARAVVQAYRQALA 30 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~-~gRA~~~Ayrq~~~ 30 (116)
|+-|++.|+++-.--+ +.--|+.||.|+..
T Consensus 1 MvE~lL~GiVLGlipvTl~GlfvaAylQYrR 31 (37)
T CHL00008 1 MIEVLLFGIVLGLIPITLAGLFVTAYLQYRR 31 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHHhh
Confidence 6777777765322211 23457889999854
No 105
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=30.88 E-value=1.1e+02 Score=17.85 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 033572 1 MAARIIAQLIVMGSGI-MARAVVQAYRQALA 30 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~-~gRA~~~Ayrq~~~ 30 (116)
|+-|++.|++.-.--+ +.--|+.||.|+..
T Consensus 1 MvEplL~GiVLGlipiTl~GlfvaAylQYrR 31 (37)
T PRK00665 1 MIEPLLCGIVLGLIPVTLAGLFVAAWNQYKR 31 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 6777777765322211 23457889999854
No 106
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=30.70 E-value=42 Score=23.42 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=15.9
Q ss_pred hcCCCCHHHHHHhhCCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQSS 68 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~ 68 (116)
+..+||.+|...+||++++.-
T Consensus 119 ~~~g~s~~EIA~~lgis~~tV 139 (160)
T PRK09642 119 YLEEKSYQEIALQEKIEVKTV 139 (160)
T ss_pred HHhCCCHHHHHHHHCCCHHHH
Confidence 456788888888888887643
No 107
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=30.65 E-value=31 Score=20.89 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=12.9
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
||..|+.+++||++.
T Consensus 1 ~s~~eva~~~gvs~~ 15 (70)
T smart00422 1 YTIGEVAKLAGVSVR 15 (70)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999998864
No 108
>PRK12525 RNA polymerase sigma factor; Provisional
Probab=30.37 E-value=48 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=26.1
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
+..++|.+|...+||++.+.-...+..+.+++..
T Consensus 131 ~~eg~s~~EIA~~l~is~~tV~~~l~ra~~~~~~ 164 (168)
T PRK12525 131 QLEGLTYVEIGERLGVSLSRIHQYMVEAFKCCYQ 164 (168)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987666666666665543
No 109
>PRK12518 RNA polymerase sigma factor; Provisional
Probab=29.53 E-value=71 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=15.0
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEI 72 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I 72 (116)
..+||.+|..++||++++.-...+
T Consensus 134 ~~g~s~~eIA~~lg~s~~tv~~~l 157 (175)
T PRK12518 134 LEDLPQKEIAEILNIPVGTVKSRL 157 (175)
T ss_pred hcCCCHHHHHHHHCCCHHHHHHHH
Confidence 456777777777777765433333
No 110
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=29.16 E-value=69 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHHh--cC----CCC---HHHHHHHHHHH
Q 033572 67 SSWEEILKKYDNLFEQN--AK----NGS---FYLQSKVHRAK 99 (116)
Q Consensus 67 ~~~~~I~~~~~~L~~~N--dk----gGS---~YL~sKin~Ak 99 (116)
++.+.|+++|||--..- || |-| =||+.|||.+-
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l 441 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDAL 441 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHH
Confidence 68899999999988877 64 333 37888888653
No 111
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.
Probab=29.15 E-value=72 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=21.8
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||..|...+||++++.-+..+..+-++|
T Consensus 144 ~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~L 175 (193)
T TIGR02947 144 DVEGFAYKEIAEIMGTPIGTVMSRLHRGRKQL 175 (193)
T ss_pred hhcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45789999999999998875444444443333
No 112
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.88 E-value=1.3e+02 Score=17.66 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 033572 1 MAARIIAQLIVMGSGI-MARAVVQAYRQAL 29 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~-~gRA~~~Ayrq~~ 29 (116)
|+-|++.|+++--.-+ +.--|+.||.|+.
T Consensus 1 MvEplL~GiVlGli~vtl~Glfv~Ay~QY~ 30 (37)
T PF02529_consen 1 MVEPLLSGIVLGLIPVTLAGLFVAAYLQYR 30 (37)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchhhhhHHHHhHHHHHHHHHHHHHHHHh
Confidence 7788888876543322 3345788999974
No 113
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Probab=28.63 E-value=64 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=23.2
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
+..+||.+|...+||++.+.-+..+..+.++|-.
T Consensus 123 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 156 (162)
T TIGR02983 123 YYEDLSEAQVAEALGISVGTVKSRLSRALARLRE 156 (162)
T ss_pred HHhcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4677888888888888876655555555555443
No 114
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=27.88 E-value=49 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=24.8
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
+..+||..|...+||++.+.-+..+..+-++|-
T Consensus 132 ~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~~~ 164 (172)
T PRK12523 132 RLDGMGHAEIAERLGVSVSRVRQYLAQGLRQCY 164 (172)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999998766666666655553
No 115
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=27.65 E-value=50 Score=20.40 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
...|.+|=-..|||++..-.+-++++.+++++
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae~kli~ 53 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAERKLIE 53 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence 46899999999999998878889999998873
No 116
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=27.50 E-value=40 Score=26.40 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.0
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
|++.||+++|||+..
T Consensus 2 m~~~e~~~~lgis~~ 16 (193)
T COG2452 2 LRPKEACQLLGISYS 16 (193)
T ss_pred CCHHHHHHHhCcCHH
Confidence 788888888888754
No 117
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=27.43 E-value=60 Score=23.73 Aligned_cols=33 Identities=6% Similarity=-0.055 Sum_probs=22.9
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
+..+||.+|...+||++++.-+.-+..+-++|-
T Consensus 147 ~~~g~s~~EIA~~lgis~~tVk~~l~RAr~~Lr 179 (189)
T PRK12530 147 EYLELSSEQICQECDISTSNLHVLLYRARLQLQ 179 (189)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 356899999999999998765544444444443
No 118
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=27.42 E-value=69 Score=25.45 Aligned_cols=42 Identities=29% Similarity=0.289 Sum_probs=31.5
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-----------CCHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-----------GSFYLQSKVHRA 98 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-----------GS~YL~sKin~A 98 (116)
=||..+-|=-++.+++++.+ +|||..| |+. |-.||.++=.-+
T Consensus 101 iEAIE~AgE~sG~D~dE~~r--kRl~~a~kYdk~~~dpklFqw~fGKqYLvs~e~c~ 155 (217)
T PF06760_consen 101 IEAIETAGEISGSDQDEMAR--KRLVLARKYDKEWLDPKLFQWRFGKQYLVSRELCA 155 (217)
T ss_pred HHHHHHHhhccCCCHHHHHH--HHHHHHHhhhhhccchHHHHHHhhhhheeHHHHHH
Confidence 57777777556688899986 8899888 543 889998874433
No 119
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found in a variety of species including Rhodopirellula baltica which encodes a paralogous group of five.
Probab=27.35 E-value=51 Score=23.51 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=14.6
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEIL 73 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~ 73 (116)
..+||.+|...+||++.+.-+..+.
T Consensus 148 ~~g~s~~EIA~~lgis~~tVk~~l~ 172 (183)
T TIGR02999 148 FAGLTVEEIAELLGVSVRTVERDWR 172 (183)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4567777777777766654333333
No 120
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=27.33 E-value=1.3e+02 Score=18.50 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=24.7
Q ss_pred CCCCHHHHHHhhCCCC--CCCHHHHHHHHHHHHHHh
Q 033572 50 KMMAEPEARQILGVTE--QSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~--~~~~~~I~~~~~~L~~~N 83 (116)
+.|+.+|-++-|+.+. +.+.+++.++- +.+..|
T Consensus 2 ~~~~~~~v~~~l~t~~~~GLs~~ev~~r~-~~~G~N 36 (69)
T PF00690_consen 2 HQLSVEEVLKRLNTSSSQGLSSEEVEERR-KKYGPN 36 (69)
T ss_dssp TTSSHHHHHHHHTTBTSSBBTHHHHHHHH-HHHSSS
T ss_pred CCCCHHHHHHHHCcCCCCCCCHHHHHHHH-Hhcccc
Confidence 4689999999998544 48888887764 456777
No 121
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=27.30 E-value=2.7e+02 Score=20.84 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc--ccCchHHHHhhhhhhcCCCCHHHHHHhhCCCCC-------CC
Q 033572 1 MAARIIAQLIVMGSGIMA---RAVVQAYRQALANAS--KSGVAQETVQNIRRASKMMAEPEARQILGVTEQ-------SS 68 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~~g---RA~~~Ayrq~~~~~~--~~g~~~~~~~~~~~~~~~Ms~~EA~~ILgv~~~-------~~ 68 (116)
|..+++.-++.+.+.+++ =.|++-|.|-..-.- .......|-..... .-..|++++..=+.-+++ .+
T Consensus 1 Mi~r~l~l~~~~~g~l~~~Q~P~F~~qY~QrL~g~~~e~~~~v~~F~~~A~~-~f~~~~~~li~~~~~s~dp~~~~~a~~ 79 (167)
T PF11157_consen 1 MIRRYLRLAVFAAGALIGSQIPEFAQQYQQRLGGHLDELRRQVAGFQATAAR-YFGGDREALIAHYRQSSDPVFRARAES 79 (167)
T ss_pred CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCHHHHhhHHH
Confidence 777888777777777766 468888888553210 00001112110111 227899999999866665 24
Q ss_pred HHHHHHHHHHHHHHh-c-CCCCHHHHHHHH--HH-HHHHHHHHhhhc
Q 033572 69 WEEILKKYDNLFEQN-A-KNGSFYLQSKVH--RA-KECLETVYQKKH 110 (116)
Q Consensus 69 ~~~I~~~~~~L~~~N-d-kgGS~YL~sKin--~A-k~~L~~el~~~~ 110 (116)
.+.+.++|.+|=... . ..|+||-..=+. .+ .+++.+-|++..
T Consensus 80 ~~~~~~R~~~L~~~~~~l~~~~~~~r~~~~~~~~d~~i~~~t~~~f~ 126 (167)
T PF11157_consen 80 MQATIERYQRLSQQLQALAQASPFERAWYFLRPADPEIAQETWQNFS 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhcccHHHHHHHHHhCC
Confidence 455566666665555 2 478888543321 11 155555555543
No 122
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=26.83 E-value=99 Score=20.02 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=11.2
Q ss_pred CCCCHHHHHHhhCC
Q 033572 50 KMMAEPEARQILGV 63 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv 63 (116)
-.+|+.||.+++.+
T Consensus 54 CgL~~aEAeLl~~L 67 (70)
T PF10975_consen 54 CGLSRAEAELLLSL 67 (70)
T ss_pred cCCCHHHHHHHHHH
Confidence 46899999888765
No 123
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=26.70 E-value=71 Score=25.54 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=10.5
Q ss_pred cCCCCHHHHHHhhCC
Q 033572 49 SKMMAEPEARQILGV 63 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv 63 (116)
+..+|.+||+.|||+
T Consensus 258 revAt~~eaR~iLgl 272 (272)
T PF05853_consen 258 REVATPAEARAILGL 272 (272)
T ss_dssp -EB--HHHHHHHHT-
T ss_pred CCCCCHHHHHHHhCc
Confidence 678999999999996
No 124
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=26.33 E-value=26 Score=20.14 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYD 77 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~ 77 (116)
.++|..|..+.||++.. +...+.++|+
T Consensus 16 ~G~s~~~ia~~lgvs~~-Tv~~w~kr~~ 42 (50)
T PF13384_consen 16 EGWSIREIAKRLGVSRS-TVYRWIKRYR 42 (50)
T ss_dssp HT--HHHHHHHHTS-HH-HHHHHHT---
T ss_pred CCCCHHHHHHHHCcCHH-HHHHHHHHcc
Confidence 37999999999999874 3344555554
No 125
>PRK09647 RNA polymerase sigma factor SigE; Reviewed
Probab=26.17 E-value=37 Score=25.47 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=11.0
Q ss_pred cCCCCHHHHHHhhCCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~ 67 (116)
..++|.+|...+||+++..
T Consensus 152 ~~g~s~~EIA~~Lgis~~t 170 (203)
T PRK09647 152 IEGLSYEEIAATLGVKLGT 170 (203)
T ss_pred HcCCCHHHHHHHHCCCHHH
Confidence 4556666666666665543
No 126
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=25.68 E-value=53 Score=22.75 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=15.1
Q ss_pred hcCCCCHHHHHHhhCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~ 67 (116)
+..+||.+|...+||++.+.
T Consensus 119 ~~~g~s~~EIA~~lgis~~t 138 (161)
T PRK09047 119 YWEDMDVAETAAAMGCSEGS 138 (161)
T ss_pred HHhcCCHHHHHHHHCCCHHH
Confidence 45678888888888887654
No 127
>PRK12526 RNA polymerase sigma factor; Provisional
Probab=25.47 E-value=78 Score=23.48 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=19.3
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
+..+||.+|...+||++.+.-...+..+.++|.
T Consensus 166 ~~~g~s~~EIA~~lgis~~tV~~~l~Ra~~~Lr 198 (206)
T PRK12526 166 YFQELSQEQLAQQLNVPLGTVKSRLRLALAKLK 198 (206)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456777777777777776544344444444433
No 128
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=25.29 E-value=59 Score=22.76 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=24.4
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||.+|-..+||++.+.-...+..+-++|
T Consensus 126 ~~~g~s~~EIA~~l~is~~tV~~~l~ra~~~~ 157 (161)
T PRK12528 126 QVDGLGYGEIATELGISLATVKRYLNKAAMRC 157 (161)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46789999999999998876566666665554
No 129
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=25.13 E-value=60 Score=22.65 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=14.5
Q ss_pred hcCCCCHHHHHHhhCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~ 67 (116)
+..+||.+|..+.||++...
T Consensus 141 ~~~~~s~~eIA~~lgis~~t 160 (182)
T PRK09652 141 EIEGLSYEEIAEIMGCPIGT 160 (182)
T ss_pred HHcCCCHHHHHHHHCCCHHH
Confidence 35678888888888887653
No 130
>PRK09415 RNA polymerase factor sigma C; Reviewed
Probab=24.83 E-value=61 Score=23.34 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.3
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILK 74 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~ 74 (116)
+..+||.+|...+||++.+.-..-+..
T Consensus 140 ~~~g~s~~EIA~~l~is~~tv~~~l~R 166 (179)
T PRK09415 140 YYEELSIKEIAEVTGVNENTVKTRLKK 166 (179)
T ss_pred HhcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 356788888888888866543333333
No 131
>PRK00118 putative DNA-binding protein; Validated
Probab=24.71 E-value=76 Score=22.20 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=23.7
Q ss_pred hhcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 47 RASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
.+..+||..|..+++|+++..-..-+..+-++|-
T Consensus 29 ~y~eg~S~~EIAe~lGIS~~TV~r~L~RArkkLr 62 (104)
T PRK00118 29 YYLDDYSLGEIAEEFNVSRQAVYDNIKRTEKLLE 62 (104)
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999754444444333333
No 132
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=24.61 E-value=80 Score=22.95 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=18.9
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
+...||.+|...+||++++.-+.-+..+-++|-+
T Consensus 143 ~~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~ 176 (185)
T PRK09649 143 QLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 (185)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 3456777777777776665444444444444433
No 133
>PRK12522 RNA polymerase sigma factor; Provisional
Probab=24.58 E-value=93 Score=22.07 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=17.4
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEIL 73 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~ 73 (116)
+..+||.+|...+||++.+.-...+.
T Consensus 132 ~~~~~s~~EIA~~lgis~~tV~~~l~ 157 (173)
T PRK12522 132 YYEQYSYKEMSEILNIPIGTVKYRLN 157 (173)
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45678888888888888764333333
No 134
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=24.14 E-value=74 Score=22.42 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=12.0
Q ss_pred cCCCCHHHHHHhhCCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~ 67 (116)
..++|..|...+||++.+.
T Consensus 122 ~~g~s~~eIA~~lgis~~t 140 (165)
T PRK09644 122 VHELTYEEAASVLDLKLNT 140 (165)
T ss_pred HhcCCHHHHHHHHCCCHHH
Confidence 4566667777777766543
No 135
>PRK04217 hypothetical protein; Provisional
Probab=23.92 E-value=79 Score=22.33 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=19.5
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+...||.+|..++||++...-...+..+-+.|
T Consensus 55 ~~eGlS~~EIAk~LGIS~sTV~r~L~RArkkL 86 (110)
T PRK04217 55 DYEGLTQEEAGKRMGVSRGTVWRALTSARKKV 86 (110)
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34668888888888887764333344333333
No 136
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=23.63 E-value=1.2e+02 Score=21.88 Aligned_cols=37 Identities=27% Similarity=0.215 Sum_probs=25.3
Q ss_pred hhcCCCCHHHHHHhh--CCCCC-----CCHHHHHHHHHHHHHHh
Q 033572 47 RASKMMAEPEARQIL--GVTEQ-----SSWEEILKKYDNLFEQN 83 (116)
Q Consensus 47 ~~~~~Ms~~EA~~IL--gv~~~-----~~~~~I~~~~~~L~~~N 83 (116)
-+...||.+||-.|| |++++ -.++.|-+++-.|++.-
T Consensus 70 WLeg~it~eEaveil~~nl~~dv~~fsrkke~ig~Ala~Ll~~i 113 (120)
T PF11469_consen 70 WLEGKITIEEAVEILKANLTEDVLHFSRKKEAIGKALAELLKVI 113 (120)
T ss_dssp HHTTSS-HHHHHHHHHCT--GGGG-TTTHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHhcCchhhcchhHHHHHHHHHHHHHHHHH
Confidence 357789999999998 55555 23467888888887653
No 137
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated
Probab=22.91 E-value=71 Score=24.23 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=23.4
Q ss_pred hhcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 47 RASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
.+..+||.+|...+||++...-...+..+.++|
T Consensus 196 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 228 (236)
T PRK06986 196 YYQEELNLKEIGAVLGVSESRVSQIHSQAIKRL 228 (236)
T ss_pred HhccCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356789999999999998875455555554444
No 138
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=22.63 E-value=99 Score=22.23 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=22.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||.+|-..+||++.+.-..-+..+-++|
T Consensus 146 ~~~~~s~~eIA~~lgis~~tV~~~l~ra~~~L 177 (182)
T PRK12537 146 YVDGCSHAEIAQRLGAPLGTVKAWIKRSLKAL 177 (182)
T ss_pred HHcCCCHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 56788999999999988876554444444433
No 139
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=22.41 E-value=2.1e+02 Score=18.75 Aligned_cols=27 Identities=4% Similarity=0.020 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033572 4 RIIAQLIVMGSGIMARAVVQAYRQALA 30 (116)
Q Consensus 4 r~i~~l~v~~~~~~gRA~~~Ayrq~~~ 30 (116)
++-..+.+.++.+.+|.|-+.|+..-.
T Consensus 3 ~~~~~~~~~ag~~a~k~~~~~W~~~tg 29 (78)
T PF14019_consen 3 PVGLAAGLAAGFLAGKVFEQVWKKVTG 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345677889999999999999999754
No 140
>PRK12520 RNA polymerase sigma factor; Provisional
Probab=22.38 E-value=86 Score=22.69 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=19.7
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||.+|...+||++.+.-+..+..+-++|
T Consensus 144 ~~~g~s~~EIA~~lgis~~tV~~~l~Rar~~L 175 (191)
T PRK12520 144 EWLELETEEICQELQITATNAWVLLYRARMRL 175 (191)
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34578888888888887765444443333333
No 141
>cd07923 Gallate_dioxygenase_C The C-terminal domain of Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of the PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. This model represents the C-terminal domain, which is similar to the A subunit of PCA 4,5-dioxygenase (or LigAB). The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. Since enzymes in this subfamily have fused A and B subunits, the dimer interface may resemble the tetramer interface of classical LigAB enzymes. This enzyme belongs to the class III extradiol dioxygenase family, composed of enzymes whi
Probab=22.37 E-value=1.2e+02 Score=21.07 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGSFYLQSKVHR 97 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~NdkgGS~YL~sKin~ 97 (116)
..+||.+|-..|+.-+ +..|+ +-||++|+-.|+-.
T Consensus 34 e~gLt~Ee~~av~~rD-----------~~~li---~~G~n~y~L~K~a~ 68 (94)
T cd07923 34 EAGLTEEERTLIRNRD-----------WIGMI---RYGVIFFVLEKLAA 68 (94)
T ss_pred HcCCCHHHHHHHHcch-----------HHHHH---HccCcHHHHHHHHH
Confidence 3467777777765422 22222 57999999999753
No 142
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=22.15 E-value=85 Score=16.24 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHH
Q 033572 2 AARIIAQLIVMG 13 (116)
Q Consensus 2 ~~r~i~~l~v~~ 13 (116)
.+|+++|+++..
T Consensus 5 IaPi~VGvvl~l 16 (21)
T PF13955_consen 5 IAPIVVGVVLTL 16 (21)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 368888887653
No 143
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=22.15 E-value=1.1e+02 Score=28.29 Aligned_cols=33 Identities=12% Similarity=0.318 Sum_probs=29.0
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
+|.-+==..+||+++-++.+.|+.+.+..+++|
T Consensus 585 QL~Gqfy~~LLgLpdivdhd~~ksal~sIy~ln 617 (721)
T COG4354 585 QLCGQFYATLLGLPDIVDHDKIKSALESIYDLN 617 (721)
T ss_pred HHHhHHHHHHcCCCcccchHHHHHHHHHHHhhc
Confidence 455555678999999999999999999999999
No 144
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=22.01 E-value=40 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=12.4
Q ss_pred hcCCCCHHHHHHhhCC
Q 033572 48 ASKMMAEPEARQILGV 63 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv 63 (116)
|...||++||..+|-=
T Consensus 2 ~~g~isr~~Ae~~L~~ 17 (77)
T PF00017_consen 2 FHGFISRQEAERLLMQ 17 (77)
T ss_dssp BEESSHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHh
Confidence 3467899999998864
No 145
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=21.80 E-value=1.1e+02 Score=19.01 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 033572 91 LQSKVHRAKECLETVYQKKHQ 111 (116)
Q Consensus 91 L~sKin~Ak~~L~~el~~~~~ 111 (116)
...||.+|+..|.++++..++
T Consensus 2 ~l~~i~~a~~~L~~~lgr~Pt 22 (78)
T PF04539_consen 2 KLRKIERARRELEQELGREPT 22 (78)
T ss_dssp HHHHHHHHHHHHHHHHSS--B
T ss_pred hHHHHHHHHHHHHHHhCCCCC
Confidence 357899999999988876543
No 146
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=21.78 E-value=1e+02 Score=22.36 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=15.1
Q ss_pred hcCCCCHHHHHHhhCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~ 67 (116)
+..+|+.+|...+||++++.
T Consensus 119 ~~~g~~~~EIA~~lgis~~t 138 (181)
T PRK09637 119 ELEGLSQKEIAEKLGLSLSG 138 (181)
T ss_pred HhcCCCHHHHHHHhCCCHHH
Confidence 35678888888888888764
No 147
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=21.75 E-value=1.1e+02 Score=21.59 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=16.8
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDN 78 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~ 78 (116)
..+||.+|...+||++++.-+..+..+-++
T Consensus 126 ~~g~s~~eIA~~lgis~~tV~~~l~Rar~~ 155 (164)
T PRK12547 126 ASGFSYEDAAAICGCAVGTIKSRVSRARNR 155 (164)
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456777777777777665433333333333
No 148
>PF13518 HTH_28: Helix-turn-helix domain
Probab=21.24 E-value=1.2e+02 Score=16.99 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDN 78 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~ 78 (116)
.+.|..|+...+||+. .+.....++|+.
T Consensus 11 ~g~s~~~~a~~~gis~-~tv~~w~~~y~~ 38 (52)
T PF13518_consen 11 EGESVREIAREFGISR-STVYRWIKRYRE 38 (52)
T ss_pred cCCCHHHHHHHHCCCH-hHHHHHHHHHHh
Confidence 4569999999999955 555667777765
No 149
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=21.13 E-value=83 Score=21.91 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=18.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEI 72 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I 72 (116)
+..+||..|-..+||++++.-...+
T Consensus 135 ~~~g~s~~eIA~~l~is~~tv~~~l 159 (170)
T TIGR02952 135 FGQNLPIAEVARILGKTEGAVKILQ 159 (170)
T ss_pred HhcCCCHHHHHHHHCCCHHHHHHHH
Confidence 4578899999999998876433333
No 150
>PRK00523 hypothetical protein; Provisional
Probab=21.02 E-value=77 Score=21.15 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhcCCCCC
Q 033572 96 HRAKECLETVYQKKHQGTED 115 (116)
Q Consensus 96 n~Ak~~L~~el~~~~~~~~~ 115 (116)
+-|+..+++++++.+|.+||
T Consensus 24 fiark~~~k~l~~NPpine~ 43 (72)
T PRK00523 24 FVSKKMFKKQIRENPPITEN 43 (72)
T ss_pred HHHHHHHHHHHHHCcCCCHH
Confidence 34666778889999998886
No 151
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=20.95 E-value=36 Score=20.65 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=17.5
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
||..|+.+++||++. .-..|.+...+.
T Consensus 1 yti~eva~~~gvs~~-----tlr~y~~~gll~ 27 (69)
T PF13411_consen 1 YTIKEVAKLLGVSPS-----TLRYYEREGLLP 27 (69)
T ss_dssp EEHHHHHHHTTTTHH-----HHHHHHHTTSST
T ss_pred CcHHHHHHHHCcCHH-----HHHHHHHhcCcc
Confidence 678899999999653 233444444444
No 152
>PRK12534 RNA polymerase sigma factor; Provisional
Probab=20.75 E-value=1.2e+02 Score=21.69 Aligned_cols=22 Identities=5% Similarity=-0.241 Sum_probs=15.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCH
Q 033572 48 ASKMMAEPEARQILGVTEQSSW 69 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~ 69 (116)
+..+||.+|-..+||++++.-.
T Consensus 150 ~~~g~s~~eIA~~lgis~~~v~ 171 (187)
T PRK12534 150 FFEGITYEELAARTDTPIGTVK 171 (187)
T ss_pred HHcCCCHHHHHHHhCCChhHHH
Confidence 4567777777777777775433
No 153
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=20.54 E-value=1.4e+02 Score=21.84 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=9.4
Q ss_pred cCCCCHHHHHHhhCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~ 66 (116)
..++|.+|-..+||++.+
T Consensus 148 ~~g~s~~EIA~~lg~s~~ 165 (192)
T PRK09643 148 MQGYSVADAARMLGVAEG 165 (192)
T ss_pred HcCCCHHHHHHHHCcCHH
Confidence 344555555555555544
No 154
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=20.38 E-value=1.3e+02 Score=19.66 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=26.5
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCCC
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQNAKNGS 88 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~NdkgGS 88 (116)
...+|..||-..||+++..-.+=| ..||+-...-|..|+
T Consensus 11 s~~~s~~~Aa~~lG~~~~~v~~wv-~~fR~wll~LDPSG~ 49 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGTVRRWV-RMFRQWLLQLDPSGH 49 (65)
T ss_pred cccccHHHHHHHHCcCHHHHHHHH-HHHHHHHHHcCCCCC
Confidence 568999999999999986544433 345555555555554
No 155
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=20.31 E-value=1.1e+02 Score=21.70 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=13.3
Q ss_pred hcCCCCHHHHHHhhCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~ 67 (116)
+..+||.+|-.++||++...
T Consensus 142 ~~~g~s~~eIA~~lgis~~t 161 (179)
T PRK12514 142 YLEGLSYKELAERHDVPLNT 161 (179)
T ss_pred HHcCCCHHHHHHHHCCChHH
Confidence 34567777777777776654
No 156
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=20.08 E-value=72 Score=19.79 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=14.5
Q ss_pred hhcCCCCHHHHHHhhCCCC
Q 033572 47 RASKMMAEPEARQILGVTE 65 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~ 65 (116)
....+||++|-..+||-+.
T Consensus 11 ~i~~GmTk~qV~~lLG~P~ 29 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPS 29 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-S
T ss_pred hhcCCCCHHHHHHhcCCCC
Confidence 4467899999999999654
No 157
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=20.04 E-value=1.4e+02 Score=21.75 Aligned_cols=32 Identities=13% Similarity=-0.047 Sum_probs=19.8
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||.+|...+||++.+.-+..+..+-++|
T Consensus 155 ~~~~~s~~EIA~~Lgis~~tVk~~l~ra~~~L 186 (194)
T PRK09646 155 YYGGLTYREVAERLAVPLGTVKTRMRDGLIRL 186 (194)
T ss_pred HHcCCCHHHHHHHhCCChHhHHHHHHHHHHHH
Confidence 35678888888888886665444444444443
Done!