Query 033572
Match_columns 116
No_of_seqs 117 out of 583
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 05:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_B Mitochondrial import in 99.9 1.9E-26 6.5E-31 149.3 7.7 59 52-110 1-64 (65)
2 2guz_A Mitochondrial import in 99.6 3.1E-15 1.1E-19 96.6 8.3 62 45-106 4-68 (71)
3 1faf_A Large T antigen; J doma 98.9 3.7E-09 1.3E-13 69.3 6.5 58 52-109 8-69 (79)
4 1iur_A KIAA0730 protein; DNAJ 98.6 2E-07 6.7E-12 62.5 6.9 61 49-109 10-77 (88)
5 2ys8_A RAB-related GTP-binding 98.3 1.6E-06 5.5E-11 57.6 6.9 56 54-109 26-86 (90)
6 2o37_A Protein SIS1; HSP40, J- 98.3 1.2E-06 4.2E-11 58.2 6.0 55 52-106 5-62 (92)
7 2dn9_A DNAJ homolog subfamily 98.3 1.5E-06 5E-11 55.9 5.8 57 51-107 3-65 (79)
8 2yua_A Williams-beuren syndrom 98.2 1.5E-06 5E-11 58.6 5.3 58 49-106 11-74 (99)
9 2ctr_A DNAJ homolog subfamily 98.2 2.3E-06 8E-11 56.3 6.0 54 52-105 4-62 (88)
10 2och_A Hypothetical protein DN 98.2 6.5E-06 2.2E-10 52.2 6.6 52 55-106 8-62 (73)
11 2ctp_A DNAJ homolog subfamily 98.1 1.2E-06 4.2E-11 56.2 3.1 55 52-106 4-63 (78)
12 2ej7_A HCG3 gene; HCG3 protein 98.1 3E-06 1E-10 54.7 4.2 52 54-105 8-66 (82)
13 2ctw_A DNAJ homolog subfamily 98.1 4.3E-06 1.5E-10 57.3 5.0 57 50-106 12-74 (109)
14 1gh6_A Large T antigen; tumor 98.1 2.1E-06 7.1E-11 60.0 3.4 55 55-109 8-66 (114)
15 2dmx_A DNAJ homolog subfamily 98.1 9E-06 3.1E-10 53.7 6.0 53 55-107 9-68 (92)
16 2cug_A Mkiaa0962 protein; DNAJ 98.1 1E-05 3.6E-10 53.1 6.3 54 54-107 16-74 (88)
17 2lgw_A DNAJ homolog subfamily 98.0 1E-05 3.6E-10 54.7 5.9 51 57-107 4-61 (99)
18 1wjz_A 1700030A21RIK protein; 98.0 1.6E-06 5.6E-11 57.2 1.5 56 49-104 10-77 (94)
19 2l6l_A DNAJ homolog subfamily 98.0 6.9E-06 2.4E-10 59.0 4.7 56 50-105 5-72 (155)
20 2pf4_E Small T antigen; PP2A, 98.0 4.1E-06 1.4E-10 62.7 3.4 56 53-108 9-68 (174)
21 1hdj_A Human HSP40, HDJ-1; mol 98.0 1.1E-05 3.7E-10 51.6 4.9 50 57-106 5-59 (77)
22 2ctq_A DNAJ homolog subfamily 98.0 1.3E-05 4.4E-10 55.1 5.5 55 52-106 17-77 (112)
23 2qsa_A DNAJ homolog DNJ-2; J-d 97.9 2.5E-05 8.6E-10 53.1 6.0 54 54-107 14-77 (109)
24 1bq0_A DNAJ, HSP40; chaperone, 97.6 2.1E-05 7.2E-10 53.0 1.4 50 57-106 5-60 (103)
25 3apq_A DNAJ homolog subfamily 97.4 0.00025 8.6E-09 51.5 5.6 50 57-106 4-59 (210)
26 3lz8_A Putative chaperone DNAJ 97.3 2.9E-05 9.8E-10 62.6 0.0 58 49-106 22-84 (329)
27 2qwo_B Putative tyrosine-prote 97.3 0.00014 4.6E-09 49.2 2.8 48 57-104 35-91 (92)
28 3hho_A CO-chaperone protein HS 97.1 0.00094 3.2E-08 49.1 6.0 50 57-106 6-68 (174)
29 1fpo_A HSC20, chaperone protei 97.1 0.00094 3.2E-08 49.0 5.7 50 58-107 4-66 (171)
30 1n4c_A Auxilin; four helix bun 96.8 0.00072 2.5E-08 50.8 3.2 53 55-107 117-178 (182)
31 3bvo_A CO-chaperone protein HS 96.6 0.0034 1.2E-07 47.5 5.8 52 55-106 43-107 (207)
32 3ag7_A Putative uncharacterize 96.3 0.0047 1.6E-07 42.2 4.2 46 58-104 44-102 (106)
33 3apo_A DNAJ homolog subfamily 95.5 0.0043 1.5E-07 53.1 1.7 56 52-107 18-79 (780)
34 3uo3_A J-type CO-chaperone JAC 95.5 0.0095 3.3E-07 44.1 3.3 50 57-106 13-72 (181)
35 2y4t_A DNAJ homolog subfamily 71.9 4.4 0.00015 30.3 4.2 47 58-104 385-440 (450)
36 3hug_A RNA polymerase sigma fa 49.1 9.6 0.00033 23.8 2.1 34 47-80 49-82 (92)
37 2o8x_A Probable RNA polymerase 45.0 12 0.0004 21.6 1.9 21 47-67 27-47 (70)
38 2zrr_A Mundticin KS immunity p 42.8 31 0.0011 24.0 4.0 44 54-99 34-86 (118)
39 1ifw_A Polyadenylate-binding p 38.6 31 0.0011 22.9 3.4 26 89-114 65-90 (92)
40 2jpc_A SSRB; DNA binding prote 37.7 11 0.00037 21.4 0.9 31 48-82 10-40 (61)
41 1ug2_A 2610100B20RIK gene prod 37.0 23 0.00079 23.8 2.5 17 67-83 68-84 (95)
42 1ku3_A Sigma factor SIGA; heli 36.8 19 0.00064 21.4 1.9 31 50-80 29-59 (73)
43 2p7v_B Sigma-70, RNA polymeras 36.7 13 0.00045 21.7 1.2 29 49-81 23-51 (68)
44 1tty_A Sigma-A, RNA polymerase 34.4 21 0.00072 22.1 1.9 30 50-83 37-66 (87)
45 3mzy_A RNA polymerase sigma-H 33.3 22 0.00074 23.1 2.0 19 48-66 121-139 (164)
46 1je8_A Nitrate/nitrite respons 32.6 18 0.0006 22.3 1.3 32 48-83 33-64 (82)
47 3e02_A Uncharacterized protein 31.7 24 0.00083 27.9 2.3 18 49-66 289-306 (311)
48 3e49_A Uncharacterized protein 31.6 24 0.00083 27.9 2.3 18 49-66 289-306 (311)
49 1x3u_A Transcriptional regulat 31.5 19 0.00065 21.2 1.3 32 48-83 28-59 (79)
50 1xsv_A Hypothetical UPF0122 pr 30.4 25 0.00087 23.1 1.9 34 47-80 37-70 (113)
51 1j9i_A GPNU1 DBD;, terminase s 30.2 16 0.00056 21.6 0.8 15 52-66 3-17 (68)
52 2lfw_A PHYR sigma-like domain; 29.9 24 0.00081 23.8 1.7 34 48-81 106-139 (157)
53 1fse_A GERE; helix-turn-helix 29.4 29 0.00097 20.0 1.9 32 48-83 23-54 (74)
54 1i2t_A HYD protein; four alpha 29.4 44 0.0015 20.5 2.7 16 89-104 44-59 (61)
55 2y7e_A 3-keto-5-aminohexanoate 29.4 25 0.00085 27.5 1.9 17 49-65 266-282 (282)
56 1ztd_A Hypothetical protein PF 29.2 65 0.0022 22.6 3.9 37 47-83 81-124 (133)
57 3t72_q RNA polymerase sigma fa 29.0 33 0.0011 22.3 2.3 33 50-82 38-70 (99)
58 2p1m_A SKP1-like protein 1A; F 28.8 91 0.0031 21.6 4.7 29 49-77 125-156 (160)
59 3c57_A Two component transcrip 28.7 28 0.00095 21.9 1.8 31 49-79 40-70 (95)
60 3lot_A Uncharacterized protein 27.0 30 0.001 27.4 2.0 18 49-66 292-309 (314)
61 1s7o_A Hypothetical UPF0122 pr 27.0 28 0.00095 23.1 1.6 32 48-79 35-66 (113)
62 3chv_A Prokaryotic domain of u 26.7 32 0.0011 26.8 2.2 18 49-66 264-281 (284)
63 3no5_A Uncharacterized protein 26.6 32 0.0011 26.7 2.1 16 49-64 260-275 (275)
64 1or7_A Sigma-24, RNA polymeras 26.1 31 0.0011 23.3 1.8 20 48-67 153-172 (194)
65 3v7d_A Suppressor of kinetocho 25.5 58 0.002 23.0 3.2 23 49-71 133-155 (169)
66 1b4u_A LIGA, LIGB, protocatech 25.5 56 0.0019 23.2 3.1 13 84-96 84-96 (139)
67 1pdo_A Mannose permease; phosp 25.4 41 0.0014 22.6 2.3 34 59-92 31-75 (135)
68 3c6c_A 3-keto-5-aminohexanoate 24.2 36 0.0012 27.1 2.0 18 49-66 298-315 (316)
69 3uzo_A Branched-chain-amino-ac 23.6 40 0.0014 26.8 2.2 37 55-92 102-145 (358)
70 3sz7_A HSC70 cochaperone (SGT) 23.5 1.5E+02 0.005 18.8 7.3 47 68-114 94-140 (164)
71 1rp3_A RNA polymerase sigma fa 23.4 38 0.0013 23.5 1.9 20 48-67 200-219 (239)
72 4dqn_A Putative branched-chain 23.2 41 0.0014 26.5 2.2 37 55-92 87-130 (345)
73 3dth_A Branched-chain amino ac 22.6 45 0.0015 26.8 2.3 36 55-91 107-149 (372)
74 1jyr_A Growth factor receptor- 22.4 43 0.0015 21.1 1.8 17 48-64 6-22 (96)
75 3us4_A Megakaryocyte-associate 22.3 43 0.0015 20.9 1.8 15 48-62 8-22 (98)
76 2rnj_A Response regulator prot 22.1 21 0.00073 22.1 0.3 32 48-83 41-72 (91)
77 1lkk_A Human P56 tyrosine kina 21.8 44 0.0015 21.1 1.8 15 48-62 7-21 (105)
78 1l3l_A Transcriptional activat 21.7 41 0.0014 24.1 1.8 32 48-79 185-216 (234)
79 3lfh_A Manxa, phosphotransfera 21.4 62 0.0021 22.3 2.6 35 59-93 33-79 (144)
80 2q0o_A Probable transcriptiona 21.2 43 0.0015 24.1 1.8 31 49-79 188-218 (236)
81 2ekx_A Cytoplasmic tyrosine-pr 21.2 46 0.0016 21.3 1.8 16 47-62 13-28 (110)
82 2cia_A Cytoplasmic protein NCK 21.1 47 0.0016 21.1 1.8 15 47-61 7-21 (102)
83 1i4j_A 50S ribosomal protein L 21.1 52 0.0018 22.0 2.1 27 48-74 23-49 (110)
84 1d4t_A T cell signal transduct 21.0 48 0.0016 21.0 1.8 16 47-62 6-21 (104)
85 1rja_A Tyrosine-protein kinase 20.8 48 0.0016 20.9 1.8 16 48-63 5-20 (100)
86 1nrv_A Growth factor receptor- 20.8 48 0.0016 21.0 1.8 15 48-62 8-22 (105)
87 1r1p_A GRB2-related adaptor pr 20.7 47 0.0016 21.0 1.8 17 47-63 11-27 (100)
88 1aot_F FYN protein-tyrosine ki 20.5 47 0.0016 21.0 1.7 15 48-62 8-22 (106)
89 2ast_A S-phase kinase-associat 20.3 92 0.0031 21.4 3.3 23 49-71 126-148 (159)
90 2lr8_A CAsp8-associated protei 25.5 22 0.00075 22.7 0.0 17 67-83 48-64 (70)
91 3reb_B Tyrosine-protein kinase 20.1 22 0.00075 22.0 0.0 21 48-68 67-87 (90)
92 1q90_G Cytochrome B6F complex 20.0 1.3E+02 0.0044 16.8 3.7 29 1-29 1-30 (37)
No 1
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-26 Score=149.31 Aligned_cols=59 Identities=41% Similarity=0.579 Sum_probs=56.6
Q ss_pred CCHHHHHHhhCCCCC---CCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 033572 52 MAEPEARQILGVTEQ---SSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKH 110 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~---~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~~ 110 (116)
||++||++||||+++ ++.++|+++||+||..| |+|||||||+|||+|||+|+++++..+
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~~~~ 64 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELAQRE 64 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999 89999999999999999 999999999999999999999997654
No 2
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.1e-15 Score=96.63 Aligned_cols=62 Identities=29% Similarity=0.304 Sum_probs=58.4
Q ss_pred hhhhcCCCCHHHHHHhhCCCC-CCCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHH
Q 033572 45 IRRASKMMAEPEARQILGVTE-QSSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVY 106 (116)
Q Consensus 45 ~~~~~~~Ms~~EA~~ILgv~~-~~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el 106 (116)
.|+|...|+.+||++||||++ +++.++|+++|++|+..+ |+|||++...+||+|+++|....
T Consensus 4 ~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~ 68 (71)
T 2guz_A 4 KGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRG 68 (71)
T ss_dssp CSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 478899999999999999999 799999999999999999 99999999999999999998753
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=98.89 E-value=3.7e-09 Score=69.29 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=53.1
Q ss_pred CCHHHHHHhhCCCCC--CCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572 52 MAEPEARQILGVTEQ--SSWEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~ 109 (116)
.+..+++.||||+++ ++.++|+++||+|.... |+||++-.-.+||+|+++|...+...
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~ 69 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNL 69 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 456789999999999 99999999999999999 99999999999999999999877654
No 4
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=98.55 E-value=2e-07 Score=62.47 Aligned_cols=61 Identities=13% Similarity=-0.024 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-----HHHHHHHHHHHHHHHHHHhhh
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-----FYLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-----~YL~sKin~Ak~~L~~el~~~ 109 (116)
-..|+..|++.||||+++++.++|+++|++|.... |+++. .-.-.+|++|+++|......+
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35799999999999999999999999999999999 88765 234468999999999877543
No 5
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=1.6e-06 Score=57.58 Aligned_cols=56 Identities=25% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC---CCHHHHHHHHHHHHHHHHHHhhh
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN---GSFYLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg---GS~YL~sKin~Ak~~L~~el~~~ 109 (116)
......||||+++++.++|+++|++|.... |++ ++.-.-.+|++|+++|....+..
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 356789999999999999999999999999 887 77777889999999998876543
No 6
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.2e-06 Score=58.22 Aligned_cols=55 Identities=22% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCHHHHHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSFYLQSKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~YL~sKin~Ak~~L~~el 106 (116)
|.......||||+++++.++|+++|++|.... |++ ++.-.-.+|++|+++|....
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~ 62 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQ 62 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHH
Confidence 35568999999999999999999999999999 775 78888889999999996543
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=1.5e-06 Score=55.87 Aligned_cols=57 Identities=28% Similarity=0.225 Sum_probs=46.6
Q ss_pred CCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHHHHHHHh
Q 033572 51 MMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS----FYLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 51 ~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS----~YL~sKin~Ak~~L~~el~ 107 (116)
.++......||||+++++.++|+++|++|.... |++++ .-.-.+|++|+++|.....
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 355567899999999999999999999999998 87764 2344689999999976543
No 8
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.5e-06 Score=58.56 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=49.2
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el 106 (116)
...|+......||||+++++.++|+++|++|.... |+.+ ++ -.-.+|++|+++|....
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~ 74 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHH
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHH
Confidence 56799999999999999999999999999999999 8875 33 34567999999996543
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=2.3e-06 Score=56.32 Aligned_cols=54 Identities=26% Similarity=0.203 Sum_probs=46.0
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSFY---LQSKVHRAKECLETV 105 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~Y---L~sKin~Ak~~L~~e 105 (116)
++......||||+++++.++|+++|++|.... |+++++. .-.+|++|+++|...
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~ 62 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDA 62 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCH
Confidence 44557899999999999999999999999998 8888754 445799999999653
No 10
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=98.15 E-value=6.5e-06 Score=52.23 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=44.5
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-HHHHHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-FYLQSKVHRAKECLETVY 106 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~YL~sKin~Ak~~L~~el 106 (116)
.....||||+++++.++|+++|++|.... |++++ .-.-.+|++|+++|....
T Consensus 8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~ 62 (73)
T 2och_A 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEK 62 (73)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHH
Confidence 45789999999999999999999999998 77654 567778999999996544
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=56.21 Aligned_cols=55 Identities=24% Similarity=0.161 Sum_probs=46.2
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el 106 (116)
++......||||+++++.++|+++|++|.... |+++++ -.-.+|++|+++|....
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~ 63 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHH
Confidence 55667899999999999999999999999998 887554 45568999999996543
No 12
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=3e-06 Score=54.74 Aligned_cols=52 Identities=29% Similarity=0.208 Sum_probs=43.6
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-----HHHHHHHHHHHHHHHH
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-----YLQSKVHRAKECLETV 105 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-----YL~sKin~Ak~~L~~e 105 (116)
......||||+++++.++|+++|++|.... |++++. -.-.+|++|+++|...
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~ 66 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDA 66 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSST
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCH
Confidence 356899999999999999999999999988 887653 2456899999999643
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.08 E-value=4.3e-06 Score=57.27 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H---HHHHHHHHHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~---YL~sKin~Ak~~L~~el 106 (116)
..++......||||+++++.++|+++|++|.... |+++. + -.-.+|++|+++|....
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~ 74 (109)
T 2ctw_A 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74 (109)
T ss_dssp TTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred cCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 4566678999999999999999999999999998 88764 3 34468999999996543
No 14
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=98.08 E-value=2.1e-06 Score=59.96 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=49.0
Q ss_pred HHHHHhhCCCCCCCH--HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhhh
Q 033572 55 PEARQILGVTEQSSW--EEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKK 109 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~--~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~~ 109 (116)
.....||||+++++. ++|+++||+|.+.. |++|+.-.-.+|++|+++|....+..
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~ 66 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYA 66 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHH
Confidence 567889999999888 99999999999999 99999877789999999998877654
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=9e-06 Score=53.70 Aligned_cols=53 Identities=28% Similarity=0.218 Sum_probs=44.6
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-----HHHHHHHHHHHHHHHHHh
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-----YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-----YL~sKin~Ak~~L~~el~ 107 (116)
.....||||+++++.++|+++|++|.... |++++. -.-.+|++|+++|.....
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 68 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHH
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence 46899999999999999999999999998 887652 345689999999976543
No 16
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=98.05 E-value=1e-05 Score=53.14 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=45.1
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH---HHHHHHHHHHHHHHHHHh
Q 033572 54 EPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF---YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 54 ~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~---YL~sKin~Ak~~L~~el~ 107 (116)
......||||+++++.++|+++|++|.... |+++++ -.-.+|++|+++|.....
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHH
Confidence 356899999999999999999999999998 887643 445689999999976543
No 17
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=98.02 E-value=1e-05 Score=54.71 Aligned_cols=51 Identities=27% Similarity=0.166 Sum_probs=42.7
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH-----HHHHHHHHHHHHHHHHHh
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF-----YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~-----YL~sKin~Ak~~L~~el~ 107 (116)
...||||+++++.++|+++|++|.... |++++. -.-.+|++|+++|....+
T Consensus 4 ~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~ 61 (99)
T 2lgw_A 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61 (99)
T ss_dssp HHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHH
Confidence 468999999999999999999999999 887653 345689999999966543
No 18
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=98.00 E-value=1.6e-06 Score=57.24 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=46.7
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC----------CHHHHHHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG----------SFYLQSKVHRAKECLET 104 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG----------S~YL~sKin~Ak~~L~~ 104 (116)
...|+......||||+++++.++|+++|++|.... |+.. ..-.-.+|++|+++|..
T Consensus 10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d 77 (94)
T 1wjz_A 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77 (94)
T ss_dssp CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCC
Confidence 35578889999999999999999999999999998 7743 23455689999999953
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=97.98 E-value=6.9e-06 Score=58.99 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCCH----------HHHHHHHHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGSF----------YLQSKVHRAKECLETV 105 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS~----------YL~sKin~Ak~~L~~e 105 (116)
+.|+......||||+++++.++|+++|++|.... |+.+++ -.-.+|++|+++|...
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp 72 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCH
Confidence 4577778999999999999999999999999999 876543 5667899999999643
No 20
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=97.97 E-value=4.1e-06 Score=62.66 Aligned_cols=56 Identities=14% Similarity=0.084 Sum_probs=46.4
Q ss_pred CHHHHHHhhCCCCCCC--HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHhh
Q 033572 53 AEPEARQILGVTEQSS--WEEILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQK 108 (116)
Q Consensus 53 s~~EA~~ILgv~~~~~--~~~I~~~~~~L~~~N--dkgGS~YL~sKin~Ak~~L~~el~~ 108 (116)
...++..||||+++++ .++|+++||+|.... |++|++-.-.+|++|+++|....+.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR 68 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKY 68 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3467999999999977 699999999999999 9999987788999999999876654
No 21
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=97.96 E-value=1.1e-05 Score=51.60 Aligned_cols=50 Identities=24% Similarity=0.157 Sum_probs=42.3
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el 106 (116)
...||||+++++.++|+++|++|.... |++++ .-.-.+|++|+++|....
T Consensus 5 ~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~ 59 (77)
T 1hdj_A 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPR 59 (77)
T ss_dssp SHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHH
Confidence 468999999999999999999999998 87754 456678999999995543
No 22
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.3e-05 Score=55.05 Aligned_cols=55 Identities=25% Similarity=0.222 Sum_probs=46.1
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHHHHHHH
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS----FYLQSKVHRAKECLETVY 106 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS----~YL~sKin~Ak~~L~~el 106 (116)
++......||||+++++.++|+++|++|.... |+++. .-.-.+|++|+++|....
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~ 77 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEE 77 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHH
Confidence 45577899999999999999999999999998 88763 345568999999996544
No 23
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=97.89 E-value=2.5e-05 Score=53.08 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=45.5
Q ss_pred HHHHHHhhCCCCCC-CHHHHHHHHHHHHHHh--cCCCC-------HHHHHHHHHHHHHHHHHHh
Q 033572 54 EPEARQILGVTEQS-SWEEILKKYDNLFEQN--AKNGS-------FYLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 54 ~~EA~~ILgv~~~~-~~~~I~~~~~~L~~~N--dkgGS-------~YL~sKin~Ak~~L~~el~ 107 (116)
......||||++++ +.++|+++|++|.... |++++ .-.-.+|++|+++|....+
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~ 77 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHH
Confidence 35689999999998 9999999999999999 88876 3455689999999975543
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=97.55 E-value=2.1e-05 Score=53.04 Aligned_cols=50 Identities=26% Similarity=0.257 Sum_probs=40.9
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC-H---HHHHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS-F---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS-~---YL~sKin~Ak~~L~~el 106 (116)
...||||+++++.++|+++|++|.+.. |++++ + -.-.+|++|+++|....
T Consensus 5 ~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~ 60 (103)
T 1bq0_A 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60 (103)
T ss_dssp STTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSH
T ss_pred HHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHH
Confidence 468999999999999999999999998 87764 2 34467999999886543
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=97.40 E-value=0.00025 Score=51.48 Aligned_cols=50 Identities=28% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el 106 (116)
...||||+++++.++|+++||+|.... |+++ ++ -.-.+|++|+++|....
T Consensus 4 ~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~ 59 (210)
T 3apq_A 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDED 59 (210)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence 468999999999999999999999998 8764 33 23346999999996543
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=97.35 E-value=2.9e-05 Score=62.58 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCCC---HHHHHHHHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNGS---FYLQSKVHRAKECLETVY 106 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgGS---~YL~sKin~Ak~~L~~el 106 (116)
...|+......||||+++++.++|+++||+|.... |++.. .---.+|++|+++|....
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~ 84 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQ 84 (329)
T ss_dssp ---------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhh
Confidence 45699999999999999999999999999999998 77644 334457999999997653
No 27
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=97.29 E-value=0.00014 Score=49.20 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=38.9
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHh--cCC-CCH--HHH----HHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSSWEEILKKYDNLFEQN--AKN-GSF--YLQ----SKVHRAKECLET 104 (116)
Q Consensus 57 A~~ILgv~~~~~~~~I~~~~~~L~~~N--dkg-GS~--YL~----sKin~Ak~~L~~ 104 (116)
-..+|||++.++.++|+++||+|.... |+. |.+ ..+ ..|++|+++|..
T Consensus 35 ~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp SCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999998 654 332 333 368999999875
No 28
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=97.11 E-value=0.00094 Score=49.10 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=40.4
Q ss_pred HHHhhCCCCCCC--HHHHHHHHHHHHHHh--cCCC--CH-------HHHHHHHHHHHHHHHHH
Q 033572 57 ARQILGVTEQSS--WEEILKKYDNLFEQN--AKNG--SF-------YLQSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~ILgv~~~~~--~~~I~~~~~~L~~~N--dkgG--S~-------YL~sKin~Ak~~L~~el 106 (116)
-..||||+++++ .++|+++|++|.... |+.+ +. -.-.+||+|+++|....
T Consensus 6 ~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~ 68 (174)
T 3hho_A 6 YFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPL 68 (174)
T ss_dssp HHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChH
Confidence 468999999866 999999999999999 7643 22 35578999999996544
No 29
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=97.07 E-value=0.00094 Score=49.04 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=40.7
Q ss_pred HHhhCCCCCC--CHHHHHHHHHHHHHHh--cCCC--CH-------HHHHHHHHHHHHHHHHHh
Q 033572 58 RQILGVTEQS--SWEEILKKYDNLFEQN--AKNG--SF-------YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 58 ~~ILgv~~~~--~~~~I~~~~~~L~~~N--dkgG--S~-------YL~sKin~Ak~~L~~el~ 107 (116)
+.||||++++ +.++|+++|++|.... |+.+ ++ -.-.+||+|+++|....+
T Consensus 4 y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~ 66 (171)
T 1fpo_A 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLM 66 (171)
T ss_dssp HHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 6799999987 9999999999999998 7643 33 245789999999975443
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=96.81 E-value=0.00072 Score=50.76 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=43.2
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH------HHHHHHHHHHHHHHHHHh
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF------YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~------YL~sKin~Ak~~L~~el~ 107 (116)
+....||||++.++.++|+++|++|.... |+.. .+ -.-.+|++|+++|...-+
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k 178 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence 46789999999999999999999999999 7743 22 244579999999987654
No 31
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=96.62 E-value=0.0034 Score=47.47 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHHhhCCCCC--CCHHHHHHHHHHHHHHh--cCCC--CHH-------HHHHHHHHHHHHHHHH
Q 033572 55 PEARQILGVTEQ--SSWEEILKKYDNLFEQN--AKNG--SFY-------LQSKVHRAKECLETVY 106 (116)
Q Consensus 55 ~EA~~ILgv~~~--~~~~~I~~~~~~L~~~N--dkgG--S~Y-------L~sKin~Ak~~L~~el 106 (116)
..-+.||||+++ ++.++|+++||+|.... |+.+ +.- .-.+||+|+++|....
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~ 107 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPL 107 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 356899999986 78999999999999998 7754 221 2368999999997533
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=96.26 E-value=0.0047 Score=42.19 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=35.3
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHh--cC----CCCHH---H----HHHHHHHHHHHHH
Q 033572 58 RQILGVTEQSSWEEILKKYDNLFEQN--AK----NGSFY---L----QSKVHRAKECLET 104 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~~~N--dk----gGS~Y---L----~sKin~Ak~~L~~ 104 (116)
..|||++. ++.++|+++||+|.... |+ |.++- . -.+|++|+++|..
T Consensus 44 Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 44 KPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp CCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 45888885 99999999999999988 65 44532 2 2469999999853
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=95.51 E-value=0.0043 Score=53.10 Aligned_cols=56 Identities=25% Similarity=0.191 Sum_probs=31.0
Q ss_pred CCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh--cCCC-CH---HHHHHHHHHHHHHHHHHh
Q 033572 52 MAEPEARQILGVTEQSSWEEILKKYDNLFEQN--AKNG-SF---YLQSKVHRAKECLETVYQ 107 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N--dkgG-S~---YL~sKin~Ak~~L~~el~ 107 (116)
.....-..||||+++++.++|+++||+|.... |+++ ++ ---.+|++|+++|....+
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~ 79 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDL 79 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHH
Confidence 34456789999999999999999999999998 8763 33 233579999999976543
No 34
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=95.47 E-value=0.0095 Score=44.14 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHhh------CCCC-CCCHHHHHHHHHHHHHHh--cCCC-CHHHHHHHHHHHHHHHHHH
Q 033572 57 ARQIL------GVTE-QSSWEEILKKYDNLFEQN--AKNG-SFYLQSKVHRAKECLETVY 106 (116)
Q Consensus 57 A~~IL------gv~~-~~~~~~I~~~~~~L~~~N--dkgG-S~YL~sKin~Ak~~L~~el 106 (116)
=..|| |+.+ +++.++|+++|++|-... |+.+ +.-.-.+||+|+++|....
T Consensus 13 ~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~ 72 (181)
T 3uo3_A 13 FYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPL 72 (181)
T ss_dssp TGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHH
T ss_pred HHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChH
Confidence 46788 4555 799999999999999998 8866 4555678999999996543
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=71.90 E-value=4.4 Score=30.30 Aligned_cols=47 Identities=28% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHH-HHh-cCCCCHH-------HHHHHHHHHHHHHH
Q 033572 58 RQILGVTEQSSWEEILKKYDNLF-EQN-AKNGSFY-------LQSKVHRAKECLET 104 (116)
Q Consensus 58 ~~ILgv~~~~~~~~I~~~~~~L~-~~N-dkgGS~Y-------L~sKin~Ak~~L~~ 104 (116)
..+||+....+.++|++.|+++- ..+ |+..++- .-..|++|.++|..
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 56888888888999999999854 444 7766653 44568888887744
No 36
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.15 E-value=9.6 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=23.8
Q ss_pred hhcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 47 RASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
.+..+||..|...+||++...-+.-+..+.++|-
T Consensus 49 ~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 49 SYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp HHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3577899999999999987654444444444443
No 37
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.01 E-value=12 Score=21.56 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=17.1
Q ss_pred hhcCCCCHHHHHHhhCCCCCC
Q 033572 47 RASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~ 67 (116)
.+..++|..|...+||+++..
T Consensus 27 ~~~~g~s~~eIA~~lgis~~t 47 (70)
T 2o8x_A 27 TQLLGLSYADAAAVCGCPVGT 47 (70)
T ss_dssp HHTSCCCHHHHHHHHTSCHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHH
Confidence 346789999999999997653
No 38
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=42.83 E-value=31 Score=24.04 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHHHhhC-----CCCCCC---HHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 033572 54 EPEARQILG-----VTEQSS---WEEILKKYDNLFEQNAKNGS-FYLQSKVHRAK 99 (116)
Q Consensus 54 ~~EA~~ILg-----v~~~~~---~~~I~~~~~~L~~~NdkgGS-~YL~sKin~Ak 99 (116)
.+||..|+. ++.+.. ..+|...|+.=++ ++|+| |||-|+.|-.-
T Consensus 34 ~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk--~~~tSvPfILSRMNldI 86 (118)
T 2zrr_A 34 RKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLK--NEGTSVPLVLSRMNIEI 86 (118)
T ss_dssp HHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh--cCCCCchhHHHHhhHHH
Confidence 467776653 343333 3445555554322 57788 99999998654
No 39
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=38.64 E-value=31 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCC
Q 033572 89 FYLQSKVHRAKECLETVYQKKHQGTE 114 (116)
Q Consensus 89 ~YL~sKin~Ak~~L~~el~~~~~~~~ 114 (116)
.-|.+||++|-++|...-+...+-|+
T Consensus 65 e~L~~kV~EA~~vL~~~~~~~~~~~~ 90 (92)
T 1ifw_A 65 ELFEQHYKEASAAYESFKKEQEQQTE 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 36999999999999888766555554
No 40
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.65 E-value=11 Score=21.35 Aligned_cols=31 Identities=6% Similarity=0.101 Sum_probs=21.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQ 82 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~ 82 (116)
+..+||..|-..+||+++.. |..+..+++..
T Consensus 10 ~~~g~s~~eIA~~l~is~~t----V~~~~~~~~~k 40 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKT----VETHRMNMMRK 40 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHH----HHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHH----HHHHHHHHHHH
Confidence 35679999999999997643 44444444443
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=36.97 E-value=23 Score=23.83 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHh
Q 033572 67 SSWEEILKKYDNLFEQN 83 (116)
Q Consensus 67 ~~~~~I~~~~~~L~~~N 83 (116)
-++++|.+||+.||.+-
T Consensus 68 ks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 47799999999999986
No 42
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.83 E-value=19 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
.+||..|-..+||+++..-..-+..+.++|-
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999987654444555555543
No 43
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=36.66 E-value=13 Score=21.75 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
..+||..|--.+||+++.. |+....+.+.
T Consensus 23 ~~g~s~~eIA~~lgis~~t----V~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRER----IRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHH----HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHH----HHHHHHHHHH
Confidence 4689999999999997654 4444444443
No 44
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.44 E-value=21 Score=22.05 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=21.4
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
.+||..|...+||+++.. |+....+.+..-
T Consensus 37 ~~~s~~EIA~~lgis~~t----V~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRER----IRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHH----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHH----HHHHHHHHHHHH
Confidence 789999999999987644 555554444444
No 45
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.29 E-value=22 Score=23.13 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=12.6
Q ss_pred hcCCCCHHHHHHhhCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~ 66 (116)
+..+||..|-..+||++..
T Consensus 121 ~~~g~s~~EIA~~lgis~~ 139 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLK 139 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHH
T ss_pred HHcCCCHHHHHHHHCCCHH
Confidence 4566777777777776654
No 46
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=32.61 E-value=18 Score=22.26 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=22.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
+..+||..|-..+||++.. -|+.+.++++..-
T Consensus 33 ~~~g~s~~eIA~~l~is~~----tV~~~l~r~~~kL 64 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITES----TVKVHVKHMLKKM 64 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHH----HHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHH----HHHHHHHHHHHHH
Confidence 4578999999999998764 4444444444443
No 47
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=31.72 E-value=24 Score=27.88 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.9
Q ss_pred cCCCCHHHHHHhhCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~ 66 (116)
+..+|.+||++|||++..
T Consensus 289 r~vATp~EAR~iLgl~~~ 306 (311)
T 3e02_A 289 LDIATPDEARAMLKTKGA 306 (311)
T ss_dssp CCBCCHHHHHHHHTCCCG
T ss_pred CCCCCHHHHHHHhCCCcc
Confidence 678999999999999763
No 48
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}
Probab=31.61 E-value=24 Score=27.86 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.0
Q ss_pred cCCCCHHHHHHhhCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~ 66 (116)
+..+|.+||++|||++..
T Consensus 289 r~vATp~EAR~iLgl~~~ 306 (311)
T 3e49_A 289 LEVASPAEARTMLGLKGP 306 (311)
T ss_dssp CCBCCHHHHHHHHTCCCT
T ss_pred CCCCCHHHHHHHhCCCcc
Confidence 678999999999999864
No 49
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.48 E-value=19 Score=21.25 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=23.3
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
+..+||..|...+||++. .-|+.+..+.+..-
T Consensus 28 ~~~g~s~~eIA~~l~is~----~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISP----RTVEVHRANVMAKM 59 (79)
T ss_dssp HTTTCCHHHHHHHTTSCH----HHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCH----HHHHHHHHHHHHHH
Confidence 357899999999999865 45666665555554
No 50
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.39 E-value=25 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=24.0
Q ss_pred hhcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 033572 47 RASKMMAEPEARQILGVTEQSSWEEILKKYDNLF 80 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~ 80 (116)
.+..+||..|...+||+++..-...+..+.++|-
T Consensus 37 ~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 70 (113)
T 1xsv_A 37 FYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3467899999999999988754444444444443
No 51
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.15 E-value=16 Score=21.64 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=13.3
Q ss_pred CCHHHHHHhhCCCCC
Q 033572 52 MAEPEARQILGVTEQ 66 (116)
Q Consensus 52 Ms~~EA~~ILgv~~~ 66 (116)
||..|+..+|||++.
T Consensus 3 lt~~e~a~~LgvS~~ 17 (68)
T 1j9i_A 3 VNKKQLADIFGASIR 17 (68)
T ss_dssp EEHHHHHHHTTCCHH
T ss_pred cCHHHHHHHHCcCHH
Confidence 788999999999874
No 52
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=29.88 E-value=24 Score=23.83 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=24.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFE 81 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~ 81 (116)
+..+||.+|...+||++++.-+..+..+-++|-.
T Consensus 106 ~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 106 AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999876555555555555443
No 53
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.43 E-value=29 Score=20.01 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=22.3
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
+..++|..|-...||+++ .-|..+.++++..-
T Consensus 23 ~~~g~s~~eIA~~l~is~----~tV~~~~~~~~~kl 54 (74)
T 1fse_A 23 LVQDKTTKEIASELFISE----KTVRNHISNAMQKL 54 (74)
T ss_dssp HTTTCCHHHHHHHHTSCH----HHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCH----HHHHHHHHHHHHHH
Confidence 456789999999999865 44555555555444
No 54
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=29.42 E-value=44 Score=20.47 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 033572 89 FYLQSKVHRAKECLET 104 (116)
Q Consensus 89 ~YL~sKin~Ak~~L~~ 104 (116)
..|.+||++|-++|..
T Consensus 44 e~L~~kv~EA~~vl~~ 59 (61)
T 1i2t_A 44 DSLRARVDEAMELIIA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788999999998864
No 55
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=29.38 E-value=25 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.8
Q ss_pred cCCCCHHHHHHhhCCCC
Q 033572 49 SKMMAEPEARQILGVTE 65 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~ 65 (116)
+..+|.+||++|||+++
T Consensus 266 r~vAtp~eAR~iLgl~~ 282 (282)
T 2y7e_A 266 RPLATPEQAREILALNK 282 (282)
T ss_dssp CCBCCHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHhCCCC
Confidence 56799999999999853
No 56
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=29.16 E-value=65 Score=22.57 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=27.7
Q ss_pred hhcCCCCHHHHHHhh--CCCCC-----CCHHHHHHHHHHHHHHh
Q 033572 47 RASKMMAEPEARQIL--GVTEQ-----SSWEEILKKYDNLFEQN 83 (116)
Q Consensus 47 ~~~~~Ms~~EA~~IL--gv~~~-----~~~~~I~~~~~~L~~~N 83 (116)
-+...||.+||-.|| |++++ -.+|-|-+++--|+++-
T Consensus 81 WleG~is~eEaveilk~nl~~dv~hfsrkKE~iG~A~~~ll~~i 124 (133)
T 1ztd_A 81 WLMGLISEREAVEIIKKNLYPEVLDFSKKKEAIGRALAPLLVII 124 (133)
T ss_dssp HHTTSSCHHHHHHHHHTTCCGGGGCTTTHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHhcCcHhhcchhHHHHHHHHHHHHHHHHH
Confidence 357789999999998 55655 23467888888887654
No 57
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=28.98 E-value=33 Score=22.35 Aligned_cols=33 Identities=15% Similarity=0.027 Sum_probs=25.0
Q ss_pred CCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 033572 50 KMMAEPEARQILGVTEQSSWEEILKKYDNLFEQ 82 (116)
Q Consensus 50 ~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~ 82 (116)
.+||.+|-..+||++...-+..+.++.++|-..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999876556666666655443
No 58
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=28.84 E-value=91 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHH---HHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEE---ILKKYD 77 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~---I~~~~~ 77 (116)
-.+.|.+|=++++||..+.++|+ |++-+.
T Consensus 125 ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~ 156 (160)
T 2p1m_A 125 IKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQ 156 (160)
T ss_dssp TTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCc
Confidence 45689999999999999887754 555443
No 59
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=28.75 E-value=28 Score=21.94 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=21.0
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
..+||..|-..+||++...-..-+...+++|
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5779999999999997654333344444443
No 60
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}
Probab=27.05 E-value=30 Score=27.43 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.8
Q ss_pred cCCCCHHHHHHhhCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~ 66 (116)
+..+|.+||++|||++..
T Consensus 292 r~vATp~EAR~iLgl~~~ 309 (314)
T 3lot_A 292 KRPATPDEVREILGLKGK 309 (314)
T ss_dssp CEECCHHHHHHHHTCCCG
T ss_pred CCCCCHHHHHHHhCCCCc
Confidence 678999999999999764
No 61
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=26.96 E-value=28 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=22.6
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
+..+||..|...+||+++..-..-+..+.++|
T Consensus 35 y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 35 YADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp HHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45789999999999999875444444444443
No 62
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=26.74 E-value=32 Score=26.82 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHhhCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~ 66 (116)
+..+|.+||++|||+++.
T Consensus 264 r~vAtp~eAR~iLgl~~~ 281 (284)
T 3chv_A 264 RPVASWQQAREILGLPAA 281 (284)
T ss_dssp CCBCCHHHHHHHTTCCSS
T ss_pred CCCCCHHHHHHHcCCCcc
Confidence 567999999999999753
No 63
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=26.56 E-value=32 Score=26.68 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=14.2
Q ss_pred cCCCCHHHHHHhhCCC
Q 033572 49 SKMMAEPEARQILGVT 64 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~ 64 (116)
+..+|.+||++|||+.
T Consensus 260 r~vAtp~eAR~iLgl~ 275 (275)
T 3no5_A 260 RPVATAAQAREIMSLG 275 (275)
T ss_dssp CCBCCHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHhCCC
Confidence 6789999999999974
No 64
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.08 E-value=31 Score=23.28 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=15.1
Q ss_pred hcCCCCHHHHHHhhCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~ 67 (116)
+..+||..|...+||+++..
T Consensus 153 ~~~g~s~~EIA~~lgis~~t 172 (194)
T 1or7_A 153 ELDGLSYEEIAAIMDCPVGT 172 (194)
T ss_dssp HTTCCCHHHHHHHTTSCHHH
T ss_pred HHcCCCHHHHHHHHCCCHHH
Confidence 45678888888888887643
No 65
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=25.51 E-value=58 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEE 71 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~ 71 (116)
-.+.|.+|=++++||+.+.++++
T Consensus 133 ikgktpeeiR~~f~I~nd~t~eE 155 (169)
T 3v7d_A 133 IRGRSPEEIRRTFNIVNDFTPEE 155 (169)
T ss_dssp HTTCCHHHHHHHHTCCCCCCHHH
T ss_pred HcCCCHHHHHHHcCCCCCCCHHH
Confidence 45789999999999999988765
No 66
>1b4u_A LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: a.88.1.1 PDB: 1bou_A
Probab=25.47 E-value=56 Score=23.24 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=11.5
Q ss_pred cCCCCHHHHHHHH
Q 033572 84 AKNGSFYLQSKVH 96 (116)
Q Consensus 84 dkgGS~YL~sKin 96 (116)
+-|||+|+..|+-
T Consensus 84 ~lGgn~y~L~K~~ 96 (139)
T 1b4u_A 84 DEGGNVYFLSKLF 96 (139)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 6799999999984
No 67
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=25.38 E-value=41 Score=22.64 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=24.5
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHHHhc-----------CCCCHHHH
Q 033572 59 QILGVTEQSSWEEILKKYDNLFEQNA-----------KNGSFYLQ 92 (116)
Q Consensus 59 ~ILgv~~~~~~~~I~~~~~~L~~~Nd-----------kgGS~YL~ 92 (116)
..+++.++.+.+++.++.+..+...| -||||+=.
T Consensus 31 ~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtDl~GGSp~n~ 75 (135)
T 1pdo_A 31 GWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNA 75 (135)
T ss_dssp EEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEESSTTSHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHH
Confidence 34456666788889999988887652 27999854
No 68
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM beta/alpha-barrel fold, structura genomics; HET: MSE; 1.72A {Ralstonia eutropha}
Probab=24.24 E-value=36 Score=27.06 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.1
Q ss_pred cCCCCHHHHHHhhCCCCC
Q 033572 49 SKMMAEPEARQILGVTEQ 66 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~ 66 (116)
+..+|.+||++|||++..
T Consensus 298 r~vATp~eAR~iLgL~~~ 315 (316)
T 3c6c_A 298 MSVATPDEARDIMGLSRP 315 (316)
T ss_dssp CEECCHHHHHHHHTCCC-
T ss_pred CCCCCHHHHHHHhCCCCC
Confidence 567999999999999753
No 69
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=23.60 E-value=40 Score=26.82 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=30.0
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh-c------CCCCHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN-A------KNGSFYLQ 92 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N-d------kgGS~YL~ 92 (116)
...++.|+++ ..+.+++.+.-+.+...| + .|++-||.
T Consensus 102 ~~Sa~~L~ip-~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR 145 (358)
T 3uzo_A 102 RMSCRRLLMP-ELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLR 145 (358)
T ss_dssp HHHHHHTTCC-CCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEE
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEE
Confidence 5678899997 789999999999999999 3 45666653
No 70
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=23.46 E-value=1.5e+02 Score=18.78 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 033572 68 SWEEILKKYDNLFEQNAKNGSFYLQSKVHRAKECLETVYQKKHQGTE 114 (116)
Q Consensus 68 ~~~~I~~~~~~L~~~NdkgGS~YL~sKin~Ak~~L~~el~~~~~~~~ 114 (116)
..++-.+.|++.+.++......|+..-+..++..+.+......+-++
T Consensus 94 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 140 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPAD 140 (164)
T ss_dssp CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 55788889999999997777888888899999998887776654443
No 71
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.43 E-value=38 Score=23.49 Aligned_cols=20 Identities=15% Similarity=0.150 Sum_probs=15.6
Q ss_pred hcCCCCHHHHHHhhCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQS 67 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~ 67 (116)
+..+||..|...+||++...
T Consensus 200 ~~~g~s~~EIA~~lgis~~~ 219 (239)
T 1rp3_A 200 FYEELPAKEVAKILETSVSR 219 (239)
T ss_dssp HTSCCCHHHHHHHTTSCHHH
T ss_pred HhcCCCHHHHHHHhCCCHHH
Confidence 46788888888888887653
No 72
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=23.24 E-value=41 Score=26.49 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=30.0
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh-c------CCCCHHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN-A------KNGSFYLQ 92 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N-d------kgGS~YL~ 92 (116)
...++.|+++ ..+.+++.+.-+.+...| . .|++.||.
T Consensus 87 ~~Sa~~L~i~-~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR 130 (345)
T 4dqn_A 87 QRTADRLLMP-QVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLR 130 (345)
T ss_dssp HHHHHHTTCC-CCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEE
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEE
Confidence 5678899998 689999999999999999 3 45666653
No 73
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=22.62 E-value=45 Score=26.78 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=29.9
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHHHh-c------CCCCHHH
Q 033572 55 PEARQILGVTEQSSWEEILKKYDNLFEQN-A------KNGSFYL 91 (116)
Q Consensus 55 ~EA~~ILgv~~~~~~~~I~~~~~~L~~~N-d------kgGS~YL 91 (116)
...++.|+++ ..+.+++.+.-+.+...| + .++|.||
T Consensus 107 ~~Sa~~L~mp-~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYi 149 (372)
T 3dth_A 107 QSSARRLAIP-ELPEEVFIESLRQLIAVDEKWVPPAGGEESLYL 149 (372)
T ss_dssp HHHHHHTTCC-CCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEE
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccccCCCCCCCCcEEE
Confidence 5667889997 688999999999999999 3 4677776
No 74
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=22.44 E-value=43 Score=21.10 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=14.2
Q ss_pred hcCCCCHHHHHHhhCCC
Q 033572 48 ASKMMAEPEARQILGVT 64 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~ 64 (116)
|...||++||..+|--.
T Consensus 6 yhg~isR~~Ae~lL~~~ 22 (96)
T 1jyr_A 6 FFGKIPRAKAEEMLSKQ 22 (96)
T ss_dssp BCCSCCHHHHHHHHHTC
T ss_pred eccCCCHHHHHHHHhcC
Confidence 56789999999999654
No 75
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain, signaling protein, structural genomics, joint CE structural genomics, JCSG; 1.50A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jwo_A
Probab=22.31 E-value=43 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.2
Q ss_pred hcCCCCHHHHHHhhC
Q 033572 48 ASKMMAEPEARQILG 62 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILg 62 (116)
|...||++||..+|-
T Consensus 8 yhg~isr~~Ae~lL~ 22 (98)
T 3us4_A 8 FHGKISGQEAVQQLQ 22 (98)
T ss_dssp BCCSCCHHHHHHHTC
T ss_pred cCCCCCHHHHHHHcc
Confidence 567899999999996
No 76
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.06 E-value=21 Score=22.10 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=22.5
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNLFEQN 83 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L~~~N 83 (116)
+..+||..|-..+||++. .-|+.+..+++..-
T Consensus 41 ~~~g~s~~eIA~~l~is~----~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 41 IAKGYSNQEIASASHITI----KTVKTHVSNILSKL 72 (91)
T ss_dssp HHTTCCTTHHHHHHTCCH----HHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCH----HHHHHHHHHHHHHH
Confidence 356899999999999866 44555555555544
No 77
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET: PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A* 1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L* 1cwe_A*
Probab=21.78 E-value=44 Score=21.08 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=13.0
Q ss_pred hcCCCCHHHHHHhhC
Q 033572 48 ASKMMAEPEARQILG 62 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILg 62 (116)
|...||++||..+|-
T Consensus 7 yhg~isR~~Ae~lL~ 21 (105)
T 1lkk_A 7 FFKNLSRKDAERQLL 21 (105)
T ss_dssp BCTTCCHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHH
Confidence 567899999999994
No 78
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=21.72 E-value=41 Score=24.14 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=22.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
...++|..|-..+||+++..-+.-+...+++|
T Consensus 185 ~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 185 IAVGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 35789999999999998754444444444443
No 79
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=21.44 E-value=62 Score=22.28 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.9
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHHHh-c-----------CCCCHHHHH
Q 033572 59 QILGVTEQSSWEEILKKYDNLFEQN-A-----------KNGSFYLQS 93 (116)
Q Consensus 59 ~ILgv~~~~~~~~I~~~~~~L~~~N-d-----------kgGS~YL~s 93 (116)
..+++.++.+.+++.++.+..+... | -|||||=..
T Consensus 33 ~av~~~~~~~~~~~~~~i~~~i~~~~~~~~gvliLtDl~GGSp~n~a 79 (144)
T 3lfh_A 33 HTVGLNLGDNIEVVRKEVEKIIKEKLQEDKEIIIVVDLFGGSPFNIA 79 (144)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHTTTCEEEEEESSSSSHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCCHHHHH
Confidence 3345556677888888888877653 2 489998553
No 80
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=21.23 E-value=43 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEEILKKYDNL 79 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~I~~~~~~L 79 (116)
..++|..|-..+||+++..-+.-+...+++|
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 5689999999999998755444444444444
No 81
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=21.20 E-value=46 Score=21.32 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=13.7
Q ss_pred hhcCCCCHHHHHHhhC
Q 033572 47 RASKMMAEPEARQILG 62 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILg 62 (116)
-|...||++||..+|-
T Consensus 13 Wyhg~isR~~Ae~lL~ 28 (110)
T 2ekx_A 13 WFAGNISRSQSEQLLR 28 (110)
T ss_dssp SBCCSCCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHh
Confidence 4678999999999994
No 82
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=21.09 E-value=47 Score=21.09 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=13.0
Q ss_pred hhcCCCCHHHHHHhh
Q 033572 47 RASKMMAEPEARQIL 61 (116)
Q Consensus 47 ~~~~~Ms~~EA~~IL 61 (116)
-|...||++||..+|
T Consensus 7 Wyhg~isR~~Ae~lL 21 (102)
T 2cia_A 7 WYYGNVTRHQAECAL 21 (102)
T ss_dssp TBCCSCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHH
Confidence 356789999999999
No 83
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=21.08 E-value=52 Score=21.97 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=20.1
Q ss_pred hcCCCCHHHHHHhhCCCCCCCHHHHHH
Q 033572 48 ASKMMAEPEARQILGVTEQSSWEEILK 74 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~~~~I~~ 74 (116)
.-.+|+.+||+.||.+.|.-.-+.|.+
T Consensus 23 ~IrG~~v~~Al~~L~~~pkkaa~~v~k 49 (110)
T 1i4j_A 23 LIRGKSLEEARNILRYTNKRGAYFVAK 49 (110)
T ss_dssp HHTTCBHHHHHHHHHHCCCTTHHHHHH
T ss_pred HHcCCcHHHHHHHHHHCCHHHHHHHHH
Confidence 356799999999999988644444443
No 84
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=20.96 E-value=48 Score=20.98 Aligned_cols=16 Identities=6% Similarity=0.029 Sum_probs=13.3
Q ss_pred hhcCCCCHHHHHHhhC
Q 033572 47 RASKMMAEPEARQILG 62 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILg 62 (116)
-|...||++||..+|-
T Consensus 6 Wyhg~isR~~Ae~lL~ 21 (104)
T 1d4t_A 6 VYHGKISRETGEKLLL 21 (104)
T ss_dssp TBCCSCCHHHHHHHHH
T ss_pred eEccCCCHHHHHHHHH
Confidence 3567899999999994
No 85
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=20.79 E-value=48 Score=20.88 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=13.6
Q ss_pred hcCCCCHHHHHHhhCC
Q 033572 48 ASKMMAEPEARQILGV 63 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv 63 (116)
|...||++||..+|--
T Consensus 5 yhg~isR~~Ae~lL~~ 20 (100)
T 1rja_A 5 FFGCISRSEAVRRLQA 20 (100)
T ss_dssp BCTTCCHHHHHHHHSS
T ss_pred ccCCCCHHHHHHHHhc
Confidence 4678999999999964
No 86
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=20.76 E-value=48 Score=21.02 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=13.0
Q ss_pred hcCCCCHHHHHHhhC
Q 033572 48 ASKMMAEPEARQILG 62 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILg 62 (116)
|...||++||..+|-
T Consensus 8 yhg~isR~~Ae~lL~ 22 (105)
T 1nrv_A 8 FHGRISREESHRIIK 22 (105)
T ss_dssp BCTTCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 567899999999994
No 87
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=20.70 E-value=47 Score=21.04 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=14.0
Q ss_pred hhcCCCCHHHHHHhhCC
Q 033572 47 RASKMMAEPEARQILGV 63 (116)
Q Consensus 47 ~~~~~Ms~~EA~~ILgv 63 (116)
-|...||++||..+|-=
T Consensus 11 Wyhg~isR~~Ae~lL~~ 27 (100)
T 1r1p_A 11 WFHEGLSRHQAENLLMG 27 (100)
T ss_dssp TSCTTCCHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHhcC
Confidence 35778999999999954
No 88
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction, peptide complex, complex (proto-oncogene/early protein); HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Probab=20.48 E-value=47 Score=20.96 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=12.9
Q ss_pred hcCCCCHHHHHHhhC
Q 033572 48 ASKMMAEPEARQILG 62 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILg 62 (116)
|...||++||..+|-
T Consensus 8 yhg~isR~~Ae~lL~ 22 (106)
T 1aot_F 8 YFGKLGRKDAERQLL 22 (106)
T ss_dssp CCBSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHh
Confidence 567899999999983
No 89
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=20.30 E-value=92 Score=21.41 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHhhCCCCCCCHHH
Q 033572 49 SKMMAEPEARQILGVTEQSSWEE 71 (116)
Q Consensus 49 ~~~Ms~~EA~~ILgv~~~~~~~~ 71 (116)
-+++|.+|=++++||..+.++++
T Consensus 126 i~gkt~eeir~~f~I~~d~t~eE 148 (159)
T 2ast_A 126 IKGKTPEEIRKTFNIKNDFTEEE 148 (159)
T ss_dssp HSSCCHHHHHHHTTCCCCSCTTH
T ss_pred HcCCCHHHHHHHcCCCCCCCHHH
Confidence 46799999999999998866544
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=25.51 E-value=22 Score=22.71 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHh
Q 033572 67 SSWEEILKKYDNLFEQN 83 (116)
Q Consensus 67 ~~~~~I~~~~~~L~~~N 83 (116)
-++++|..+|+.||.+-
T Consensus 48 ks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 48 KNPNQVSERFQQLMKLF 64 (70)
Confidence 46799999999999875
No 91
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}
Probab=20.07 E-value=22 Score=22.04 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred hcCCCCHHHHHHhhCCCCCCC
Q 033572 48 ASKMMAEPEARQILGVTEQSS 68 (116)
Q Consensus 48 ~~~~Ms~~EA~~ILgv~~~~~ 68 (116)
|...|++.+|..+|++....+
T Consensus 67 ~~~~~~r~~ae~lL~~k~~~~ 87 (90)
T 3reb_B 67 GGGRHRRRQAERMSQIKRLLS 87 (90)
T ss_dssp ---------------------
T ss_pred cccCcCHHHHHHHHhHHhhhc
Confidence 788999999999999987544
No 92
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=20.02 E-value=1.3e+02 Score=16.82 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 033572 1 MAARIIAQLIVMGSGI-MARAVVQAYRQAL 29 (116)
Q Consensus 1 M~~r~i~~l~v~~~~~-~gRA~~~Ayrq~~ 29 (116)
|+-|++.|+++--.-+ +.--|+.||.|+.
T Consensus 1 MvE~lL~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 1 MVEPLLCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchhhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 6667777775432222 2345788999974
Done!