BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033573
(116 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/103 (99%), Positives = 102/103 (99%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP
Sbjct: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA K
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEK 103
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 85/103 (82%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK+ +GKG + +K EV+ PVEDR GKRKA LKA+ SS KR K K KKDPNKPKRPP
Sbjct: 1 MKIAKGKGTARTEKKEVLLPVEDRKIGKRKAALKANESSKKRVKKEKITKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL+ A K
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEK 103
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 88/103 (85%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL++A K
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADK 103
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 150 bits (380), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 88/103 (85%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL++A K
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADK 103
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/102 (78%), Positives = 88/102 (86%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 25 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 84
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL++A+
Sbjct: 85 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEAV 126
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 83/103 (80%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + +K EV PVEDR GKRKA LKA+ SS KR K KKDP+KPKRPP
Sbjct: 1 MKTAKGKGAARTEKKEVSLPVEDRKIGKRKAALKATESSKKRAAKEKITKKDPDKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
S+FFVFLEEFRK+YKQEHPN+KAVSAVGKAGGEKWKS++ A K
Sbjct: 61 SSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAAEK 103
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/103 (70%), Positives = 83/103 (80%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + +K EV PVEDR GKRKA LKA+ SS KR K KKDP+KPKRPP
Sbjct: 1 MKTAKGKGAARTEKKEVSLPVEDRKIGKRKAALKATESSKKRAAKEKITKKDPDKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
S+FFVFLEEFRK+YKQEHPN+KAVSAVGKAGGEKWKS++ A K
Sbjct: 61 SSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAAEK 103
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 87/103 (84%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKV +GK KKD+ EV+KPVEDR GKR A LK +++S K TK K AKKDPN+PKRPP
Sbjct: 1 MKVGKGKETAKKDRKEVLKPVEDRKLGKRSAALKPNKNSKKVTKKDKPAKKDPNRPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLE+FRKVYKQEHPNVKAVSAVGKAGGEKWKS+++A K
Sbjct: 61 SAFFVFLEDFRKVYKQEHPNVKAVSAVGKAGGEKWKSMSNAEK 103
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/111 (63%), Positives = 85/111 (76%), Gaps = 1/111 (0%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK ++GKG + K E +KPV+DR GKRKAV+KA + + TK AKKDPNKPKRPP
Sbjct: 1 MKGSKGKGTSRVSK-EALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPP 59
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
SAFFVFLEEFRK YK+E+PNVKAVSAVGKAGGEKWKSL+ A+ + +K
Sbjct: 60 SAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAVSIVVYYIKI 110
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 82/103 (79%), Gaps = 1/103 (0%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK ++GKG + K E +KPV+DR GKRKAV+KA + + TK AKKDPNKPKRPP
Sbjct: 1 MKGSKGKGTSRVSK-EALKPVDDRKVGKRKAVVKADKGIKRPTKKDLKAKKDPNKPKRPP 59
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRK YK+E+PNVKAVSAVGKAGGEKWKSL+ A K
Sbjct: 60 SAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAEK 102
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/86 (77%), Positives = 72/86 (83%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MKVT+GK A +KDK E +KPVEDR GKRKA LKA +S+ K K K AKKDPNKPKRPP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSA 86
SAFFVFLEEFRKVYKQEHPNVKAVSA
Sbjct: 61 SAFFVFLEEFRKVYKQEHPNVKAVSA 86
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 84/101 (83%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA ++D E +KP EDR GKRKA +KA +SS + T K AKKDPNKPKRPP
Sbjct: 1 MKAAKGKGAARRDTKEALKPAEDRKIGKRKAAVKAEKSSKRATTKDKKAKKDPNKPKRPP 60
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
SAFFVFLEEFRKV+K+E+PNVKAVSAVGKAGGE+WKSL++A
Sbjct: 61 SAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEA 101
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 81/103 (78%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A++++ + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-ETLKPVDDRKVGKRKAP--AAKATKRETRKEKRAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLE+FR+ +K+E+PNVKAVSAVGKAGG+KWKS++ A K
Sbjct: 58 SAFFVFLEDFRQTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + K E +KPV+DR GKRKA K RSS K K AKKDPNKPKRPP
Sbjct: 1 MKNAKGKGAARASK-ESLKPVDDRKVGKRKASGKPGRSSA--PKKEKKAKKDPNKPKRPP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRK +K E+PNVKAVS VGKAGGEKWKSL+ A K
Sbjct: 58 SAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEK 100
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 79/103 (76%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A +++ + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKATKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ A K
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ A K
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ A K
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ A K
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEK 100
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 1/103 (0%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK ++G GA K K+ +KP +DR GKRKA RSS + K K AKKDPNKPKRPP
Sbjct: 1 MKNSKGTGAAKASKD-ALKPADDRKVGKRKAAAAVDRSSKLKAKREKKAKKDPNKPKRPP 59
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVFLEEFRK +K+E+P+V +V+AVGKAGG KWKS++ A K
Sbjct: 60 SAFFVFLEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSAEK 102
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
Query: 3 VTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSA 62
+T+GKG K + + +KPV+DR GKRKA K + + + K AKKDPNKPKRPPSA
Sbjct: 1 MTKGKGTAKTSR-DALKPVDDRKVGKRKAAAKPEKVPKTKKE--KKAKKDPNKPKRPPSA 57
Query: 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
FFVFLE+FRK +K E+PNVKAVSAVGKAGGEKWKSLT A K
Sbjct: 58 FFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEK 98
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 76/103 (73%), Gaps = 3/103 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GKGA + K E +KPV+DR GKRKA K +S + K K AKKDPNKPKRPP
Sbjct: 1 MKTAKGKGAARPSK-ESLKPVDDRKVGKRKASGKPEKS--RAPKKEKKAKKDPNKPKRPP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAF VFLEEFRK +K E+P VKAVS VGKAGGEKWKSL+ A K
Sbjct: 58 SAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEK 100
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 76/101 (75%), Gaps = 3/101 (2%)
Query: 3 VTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSA 62
+T+GKG K + + +KPV+DR GKRKA K + + + K AKKDPNKPKRPPSA
Sbjct: 1 MTKGKGTAKTSR-DALKPVDDRKVGKRKAAAKPEKVPKTKKE--KKAKKDPNKPKRPPSA 57
Query: 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
FFVFLE+FRK +K E+PNVKAVSAVGKAGG KWKSLT A K
Sbjct: 58 FFVFLEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKAEK 98
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 73/96 (76%)
Query: 8 GAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFL 67
G K + + +K VE++ GKRK K S+ S+++ K + A KDPNKPKRP SAFFVF+
Sbjct: 4 GKAKNEASSTLKKVEEKPIGKRKTAAKESKVSSRQEKKGRKAAKDPNKPKRPASAFFVFM 63
Query: 68 EEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
E+FRK YK+++PNVK+VS VGKAGG+KWKS+++A K
Sbjct: 64 EDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEADK 99
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 64/79 (81%), Gaps = 6/79 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+E+FRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIKKEHWMVKFVIC 114
KS+TDAI+ ++V V C
Sbjct: 68 KSMTDAIR--GYVVVAVPC 84
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/79 (64%), Positives = 63/79 (79%), Gaps = 6/79 (7%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+E+FRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIKKEHWMVKFVIC 114
KS+TDAI ++V V C
Sbjct: 68 KSMTDAIG--GYVVVAVPC 84
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSLIGKAGGDKW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 26 AGKRKAVLKASRSS-NKR-TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA 83
GK K ++S+ S NK+ TK K A KDPNKPKRP SAFFVF+EEFR+ YK+EHPN K+
Sbjct: 3 GGKSKTETRSSKLSVNKKPTKGGKGAAKDPNKPKRPASAFFVFMEEFRETYKKEHPNNKS 62
Query: 84 VSAVGKAGGEKWKSLTDAIK 103
V+AVGKAGG+KWKSL+D+ K
Sbjct: 63 VAAVGKAGGQKWKSLSDSEK 82
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+E+FRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIK 103
KS+TDA K
Sbjct: 68 KSMTDADK 75
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPNKPKRPPSAFFVF+EEFRK YK++HPNVK VS +GKAGG+KW
Sbjct: 12 SRLSVRKTK----AEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK K + KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+AVGKAGG+KWK LTDA
Sbjct: 23 TKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKQLTDAE 82
Query: 103 K 103
K
Sbjct: 83 K 83
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 3 VTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSA 62
+T+GK A K K EV+KPV+DR GKRKA +K + + + K K KPKRPPSA
Sbjct: 1 MTKGKKAGKTSK-EVLKPVDDRKVGKRKAAVKPDKGTAGKAKKAKKDPN---KPKRPPSA 56
Query: 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
FFVFLE+FRK +K E+PNVK VSAVGKAGGEKWKSLT A K
Sbjct: 57 FFVFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKAEK 97
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 51/58 (87%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+K K+A KDPNKPKRPPSAFFVF+EEFRK YK++HPN K+V+ VGKAGG+KWK L+D
Sbjct: 23 SKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSD 80
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 78/116 (67%), Gaps = 8/116 (6%)
Query: 1 MKVTRGK---GAV-KKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKP 56
MK +GK GAV K+D E V V+D+ KRK +K + R KDPN P
Sbjct: 1 MKEAKGKKGVGAVAKRDVKEKVTKVQDKDIKKRKGPVKEPKG---RKAKSAKKAKDPNAP 57
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112
KRP +AFF+FL EFR+V+K+E+PNVK V+AVGKAGGEKWKS+++A +K+ +M K V
Sbjct: 58 KRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEA-EKQPYMQKAV 112
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK +KDPNKPKRPP+AFFVF+EEFRK YK++HPNVK VS +GKAGG+ W
Sbjct: 12 SRLSVRKTK----VEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK +KDPNKPKRPP+AFFVF+EEFRK YK++HPNVK VS +GKAGG+ W
Sbjct: 32 SRLSVRKTK----VEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMW 87
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 88 KSLSDAEK 95
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK +KDPNKPKRPP+AFFVF+EEFRK YK++HPNVK VS +GKAGG+ W
Sbjct: 12 SRLSVRKTK----VEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT A
Sbjct: 23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAE 82
Query: 103 K 103
K
Sbjct: 83 K 83
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK K A KDPNKPKRP SAFFVF+E+FRK YK+ HPN K+V+AVGKAGG+KWKSL++A
Sbjct: 26 TKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAE 85
Query: 103 K 103
K
Sbjct: 86 K 86
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK K A KDPNKPKRP SAFFVF+E+FRK YK+ HPN K+V+AVGKAGG+KWKSL++A
Sbjct: 26 TKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAE 85
Query: 103 K 103
K
Sbjct: 86 K 86
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 51/60 (85%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K + A KDPNKPKRPPSAFFVF+ EFR+ +K+EHPN K+V+ VGKAGGEKWKSL+DA K
Sbjct: 25 KQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAEK 84
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK +KDPNKPKRPP+ FFVF+EEFRK YK++HPNVK VS +GKAGG+ W
Sbjct: 12 SRLSVRKTK----VEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRPPSAFFVFL+EFRK YKQ +PN +VSAVGKAGGEKW++L+DA K
Sbjct: 42 DPNKPKRPPSAFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDAEK 93
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/58 (72%), Positives = 49/58 (84%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL+D+
Sbjct: 23 KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDS 80
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 51/63 (80%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL+D
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
Query: 101 AIK 103
+ K
Sbjct: 80 SEK 82
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%), Gaps = 4/97 (4%)
Query: 16 EVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYK 75
E V V+D+ KRK +K +++ + KDPN PKRPP+AFF+FL EFR+V+K
Sbjct: 16 ERVPKVQDKDIKKRKGAVKETKAKKPKGG---KKLKDPNAPKRPPTAFFIFLNEFREVFK 72
Query: 76 QEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112
+E+PNVK V+AVGKAGGEKWKS+++A +K+ +M K V
Sbjct: 73 RENPNVKGVTAVGKAGGEKWKSMSEA-EKQPFMTKAV 108
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 51/63 (80%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL+D
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
Query: 101 AIK 103
+ K
Sbjct: 80 SEK 82
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 52/63 (82%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K K A KDPNKPKRP SAFFVF+E+FR+ YK+EHP K+V+AVGKAGGEKWKSL+D
Sbjct: 22 KPAKGGKGAAKDPNKPKRPSSAFFVFMEDFRETYKKEHPKNKSVAAVGKAGGEKWKSLSD 81
Query: 101 AIK 103
+ K
Sbjct: 82 SEK 84
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 48/52 (92%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFRK YK+EHPN K+V+AVGKAGG+KWKS++DA K
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEK 85
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 49/55 (89%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP+ KAVSAVGKA G KWK+++DA K
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEK 91
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 50/60 (83%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K K A KDPNKPKRPPSAFFVF+ EFR+ YK+EHP K+V+ VGKAGG+KWKSL+DA K
Sbjct: 25 KQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVGKAGGDKWKSLSDAEK 84
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 56/68 (82%), Gaps = 4/68 (5%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR S ++TK A+KDPN+PKRPPSAFFVF+E FRK YK++HP+VK VS VGKAGG +W
Sbjct: 12 SRLSVRKTK----AEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVKQVSVVGKAGGAEW 67
Query: 96 KSLTDAIK 103
KSL+DA K
Sbjct: 68 KSLSDAEK 75
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
KDPN PKRPP+AFF+FL EFR+V+K+E+PNVK V+AVGKAGGEKWKS+++A +K+ +M K
Sbjct: 7 KDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEA-EKQPFMTK 65
Query: 111 FV 112
V
Sbjct: 66 AV 67
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 79/116 (68%), Gaps = 8/116 (6%)
Query: 1 MKVTRGK---GAV-KKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKP 56
MK +GK GAV K+D E V V+D+ KRK +K + ++ KDPN P
Sbjct: 1 MKEAKGKKGVGAVAKRDVKEKVTKVQDKDIKKRKGPVKEPKGGKAKSA---KKAKDPNAP 57
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112
KRP +AFF+FL EFR+V+K+E+PNVK V+AVGKAGGEKWKS+++A +K+ +M K V
Sbjct: 58 KRPATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEA-EKQPYMQKAV 112
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 51/63 (80%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL+D
Sbjct: 541 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 600
Query: 101 AIK 103
+ K
Sbjct: 601 SEK 603
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 49/57 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VGKA G+KWKSL+D+ K
Sbjct: 406 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEK 462
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 48/53 (90%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDPNKPKRPPSAFFVF+ EFR+ YK+EHPN K+V+ VGKAGG++WKS++DA K
Sbjct: 31 KDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVVGKAGGDRWKSMSDADK 83
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 48/55 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAVSAVGKA G KWK+++DA K
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEK 91
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
+S+ K K A KDPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGG+KWK
Sbjct: 20 KSTTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWK 79
Query: 97 SLTDAIKKEH 106
SL++A K+ +
Sbjct: 80 SLSEAEKRPY 89
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 76/99 (76%), Gaps = 4/99 (4%)
Query: 5 RGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFF 64
R K AV+K E +KPV+DR GKRKA A + K K AKKDPNKPKRPPSAFF
Sbjct: 52 RSKAAVRK---ETLKPVDDRKVGKRKAA-AAPKVKKPAAKKDKKAKKDPNKPKRPPSAFF 107
Query: 65 VFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
VFLEEFR+ +K+E+PN+KAVSAVGKAGGEKWKSLTDA K
Sbjct: 108 VFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEK 146
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
+L A NKR K+ K DPN+PKRPP+AFFV+LEEFRK +KQ+HP+VK V+AVGKA
Sbjct: 25 LLSAKEKPNKRQAKPKAVK-DPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKAC 83
Query: 92 GEKWKSLTDAIK 103
G+KWK +++A K
Sbjct: 84 GDKWKEMSEAEK 95
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 48/52 (92%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+E+FR+ YK++HPN K+V+AVGKAGGEKWKSL+D+ K
Sbjct: 34 DPNKPKRPASAFFVFMEDFRQTYKKDHPNNKSVAAVGKAGGEKWKSLSDSEK 85
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 49/55 (89%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGG+KWKSL++A K
Sbjct: 37 AAKDPNKPKRPASAFFVFMEEFREQYKREHPKNKSVAAVGKAGGDKWKSLSEAEK 91
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGGEKWKSL+DA K
Sbjct: 35 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGEKWKSLSDAEK 86
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K K A KDPNKPK PPSAFFVF+ EFR+ +K+EHPN K+V+ VGKAGG+KWKSL+DA K
Sbjct: 25 KQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDKWKSLSDAEK 84
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRPPSAFFVF+EEFRK YK++HPN K+V+AVGKAGG+ WK L++A K
Sbjct: 32 DPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAAVGKAGGDAWKKLSEAEK 83
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFRK YK+ +P+ ++VSAVGKAGGEKWKS+TDA K
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKEANPDNRSVSAVGKAGGEKWKSMTDAEK 85
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + A KDPNKPKRP SAFFVF+EEFRK YK++HP K+VS VGKAGG+KWKSL++
Sbjct: 32 KKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSE 91
Query: 101 AIK 103
A K
Sbjct: 92 AEK 94
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + A KDPNKPKRP SAFFVF+EEFRK YK++HP K+VS VGKAGG+KWKSL++
Sbjct: 30 KKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSE 89
Query: 101 AIK 103
A K
Sbjct: 90 AEK 92
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + A KDPNKPKRP SAFFVF+EEFRK YK++HP K+VS VGKAGG+KWKSL++
Sbjct: 32 KKTAKKEKAVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSE 91
Query: 101 AIK 103
A K
Sbjct: 92 AEK 94
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 49/55 (89%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGG+KWKSL++A K
Sbjct: 32 AAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEAEK 86
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 50/57 (87%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K+A KDPNKPKRP SAFFVF+E+FR+ +K+EHP K+V+AVGKA G+KWKSL+DA K
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKEHPKNKSVAAVGKAAGDKWKSLSDAEK 85
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFRK + +E+PN KAVSAVGKA G+KWKS++DA K
Sbjct: 35 DPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEK 86
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 46/55 (83%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRPPSAFFVF+EEFRK + ++HP KAVSAVGKA G KWK ++DA K
Sbjct: 26 AAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEK 80
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFRK YK++HP+ K+VS VGKAGG+KWKS+++A K
Sbjct: 40 DPNKPKRPASAFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEK 91
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K K A KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE WKS+++ K
Sbjct: 25 KQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDK 84
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRPPSAFFVF+E+FRK++ +E+P KAVSAVGKA G KWKS+++A K
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEDFRKIFNKENPENKAVSAVGKAAGAKWKSMSEAEK 91
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFR+ YK++HP K+V+AVGKAGG+KWKSL++A K
Sbjct: 31 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGDKWKSLSEAEK 82
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGG+KWKSL+ A K
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEK 90
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 48/53 (90%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDPNKPKRPPSAFFVF+E+FRK +K+++P+ KAVSAVGKA G KWKSL++A K
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEK 92
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGG+KWKSL+ A K
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEK 90
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 48/53 (90%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDPNKPKRPPSAFFVF+E+FRK +K+++P+ KAVSAVGKA G KWKSL++A K
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEK 92
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella moellendorffii]
Length = 134
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 45/49 (91%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN+PK+P +AFF+FLEEFR+ YK++HP+VK V+A+GKAGG+ WKSL+D
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSD 80
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Query: 21 VEDRAAGKRKAVLKASRSSNKRTKNVKSAKK-----DPNKPKRPPSAFFVFLEEFRKVYK 75
VE + K+ A K S SS +TK ++ KK DPN PKRPP+AFF+F+++FRK YK
Sbjct: 71 VEKQTQSKKPAEKKRSASSEPKTKKSRTEKKGKKDKDPNAPKRPPTAFFIFMDDFRKSYK 130
Query: 76 QEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+ +P+ K V V K GGEKWKS+TD KK +
Sbjct: 131 EANPDSKGVKEVAKEGGEKWKSMTDEEKKPY 161
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella moellendorffii]
Length = 123
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 45/49 (91%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN+PK+P +AFF+FLEEFR+ YK++HP+VK V+A+GKAGG+ WKSL+D
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLSD 66
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 46/50 (92%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSE 89
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella moellendorffii]
Length = 156
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 45/53 (84%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN+PKRP +AFFVFLEE+RK +K +HPN+K V+AVGKAGG+ WK LT+ KK
Sbjct: 51 DPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKK 103
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
A+KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++
Sbjct: 39 AEKDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 49/55 (89%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKR PSAFFVF+E+FRK +K+++P K+V+AVGKAGGE+WKS++DA K
Sbjct: 3 AGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDAEK 57
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 45/55 (81%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNK KRPPSAFFVF+EEFRK + ++HP KAVSAVGKA G KWK ++DA K
Sbjct: 38 AAKDPNKLKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEK 92
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
+KDPNKPKRPP+ FFVF+E FRK YK+ HP K+V+ VGKAGGEKWKSL+++ K
Sbjct: 5 GEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSESEK 59
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella moellendorffii]
Length = 83
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 46/55 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN+PKRP +AFFVFLEE+RK +K +HPN+K V+AVGKAGG+ WK LT+ KK +
Sbjct: 7 DPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLTEEEKKPY 61
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 48/55 (87%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
A KDPNKPKRPPSAFFVF+E FRK +K ++P K+++AVGKAGGE+WKS++D+ K
Sbjct: 26 AGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMSDSEK 80
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 47/52 (90%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRP SAFFVF+EEFR+ YK+EHP K+V+AVGKAGG++WKS++++ K
Sbjct: 34 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDRWKSMSESEK 85
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella moellendorffii]
Length = 84
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K A KDPN PKRPP+AFFVFLE FR+ YK++HP+VK V+AVGKA G+KW ++++ K
Sbjct: 4 KKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMSESEK 60
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 49/57 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VGKA G+KWKSL+D+ K
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEK 85
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 46/50 (92%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSE 50
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 53/61 (86%), Gaps = 1/61 (1%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK K AK DPNKPKRPPSAFFVF+ EFR+ +K+E+P+ K+V+ VGKAGG++WK+L+DA+
Sbjct: 24 TKQSKKAK-DPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDAV 82
Query: 103 K 103
+
Sbjct: 83 R 83
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++
Sbjct: 41 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++
Sbjct: 41 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 64/103 (62%), Gaps = 17/103 (16%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL+++I
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESI 87
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++
Sbjct: 59 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 107
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK K AK DPNKPKRPPSAFFVF+ EFR+ +K+E+P+ K+V+ VGKAGG++WK+L+DA
Sbjct: 24 TKQSKKAK-DPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDAD 82
Query: 103 K 103
K
Sbjct: 83 K 83
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++
Sbjct: 54 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 102
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 49/57 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VGKA G+KWKSL+D+ K
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEK 85
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 49/57 (85%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VGKA G+KWKSL+D+ K
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEK 85
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++
Sbjct: 69 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 117
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 45/57 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WKS+TD K
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKSMTDEDK 82
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++ A K
Sbjct: 42 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEK 93
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WKS+TD K
Sbjct: 29 KKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKSMTDEDK 82
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 18/105 (17%)
Query: 1 MKVTRGKGAVKKDKNEVVKP--VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKR 58
MK + KGA K D VK E AA RK A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKG----------------KAGKDPNKPKR 44
Query: 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSLT+A K
Sbjct: 45 APSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADK 89
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 63/103 (61%), Gaps = 14/103 (13%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK + KGA K D VK + G K K + A KDPNKPKR P
Sbjct: 1 MKGAKSKGAAKPDAKLAVK-----SKGAEKPAAKGRKGK---------AGKDPNKPKRAP 46
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
SAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSLT+A K
Sbjct: 47 SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADK 89
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++ A K
Sbjct: 63 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEK 114
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 46/60 (76%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K+ KS KKD N PKRP + FFVF+EEFRK YK++ P+ KA VGK GGEKWKS++DA K
Sbjct: 27 KSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQFPDAKAGPVVGKVGGEKWKSMSDAEK 86
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPP+AFF+F+++FRK YK+ +P+ K VS V K GGEKWKS+TD KK +
Sbjct: 94 KDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKSMTDEEKKPY 149
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 54/66 (81%), Gaps = 3/66 (4%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
+S+++ KNV KD + PKRP SAFF+F++EFRK +K+++P+ KAVSAVGKAGGEKWKS
Sbjct: 33 ASSRKKKNVS---KDTDAPKRPASAFFIFMDEFRKYFKEKYPDNKAVSAVGKAGGEKWKS 89
Query: 98 LTDAIK 103
L++ K
Sbjct: 90 LSETDK 95
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 17/107 (15%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 12 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 55
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL+++ K +
Sbjct: 56 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPY 102
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WK++TD K
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDK 82
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WK++TD K
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDK 82
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 17/104 (16%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL+++ K
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDK 88
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKRPPSAFFVF+EEFRK +K+++PN K VS VGKA G+KWKS++ A K
Sbjct: 18 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAAEK 69
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDPNKPKRPPSAFFVF+E+FRK +K+ + + KAVSAVGKA G KWKS+T+A K
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTEAEK 92
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WK++TD K
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDK 82
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 54/71 (76%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
L + + K+T+ A KDPNKPKR SAFFVF+E FRK +K+++P K+V+AVGKAGG
Sbjct: 17 LAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKEKNPKNKSVAAVGKAGG 76
Query: 93 EKWKSLTDAIK 103
EKWKS++DA K
Sbjct: 77 EKWKSMSDAEK 87
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium distachyon]
Length = 160
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 64/105 (60%), Gaps = 18/105 (17%)
Query: 1 MKVTRGKGAVKKDKNEVVKP--VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKR 58
MK + KGAVK D VK E AA RK A KDPNKPKR
Sbjct: 1 MKGAKSKGAVKADTKLAVKSKGAEKPAAKGRKG----------------KAGKDPNKPKR 44
Query: 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
PSAFFVF++EFRK +K+++P K+V+AVGKA GE+WK+L+++ K
Sbjct: 45 APSAFFVFMDEFRKEFKEKNPKNKSVAAVGKAAGERWKTLSESDK 89
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 49/58 (84%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
A KDPNKPKR PSAFFVFL+EFRK +K+++P K+V+AV KAGG +WKS++DA K+ +
Sbjct: 35 AAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENKSVAAVTKAGGARWKSMSDADKEPY 92
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 17/107 (15%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL+++ K +
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPY 91
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WKS+T+ K
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKSMTEEDK 82
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 4/74 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KA R+ ++ K V+ DPN+PKRPP+AFFVFL++FRK +K+ +P K V VGK GGE
Sbjct: 84 KAKRAKTEKAKKVE----DPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGE 139
Query: 94 KWKSLTDAIKKEHW 107
KW+++TD KK +
Sbjct: 140 KWRAMTDEEKKPYL 153
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 30 KAVLKASR-SSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K V A R SS KR K A K DP PK+PP+AFF F+E+FRK+YKQE P+VK++ +
Sbjct: 13 KTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEI 72
Query: 88 GKAGGEKWKSLT 99
GKA GEKW ++T
Sbjct: 73 GKACGEKWNTMT 84
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 30 KAVLKASR-SSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K V A R SS KR K A K DP PK+PP+AFF F+E+FRK+YKQE P+VK++ +
Sbjct: 13 KTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEI 72
Query: 88 GKAGGEKWKSLT 99
GKA GEKW ++T
Sbjct: 73 GKACGEKWNTMT 84
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
DPN PKRPP+AFFVFL++FRK +K+ +P+ K V VGK GEKW+S+TD KK +
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYL 154
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 44/51 (86%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PKRPPSAFFVF+E+FRK++K+++P+ K VSAVGKA G+KWKSLT A K +
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAAEKAPY 52
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 10/95 (10%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
G GA+ + VV E + +++LKA+ + KR K S K PKRPPSAFFV
Sbjct: 18 GDGAIDHVRGSVVTGKE-----RTRSMLKAAGGAGKRKKAAASGK-----PKRPPSAFFV 67
Query: 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
F+ EFR+ Y+ HP+ K+V+AV KA GEKW+++++
Sbjct: 68 FMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSE 102
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 45/52 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AVGKA GE+WKSL+++ K
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEK 89
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 50/64 (78%), Gaps = 2/64 (3%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KRT+ K+ +DPN+PK+P +AFFVF+++FRK YK+ +P+VK + VGK GG KWK+++D
Sbjct: 95 KRTREKKA--RDPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMSD 152
Query: 101 AIKK 104
KK
Sbjct: 153 EDKK 156
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 45/52 (86%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AVGKA GE+WKSL+++ K
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEK 89
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 44/56 (78%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+DPN PKRPP+AFF+F+++FRK YK+ +P+ K V V K GG +WKS+TD KK++
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMTDEEKKQY 155
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
DPN PKRPP+AFF FL++FRK +K+ +P+ K V VGK GEKW+S+TD KK +
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYL 154
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 44/53 (83%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDPNKPKRPPSAFFVF+E+FRK +K+++PN K VS VGKA KWK+++ A K
Sbjct: 38 KDPNKPKRPPSAFFVFMEDFRKQFKEKNPNNKQVSVVGKACWGKWKTMSAAEK 90
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
K KRPP+AFF+F+ +FRK YK EHP+ K+VSAV K GGE+WKS++D KK
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKK 140
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
K KRPP+AFF+F+ +FRK YK EHP+ K+VSAV K GGE+WKS++D KK
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDEDKK 140
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
LKA+ + KR K S KPKRPPSAFFVF+ EFR+ Y+ HP+ K+V+AV KA G
Sbjct: 15 LKAAGGAGKRKKAAAS-----GKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAG 69
Query: 93 EKWKSLTD 100
EKW+++++
Sbjct: 70 EKWRAMSE 77
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 62/90 (68%), Gaps = 10/90 (11%)
Query: 30 KAVLKASR-SSNKRTKNVK---------SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
K+ KASR +++KR K +K + K D NKPK+PP+AFF FL++FRK +++++P
Sbjct: 37 KSAAKASRFNTDKRAKTIKKPNSKQKKKNDKFDVNKPKKPPTAFFYFLDDFRKEFQEQNP 96
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
+VK + VGKA GEKWK++T K +++ +
Sbjct: 97 DVKTMRDVGKACGEKWKTMTYEEKVQYYDI 126
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
A KD + PKRPPSA+F+F+E FRK +K +P+VK V+A KAGGEKW S+++
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSE 181
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
A KD + PKRPPSA+F+F+E FRK +K +P+VK V+A KAGGEKW S+++
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMSE 237
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 14/99 (14%)
Query: 25 AAGKRKAVL--KASRSSNKRTKNVKSAKK------------DPNKPKRPPSAFFVFLEEF 70
+A RK VL K+S + + KS KK D NKPK+PP+AFF FLE+F
Sbjct: 25 SASSRKLVLRVKSSEQMKRSAQQTKSTKKPKAKQKTSKQRIDANKPKKPPTAFFYFLEDF 84
Query: 71 RKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
RK ++ ++P+VK + +GK+ GEKWK++T K +++ +
Sbjct: 85 RKEFQVQNPDVKTMRDIGKSCGEKWKTMTYEEKVQYYDI 123
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 58 RPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
RPPSAFFVF+ EFR+ Y+ EHPN K+V+ V KA GEKW+S++DA K
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDADK 81
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
LKA+ + KR K S KPKRPPSAFFVF+ EFR+ Y+ HP K+V+AV KA G
Sbjct: 15 LKAAGGAGKRKKAAAS-----GKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAG 69
Query: 93 EKWKSLTD 100
EKW+++++
Sbjct: 70 EKWRAMSE 77
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KPKRPPSAFFVF+ EFR+ Y+ +HP K+V+AV KA GEKW+S+++ K+
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQ 82
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KPKRPPSAFFVF+ EFR+ Y+ +HP K+V+AV KA GEKW+S+++ K+
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQ 82
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 56/76 (73%), Gaps = 4/76 (5%)
Query: 37 RSSNK---RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
RS NK +TK +S + D KPK+PP+AFF FLE+FRK +++++P+VK++ +GKA GE
Sbjct: 67 RSGNKAKAKTKK-RSQRVDSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGE 125
Query: 94 KWKSLTDAIKKEHWMV 109
KWK++T K +++ +
Sbjct: 126 KWKTMTYEEKVQYYDI 141
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+K R+ KR + AK D KPK+PP+AFF FLE+FRK +++++P+VK++ +GKA G
Sbjct: 87 VKDKRAKPKRISKRQIAKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACG 146
Query: 93 EKWKSLT 99
EKWK +T
Sbjct: 147 EKWKMMT 153
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AK DP+KPKRP S FF+F+ +FR +++E+P+ K VS VGKA GEKW+S++D
Sbjct: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSD 57
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
SR K + K D KPK+PP+AFF FLE+FRK +K ++P+VK++ +GKA GEKW
Sbjct: 44 SRDITKAVQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKW 103
Query: 96 KSLTDAIKKEHWMV 109
K++T K +++ +
Sbjct: 104 KTMTFEEKVQYYDI 117
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 36 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
SRS++ R K V KDPN+PK+PPS FFVFL++FRK + +P+ K+V VG+A
Sbjct: 10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAA 69
Query: 92 GEKWKSLTD 100
G+KWK++T+
Sbjct: 70 GKKWKTMTE 78
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 40/48 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
D +PK+PP+AFF F+E+FRK YK+E+P+VK++ VGKA GEKW ++T
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 92
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 40/48 (83%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
D +PK+PP+AFF F+E+FRK YK+E+P+VK++ VGKA GEKW ++T
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 92
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 46/58 (79%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
D KPK+PP+AFF FLE+FRK +++++P+VK++ +GKA GEKWK++T K +++ +
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDI 113
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 38 SSNKRTKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
SS KR K A K D PK+PP+AFF F+E+FRKVYKQE P+VK++ +GKA GEKW
Sbjct: 6 SSPKRKSRPKPAGKGDRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWN 65
Query: 97 SL 98
++
Sbjct: 66 TM 67
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 40/46 (86%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
NKPKR P+AFF+F+++FRK YK+ HP+ K+V++V K GGE+W+S+T
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVAKEGGERWRSMT 147
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KPKRPPSAFFVF+ EFR+ Y+ HP K+V+ V KA GEKW++++D K+
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMSDQEKQ 81
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KPKRPPSAFFVF+ EFR+ Y+ HP K+V+ V KA GEKW++++D K+
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQ 81
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KPKRPPSAFFVF+ EFR+ Y+ HP K+V+ V KA GEKW++++D K+
Sbjct: 31 GKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQ 81
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 46/58 (79%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
D KP++PP+AFF FLE+FRK +++++P+V+++ +GKA GEKWK++T K +++ +
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMTYEEKVQYYDI 115
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KPKRPPSAFF F+ EFR+ Y+ HP K+V+ V KA GEKW++++D K+
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQ 81
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
K KRPP+AFF+F+++FR +K HP+ K V+AVGKA GEKW+S+T+ KK
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMTEEEKK 149
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
N KRPP+AFF+F+++FR +K HP+ K VSAVGKA G KWK++TD KK +
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMTDEEKKPYL 152
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 46/52 (88%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPNKPKR PSAFFVFLEEFRK YK++HP+ K+V+AVGKA G KW+S++D+ K
Sbjct: 37 DPNKPKRAPSAFFVFLEEFRKEYKEKHPDNKSVAAVGKAAGAKWRSMSDSDK 88
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S++++ + K K KR P+AFF+F+++FRK +K HP+ K+V+ V K GGE+WKS
Sbjct: 74 SADRKKSSAKGGGNKDAKRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKS 133
Query: 98 LTDAIKK 104
+TD KK
Sbjct: 134 MTDEEKK 140
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
K KR P+AFF+F+++FRK +K HP+ K+V+ V K GGEKWKS+TD KK
Sbjct: 96 KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATVAKEGGEKWKSMTDEEKK 145
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K K A KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+A+
Sbjct: 25 KQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAL 68
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S++++ + K K KR P+AFF+F+++FRK +K HP+ K+V+ V K GGE+WKS
Sbjct: 16 SADRKKSSAKGGGNKDAKRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKS 75
Query: 98 LTDAIKK 104
+TD KK
Sbjct: 76 MTDEEKK 82
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A K GGEKWKSLT+
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLTE 158
Query: 101 AIKK 104
KK
Sbjct: 159 EEKK 162
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + K + NKPKRP +AFF+F+ +FRK +K EH N K GGEKWKSLT+
Sbjct: 85 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLTE 143
Query: 101 AIKK 104
KK
Sbjct: 144 EEKK 147
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A K GGEKWKSLT+
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMNDFRKTFKTEHNGSLAKDA-AKIGGEKWKSLTE 158
Query: 101 AIKK 104
KK
Sbjct: 159 EEKK 162
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KPKR P+ FF FL EFR Y ++HP K V+AV KA GEKW+S++D
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSD 67
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KPKR P+ FF FL EFR Y ++HP K V+AV KA GEKW+S++D K
Sbjct: 26 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMSDEEK 74
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
L A+ + KR K + S K PKRPPSAFFVF+ EFR+ Y+ +HP K++ V K G
Sbjct: 136 LWAAGIAGKRKKVIMSGK-----PKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVSKTAG 190
Query: 93 EKWKSLTD 100
EKW + +D
Sbjct: 191 EKWHAKSD 198
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
PK+P +AFF FL++FRK Y++E+P+VK++ +GK GEKWK++T
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMT 106
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DP +PK+PP+AFF F+E+FR +K E+P+VK++ +G+A GEKW +
Sbjct: 39 DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIGRACGEKWNKM 85
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAV-SAVGKAGGEKWKSLT 99
PK+PP+AFF FLE+FRK Y++E+P VK++ +GK GEKWK++T
Sbjct: 64 PKKPPTAFFFFLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMT 108
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K KKDPN PKRPPS FF+F + R K +HP++ + V K GE+W +LTDA K+ +
Sbjct: 84 KGRKKDPNAPKRPPSGFFIFCADHRPKIKAQHPSL-GIGDVAKKLGEQWNNLTDATKQPY 142
Query: 107 WM 108
+
Sbjct: 143 LI 144
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A K GGEKW SLT+
Sbjct: 97 KKTNDEKKSSSTSNKPKRPLTAFFIFMNDFRKTFKTEHNGSFAKDA-AKIGGEKWMSLTE 155
Query: 101 AIKK 104
KK
Sbjct: 156 DEKK 159
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KPKR + FF FL EFR Y ++HPN K V+AV KA GEKW++++D K ++
Sbjct: 23 GKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQY 75
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 41/52 (78%), Gaps = 4/52 (7%)
Query: 52 DPNKPKRPPSAFF----VFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
D KPK+ PSAFF +F+E+FRK +++++P++K++ +GKA GEKWK++T
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMT 92
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KPKR + FF FL EFR Y ++HPN K V+AV KA GEKW++++D K ++
Sbjct: 23 GKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQY 75
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K K AKKDPN PKRPPS FFVF E R K +HP+ + V K GE W +LTD+ K
Sbjct: 83 KRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHPSF-GIGDVAKKLGEAWNNLTDSSK 141
Query: 104 KEH 106
+ +
Sbjct: 142 QPY 144
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K A KDPN PKRPPS FFVF E R K +HPN + V K GE W +LTD+ K+ +
Sbjct: 86 KKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWNNLTDSNKQPY 144
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K A KDPN PKRPPS FFVF E R K +HPN + V K GE W +LTD+ K+ +
Sbjct: 86 KKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWNNLTDSNKQPY 144
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K A KDPN PKRPPS FFVF E R K +HPN + V K GE W +LTD+ K+ +
Sbjct: 86 KKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWNNLTDSNKQPY 144
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
+++ L+ SR +R + K+ +K DPN+PKRPPSA+F+FL +FRK Y + K +
Sbjct: 236 EKEPFLELSRRDRERWQKDKALEKKPRDPNRPKRPPSAYFLFLADFRKNYPGKSDPAKEI 295
Query: 85 SAVGKAGGEKWKSLTDAIKKEHW 107
+ K GE W SL+DA K ++
Sbjct: 296 T---KKAGEAWNSLSDAEKTPYY 315
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWM 108
KKDPN PKRPPS FF+F E R K ++P++ + V K GE W LTDA K+ M
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEHRPQIKAQYPSL-GIGDVAKKLGEMWNGLTDANKQPFLM 143
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV 84
+++ L+ SR +R + K+ +K DPN+PKRPPSA+F+FL +FRK Y + K +
Sbjct: 99 EKEPFLELSRRDRERWQKDKALEKKPRDPNRPKRPPSAYFLFLADFRKNYPGKSDPAKEI 158
Query: 85 SAVGKAGGEKWKSLTDAIKKEHW 107
+ K GE W SL+DA K ++
Sbjct: 159 T---KKAGEAWNSLSDAEKTPYY 178
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAV-SAVGKAGGEKWKSLT 99
PK+P +AFF FL++FRK Y++E+P+VK++ +GK GEKWK++T
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMT 107
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFFVF E+R K EHPN+ + + K GE W
Sbjct: 91 KKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNL-TIGEIAKKLGELW 135
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFFVF E+R K EHPN+ + + K GE W
Sbjct: 91 KKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNL-TIGEIAKKLGELW 135
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PKRPPSAFFVF E+R KQ++P + ++ K GE W LT + K+ +
Sbjct: 91 RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLTQSEKQPY 146
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K KKDPN PKRP S FF+F + R K +HP++ + V K GE+W +LTDA K+ +
Sbjct: 84 KGRKKDPNAPKRPSSGFFIFCADHRPKIKAQHPSL-GIGDVAKKLGEQWNNLTDATKQPY 142
Query: 107 WM 108
+
Sbjct: 143 LI 144
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica KU27]
Length = 111
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PN+PKRPP+ +F++L E R K+EHP+ K V+ + K E+WK+L + KKE+
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEY 75
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 114
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PN+PKRPP+ +F++L E R K+EHP+++ + + K E+WK+L + KKE+
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKALGEEEKKEY 78
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PKRPPSAFFVF E+R KQ++P + ++ K GE W L+ + K+ +
Sbjct: 91 RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLSQSEKQPY 146
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PKRPPSAFFVF E+R KQ++P + ++ K GE W L+ + K+ +
Sbjct: 91 RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGL-SIGDCAKKLGEMWSKLSQSEKQPY 146
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 4 KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 59
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
KKDPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ +K+ +M
Sbjct: 101 KKDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIEDVVKKLGEMWNNLSDS-EKQPYMT 158
Query: 110 K 110
K
Sbjct: 159 K 159
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Query: 41 KRTKNVKSAK-------KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KR +N+ K KDPN PKRPPSAFF+F E+R +K EHP + ++ V K GE
Sbjct: 286 KRNENLHPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKFKGEHPGL-SIGDVAKKLGE 344
Query: 94 KWKS 97
W +
Sbjct: 345 MWNN 348
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
+ K KKDPN PKRPPS FF+F EF K +P + ++ V K GE W +L+D+ K+
Sbjct: 79 SAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI-SIGDVAKKLGEMWNNLSDSKKQ 137
Query: 105 EH 106
+
Sbjct: 138 LY 139
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ VGK GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVGKKPGEMW 133
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + T A K+H+
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN-TAADDKQHY 144
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 36 SRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
S+ + K TK K+ A KDPNKPKR P+AFFV + EFRK +K+++P +K+V+AV
Sbjct: 25 SKGAEKPTKGRKAKAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAAV 77
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 35/40 (87%)
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
P+AFF FLE+FRK +++++P+VK++ VGKA GEKWK++T
Sbjct: 81 PTAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMT 120
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar SAW760]
Length = 111
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PN+PK+P SA+F++L E R K+EHP++K + + K E+WK+L + KKE+
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKALGEEEKKEY 75
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PKRPPSAFFVF E+R KQ+ P + ++ K GE W L+ + K+ +
Sbjct: 94 RKDPNAPKRPPSAFFVFCSEYRPSVKQQFPGL-SIGDCAKKLGEMWSKLSQSEKQPY 149
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
DPNKPKRP SA+F++L E R+ K E+P+ V+ + K G++WK +TD + E VK
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENPDA-GVTDIAKLAGQRWKEVTDKTRWEGLAVK 603
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PK PPS FF+F EFR K +P + ++ V K GE W SL+D+ K+ +
Sbjct: 253 KKDPNAPKTPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNSLSDSEKQPY 308
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
DPN PKRPP+ FFVFL++FRK +K+ +P+ K VGK W + AI + V+F
Sbjct: 99 DPNMPKRPPTTFFVFLDDFRKSFKEANPDSKDAKRVGKEA--VWGMVIVAIGFSYGFVEF 156
Query: 112 VICTT 116
+ +
Sbjct: 157 EVASA 161
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPSAFF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 157
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPSAFF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 142
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
+ AKK + P+RP SA+ F+ EFR+ +K +HP V VS VG A GE W+SLT
Sbjct: 11 RRAKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLT 63
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 216
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 40 NKRTKNVKSAK----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N+ K+ SAK KDPN PKRPPS FF+F EF K +P + ++ V K GE W
Sbjct: 71 NQEMKDYGSAKGGKKKDPNAPKRPPSGFFLFFSEFCSKIKSTNPGI-SIGDVAKKLGEMW 129
Query: 96 KSLTDAIKKEH 106
+L+D+ K+ +
Sbjct: 130 NNLSDSKKQLY 140
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+++
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSDKQQY 142
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ +K+ +M K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDS-EKQPYMTK 145
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 178
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ +K+ +M K
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDS-EKQPYMTK 186
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 194
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
++ + +N R K K D K K+P S FF FLE+FRK ++ +P+VK+ +GKA +
Sbjct: 45 RSVQQTNSRKKLKAKQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAK 104
Query: 94 KWKSLTDAIKKEHWMV 109
KWK++T K +++ +
Sbjct: 105 KWKTMTYEEKAQYFDI 120
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPS FF+F EFR K +P + ++ + K GE W +L+D K+ +
Sbjct: 88 KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDIAKKLGEMWNNLSDGEKQPY 142
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 178
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
PN+PKRP + +F++L E R K+EHP+ K V+ + K E+WK+L + KKE+
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDAK-VTEIAKIASEQWKALGEEEKKEY 75
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
+++ K + V+ KKDPN PKR SA+ +F E R ++E+PN+ VGK GE+WK
Sbjct: 5 KTTRKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWK 63
Query: 97 SLTD 100
+L+D
Sbjct: 64 ALSD 67
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 213
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 130
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
PP+AFF+FL+EFRK +K+ +P+ K V V K GEKWK++TD KK
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMTDEEKK 148
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + +V V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SVGDVAKKLGEMWNNLSDSEKQPY 142
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 571 GI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS 118892]
Length = 102
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
++ K + V+ KKDPN PKR SA+ +F E R ++E+PN+ VGK GE+WK+
Sbjct: 7 TARKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWKA 65
Query: 98 LTD 100
L+D
Sbjct: 66 LSD 68
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
DPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + T A K+H+
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEIWNN-TAADDKQHY 144
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 157
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
KKDPN PKRPPS FF+F EF K +P + ++ V K GE WK+L+D+
Sbjct: 35 KKDPNAPKRPPSGFFLFCSEFHPKIKFTNPGI-SIGDVAKKLGEMWKNLSDS 85
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS 118893]
Length = 102
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 37 RSSNKRTK-NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
+S+ ++TK V+ KKDPN PKR SA+ +F E R ++E+P++ VGK GE+W
Sbjct: 5 KSTTRKTKRGVEKKKKDPNAPKRGLSAYMIFANEQRASVREENPSI-TFGQVGKVLGERW 63
Query: 96 KSLTDAIKKEH 106
K+LTD +K +
Sbjct: 64 KALTDKQRKPY 74
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 144
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 142
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 162
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+ V+ KKDPN PKR SA+ +F E R ++E+PN+ VGK GE+WK+L+D
Sbjct: 14 RGVEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWKALSD 69
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 141
>gi|71024155|ref|XP_762307.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
gi|46101812|gb|EAK87045.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
Length = 534
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KA++ +K K + +DP+ PKRPPSA+ +F E R+ +++HP + +GK E
Sbjct: 275 KAAKKMSKLQKRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKV-SE 333
Query: 94 KWKSLTD 100
WK+LTD
Sbjct: 334 AWKALTD 340
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 142
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPY 142
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|357513707|ref|XP_003627142.1| HMG1/2-like protein [Medicago truncatula]
gi|355521164|gb|AET01618.1| HMG1/2-like protein [Medicago truncatula]
Length = 248
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KD N KR P+ FFVF++EFRK +K+ + + K V VGK GEKW+
Sbjct: 201 KDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDGEKWRQ 247
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + + V K GE W +L+D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-TIGDVAKKLGEMWNNLSDSEKQPY 142
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 51 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 94
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFF+F E+R K EHP + ++ K GE W
Sbjct: 3 KKDPNAPKRPPSAFFLFCSEYRPKIKSEHPGL-SIGDTAKKLGEMW 47
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 162
>gi|449706835|gb|EMD46595.1| high mobility group (HMG) box domain containing protein, partial
[Entamoeba histolytica KU27]
Length = 76
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
PN+PKRPP+ +F++L E R K+EHP+++ + + K E+WK+L + KK
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKALGEEEKK 76
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R KR V +D NKPKRP +AF +F+ +FRK + P V+A+ K GGE+W+
Sbjct: 275 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWR 333
Query: 97 SLTDAIKKEH 106
S+++ K+ +
Sbjct: 334 SMSEEDKRPY 343
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDGEKQPY 142
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPS FF+F EF K +P + + V K GE WK+L D+ K+ +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVAKKLGEMWKNLNDSEKQPY 141
>gi|444721192|gb|ELW61941.1| High mobility group protein B1 [Tupaia chinensis]
Length = 300
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|395821450|ref|XP_003784053.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 221
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNVPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGEVAKKLGEMW 133
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + + K+
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTSSEDKQ 142
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 92 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 135
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
A1163]
Length = 104
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKA 65
Query: 98 LTDAIKK 104
L+D+ ++
Sbjct: 66 LSDSERR 72
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 148
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPSAFF+F EFR K EHP + + V K GE W + K+ +
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHPGL-TIGEVAKKLGELWNNTNSEDKQPY 148
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 142
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 142
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 41 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 84
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + +V V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVAKKLGEMW 133
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 142
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPSAFF+F EFR K+E P + ++ V K GE W ++ K+ +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPY 143
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPSAFF+F EFR K+E P + ++ V K GE W ++ K+ +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKRLGEMWNKISSEEKQPY 143
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPSAFFVF E R K +HP + + + K GE W LT K +
Sbjct: 88 KDPNAPKRPPSAFFVFCSEHRPKVKADHPGL-GIGEIAKRLGEMWGLLTPETKSPY 142
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
V+ KKDPN PKR SA+ +F E R ++E+PN+ VGK GE+WK+L+D
Sbjct: 15 VEKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWKALSD 68
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 139
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya fischeri
NRRL 181]
Length = 104
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKA 65
Query: 98 LTDAIKKEH 106
L+D ++ +
Sbjct: 66 LSDTDRRPY 74
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 115 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 158
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 142
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DP KP+R S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 GKGDPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 231 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 278
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 134
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 121
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 121
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 104 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 147
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|183212219|gb|ACC54772.1| high mobility group box 3 [Xenopus borealis]
Length = 152
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + + V K GE W +L D+ K+ +
Sbjct: 97 DPNAPKRPPSGFFLFCSEFRPNIKSTNPGI-TIGDVAKKLGEMWNNLGDSEKQPY 150
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 98
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K P + + V K GE W +L+D+ K+ +
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKPGI-TIGDVAKKLGEMWNNLSDSEKQPY 161
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPP FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 93
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 140
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGNVAKKLGEMW 133
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R KR V +D NKPKRP +AF +F+ +FRK + P V+A+ K GGE+W+
Sbjct: 260 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWR 318
Query: 97 SLTDAIKKEH 106
S+++ K+ +
Sbjct: 319 SMSEEDKRPY 328
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 96 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 139
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 39 SNKRTKNVKSA---KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
++K+T+ K A KKDPN PKR SA+ F++++R K +HP+V + GK GEKW
Sbjct: 11 ASKKTETTKRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHPDV-SFGETGKLLGEKW 69
Query: 96 KSLTDAIKK 104
K+++ A KK
Sbjct: 70 KAMSAAEKK 78
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVPKKLGEMWNNLNDSEKQPY 142
>gi|350409390|ref|XP_003488719.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus impatiens]
Length = 736
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KD NKPKRPP+AF ++L R+ K E+P + AV+ + K GGE W+ L D
Sbjct: 543 EKDANKPKRPPTAFMIWLNSARERIKAENPGI-AVTEIAKKGGEMWRELKD 592
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKRPPSAFFVF + R K EHP + ++ + K GE W T
Sbjct: 90 KKDPNAPKRPPSAFFVFCSDHRARIKGEHPGI-SIGDIAKKLGELWSKQT 138
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
KDPNKP+ S++ F++ R+ +K++HP S K E+WK+++
Sbjct: 4 KDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMS 53
>gi|340713595|ref|XP_003395326.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus terrestris]
Length = 735
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KD NKPKRPP+AF ++L R+ K E+P + AV+ + K GGE W+ L D
Sbjct: 543 EKDANKPKRPPTAFMIWLNSARERIKAENPGI-AVTEIAKKGGEMWRELKD 592
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + + V K GE W
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-PIGDVAKKLGEMW 127
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 127
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KR + FF FL EFR Y ++HP +K V V KA GEKW+S++D K
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEK 66
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KR + FF FL EFR Y ++HP +K V V KA GEKW+S++D K
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEK 66
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+ A R S KRT KKDPN PKR SA+ F E R + + E+P+V + VG+ G
Sbjct: 1 MAAPRESKKRTTR---RKKDPNAPKRALSAYMFFANETRDIVRAENPDV-SFGQVGRILG 56
Query: 93 EKWKSLT 99
EKWK+LT
Sbjct: 57 EKWKALT 63
>gi|449681405|ref|XP_002159252.2| PREDICTED: FACT complex subunit SSRP1-like [Hydra magnipapillata]
Length = 774
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
D N PKRP SAF +++ E R+ K ++P + A + + K GGE+WK+LTD K E+
Sbjct: 543 DENAPKRPMSAFMLYMNEVREKIKADNPGI-AFTDIAKKGGEQWKTLTDKTKWEN 596
>gi|365759088|gb|EHN00901.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 185
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 11/101 (10%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
G + + ++ KP+ + ++ +LKAS+ + R + +K PKRP SA+F+
Sbjct: 5 GYSLLSRSFHQSTKPLFNLSS----ILLKASKRTQLRNELIKQG------PKRPTSAYFL 54
Query: 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
FL++ R + +E+P ++ S + K GEKW++L IK ++
Sbjct: 55 FLQDHRSQFAKENPTLRP-SEISKIAGEKWQTLKSDIKDKY 94
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KR K + KKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L+D
Sbjct: 8 KRAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKVLGERWKALSD 66
Query: 101 AIKKEH 106
+K +
Sbjct: 67 TQRKPY 72
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPSAFF+F EFR K E P + + V K GE W S + K+ +
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKGESPGL-TIGDVAKRLGEMWNSTSAEDKQPY 143
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFFFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KR + FF FL EFR Y ++HP +K V V KA GEKW+S++D K
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEK 66
>gi|401838192|gb|EJT41931.1| ABF2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 185
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 57/101 (56%), Gaps = 11/101 (10%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
G + + ++ KP+ + ++ +LKAS+ + R + +K PKRP SA+F+
Sbjct: 5 GYSLLSRSFHQSTKPLFNLSS----ILLKASKRTQLRNELIKQG------PKRPTSAYFL 54
Query: 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
FL++ R + +E+P ++ S + K GEKW++L IK ++
Sbjct: 55 FLQDHRSQFAKENPTLRP-SEISKIAGEKWQTLKSDIKDKY 94
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAIKKEH 106
KKDPN P+RP S FF+F EFR K +P + G GE WK+L D+ K+ H
Sbjct: 87 KKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLNDSEKQPH 146
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KR + FF FL EFR Y ++HP +K V V KA GEKW+S++D K
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMSDEEK 66
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R KR V +D NKPKRP +AF +F+ +FRK + P V+A+ K GGE+W+
Sbjct: 239 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWR 297
Query: 97 SLTDAIKKEH 106
S+++ K+ +
Sbjct: 298 SMSEEDKRPY 307
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W +
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN 47
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R KR V +D NKPKRP +AF +F+ +FRK + P V+A+ K GGE+W+
Sbjct: 239 RERYKREMAVYKPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWR 297
Query: 97 SLTDAIKKEH 106
S+++ K+ +
Sbjct: 298 SMSEEDKRPY 307
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K EHP + + K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCGDFRPKVKSEHPGL-TIGDTAKKLGEMWNS 134
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + + K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS-TIGDIAKKLGEMW 133
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K EHP + + K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCGDFRPKVKSEHPGL-TIGDTAKKLGEMWNS 134
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + +V V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVAKKLGQMW 133
>gi|401624308|gb|EJS42370.1| abf2p [Saccharomyces arboricola H-6]
Length = 183
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 31 AVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKA 90
A+LKAS+ + R + +K PKRP SA+F+FL++ R + +E+P ++ + + K
Sbjct: 24 ALLKASKRTQLRNELIKQG------PKRPTSAYFLFLQDHRSQFVKENPTLRP-AEISKV 76
Query: 91 GGEKWKSLTDAIKKEH 106
GEKW++L IK ++
Sbjct: 77 AGEKWQTLDAGIKDKY 92
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
Length = 104
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S+ +TK V+ KKDPN PKR SA+ F + R ++E+P + + VGK GE+WK+
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGERWKA 65
Query: 98 LTDAIKK 104
L+D+ ++
Sbjct: 66 LSDSERR 72
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDAAKKLGEMW 133
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K EHP + + K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEFRPKIKGEHPGS-TIGDIAKKLGEMW 133
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E+R K EHP + +V V K GE W
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHPGL-SVGDVTKKLGEMW 133
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNK--RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + ++ R K V++ K KDPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKRKQLKRAKMTKDRKSRKKTVEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 571 GI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KKDPN PKRPPSAFFVF EFR KQE P ++ K G W T K+
Sbjct: 91 KKDPNAPKRPPSAFFVFSAEFRPTVKQEFPGC-SIGQCAKKLGIMWGQQTPTQKQ 144
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KDPN PKRPPSAFF F E+R K EHP + ++ V + GE W + + K+
Sbjct: 513 KDPNAPKRPPSAFFWFCSEYRPKIKGEHPGL-SIGDVAEKLGEMWSNTAEGDKQ 565
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K+E P + ++ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFIFCSEFRPKVKEETPGL-SIGDVAKKLGEMW 121
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGQMW 133
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 2 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 46
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGQMW 133
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
+DPN PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 EDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K+E P + ++ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFIFCAEFRPKVKEETPGL-SIGDVAKKLGEMW 121
>gi|110766132|ref|XP_001120264.1| PREDICTED: FACT complex subunit Ssrp1 [Apis mellifera]
Length = 728
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KD NKPKRPP+AF ++L R+ K E+P + AV+ + K GGE W+ L D
Sbjct: 543 EKDTNKPKRPPTAFMMWLNSARERIKAENPGI-AVTEIAKKGGEMWRELKD 592
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKD NKPKRP +AF ++L + R+ K+++P +K V+ + K GGE WK L D
Sbjct: 554 KKDSNKPKRPTTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKELKD 603
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 136
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS 4309]
Length = 101
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
KKDPN PKR SA+ F E R + K E+PN+ VGK GEKWK+LT A +KE +
Sbjct: 14 KKDPNAPKRGLSAYMFFANENRDIVKAENPNI-TFGQVGKVLGEKWKALT-AEEKEPYEA 71
Query: 110 K 110
K
Sbjct: 72 K 72
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKVETPGL-SIGDVAKKLGEKWNNLT 136
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ + K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SMGDIAKKLGELW 133
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKVETPGL-SIGDVAKKLGEKWNNLT 136
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS 4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS 4417]
Length = 93
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R + + E+P+V + +G+ GEKW++LTD
Sbjct: 15 KKDPNAPKRAMSAYMFFANETRDIVRAENPDV-SFGQIGRLLGEKWRALTD 64
>gi|255715687|ref|XP_002554125.1| KLTH0E14850p [Lachancea thermotolerans]
gi|238935507|emb|CAR23688.1| KLTH0E14850p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+ A R + KRT KKDPN PKR SA+ F E R + + E+P V VG+ G
Sbjct: 1 MSAPREAKKRTTR---RKKDPNAPKRALSAYMFFANENRDIVRAENPGV-TFGQVGRLLG 56
Query: 93 EKWKSLTDAIKKEH 106
+KWK+LTD K+ +
Sbjct: 57 DKWKALTDEEKQPY 70
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+ R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K G
Sbjct: 525 MAKDRKSRKKPTEVKKGK-DPNAPKRPMSAYMLWLNASREKIKLDHPGI-SITDLSKKAG 582
Query: 93 EKWKSLTDAIKKEHW 107
E WK ++ KKE W
Sbjct: 583 EIWKGMSKE-KKEEW 596
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPSAFF+F ++R K E+P + ++ + K GE W S + +K+ +
Sbjct: 89 KDPNAPKRPPSAFFIFCGDYRPKIKGENPGL-SIGDIAKKLGEMWNSSSAEVKQPY 143
>gi|441669023|ref|XP_004092092.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
Length = 204
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKR-------TKNVKSAKKDPNKPKRPPSAFFVFL 67
+E+ K + + GK +A+ KA ++ +R +K K KDPN PKRPP AFF+F
Sbjct: 46 SEMWKTIFAKEKGKFEAMAKADKAHYEREMKTYIPSKGEKKKFKDPNAPKRPPLAFFLFC 105
Query: 68 EEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
E+R K EHP + ++ V K E W + A K+
Sbjct: 106 SEYRPKIKGEHPGL-SIDDVVKKLAEMWNNTAAADKQ 141
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRPPSAFF+F EFR K E+P + + K GE W S T
Sbjct: 89 KDPNAPKRPPSAFFLFCAEFRPKVKSENPGL-TIGDTAKKLGEMWNSKT 136
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + ++ V K G+ W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGKMW 133
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
+KPKRP SAFFVF+ EFR+ Y+ +HP K+V+AV
Sbjct: 287 SKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAV 320
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFF++ E+R + E+P + + ++ K GE W
Sbjct: 90 KKDPNAPKRPPSAFFIYCAEYRSKVRAENPGL-TIGSIAKKLGEMW 134
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFF++ E+R + E+P + + ++ K GE W
Sbjct: 90 KKDPNAPKRPPSAFFIYCAEYRSKVRAENPGL-TIGSIAKKLGEMW 134
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+ K+EHP++ ++ V K GE W
Sbjct: 90 KDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL-SIGDVAKILGEMW 133
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 23 DRAAGKRKAVLKA----SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
DR KRK + +A R S K++ K K DPN PKRP SA+ ++L R+ K +H
Sbjct: 511 DREEKKRKQLKRAKMAKDRKSRKKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDH 569
Query: 79 PNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
P + +++ + K GE WK ++ KKE W
Sbjct: 570 PGI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDP+ PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPSAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKRPPSAFF+F +FR K ++P + + + K GE W T+
Sbjct: 93 KKDPNAPKRPPSAFFIFCADFRPQIKADNPGM-VIGTIAKRLGEMWGRQTN 142
>gi|346468357|gb|AEO34023.1| hypothetical protein [Amblyomma maculatum]
Length = 734
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
++D NKPKRPPSA+F++L E R K+++P+ +++ V K GE WK +TD K E V
Sbjct: 555 ERDANKPKRPPSAYFLWLAENRDKIKKDNPSF-SITDVTKRAGELWKEVTDKSKWEQQAV 613
Query: 110 K 110
+
Sbjct: 614 E 614
>gi|349804477|gb|AEQ17711.1| putative high mobility group protein-1 [Hymenochirus curtipes]
Length = 143
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KDPN PKRPPSAFF+F +FR K EHP + + V K GE W + D
Sbjct: 88 KDPNAPKRPPSAFFLFCSDFR--IKGEHPGL-TIGDVAKKLGEMWNNTVD 134
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +FR K EHP + + K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHPGS-TIGDIAKKLGEMW 132
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +FR K EHP + + K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFCSDFRPKIKGEHPGS-TIGDIAKKLGEMW 132
>gi|388857581|emb|CCF48730.1| related to NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 253
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+DP+ PKRPPSA+ +F E R+ +++HP + +GK E WK+LTD
Sbjct: 169 RDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKV-SEAWKALTD 217
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DP+KPK+P SA+FV+ +E R E N V +GK GE+WKS+TDA K
Sbjct: 325 DPSKPKQPMSAYFVYSQERRAALVAEKKN---VPEIGKITGEEWKSMTDAQK 373
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN+PK+P S+F +F +E RK +E P V S + KWK L+ KK
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGVNN-STINALISVKWKELSGTEKK 501
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L + K+ +
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNEGEKQPY 117
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KKDPN P+RPPS FF+F E R + K ++P++ + V K G W +L+D+ K+
Sbjct: 88 KKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL-GIGDVAKKLGGMWNNLSDSEKQ 141
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
K+ KDPN+PKRPPSAFF+F E+ K EHP + ++ + + GE W + K+
Sbjct: 85 TKNTFKDPNEPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDIAEKLGEMWNNTAADDKQP 143
Query: 106 H 106
H
Sbjct: 144 H 144
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KKDPN P+RPPS FF+F E R + K ++P++ + V K G W +L+D+ K+
Sbjct: 88 KKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL-GIGDVAKKLGGMWNNLSDSEKQ 141
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K +HP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGKHPGL-SIGDVAKKLGEMW 133
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+ K+EHP++ ++ V K GE W
Sbjct: 90 KDPNVPKRPPLAFFLFCSEYHPKIKEEHPDL-SIGDVAKKLGEMW 133
>gi|343427904|emb|CBQ71429.1| related to NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 252
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+DP+ PKRPPSA+ +F E R+ +++HP + +GK E WK+LTD
Sbjct: 168 RDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKV-SEAWKALTD 216
>gi|307204835|gb|EFN83393.1| FACT complex subunit Ssrp1 [Harpegnathos saltator]
Length = 737
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KD NKPKRPP+AF ++L R+ K ++P + AV+ + K GGE W+ L D
Sbjct: 543 EKDTNKPKRPPTAFMLWLNNARESIKADNPGI-AVTEIAKKGGEMWRELKD 592
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 363 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 422
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 423 GI-SITDLSKKAGEIWKGMSKE-KKEEW 448
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPS FF+F EF K +P + + V K E WK+L D+ K+ +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVAKKLSEMWKNLNDSEKQPY 141
>gi|409050062|gb|EKM59539.1| hypothetical protein PHACADRAFT_250106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 256
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 16 EVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYK 75
+++ P + GKRKA KR + K KDPN PKRPPS++ +F E R+ K
Sbjct: 62 QMLPPQAEPTGGKRKAR-GDDEGEGKRKRKTKP--KDPNAPKRPPSSYLLFQNEVRQELK 118
Query: 76 QEHPNV---KAVSAVGKAGGEKWKSLTD------AIKKEHWM 108
+HPN+ + ++ + KA G+ K D A+ K H++
Sbjct: 119 AKHPNIPNNELLAKIAKAWGDMPKEQKDRYESRHAVSKNHYL 160
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
DPN PKRPPSAFF+F EFR K E P + ++ V K GE W S
Sbjct: 91 DPNAPKRPPSAFFIFCSEFRPKVKGESPGL-SIGDVAKRLGEMWNS 135
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + + V K GE W
Sbjct: 105 KDPNAPKRPPSAFFLFCSEYRSKIKGEHPGL-SNGDVAKKLGEIW 148
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 69
>gi|407262070|ref|XP_003945989.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKRGEMW 133
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + V V K GE W
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-CVGDVAKKLGELW 134
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKRGEMW 133
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K EHP + ++ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNS 134
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K EHP + ++ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNS 134
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K EHP + ++ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNS 134
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K+E P + ++ V K GE W
Sbjct: 70 KDPNAPKRPPSAFFIFCAEYRPKVKEETPGL-SIGDVAKKLGEMW 113
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K E+P + ++ K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKIKSEYPGL-SIGDTAKKLGEMWNS 134
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K DPN PKRP S FF+F EF K +P + ++ V K GE WK+L D+ K+ +
Sbjct: 24 KNDPNAPKRPLSGFFLFCSEFHPKMKSTNPGI-SIGDVAKKLGEMWKNLNDSEKQPY 79
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F EFR K E P + + V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKGEAPGL-TIGEVAKRLGEMW 132
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K EHP + ++ K G W S
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNS 134
>gi|148668459|gb|EDL00778.1| mCG116117 [Mus musculus]
Length = 244
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL-SIGDVAKKRGEMW 133
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
AKKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 69
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L D
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKILGERWKALND 69
>gi|444706303|gb|ELW47646.1| Glycine/arginine-rich protein 1 [Tupaia chinensis]
Length = 485
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F E+R K EHP + ++ + K GE W S
Sbjct: 35 KDPNAPKRPPSAFFLFCSEYRPKIK-EHPGL-SIGDIAKKLGELWTS 79
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN KRPPS FF+F EF K +P + ++ V K GE W +L D+ K+ +
Sbjct: 87 KKDPNATKRPPSGFFLFCSEFHPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKR PS FF+F EFR K +P + ++ V K GE W +L+D+ K+ +
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNPGI-SIGDVAKKLGEMWNNLSDSEKQPY 639
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KD NKPKRP +AF ++L E R K ++P +K ++ + K GGE WK L D K W
Sbjct: 676 KDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGEMWKELKD---KSEW 728
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
AKKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 69
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN KRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 142
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFYSEYCPQIKGEHPGL-SIGDVAKKLGEMW 133
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 119 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMS- 176
Query: 101 AIKKEHW 107
KKE W
Sbjct: 177 KEKKEEW 183
>gi|449706836|gb|EMD46596.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 80
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
PN+PKRPP+ +F++L E R K+EHP+++ + + K E+WK
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWK 68
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride IMI
206040]
Length = 101
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L D
Sbjct: 16 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALND 68
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
KRKA KA ++++++ KKDPNKPKR SA+ F +++R K E+P+ V
Sbjct: 9 KRKAAEKADKATSRK------GKKDPNKPKRALSAYMFFSQDWRDRIKAENPDA-GFGEV 61
Query: 88 GKAGGEKWKSLTDAIKKEH 106
GK G KWK L + KK +
Sbjct: 62 GKLLGAKWKELDEEEKKPY 80
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KD NKPKRP +AF ++L E R K ++P +K ++ + K GGE WK L D K W
Sbjct: 548 KDENKPKRPSTAFMLWLNEMRDKIKADNPGIK-ITEIAKKGGEMWKELKD---KSEW 600
>gi|383859589|ref|XP_003705276.1| PREDICTED: FACT complex subunit Ssrp1-like [Megachile rotundata]
Length = 740
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
++D NKPKRPP+AF ++L R+ K ++P + AV+ + K GGE W+ L D
Sbjct: 543 ERDANKPKRPPTAFMIWLNSNREKIKADNPGI-AVTEIAKKGGEMWRELKD 592
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
D NKPKRP +AF ++L E R+ K+++P +K V+ + K GGE WK L D
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGIK-VTEIAKKGGEMWKELKD 604
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EHP + + V K GE W
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRSKIKGEHPGL-SNGDVAKKLGEIW 59
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAIKKEH 106
AKKDPN PKRP SAF F ++ R+ +++P +K+ ++ VGK GE W L+DA KK +
Sbjct: 221 AKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPY 279
>gi|380011419|ref|XP_003689803.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like
[Apis florea]
Length = 729
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
D NKPKRPP+AF ++L R+ K E+P + AV+ + K GGE W+ L D
Sbjct: 545 DANKPKRPPTAFMMWLNSARERIKAENPGI-AVTEIAKKGGEMWRELKD 592
>gi|196119855|gb|ACG69451.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 155
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 82
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAIKKEH 106
AKKDPN PKRP SAF F ++ R+ +++P +K+ ++ VGK GE W L+DA KK +
Sbjct: 13 AKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDAQKKPY 71
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
+KA + +K+T VK K DP+ P++P SA+ ++L R++ K EHP + +++ +
Sbjct: 520 KKAKMAKDPKGHKKTVEVKKGK-DPSVPEQPLSAYVLWLNASREMIKSEHPGI-SIANLS 577
Query: 89 KAGGEKWKSLTDAIKKE 105
K GE WK ++ +K+E
Sbjct: 578 KKAGEIWKGMSKTMKEE 594
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
K K DPN PKRP S FF+F EF K +P + ++ V K GE W +L D+ K+
Sbjct: 19 AKGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQP 77
Query: 106 H 106
+
Sbjct: 78 Y 78
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSK 588
Query: 101 AIKKEHW 107
KKE W
Sbjct: 589 E-KKEEW 594
>gi|50548527|ref|XP_501733.1| YALI0C11671p [Yarrowia lipolytica]
gi|74635076|sp|Q6CC79.1|NHP6_YARLI RecName: Full=Non-histone chromosomal protein 6
gi|49647600|emb|CAG82043.1| YALI0C11671p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPN PKR SA+ F + R + ++P + A VGKA GEKWK+LTDA K
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEK 71
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC 204091]
Length = 142
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV------KAVSAVGKAGGEKWKSLTDAI 102
AKKDPN PKRP SA+ F ++ R V K+E+P+V +++ +GK G KWK L +
Sbjct: 18 AKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVGHCESIGEIGKILGAKWKELPEDE 77
Query: 103 KKEH 106
+K +
Sbjct: 78 RKPY 81
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKR SA+ +F E R ++E+PN+ VGK GE+WK+L+D
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENPNI-TFGQVGKVLGERWKALSD 107
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KKDPN PK+P + +F+F +E R+ K + K+ S V K GE W SL+D KK
Sbjct: 9 KKDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLSDEQKK 63
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSK 588
Query: 101 AIKKEHW 107
KKE W
Sbjct: 589 E-KKEEW 594
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSK 588
Query: 101 AIKKEHW 107
KKE W
Sbjct: 589 E-KKEEW 594
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMV 109
KKD N PKRPPS FF+F EF K + + ++ V K GE W +L+D+ KK+ ++
Sbjct: 13 KKDSNAPKRPPSGFFLFFSEFHPKIKSSNHGI-SIRDVAKTLGEMWNNLSDS-KKQSYIT 70
Query: 110 K 110
K
Sbjct: 71 K 71
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
AKKDPN PKR SA+ F E R+ ++E+P V VGK GE+WK+L+D
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV-TFGQVGKILGERWKALSD 69
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
+KDPN PKRPPSAFF+F E R K +HP + ++ K GE W T
Sbjct: 87 RKDPNAPKRPPSAFFLFCSEHRPKIKSDHPGL-SIGDTAKKLGEMWSLQT 135
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN PKR SA+ F E R + K E+P+V + VG+ GEKWK++TD K+
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENPDV-SFGQVGRILGEKWKAMTDEDKQ 68
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
K K DPN PKRP S FF+F EF K +P + ++ V K GE W +L D+ K+
Sbjct: 7 AKGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQP 65
Query: 106 H 106
+
Sbjct: 66 Y 66
>gi|62362190|gb|AAX81532.1| amphiHMG1/2-like protein [Adineta ricciae]
Length = 142
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
+ K A KDPN PKRP SAFF+F ++ R K++ P++ +V + K G +WK ++D ++K
Sbjct: 7 SSKKASKDPNAPKRPLSAFFLFSQDERPDIKKKSPSL-SVGDISKEIGSRWKKVSDDVRK 65
Query: 105 EH 106
+
Sbjct: 66 RY 67
>gi|338712138|ref|XP_001497140.3| PREDICTED: FACT complex subunit SSRP1 [Equus caballus]
Length = 680
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+ R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K G
Sbjct: 525 MAKDRKSRKKPMEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAG 582
Query: 93 EKWKSLTDAIKK 104
E WK ++ K+
Sbjct: 583 EIWKGMSKEKKE 594
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGELW 121
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKRP S F VF+E FRK YK +P K V+A KAGGEKWK +T+
Sbjct: 107 DPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAAKAGGEKWKQMTE 155
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila ATCC
42464]
Length = 101
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K +KKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 15 KRSKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 67
>gi|297302803|ref|XP_001082943.2| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 169
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPS+FF+F E+R K EHP + V K GE W + K+ +
Sbjct: 50 KDPNVPKRPPSSFFLFCSEYRPKTKGEHPGL-PFDDVAKNLGETWNNTAAGDKQPY 104
>gi|427788863|gb|JAA59883.1| Putative nucleosome-binding factor spn pob3 subunit [Rhipicephalus
pulchellus]
Length = 734
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
++D NKPKRPPSA+F++L E R+ K+++P +++ V K GE WK +TD
Sbjct: 555 ERDANKPKRPPSAYFLWLAENREKIKKDNPGF-SITDVTKRAGELWKEVTD 604
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E+R K EHP + ++ V K G+ W
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGKMW 133
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHPGL-SIGDTAKKLGEMW 157
>gi|395856570|ref|XP_003800699.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 161
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 39 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 82
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 571 GI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|242781691|ref|XP_002479852.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781695|ref|XP_002479853.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781700|ref|XP_002479854.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218719999|gb|EED19418.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720000|gb|EED19419.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720001|gb|EED19420.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F E R+ + E+P + A A+G+ GE WK L+DA +K +
Sbjct: 19 KKDPNAPKRGLSAYMFFANENRERVRDENPGI-AFGALGRKLGELWKGLSDAERKPY 74
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 571 GI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAF +F E+R K EHP + + V K GE W
Sbjct: 39 KDPNAPKRPPSAFLLFCSEYRPKIKGEHPGL-FIGDVAKKLGEMW 82
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
DPN PKRPPS FF+F EFR K + + ++ V K GE W +L D+ KK+ ++ K
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNLGI-SIGDVAKKLGEMWNNLNDS-KKQPYITK 145
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGELW 133
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPSAFF+F E R K E P + ++ K GE W T K H
Sbjct: 90 KKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL-SIGDTAKKLGELWAEQTPKDKLPH 145
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DPNKP+ S++ F++ R+ +K++HP+ S K E+WKS++
Sbjct: 2 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMS 53
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PK PPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKTPPSAFFLFCSEYRPKIKGEHPGL-SIGDVVKKLGEMW 133
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRTPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
K V KKDPN PKR SA+ F E R + K E+PN +GK GEKWK+++
Sbjct: 33 KRVTRKKKDPNAPKRSMSAYMFFANENRDIVKSENPNA-TFGQLGKLLGEKWKNMS 87
>gi|212526742|ref|XP_002143528.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
gi|212526744|ref|XP_002143529.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
gi|210072926|gb|EEA27013.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
gi|210072927|gb|EEA27014.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
V+ KKDPN PKR SA+ F E R+ + E+P + A A+G+ GE WK L+D+ +K
Sbjct: 15 VEKRKKDPNAPKRGLSAYMFFANENRERVRDENPGI-AFGALGRKLGELWKGLSDSERKP 73
Query: 106 H 106
+
Sbjct: 74 Y 74
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KR+ + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKREQLKRAKMAKDRKSRRKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 571 GI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KD N PKRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 87 KDRNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 130
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 135
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN P RPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 16 KDPNAPNRPPSAFFLFCSEYHPEIKGEHPGL-SIGDVAKKLGEMW 59
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN KRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNALKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 21 VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
EDRA + + + ++ K K KDPN PKRPPSAFF+F E+ K EHP
Sbjct: 60 FEDRAKADKASYERDMKTDIPPKKETKKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPG 119
Query: 81 VKAVSAVGKAGGEKW 95
+ ++ V K GE W
Sbjct: 120 L-SIGDVAKRLGELW 133
>gi|323307721|gb|EGA60984.1| Abf2p [Saccharomyces cerevisiae FostersO]
Length = 124
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+E+P ++ + + K GEKW++L IK+++
Sbjct: 62 VKENPTLRP-AEISKIAGEKWQNLEADIKEKY 92
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHPGL-SIGDTAKKLGEMW 82
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFFVF + R K+E+P + ++ + K GE W + T
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENPGI-SIGDIAKKLGEFWSTQT 138
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLT 99
KDPNKP+ S++ F+ R+ +K++HP V + K E+WK+++
Sbjct: 3 KDPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMS 52
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPSAFF+F E R K E P + ++ K GE W T K H
Sbjct: 90 KKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL-SIGDTAKKLGELWAEQTPKDKLPH 145
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K DPNKP+ S++ F++ R+ +K++HP+ S K E+WKS++
Sbjct: 2 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMS 53
>gi|6323717|ref|NP_013788.1| Abf2p [Saccharomyces cerevisiae S288c]
gi|398988|sp|Q02486.1|ABF2_YEAST RecName: Full=ARS-binding factor 2, mitochondrial; Flags: Precursor
gi|763019|emb|CAA88797.1| Abf2p [Saccharomyces cerevisiae]
gi|2815294|emb|CAA11146.1| cisplatin-damaged DNA recognition protein CDRP1 [Saccharomyces
cerevisiae]
gi|45269826|gb|AAS56293.1| YMR072W [Saccharomyces cerevisiae]
gi|151946230|gb|EDN64461.1| ARS-binding factor [Saccharomyces cerevisiae YJM789]
gi|190408303|gb|EDV11568.1| ARS-binding factor 2, mitochondrial precursor [Saccharomyces
cerevisiae RM11-1a]
gi|207342356|gb|EDZ70142.1| YMR072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273496|gb|EEU08430.1| Abf2p [Saccharomyces cerevisiae JAY291]
gi|259148645|emb|CAY81890.1| Abf2p [Saccharomyces cerevisiae EC1118]
gi|285814075|tpg|DAA09970.1| TPA: Abf2p [Saccharomyces cerevisiae S288c]
gi|323303592|gb|EGA57383.1| Abf2p [Saccharomyces cerevisiae FostersB]
gi|323336275|gb|EGA77546.1| Abf2p [Saccharomyces cerevisiae Vin13]
gi|323347161|gb|EGA81436.1| Abf2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353057|gb|EGA85357.1| Abf2p [Saccharomyces cerevisiae VL3]
gi|349580353|dbj|GAA25513.1| K7_Abf2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763798|gb|EHN05324.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392297232|gb|EIW08332.1| Abf2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 183
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+E+P ++ + + K GEKW++L IK+++
Sbjct: 62 VKENPTLRP-AEISKIAGEKWQNLEADIKEKY 92
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K EHP + + V K GE W
Sbjct: 78 KDPNTPKRPPSAFFLFCSEYSPKIKGEHPGL-PIGDVTKKLGEMW 121
>gi|307180072|gb|EFN68140.1| FACT complex subunit Ssrp1 [Camponotus floridanus]
Length = 739
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KD NKPKRPP+AF ++L R+ K ++P + V+ + K GGE W+ L D
Sbjct: 543 EKDANKPKRPPTAFMLWLNSARESIKADNPGIN-VTEIAKKGGEMWRELKD 592
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KA++S + + + KKDPN PKR SA+ F E R ++E+P V + VGK GE
Sbjct: 3 KAAKSRSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENPGV-SFGQVGKILGE 61
Query: 94 KWKSLTD 100
+WK+L+D
Sbjct: 62 RWKALSD 68
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KD N PK PPS FF+F EFR K +P + ++ V K GE W +L+D K+ +
Sbjct: 88 KDSNAPKHPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPY 142
>gi|444727982|gb|ELW68448.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 27 GKRKAVLKASRSSNKRT--------KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEH 78
GK +A+ K ++ +KR K DPN PKRPPSAF +F E+R K EH
Sbjct: 46 GKFEAMAKVDKACDKREVKTYIPPKGETKEKFTDPNAPKRPPSAFSLFCSEYRPKIKGEH 105
Query: 79 PNVKAVSAVGKAGGEKW 95
P + ++ V K GE W
Sbjct: 106 PGL-SIGDVAKKLGEMW 121
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KDPN PKRPPSAFF+F E R K E+P + + K GE W S T
Sbjct: 89 KDPNAPKRPPSAFFLFCAELRPKVKSENPGL-TIGDTAKKLGEMWNSKT 136
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP+ PKRPPS FF+F E R K +P + +V V K GE W +L D+ K+ +
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI-SVGDVAKKLGEMWNNLNDSEKQPY 119
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
+ EFR +K+++PN K+V+AVGKA G KWKS+TDA K
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDAEK 37
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRP S FF+F EF K +P + ++ V K GE WK+L D+ K+ +
Sbjct: 26 DPNAPKRPLSGFFLFCSEFHPKMKSTNPGI-SIGDVAKKLGEMWKNLNDSEKQPY 79
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 493 RKKQVESKKGKDPNVPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSK 551
Query: 101 AIKKEHW 107
KKE W
Sbjct: 552 E-KKEEW 557
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KKDPN PKRPPSAFFVF + R K+++P + ++ + K GE W
Sbjct: 89 KKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGELW 133
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L +
Sbjct: 13 KKAKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALNE 68
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRSPSAFFLFCSEYCHKIKGEHPGL-SIGVVAKKLGEMW 133
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPNKPK+P +A+ ++L E R K++ P++K V+ V K GE WK++ + KK +
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDMK-VTEVAKKAGENWKAMGEEDKKPY 149
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
+TK VK +KDPN PKRP SA+ F +++R+ K E+P+V + +G+ G KWK L++
Sbjct: 23 KTKRVKK-EKDPNAPKRPLSAYMYFSQDWRERIKTENPDV-SFGEIGRLLGLKWKGLSEE 80
Query: 102 IKKEH 106
KK +
Sbjct: 81 EKKPY 85
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High
Mobility Group Protein B3
Length = 81
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
N PKRPPS FF+F EFR K +P + ++ V K GE W +L D+ K+ +
Sbjct: 8 NAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 59
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRP S FF+F EFR K +P + ++ V K G+ W +L+D+ K+ +
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNPGI-SIGDVAKKLGDMWNNLSDSEKQPY 142
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KD N PKR SA+F F+ +FRK +HP++ +V+ KA G WK+L+D +KK +
Sbjct: 200 KDENAPKRSMSAYFFFVSDFRK----KHPDL-SVTETSKAAGAAWKALSDDMKKPY 250
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K E P + ++ K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKIKSESPGL-SIGDTAKKLGEMWNS 134
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRLPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TDA K+ +
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKASGKMWSATTDAEKQPY 144
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKR PS FF+F EFR K +P + ++ V K G+ W +L+D+ K+ +
Sbjct: 90 KDPNAPKRRPSVFFLFCSEFRLKIKSTNPGI-SIGDVAKKLGDVWNNLSDSEKQPY 144
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPS FF+F + R K P + + V K GE W TD KK +
Sbjct: 94 KKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGL-TIGDVAKKLGELWNGCTDEEKKPY 149
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
K AK+DP KP+ S++ F++ R+ +K+++P+V S K E+WK+++
Sbjct: 6 TKMAKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMS 60
>gi|323332044|gb|EGA73455.1| Abf2p [Saccharomyces cerevisiae AWRI796]
Length = 139
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 11/92 (11%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP+ + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPLFNLAS----TLLKASKRTQLRNELIKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+E+P ++ + + K GEKW++L IK+++
Sbjct: 62 VKENPTLRP-AEISKIAGEKWQNLEADIKEKY 92
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
V+ KKDPN PKR SA+ F + R+ ++E+P + + VGK GEKWK+L++A ++
Sbjct: 15 VERKKKDPNAPKRGLSAYMFFANDNREKVREENPGI-SFGQVGKMLGEKWKALSEADRRP 73
Query: 106 H 106
+
Sbjct: 74 Y 74
>gi|67524855|ref|XP_660489.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|74597086|sp|Q5B995.1|NHP6_EMENI RecName: Full=Non-histone chromosomal protein 6
gi|40744280|gb|EAA63456.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|259486178|tpe|CBF83812.1| TPA: Non-histone chromosomal protein 6
[Source:UniProtKB/Swiss-Prot;Acc:Q5B995] [Aspergillus
nidulans FGSC A4]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F + R ++E+P + + VGK GEKWKSL+D +K +
Sbjct: 21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSDKERKPY 76
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V +G+ GE+WK+LT
Sbjct: 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDV-TFGQIGRLLGERWKALT 63
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKRPPS FF+F + R K P + + V K GE W TD KK +
Sbjct: 87 KKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGL-TIGDVAKKLGELWNGCTDEEKKPY 142
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL 8126]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 17 GKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 67
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K KKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L D
Sbjct: 17 KRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKILGERWKALND 69
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
KD V P +AAGKRK KDPN PKRPPSAFFVF E R
Sbjct: 73 KDMKGYVPPKGSKAAGKRK--------------------KDPNAPKRPPSAFFVFCAEHR 112
Query: 72 KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K ++P + + + K G W T K+ H
Sbjct: 113 GRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKQPH 146
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
KD V P +AAGKRK KDPN PKRPPSAFFVF E R
Sbjct: 73 KDMKGYVPPKGSKAAGKRK--------------------KDPNAPKRPPSAFFVFCAEHR 112
Query: 72 KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K ++P + + + K G W T K+ H
Sbjct: 113 GRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKQPH 146
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
Length = 94
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+ A R + KR+ KKDPN PKR SA+ F E R + + E+P+V VGK G
Sbjct: 1 MAAPRETKKRSTR---RKKDPNAPKRALSAYMFFANETRDIVRSENPDV-TFGQVGKILG 56
Query: 93 EKWKSLT 99
E+WK+L+
Sbjct: 57 ERWKALS 63
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V VG+ GEKWK+LT
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGEKWKALT 69
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KASR + R+ ++ KKDPN PKR SA+ F E R+ ++E+P + + VGK GE
Sbjct: 5 KASRKTKARS--IEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKVLGE 61
Query: 94 KWKSLTD 100
+WK+L +
Sbjct: 62 RWKALNE 68
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F + K EHP++ ++ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL-SIGDVAKKLGEMW 132
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 5/54 (9%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KD N PKR SA+F F+ +FRK +HP++ +V+ KA G WK L+D +KK
Sbjct: 200 KDENAPKRSMSAYFFFVSDFRK----KHPDL-SVTETSKAAGAAWKELSDEMKK 248
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K+DPN PKRPPS FF+F EF + +P + ++ V K GE W + +D+ K+ +
Sbjct: 87 KRDPNAPKRPPSGFFLFCSEFCPKIRSNNPGI-SIGDVAKKLGEMWNNKSDSEKQPY 142
>gi|444511434|gb|ELV09880.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K ++P + ++S + K GE W
Sbjct: 47 KDPNAPKRPPSAFFLFCSEYCPEIKGDYPGL-SISDIAKKLGEMW 90
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +FR K E+P + + K GE W
Sbjct: 38 KDPNAPKRPPSAFFLFCSDFRPKIKGEYPG-STIGDIAKKLGEMW 81
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+R K E+P + ++ V K GE W
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIKGEYPGL-SIGDVAKKLGEMW 133
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TDA K+ +
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKASGKMWSATTDAEKQPY 142
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K E P + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEPPGL-SIGDVAKKLGEMW 133
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +FR K E P + + V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETPGL-TIGDVAKKLGEMW 132
>gi|444706336|gb|ELW47678.1| Leiomodin-1 [Tupaia chinensis]
Length = 823
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW-KSLTDAI 102
KDP PKRPPSAFF+F E+ K EHP + ++ V K GE W + DA+
Sbjct: 90 KDPKAPKRPPSAFFLFCSEYCPKIKGEHPGL-SIGDVAKKLGEMWTNTAADAL 141
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+T+ V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+L +
Sbjct: 12 KTRGVEKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNE 69
>gi|394337181|gb|AFN27605.1| high mobility group protein 1 [Azumapecten farreri]
Length = 215
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP KPKRP +A+F+FL +FRK K ++ N+ + +AG E W+ LTD KK +
Sbjct: 96 DPTKPKRPQTAYFLFLGDFRK--KMKNSNIGHKDIIKQAGAE-WRQLTDQDKKPY 147
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
KD N+PKR SA+F FL R K NV ++ K +W+S+T + KK+
Sbjct: 17 KDANRPKRATSAYFFFLAHCRAEAKTTGRNVSKIADFTKEASAQWRSMTSSDKKQ 71
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
K+S S+ KRT +KKDP PKRP SA+ F ++ R+ KQ +P VG+ G
Sbjct: 9 KSSTSTQKRTTK---SKKDPAAPKRPLSAYMFFSQDHRERVKQANPEA-GFGDVGRLLGA 64
Query: 94 KWKSLTDAIKKEH 106
KWK +++A KK +
Sbjct: 65 KWKEMSEAEKKPY 77
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens Gv29-8]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K KKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L D
Sbjct: 17 KRTKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALND 69
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum CS3096]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L +
Sbjct: 14 TKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALNE 67
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKK---DPNKPKRPPSAFFVFLEEFRKVYKQEHP 79
DR KRK + +A + +++++ S K DPN PKRP SA+ ++L R+ K +HP
Sbjct: 511 DREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHP 570
Query: 80 NVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+ +++ + K GE WK ++ KKE W
Sbjct: 571 GI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|443899697|dbj|GAC77026.1| isocitrate dehydrogenase, alpha subunit [Pseudozyma antarctica
T-34]
Length = 308
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
+DP+ PKRPPSA+ +F E R+ +++HP + S + K E WK LTD +K
Sbjct: 225 RDPDAPKRPPSAYLLFQNEVRQEIRKKHPGLPYSSVLRKV-SEAWKELTDEQQK 277
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT
Sbjct: 21 KKDPNAPKRGLSAYMFFANETRDIVRSENPDV-TFGQVGRILGERWKALT 69
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 19 KPVEDRAAGKRKAVLKASRSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQ 76
K ED AA ++ K +S KS K KDPN PK+ SAFF+F + R K
Sbjct: 597 KKFEDLAAKDKERYRKEMQSYEPPADEGKSRKRKKDPNAPKKALSAFFLFCNDERPKVKA 656
Query: 77 EHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
+HP+ K VS + K G++W++ + K E
Sbjct: 657 DHPDWK-VSEIAKELGKRWETCKNKSKYE 684
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 8 GAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFL 67
G + K K + + V R+ + AV R S +R + + KD +KPK + + +FL
Sbjct: 502 GRINKLKKIIAQSVTTRSCNRFVAVSALIRISVRRL--LHTMAKDKSKPKGALTPYALFL 559
Query: 68 EEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAIKKE 105
+ K++HP+V K E+WK+LT KK+
Sbjct: 560 QSMHADQKKKHPSVTLDFKTFSKECSEQWKNLTAKEKKK 598
>gi|332025514|gb|EGI65677.1| FACT complex subunit Ssrp1 [Acromyrmex echinatior]
Length = 721
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
++D NKPKRPPSAF ++L R K ++P + +++ + K GGE W+ L D
Sbjct: 532 ERDENKPKRPPSAFMLWLSSARDSIKADNPGL-SITDIAKKGGEMWRELKD 581
>gi|242006908|ref|XP_002424284.1| predicted protein [Pediculus humanus corporis]
gi|212507684|gb|EEB11546.1| predicted protein [Pediculus humanus corporis]
Length = 768
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
N PKRPPSA+F+++ E R K+E+PN++ ++ + K GE W+ L D K
Sbjct: 542 NAPKRPPSAYFIWMNENRDKLKEEYPNLQ-MTELAKKAGEVWRELKDKTK 590
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 19 GKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 69
>gi|444519462|gb|ELV12862.1| High mobility group protein B1 [Tupaia chinensis]
Length = 157
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDP+ PKRPPSAFF+F E+ K EHP++ ++ K GE W
Sbjct: 38 KDPSAPKRPPSAFFLFCSEYHPQIKGEHPDI-SIRDAAKKLGEMW 81
>gi|365762037|gb|EHN03653.1| Nhp6bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|401841847|gb|EJT44170.1| NHP6B-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V VG+ GEKWK+LT
Sbjct: 24 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGEKWKALT 72
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F +FR K ++P + ++ K GE W S
Sbjct: 89 KDPNAPKRPPSAFFLFCADFRPKVKGDYPGL-SIGDTAKKLGEMWNS 134
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPMEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
+++ KKE W
Sbjct: 587 AMSKE-KKEEW 596
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+ K EHP + ++ V K GE W
Sbjct: 99 KDPNAPKRPPLAFFLFYSEYYPKIKGEHPGL-SIGDVAKKLGEMW 142
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KASR + R+ ++ KKDPN PKR SA+ F E R+ ++E+P + + VGK GE
Sbjct: 5 KASRKTKPRS--IEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKVLGE 61
Query: 94 KWKSLTD 100
+WK+L +
Sbjct: 62 RWKALNE 68
>gi|385302209|gb|EIF46351.1| nucleosome binding protein [Dekkera bruxellensis AWRI1499]
Length = 91
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
KKDPN PKR SA+ F E R + + E+P + A +GK GEKWK+L
Sbjct: 9 KKDPNAPKRSLSAYMFFANEQRDIVRAENPGI-AFGQIGKILGEKWKAL 56
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP+ PKRPPS FF+F E R K +P + +V V K GE W +L D+ K+ +
Sbjct: 89 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGI-SVGDVAKKLGEMWNNLNDSEKQPY 142
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA GE W + TD
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGEMWSTTTD 136
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L +
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKILGERWKALNE 69
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L+D
Sbjct: 19 KKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALSD 68
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KD N PKRPPSAFF+F E+ K EHP + ++ V K GEKW
Sbjct: 89 KDSNAPKRPPSAFFLFCSEYCPKIKGEHPGL-SLGDVAKKLGEKW 132
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KKDPN PK+P SA+FVF E R + ++P + VS K GE+W+ +T+ K+
Sbjct: 132 KKDPNAPKKPKSAYFVFAETRRDALRAQYPEDR-VSDTAKRTGEEWRGMTEEQKR 185
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPNKP+ + + F +E R Q+HPN +V+ V K G +W+ LTD KK +
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHPNA-SVTEVAKLIGAQWRQLTDEQKKPY 98
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K +HP + ++ K GE W
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMW 171
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
K+S S+ KRT AKKDP+ PKRP SA+ F ++ R+ K +P VG+ G
Sbjct: 35 KSSTSTQKRTTK---AKKDPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGA 90
Query: 94 KWKSLTDAIKKEH 106
KWK +++A KK +
Sbjct: 91 KWKEMSEAEKKPY 103
>gi|358337868|dbj|GAA37121.2| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 378
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
KDP PKR SAFF F + FR + EHP+ K VS + K G +W+ TD K E
Sbjct: 100 KDPAMPKRSWSAFFFFCDAFRSKIRNEHPDWK-VSDIAKELGRRWEECTDKEKYE 153
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV-SAVGKAGGEKWKSLTD 100
KD N+PK P SA+ F++ R+ ++++HPN + S K EKWK +++
Sbjct: 10 KDKNRPKHPMSAYACFVQVIREEHRKKHPNENVIFSEFSKKCAEKWKQMSN 60
>gi|407404609|gb|EKF29994.1| high mobility group protein, putative [Trypanosoma cruzi
marinkellei]
Length = 361
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KD N PKR SA+F F +FRK +HP++ +V+ KA G WK L+D +KK
Sbjct: 291 KDENAPKRSMSAYFFFASDFRK----KHPDL-SVTETSKAAGAAWKELSDEMKK 339
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+ K+ HP + + V K GE W
Sbjct: 78 KDPNAPKRPPSAFFLFCPEYHPKLKEGHPGL-IIGDVAKKLGEMW 121
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPTEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K AKKDPN PKR SA+ F E R ++E+P V + VGK GE+WK+L++
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRDNVREENPGV-SFGQVGKILGERWKALSE 69
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++ KKE W
Sbjct: 540 KDPNAPKRPMSAYMLWLNASRERIKSDHPGI-SITDLSKKAGELWKAMSKE-KKEEW 594
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
K+S S+ KRT AKKDP+ PKRP SA+ F ++ R+ K +P VG+ G
Sbjct: 9 KSSTSTQKRTT---KAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGA 64
Query: 94 KWKSLTDAIKKEH 106
KWK +++A KK +
Sbjct: 65 KWKEMSEAEKKPY 77
>gi|432117313|gb|ELK37700.1| Putative high mobility group protein B3-like protein [Myotis
davidii]
Length = 147
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
KK+PN PKRP S FF+F EFR K +P ++ V K GE W +L+D+
Sbjct: 86 KKEPNVPKRPTSGFFLFCSEFRPKIKSTNPG-SSIGDVAKKLGEMWNNLSDS 136
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
PN PKRPPSAFF+F E+R K EHP++ ++ V K GE W
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHPDL-SIGDVEKKLGEVW 133
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F +E R ++E+P + + VGK GE+WK+L D
Sbjct: 19 KKDPNAPKRGLSAYMFFAQEQRDNVREENPGI-SFGQVGKVLGERWKALND 68
>gi|365982187|ref|XP_003667927.1| hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS 421]
gi|343766693|emb|CCD22684.1| hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS 421]
Length = 93
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F + R + K E+PN+ +GK G KWK L D K+ +
Sbjct: 15 KKDPNAPKRGLSAYMFFANDNRDIVKAENPNI-TFGQIGKVLGAKWKELNDEEKQPY 70
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +V+ + K GE WK
Sbjct: 529 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|339046261|ref|NP_009647.2| Nhp6bp [Saccharomyces cerevisiae S288c]
gi|341942236|sp|P11633.3|NHP6B_YEAST RecName: Full=Non-histone chromosomal protein 6B
gi|4036|emb|CAA33378.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45271022|gb|AAS56892.1| YBR089C-A [Saccharomyces cerevisiae]
gi|151946484|gb|EDN64706.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190408749|gb|EDV12014.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256274037|gb|EEU08951.1| Nhp6bp [Saccharomyces cerevisiae JAY291]
gi|290878106|emb|CBK39165.1| Nhp6bp [Saccharomyces cerevisiae EC1118]
gi|333454471|tpg|DAA07210.2| TPA: Nhp6bp [Saccharomyces cerevisiae S288c]
Length = 99
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALT 69
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPMEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +V+ + K GE WK
Sbjct: 529 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDP+ PKR SAFF F + FR + EHP+ K VS + K G +W+ +D K E
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEKYEQ 148
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +V+ + K GE WK
Sbjct: 523 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWK 580
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 581 GMSKE-KKEEW 590
>gi|1870104|emb|CAA85042.1| NHP6B [Saccharomyces cerevisiae]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT
Sbjct: 21 KKDPNAPKRRLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALT 69
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDP+ PKR SA+ F E R + + E+P + + VGK GEKWK+LT
Sbjct: 14 KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALT 62
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F + K EHP++ ++ V K GE W
Sbjct: 89 KDPNAPKRPPSAFFLFYSVYYPKIKGEHPDL-SIGDVAKKLGEMW 132
>gi|343427561|emb|CBQ71088.1| probable NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
K+S S+ KRT +KKDP PKRP SA+ F ++ R+ K +P S VG+ G
Sbjct: 9 KSSTSTQKRTTK---SKKDPAAPKRPLSAYMFFSQDHRERVKTANPEA-GFSDVGRLLGA 64
Query: 94 KWKSLTDAIKKEH 106
KW ++DA KK +
Sbjct: 65 KWNEMSDAEKKPY 77
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KD N PKR SA+F F+ +FRK +HP++ +V+ KA G WK L+D +KK +
Sbjct: 200 KDENAPKRSMSAYFFFVGDFRK----KHPDL-SVTETSKAAGAAWKELSDEMKKPY 250
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
DPN PKRP S FF+F EF K +P + ++ V K GE W +L D+ K+ + K+
Sbjct: 26 DPNAPKRPLSGFFLFCSEFHPKMKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKKY 84
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +V+ + K GE WK
Sbjct: 280 RKSRKKPLEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWK 337
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 338 GMSKE-KKEEW 347
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
KDP+ PKR SAFF F + FR + EHP+ K VS + K G +W+ +D K E
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEKYE 147
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K +HP + ++ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMW 133
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + K E+P+V + VG+ GEKWK+LT
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENPDV-SFGQVGRILGEKWKALT 63
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K +HP + ++ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMW 133
>gi|406862701|gb|EKD15750.1| nucleosome binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R+ ++E+P + VGK GE+WK+L D
Sbjct: 19 KKDPNAPKRGLSAYMFFANEQRENVREENPGI-TFGQVGKVLGERWKALND 68
>gi|363755760|ref|XP_003648095.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892131|gb|AET41278.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
Length = 94
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKR SA+ F E R + + E+P + + VG+ GEKWK+L+D K+ +
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGI-SFGQVGRVLGEKWKALSDDEKQPY 70
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KR + K ++KDP+ PKRP SAF +F +E R ++E+P+ + +GK G W+ L D
Sbjct: 14 KRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENPDA-SFGDLGKLLGAAWRELND 72
Query: 101 AIKK 104
K+
Sbjct: 73 KDKQ 76
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K K+DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 81 KTKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSAATD 136
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K E P + V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCAEYRPKVKGETPGA-TIGDVAKRLGEMW 132
>gi|388854657|emb|CCF51814.1| probable NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 99
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
K+S S+ KRT +KKDP PKRP SA+ F ++ R+ K ++P VG+ G
Sbjct: 9 KSSTSTQKRTTK---SKKDPAAPKRPLSAYMFFSQDQRERVKADNPEA-GFGDVGRLLGA 64
Query: 94 KWKSLTDAIKKEH 106
+WK ++DA KK +
Sbjct: 65 RWKEMSDAEKKPY 77
>gi|412985385|emb|CCO18831.1| CG4797 [Bathycoccus prasinos]
Length = 669
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KDPN PKRP S + +F E R K+E+P+ +++ V K G +WKS+TD
Sbjct: 574 EKDPNAPKRPLSTYMIFSAEMRAKVKEENPDF-SITDVAKELGVRWKSVTD 623
>gi|159476440|ref|XP_001696319.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158282544|gb|EDP08296.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 179
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PK+P ++F F R+ K E+P + A VGK GEKWK L+ KKE+
Sbjct: 57 DPNAPKKPLTSFMYFSNAIRESVKSENPGI-AFGEVGKVIGEKWKGLSADDKKEY 110
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F ++R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSAFFLFCSDYRPKIK-EHPGL-SIGDVAKKLGEMW 132
>gi|413949487|gb|AFW82136.1| hypothetical protein ZEAMMB73_682960 [Zea mays]
Length = 488
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGK---------AGGEKWKSLTDAIKKE 105
KPK PPS FFVF+ FR+ Y+ +HP K+V+ + GGE +L A+
Sbjct: 228 KPKHPPSTFFVFMSGFRQEYQVQHPGNKSVATMSSLFVLVDQDTCGGEGQLAL--ALWAT 285
Query: 106 HWM 108
HW+
Sbjct: 286 HWL 288
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PKRP SA+ F +++R+ K E+P V + +G+ G KWKSL + KK +
Sbjct: 7 EKDPNAPKRPLSAYMFFSQDWRERIKTENPEV-SFGEIGRLLGLKWKSLGEEEKKPY 62
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+R + EHP + ++ K GE W
Sbjct: 90 KDPNAPKRPPLAFFLFCSEYRPKIEGEHPGL-SIGDTAKKLGELW 133
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 38 SSNKRTKNVK-SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
+ KR K VK KKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK
Sbjct: 5 DAGKRGKAVKKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWK 63
Query: 97 SLTD 100
+L +
Sbjct: 64 ALNE 67
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K +HP + ++ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMW 133
>gi|45187563|ref|NP_983786.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|74694642|sp|Q75B82.1|NHP6_ASHGO RecName: Full=Non-histone chromosomal protein 6
gi|44982301|gb|AAS51610.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|374106998|gb|AEY95906.1| FADL310Wp [Ashbya gossypii FDAG1]
Length = 94
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKR SA+ F E R + + E+P + + VG+ GEKWK+L+D K+ +
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGI-SFGQVGRVLGEKWKALSDDEKQPY 70
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PS FF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRTPSVFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE W
Sbjct: 511 DRKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIW 568
Query: 96 KSLTDAIKKEHW 107
K ++ KKE W
Sbjct: 569 KGMSKE-KKEEW 579
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE W
Sbjct: 528 DRKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIW 585
Query: 96 KSLTDAIKKEHW 107
K ++ KKE W
Sbjct: 586 KGMSKE-KKEEW 596
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
KDP+ PKR SAFF F + FR + EHP+ K VS + K G +W+ +D K E
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPDWK-VSDIAKELGRRWEECSDKEKYE 147
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 524 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 581
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 582 GMSKE-KKEEW 591
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 646 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 703
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 704 GMSKE-KKEEW 713
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++ KKE W
Sbjct: 540 KDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSKE-KKEEW 594
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHPGL-SIGDTAKKLGELW 82
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 532 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 589
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 590 GMSKE-KKEEW 599
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|378727181|gb|EHY53640.1| non-histone chromosomal protein 6 [Exophiala dermatitidis
NIH/UT8656]
Length = 102
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KAS+SS + + K KKDPN PKR SA+ F E R+ ++E+P + + VGK G+
Sbjct: 3 KASKSSKTKGRGEKK-KKDPNAPKRGLSAYMFFANEQRESVREENPGI-SFGQVGKVLGD 60
Query: 94 KWKSLTD 100
+WK+L +
Sbjct: 61 RWKALNE 67
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
KD V P +AAGKRK KDPN PKRPPSAFFVF E R
Sbjct: 73 KDMKGYVPPKGSKAAGKRK--------------------KDPNAPKRPPSAFFVFCAEHR 112
Query: 72 KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K ++P + + + K G W T K H
Sbjct: 113 GRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKLPH 146
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F + R+ ++E+P + + VGK GE+WK+L+D ++ +
Sbjct: 19 KKDPNAPKRGLSAYMFFANDNREKVREENPGI-SFGQVGKMLGERWKALSDTDRRPY 74
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
++A + R S K+T K K DPN PKRP SA+ ++L R+ K +HP + +++ +
Sbjct: 521 KRAKVAKDRKSRKKTVEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLS 578
Query: 89 KAGGEKWKSLTDAIKKEHW 107
K GE WK + KKE W
Sbjct: 579 KKAGEIWKGMPKE-KKEEW 596
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F +R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRTPSAFFLFCSAYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSAFF+F E+ K E P + ++ K GE W S
Sbjct: 39 KDPNAPKRPPSAFFLFCSEYHPKIKGERPGL-SIGDAAKKLGETWNS 84
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93
KA+ + + K KKDPN PKR SA+ F E R+ ++E+P + + VGK GE
Sbjct: 3 KAAAGKRGKAEKTKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGE 61
Query: 94 KWKSLTD 100
+WK+L +
Sbjct: 62 RWKALNE 68
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 529 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWK 586
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 587 GMSKE-KKEEW 596
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFFVF + R K+++P + ++ + K GE W
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGELW 156
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
R + +++ KDPNKP+ SA+ F+ R+ +K++HP + K E+WK+++
Sbjct: 17 RLRQIEAMTKDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMS 75
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+ R S K+ VK + DPN PKRP SA+ ++L R+ K +HP + +++ + K G
Sbjct: 525 MSKDRKSRKKPMEVKKGR-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAG 582
Query: 93 EKWKSLTDAIKKEHW 107
E WK ++ KKE W
Sbjct: 583 EIWKGMSKE-KKEEW 596
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 12 KDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFR 71
KD V P +AAGKRK KDPN PKRPPSAFFVF E R
Sbjct: 73 KDMKGYVPPKGSKAAGKRK--------------------KDPNAPKRPPSAFFVFCAEHR 112
Query: 72 KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K ++P + + + K G W T K H
Sbjct: 113 GRIKADNPGM-GIGDIAKQLGLLWGKQTPKDKLPH 146
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
K KKDPNKPKR SA+ F++++R+ K E+P+ +VG+ G KW+ ++ + KK
Sbjct: 13 AKRGKKDPNKPKRALSAYMFFVQDWRERIKSENPDAD-FGSVGRLLGAKWQEMSASEKKP 71
Query: 106 H 106
+
Sbjct: 72 Y 72
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFFVF E R K+E P + ++ K GE W + +
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECPGI-SIGDTAKKLGELWSTQS 133
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+++ V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+L +
Sbjct: 12 KSRGVEKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNE 69
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+ + EHP + + V K GE W
Sbjct: 39 KDPNAPKRPPLAFFLFCSEYHPKIRGEHPGL-YIGDVAKKLGEMW 82
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK +T KKE W
Sbjct: 122 KDPNAPKRPMSAYMLWLNASREKIKADHPGI-SITDLSKKAGEIWKGMTKE-KKEEW 176
>gi|444727550|gb|ELW68036.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
K+P+ PKRPPSAFF+F E+R K EHP + ++ K GE W
Sbjct: 89 KNPSAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIDDAAKKLGEMW 132
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDP+ PKRPPSAFF+F E+ K EHP + ++ V K GE W
Sbjct: 77 KDPSAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVVKKLGEMW 120
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PS FF+F E+R K EHP + + V K GE W
Sbjct: 90 KDPNAPKRAPSTFFLFCSEYRPKIKGEHPGL-STGDVAKKLGEMW 133
>gi|345569047|gb|EGX51916.1| hypothetical protein AOL_s00043g650 [Arthrobotrys oligospora ATCC
24927]
Length = 105
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKR SA+ F E R+ + E+P + A VGK GE+WK+LT A +K +
Sbjct: 21 DPNAPKRGLSAYMFFANEQRENVRAENPGI-AFGQVGKVLGERWKALTTAQRKPY 74
>gi|444713636|gb|ELW54532.1| High mobility group protein B1 [Tupaia chinensis]
Length = 148
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPS FF+F E+R + EHP + + V K GE W + K+ +
Sbjct: 28 KDPNGPKRPPSVFFLFCSEYRPKIR-EHPGL-LIGDVAKKLGEMWNNTAAGTKQPY 81
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
R S K+ VK K DPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK
Sbjct: 531 RKSRKKPVEVKKGK-DPNAPKRPMSAYMLWLNASREKIKADHPGI-SITDLSKKAGEIWK 588
Query: 97 SLTDAIKKEHW 107
++ KKE W
Sbjct: 589 GMSKE-KKEEW 598
>gi|19923236|ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens]
gi|13878931|sp|P23497.3|SP100_HUMAN RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Lysp100b;
AltName: Full=Nuclear dot-associated Sp100 protein;
AltName: Full=Speckled 100 kDa
gi|3252911|gb|AAC39790.1| SP100-HMG nuclear autoantigen [Homo sapiens]
gi|119591334|gb|EAW70928.1| SP100 nuclear antigen, isoform CRA_b [Homo sapiens]
Length = 879
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN PKRPP AFF+F E+R K EHP + V K G W + A K+
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQ 816
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPP AFF F E+ K EHP + ++ V K GE W + K+ +
Sbjct: 57 KDPNAPKRPPLAFFFFCSEYCPKIKGEHPGL-SIGDVAKKLGEMWNNTAAGDKQPY 111
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
TK + +KKDP+ PKR SA+ F ++ R K+E+P + +GK GE+WK+L++
Sbjct: 20 TKKARRSKKDPSAPKRGLSAYMFFSQDQRPTVKEENPKA-SFGEIGKILGERWKALSEEE 78
Query: 103 KKEH 106
KK +
Sbjct: 79 KKPY 82
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK ++ KKE W
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKE-KKEEW 596
>gi|23396867|sp|Q9N1Q5.1|SP100_HYLLA RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239187|gb|AAF43110.1|AF169948_1 SP100-HMG nuclear autoantigen, partial [Hylobates lar]
Length = 242
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN PKRPP AFF+F E+R K EHP + ++ V K E W + A K+
Sbjct: 139 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGL-SIDDVVKKLAEMWNNTAAADKQ 190
>gi|358372276|dbj|GAA88880.1| nucleosome binding protein (Nhp6a) [Aspergillus kawachii IFO 4308]
Length = 104
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F + R+ ++E+P + + VGK GE+WK+L+D ++ +
Sbjct: 20 KKDPNAPKRGLSAYMFFANDNREKVREENPGI-SFGQVGKMLGERWKALSDTDRRPY 75
>gi|7544638|gb|AAA73079.2| unknown [Saccharomyces cerevisiae]
Length = 183
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 11/92 (11%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
+E KP + A+ +LKAS+ + R + +K PKRP SA+F++L++ R +
Sbjct: 12 HESSKPTFNLAS----TLLKASKRTQTRNELMKQG------PKRPTSAYFLYLQDHRSQF 61
Query: 75 KQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+E+P ++ + + K GEKW++L +K+++
Sbjct: 62 VKENPTLRP-AEISKIAGEKWQNLEADMKEKY 92
>gi|241632349|ref|XP_002410341.1| structure-specific recognition protein, putative [Ixodes
scapularis]
gi|215503398|gb|EEC12892.1| structure-specific recognition protein, putative [Ixodes
scapularis]
Length = 730
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
++D NKPKR PSA+F++L E R+ K+++P ++ + K GE WK++TD
Sbjct: 549 ERDENKPKRAPSAYFLWLAENREQIKRDNPGF-GITDITKRAGELWKTVTD 598
>gi|448084218|ref|XP_004195549.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359376971|emb|CCE85354.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDP+ PKR SA+ F E R + + E+P + + VGK GEKWK++T
Sbjct: 13 KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKAMT 61
>gi|320580355|gb|EFW94578.1| high-mobility group non-histone chromosomal protein, putative
[Ogataea parapolymorpha DL-1]
Length = 91
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DPN PKR SA+ F E R + + E+P + A +GK GEKWK+L +A K
Sbjct: 15 DPNAPKRSLSAYMFFANEQRDIVRAENPGI-AFGQIGKLLGEKWKALDEAGK 65
>gi|119591335|gb|EAW70929.1| SP100 nuclear antigen, isoform CRA_c [Homo sapiens]
Length = 844
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN PKRPP AFF+F E+R K EHP + V K G W + A K+
Sbjct: 730 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQ 781
>gi|62822330|gb|AAY14879.1| unknown [Homo sapiens]
Length = 843
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN PKRPP AFF+F E+R K EHP + V K G W + A K+
Sbjct: 729 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG-MWNNTAAADKQ 780
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFFVF + R K ++P + ++ + K GE W L+
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNPGI-SIGDIAKKLGEMWSKLS 137
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 54/73 (73%), Gaps = 6/73 (8%)
Query: 36 SRSSNKRTKNVKSAK-----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKA 90
SRS++ R K V+ K KDPNKPK+PPS FFVFL++FR+ + +P+ K+V++VGKA
Sbjct: 10 SRSTDDRLK-VRGNKGGKKTKDPNKPKKPPSPFFVFLDDFRREFNLANPDNKSVASVGKA 68
Query: 91 GGEKWKSLTDAIK 103
G+KWKS+T+ K
Sbjct: 69 AGKKWKSMTEEDK 81
>gi|410081503|ref|XP_003958331.1| hypothetical protein KAFR_0G01620 [Kazachstania africana CBS
2517]
gi|372464919|emb|CCF59196.1| hypothetical protein KAFR_0G01620 [Kazachstania africana CBS
2517]
Length = 95
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
K + KKDPN PKR SA+ F E R + + E+P+V +G+ GE+WK+L
Sbjct: 9 KRTQRRKKDPNAPKRALSAYMFFANENRDIVRSENPDV-TFGQIGRILGERWKAL 62
>gi|255936601|ref|XP_002559327.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583947|emb|CAP91971.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 108
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
K V+ KKDPN PKR SA+ F + R ++E+P + + VGK G+KWK+L++ +
Sbjct: 16 KRVQRRKKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKQLGDKWKALSETDR 74
Query: 104 KEH 106
K +
Sbjct: 75 KPY 77
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK ++ KKE W
Sbjct: 542 KDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMSKD-KKEEW 596
>gi|392300930|gb|EIW12019.1| Nhp6bp [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 162
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT K+ +
Sbjct: 84 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALTAEEKQPY 139
>gi|344235657|gb|EGV91760.1| hypothetical protein I79_006916 [Cricetulus griseus]
Length = 139
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K HP + ++ V K GE W
Sbjct: 16 KDPNAPKRPPSAFFLFCSEYRPKTKG-HPGL-SIGDVAKKLGETW 58
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFFVF + R K E+P + ++ + K GE W T
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENPGI-SIGDIAKKLGELWSKQT 138
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
KDPNKP+ S++ F++ R+ +K++HP S K E+WK+++
Sbjct: 4 KDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMS 53
>gi|444723313|gb|ELW63971.1| High mobility group protein B1 [Tupaia chinensis]
Length = 171
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
KDPN PKRPP FF+F E+R K+E P + + V K GE W + KK
Sbjct: 81 KDPNAPKRPPLVFFLFCSEYRPKIKREQPGL-TIDDVAKKLGEMWNNTAADAKK 133
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD K+ +
Sbjct: 152 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSATTDLEKQPY 205
>gi|156553871|ref|XP_001600877.1| PREDICTED: FACT complex subunit Ssrp1-like [Nasonia vitripennis]
Length = 735
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KD NKPKRP SA+ ++L R+ K ++P +K V K GGE WK L D
Sbjct: 545 EKDENKPKRPASAYMLYLNSVREEIKAKYPGLKVTEVVQK-GGEMWKELKD 594
>gi|90076282|dbj|BAE87821.1| unnamed protein product [Macaca fascicularis]
Length = 123
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K EHP +
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFFVF + R K+++P + ++ + K GE W + +
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGI-SIGDIAKKLGEMWATQS 137
>gi|156382433|ref|XP_001632558.1| predicted protein [Nematostella vectensis]
gi|156219615|gb|EDO40495.1| predicted protein [Nematostella vectensis]
Length = 287
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 32 VLKASRSSNKRTKNVKSAK----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA- 86
V A+ SS+K+ K+ SAK KDPN PK+P +AFF+F ++ R V +++H + AV
Sbjct: 86 VSNATTSSHKKGKSRSSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGH 145
Query: 87 --VGKAGGEKWKSLTDAIKKEHW 107
+ K+ ++W +L KK ++
Sbjct: 146 HELTKSLAKEWNNLLPDEKKVYY 168
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFF+F E R K E P + ++ K GE+W T
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGL-SIGDTAKKLGERWSEQT 138
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFF+F E R K E P + ++ K GE+W T
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGL-SIGDTAKKLGERWSEQT 138
>gi|448530095|ref|XP_003869985.1| Nhp6a non-histone chromatin component [Candida orthopsilosis Co
90-125]
gi|354547725|emb|CCE44460.1| hypothetical protein CPAR2_402610 [Candida parapsilosis]
gi|380354339|emb|CCG23854.1| Nhp6a non-histone chromatin component [Candida orthopsilosis]
Length = 93
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDP+ PKR SA+ F E R + + E+P + + VGKA G+KWK+L+
Sbjct: 14 KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKALGDKWKALS 62
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F +FR K E P + V K GE W
Sbjct: 89 KDPNAPKRPPSAFFIFCADFRAKVKGETPGP-TIGDVAKKLGEMW 132
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DP+ PKRPPS FF+F EFR K +P + ++ V K GE+ +L+D+ K+
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKRLGERRNNLSDSGKQ 293
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W ++TD
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTVTD 136
>gi|126274287|ref|XP_001387507.1| Nonhistone chromosomal protein 6A [Scheffersomyces stipitis CBS
6054]
gi|126213377|gb|EAZ63484.1| Nonhistone chromosomal protein 6A, partial [Scheffersomyces
stipitis CBS 6054]
Length = 85
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDP+ PKR SA+ F E R + + E+P + + VGK GEKWK+LT
Sbjct: 12 KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALT 60
>gi|355691926|gb|EHH27111.1| hypothetical protein EGK_17228 [Macaca mulatta]
Length = 196
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
D N PKRPPS FF+F EF K +P + ++ + K GE WK+L D+ K+ +
Sbjct: 76 DSNAPKRPPSGFFLFSSEFCPKMKSTNPGI-SIGDMVKKLGEMWKNLNDSEKQPY 129
>gi|158300246|ref|XP_320213.4| AGAP012335-PA [Anopheles gambiae str. PEST]
gi|157013066|gb|EAA00360.4| AGAP012335-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
DPN PKRP +AF +F+ R+ K++ P + +++ + K GGE WK L D K+ W K
Sbjct: 563 DPNAPKRPSTAFMLFMNASREQIKKDFPGL-SITEMSKKGGELWKELKD---KKEWEAK 617
>gi|395732940|ref|XP_002813012.2| PREDICTED: nuclear autoantigen Sp-100-like [Pongo abelii]
Length = 263
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 150 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 190
>gi|18653894|gb|AAL77438.1|L79988_1 nuclear autoantigen, partial [Homo sapiens]
Length = 403
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 289 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 329
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F + R ++E+P +K VGK GE+WK+L++
Sbjct: 21 KKDPNAPKRGLSAYMFFANDMRDKVREENPGIK-FGEVGKILGERWKALSE 70
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W ++TD
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTVTD 136
>gi|324526583|gb|ADY48692.1| High mobility group protein 1.2, partial [Ascaris suum]
Length = 248
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K KKDPN PKR SAFF F + R +Q+HP K V V + G WK+L+D
Sbjct: 128 KRVKKDPNAPKRALSAFFFFSHDKRPEVQQQHPEWK-VGQVAQELGRYWKALSD 180
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFF+F E R K E P + ++ K GE W T
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESPGL-SIGDTAKKLGEMWSEQT 138
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRP AFF+F E+R K EHP + ++ V K GE W
Sbjct: 89 KDPNAPKRPLLAFFLFCSEYRPQIKGEHPGL-SIGDVAKKLGEMW 132
>gi|401826764|ref|XP_003887475.1| HMG domain-containing chromatin-associated protein [Encephalitozoon
hellem ATCC 50504]
gi|395459993|gb|AFM98494.1| HMG domain-containing chromatin-associated protein [Encephalitozoon
hellem ATCC 50504]
Length = 181
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PK+P S +F+F +E RK K E + V+ G+A E WK LTD ++E+
Sbjct: 18 RKDPNAPKKPMSGYFIFGQEQRK--KNEELSKLPVAEQGRAISEMWKKLTDEEREEY 72
>gi|23396868|sp|Q9N1Q6.1|SP100_GORGO RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239185|gb|AAF43109.1|AF169947_1 SP100-HMG nuclear autoantigen, partial [Gorilla gorilla]
Length = 225
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 114 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 154
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN KRPPSAFF+F +FR K EHP + ++ K G W S
Sbjct: 89 KDPNALKRPPSAFFIFCADFRAKIKSEHPGL-SIGDTAKKLGVMWNS 134
>gi|396081600|gb|AFN83216.1| high mobility group protein [Encephalitozoon romaleae SJ-2008]
Length = 181
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
R+K + +KDPN PK+P S +F+F +E RK K E + V+ G++ E WK LTD
Sbjct: 10 RSKAMVKRRKDPNAPKKPMSGYFIFGQEQRK--KNEELSKLPVAEQGRSISEMWKKLTDE 67
Query: 102 IKKEH 106
++E+
Sbjct: 68 EREEY 72
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R + + E+P + VG+ GEKWK+L +
Sbjct: 12 KKDPNAPKRALSAYMFFANENRDIVRAENPGI-TFGQVGRILGEKWKALNE 61
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 34 KASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGG 92
K S+S+ K++K AKKDPN PKR S++ F +E R +E+P++ + V+AVGK G
Sbjct: 4 KVSKSAGKKSKR---AKKDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAVGKLVG 60
Query: 93 EKWKSLTDAIK 103
W SL ++ K
Sbjct: 61 AAWNSLDESEK 71
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K+DP P+RPPS+F +F ++ K+E+PN +V+ V KA W + TD K+ +
Sbjct: 89 KRDPQAPRRPPSSFLLFCQDNYAQLKRENPNW-SVAQVAKASARMWSTTTDVDKQPY 144
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP +P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 136
>gi|384251656|gb|EIE25133.1| hypothetical protein COCSUDRAFT_40465 [Coccomyxa subellipsoidea
C-169]
Length = 253
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 6/50 (12%)
Query: 57 KRPPSAFFVFLEEFRKVYK-----QEHPNVK-AVSAVGKAGGEKWKSLTD 100
KR P+AFF+F EE R+ + Q P VK +V AV KA GEKW++LTD
Sbjct: 4 KRAPTAFFIFSEEQREATRAECQAQAEPRVKVSVGAVAKAIGEKWRALTD 53
>gi|340992807|gb|EGS23362.1| hypothetical protein CTHT_0010300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKR SA+ F E R ++E+P + + VGK GE+WK+LTD
Sbjct: 21 DPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKILGERWKALTD 68
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
PN PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 134
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K DP+KPKRP +A+F FL EFRK K + V + GEKW+++T A K ++
Sbjct: 133 KADPDKPKRPQTAYFYFLAEFRKAMKAK--GVIEGKKLTSLSGEKWRAMTPAEKAKY 187
>gi|23396869|sp|Q9N1Q7.1|SP100_PANTR RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239183|gb|AAF43108.1|AF169946_1 SP100-HMG nuclear autoantigen, partial [Pan troglodytes]
Length = 215
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 120 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 160
>gi|195489309|ref|XP_002092681.1| GE11532 [Drosophila yakuba]
gi|194178782|gb|EDW92393.1| GE11532 [Drosophila yakuba]
Length = 726
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
S KKD KPKR +AF ++L + R+ K+++P +K V+ + K GGE WK L D
Sbjct: 547 SKKKDSGKPKRATTAFMLWLNDTRESIKRDNPGIK-VTEIAKKGGEMWKELKD 598
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 81
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
N PKRPPSAFF+F E+R K EHP + ++ V K GE W +
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN 45
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 15 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 62
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPN PKRPPS FF+F R ++E P + ++ + K GEKW ++
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAM 152
>gi|344228278|gb|EGV60164.1| hypothetical protein CANTEDRAFT_110112 [Candida tenuis ATCC
10573]
Length = 89
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDP+ PKR SA+ F + R + + E+P + A VG+ GE+WK+LT
Sbjct: 11 KKDPDAPKRSLSAYMFFANDNRDIVRAENPGI-AFGQVGRLLGERWKALT 59
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
+ +RTK AKKDP PKRP SA+ F +++R K +V VG+ G KWK
Sbjct: 11 TGTRRTK----AKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGTKWKE 66
Query: 98 LTDAIKKEH 106
++D KK +
Sbjct: 67 MSDEEKKPY 75
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPN PKRPPS FF+F R ++E P + ++ + K GEKW ++
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAM 152
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPN PKRPPS FF+F R ++E P + ++ + K GEKW ++
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAM 152
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPN PKRPPS FF+F R ++E P + ++ + K GEKW ++
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAM 152
>gi|195381989|ref|XP_002049715.1| GJ21748 [Drosophila virilis]
gi|194144512|gb|EDW60908.1| GJ21748 [Drosophila virilis]
Length = 112
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPN PKRPPS FF+F R ++E P + ++ + K GEKW ++
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAM 152
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPN PKRPPS FF+F R ++E P + ++ + K GEKW ++
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGL-SIGDIAKKLGEKWNAM 152
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
K PN KRPPSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 28 KGPNAAKRPPSAFFLFCSEYRPKIKGEHPGL-SIGGVAKKLGEVW 71
>gi|332815636|ref|XP_003309551.1| PREDICTED: nuclear autoantigen Sp-100-like [Pan troglodytes]
Length = 205
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 131
>gi|42601334|gb|AAS21361.1| high mobility group protein 2 [Oikopleura dioica]
Length = 105
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWM 108
AKKDPN PKRP +AFF+F + R K+ P VS V K G WK + DA KE +
Sbjct: 4 AKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEV-DAKTKEKYQ 62
Query: 109 V 109
V
Sbjct: 63 V 63
>gi|401887840|gb|EJT51817.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
Length = 234
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV---KAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRPPSA+ +F + R+ +Q HP + + +S + +WK L + +K+ +
Sbjct: 85 KDPNAPKRPPSAYLLFQNDIREEIRQAHPGMPYKEVLSVIAN----RWKDLDEPARKDAY 140
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+F F + R+ + E+PN K ++ + EKW++L D
Sbjct: 111 KKDPNAPKRALSAYFFFCNDIRQEVRDENPN-KKITEIATLLAEKWRALPD 160
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKD N PKR SAF F + R K+E P+++ + + G +WK ++D ++ +
Sbjct: 23 KKDKNAPKRALSAFMFFSNDIRDTVKKEMPDLQFLE-ISSEIGRRWKQISDEDRRPY 78
>gi|406699554|gb|EKD02756.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 234
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV---KAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRPPSA+ +F + R+ +Q HP + + +S + +WK L + +K+ +
Sbjct: 85 KDPNAPKRPPSAYLLFQNDIREEIRQAHPGMPYKEVLSVIAN----RWKDLDEPARKDAY 140
>gi|426338818|ref|XP_004033369.1| PREDICTED: nuclear autoantigen Sp-100-like [Gorilla gorilla
gorilla]
Length = 205
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 131
>gi|392512722|emb|CAD25487.2| HIGH MOBILITY GROUP PROTEIN [Encephalitozoon cuniculi GB-M1]
Length = 181
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
R+K +KDPN PK+P S +F+F +E RK K E + V+ G+A E WK L+D
Sbjct: 10 RSKTAVKRRKDPNAPKKPMSGYFIFGQEQRK--KNEELSRLPVADQGRAISEMWKKLSDE 67
Query: 102 IKKEH 106
++E+
Sbjct: 68 EREEY 72
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN P+RP S FF+F EF K +P + ++ V K GE W +L D+ K+ +
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPY 80
>gi|157822723|ref|NP_001102933.1| high mobility group protein B4 [Rattus norvegicus]
gi|149023997|gb|EDL80494.1| rCG31445 [Rattus norvegicus]
Length = 181
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 52 DPNKPKRPPSAFFVF-LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP P++PPS+F +F L+ F K+ KQE+PN V V KA G+ W +TD K+ +
Sbjct: 89 DPLAPRKPPSSFLLFSLDHFAKL-KQENPNWTVVQ-VAKAAGKMWSMITDVDKRPY 142
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K KKDPNKPKR SA+ F++++R+ K E+P VGK G KW+ + + KK +
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEA-TFGDVGKLLGIKWREMNENEKKPY 77
>gi|195977121|gb|ACG63669.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 227
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF+F E+R K EH + V K GE W
Sbjct: 91 KDPNAPKRPPSAFFLFCSEYRPKIKGEH--HLSTGDVAKKLGEMW 133
>gi|403217833|emb|CCK72326.1| hypothetical protein KNAG_0J02470 [Kazachstania naganishii CBS
8797]
Length = 92
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
KKDPN PKR SA+ F E R + + E+P+V +G+ GE+WK+L
Sbjct: 14 KKDPNAPKRALSAYMFFANENRDIVRSENPDV-TFGQIGRLLGERWKAL 61
>gi|194885620|ref|XP_001976465.1| GG19998 [Drosophila erecta]
gi|190659652|gb|EDV56865.1| GG19998 [Drosophila erecta]
Length = 724
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
S KKD KPKR +AF ++L + R+ K+++P +K V+ + K GGE WK L D
Sbjct: 545 SKKKDSGKPKRATTAFMLWLNDTRESIKRDNPGIK-VTEIAKKGGEMWKELKD 596
>gi|444716453|gb|ELW57303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 213
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 51 KDPNKPKRPPSAFFVFLEEFR-KVYKQEHPNVKAVSAVGKAGGEKWKSL 98
KDPN PKRPPSAFF+F E+R K+ +EHP + ++ V K E W ++
Sbjct: 77 KDPNAPKRPPSAFFLFCSEYRPKI--REHPGL-SIGDVAKKLEEMWNNI 122
>gi|320585897|gb|EFW98576.1| nucleosome-binding protein [Grosmannia clavigera kw1407]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+ +KKDPN PKR SA+ F E R+ + E+P + + VGK GE+WK+L +
Sbjct: 16 RRSKKDPNAPKRGLSAYMFFANEQRENVRDENPGI-SFGQVGKILGERWKALNE 68
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K KKDPNKPKR SA+ F++++R+ K E+P VGK G KW+ + + KK +
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWREMNENEKKPY 77
>gi|344254860|gb|EGW10964.1| High mobility group protein B1 [Cricetulus griseus]
Length = 186
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K E P + ++ V K GE W
Sbjct: 78 KDPNAPKRRPSAFFLFCSEYRPRIKGERPGL-SIGDVAKKLGEMW 121
>gi|19074377|ref|NP_585883.1| HIGH MOBILITY GROUP PROTEIN [Encephalitozoon cuniculi GB-M1]
gi|449329470|gb|AGE95742.1| high mobility group protein [Encephalitozoon cuniculi]
Length = 201
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
R+K +KDPN PK+P S +F+F +E RK K E + V+ G+A E WK L+D
Sbjct: 30 RSKTAVKRRKDPNAPKKPMSGYFIFGQEQRK--KNEELSRLPVADQGRAISEMWKKLSDE 87
Query: 102 IKKEH 106
++E+
Sbjct: 88 EREEY 92
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KDP KPK+P SAFF+F E R E+ K+V V K GE+WK++T+
Sbjct: 268 KDPLKPKQPLSAFFLFCNERRAALLAEN---KSVLEVAKIAGEEWKNMTE 314
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPNKPK+P S+F +F +E RK E P + S + KWK L +
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGINN-STLTAMISVKWKELNE 441
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 136
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQE--HPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
S KKDPN PKRP + FF+F +E R+ K K+ S V K GE+W LTD+ K +
Sbjct: 7 SKKKDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGKLTDSEKDK 66
Query: 106 H 106
+
Sbjct: 67 Y 67
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
D N PKRP S++ +F + +RK E+P +K V+ V K GEKW + DA K
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDAEK 166
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 136
>gi|118344004|ref|NP_001071827.1| FACT complex subunit SSRP1 [Ciona intestinalis]
gi|110287972|sp|Q4H2R2.1|SSRP1_CIOIN RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Structure-specific recognition protein 1
gi|70571284|dbj|BAE06715.1| transcription factor protein [Ciona intestinalis]
Length = 704
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
VK KKDPN PKRP SA+F++L E R +K E+ + +V+ + K G++WK +
Sbjct: 544 VKRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGI-SVTELTKLAGKEWKKI 595
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD
Sbjct: 89 DPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATD 136
>gi|354485801|ref|XP_003505070.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 198
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+R K E P + ++ V K GE W
Sbjct: 90 KDPNAPKRRPSAFFLFCSEYRPRIKGERPGL-SIGDVAKKLGEMW 133
>gi|7206622|gb|AAF39781.1| SP100-HMG [Homo sapiens]
Length = 181
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
DPN PKRPP AFF+F E+R K EHP + V K G
Sbjct: 67 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 107
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KKDPNKPKR SA+ F++++R+ K E+P VGK G KW+ + + KK +
Sbjct: 21 SKKDPNKPKRALSAYMFFVQDYRERIKAENPEA-TFGDVGKLLGIKWREMNENEKKPY 77
>gi|444729048|gb|ELW69479.1| High mobility group protein B1 [Tupaia chinensis]
Length = 172
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KDPN PKRPPSAFF+F E+R K +HP +
Sbjct: 78 KDPNAPKRPPSAFFLFSSEYRPKIKGDHPGL 108
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune H4-8]
Length = 114
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 37 RSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
+++ K K + AKKDPN PKR SA+ F +++R+ K E+P+ + +GK G KWK
Sbjct: 12 KAATKSEKTPRKAKKDPNAPKRALSAYMFFSQDWRERVKAENPDA-SFGELGKILGAKWK 70
Query: 97 SLTDAIKKEH 106
+ + KK +
Sbjct: 71 EMDEDEKKPY 80
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KD N PKR PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDLNAPKRTPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMW 133
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 43 TKNVKSAKK-DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
TKN K +K DPNKPK+P S++F+F +E RK +EHP + S V KWK L
Sbjct: 360 TKNKKKNEKVDPNKPKKPASSYFLFCKEARKSVLEEHPGINN-STVTAHISLKWKEL 415
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DP KPK P SA+ ++ E R K E+ K+V V K GE+WK+L++ K
Sbjct: 244 DPLKPKHPISAYLIYANERRAALKGEN---KSVIEVAKMTGEEWKNLSEEQK 292
>gi|344245465|gb|EGW01569.1| hypothetical protein I79_003161 [Cricetulus griseus]
Length = 163
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSA F+F E+R K EHP + ++ V K GE W +
Sbjct: 15 KDPNAPKRPPSA-FLFCSEYRPKIKGEHPGL-SIGDVAKKLGELWHT 59
>gi|195025112|ref|XP_001986001.1| GH21124 [Drosophila grimshawi]
gi|193902001|gb|EDW00868.1| GH21124 [Drosophila grimshawi]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKKENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|407035464|gb|EKE37713.1| HMG (high mobility group) box domain containing protein [Entamoeba
nuttalli P19]
Length = 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKD NKPK+P +A+ +F E YK++ P++K +S +GK G +WK L + KK++
Sbjct: 101 KKDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKY 156
>gi|6325309|ref|NP_015377.1| Nhp6ap [Saccharomyces cerevisiae S288c]
gi|128182|sp|P11632.1|NHP6A_YEAST RecName: Full=Non-histone chromosomal protein 6A
gi|24987379|pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb
Protein Nhp6a In Complex With Sry Dna
gi|24987655|pdb|1LWM|A Chain A, Solution Structure Of The Sequence-Non-Specific Hmgb
Protein Nhp6a
gi|4034|emb|CAA33377.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171883|gb|AAA34754.1| high mobility group non-histone protein [Saccharomyces cerevisiae]
gi|805034|emb|CAA89171.1| Nhp6ap [Saccharomyces cerevisiae]
gi|1314122|emb|CAA94998.1| Nhp6ap [Saccharomyces cerevisiae]
gi|51013911|gb|AAT93249.1| YPR052C [Saccharomyces cerevisiae]
gi|285815583|tpg|DAA11475.1| TPA: Nhp6ap [Saccharomyces cerevisiae S288c]
gi|392296063|gb|EIW07166.1| Nhp6ap [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT K+ +
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPY 70
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDP+ PKRPPSAFF+F E+R K E P + + V K GE W
Sbjct: 28 KDPSAPKRPPSAFFLFCSEYRPEIKGERPG-RFIGDVAKRLGEMW 71
>gi|195431784|ref|XP_002063908.1| GK15924 [Drosophila willistoni]
gi|194159993|gb|EDW74894.1| GK15924 [Drosophila willistoni]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARDSIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|194882008|ref|XP_001975105.1| GG22136 [Drosophila erecta]
gi|190658292|gb|EDV55505.1| GG22136 [Drosophila erecta]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
DP+ PKRP SA+ ++L R+ K E+P + +++ + K GE WKS++ KKE W
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKSMSKD-KKEEW 590
>gi|195486377|ref|XP_002091483.1| HmgD [Drosophila yakuba]
gi|38047835|gb|AAR09820.1| similar to Drosophila melanogaster HmgD, partial [Drosophila
yakuba]
gi|194177584|gb|EDW91195.1| HmgD [Drosophila yakuba]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPNKPKRPP+A+F+FL ++R + K + K GE+W+SL++ KK +
Sbjct: 96 DPNKPKRPPTAYFLFLADYRIRMANKGIEHKELL---KMAGEEWRSLSNEDKKPY 147
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KN K KD NKPKR SA+F FL + RK + ++ K EKWK+L+
Sbjct: 10 KNSKKKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALS 65
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPN PKR +A+ +F +E R K +HP V VGK GE W +L D K+++
Sbjct: 6 RKDPNAPKRAMTAYMLFSQEKRTQIKTDHPTV-GFGQVGKLLGEAWAALPDGDKRKY 61
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
K KKDPN PK+P SAFF F ++ R K E+P+ + +GK GE+W L +KE
Sbjct: 96 KRKKKDPNAPKKPCSAFFHFSKKMRPRIKDENPDA-SFGQLGKIIGEQWSKLGADERKE 153
>gi|151942838|gb|EDN61184.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190407991|gb|EDV11256.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256268928|gb|EEU04275.1| Nhp6ap [Saccharomyces cerevisiae JAY291]
gi|259150205|emb|CAY87008.1| Nhp6ap [Saccharomyces cerevisiae EC1118]
gi|349581863|dbj|GAA27020.1| K7_Nhp6ap [Saccharomyces cerevisiae Kyokai no. 7]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALT 63
>gi|67470045|ref|XP_650993.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|56467670|gb|EAL45607.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|449703510|gb|EMD43949.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 384
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKD NKPK+P +A+ +F E YK++ P++K +S +GK G +WK L + KK++
Sbjct: 101 KKDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKY 156
>gi|151301198|ref|NP_001093087.1| mobility group protein 1B [Bombyx mori]
gi|95102634|gb|ABF51255.1| mobility group protein 1B [Bombyx mori]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KPKRP SA+ ++L R+ K E+P ++ V+ + K GGE WKS+ D + E
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDKTEWEQ 54
>gi|432867565|ref|XP_004071245.1| PREDICTED: nucleolar transcription factor 1-like [Oryzias latipes]
Length = 740
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 22 EDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
ED+ KR R+++ TK S AK +P KPKRP SA F+F EE R+ +QE P+
Sbjct: 370 EDKGGFKR-----GGRANSPATKKPASKAKANPEKPKRPISAMFIFAEEKRQKLQQERPD 424
Query: 81 VKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113
+ + S V + W L D K+++ ++ V+
Sbjct: 425 L-SDSEVTRCLARMWNDLPDKKKEKYKRLELVL 456
>gi|401839076|gb|EJT42436.1| NHP6A-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALT 63
>gi|401623234|gb|EJS41340.1| nhp6ap [Saccharomyces arboricola H-6]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALT 63
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+L +
Sbjct: 18 KKDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNE 67
>gi|222619008|gb|EEE55140.1| hypothetical protein OsJ_02931 [Oryza sativa Japonica Group]
Length = 157
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 68 EEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
E+FRK YK+E+P+VK++ VGKA GEKW ++T
Sbjct: 85 EDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 116
>gi|425767422|gb|EKV05996.1| Non-histone chromosomal protein 6 [Penicillium digitatum PHI26]
gi|425779648|gb|EKV17689.1| Non-histone chromosomal protein 6 [Penicillium digitatum Pd1]
Length = 189
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 15 NEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVY 74
N + P E RKA K V+ KKDPN PKR SA+ F + R
Sbjct: 78 NPFIMPKESTTKSTRKAP----------EKRVQRRKKDPNAPKRGLSAYMFFANDNRDKV 127
Query: 75 KQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
++E+P + + VGK G+KWK+L++ +K +
Sbjct: 128 REENPGI-SFGQVGKQLGDKWKALSETDRKPY 158
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
PN PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 168
>gi|6435676|pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALT 63
>gi|195154374|ref|XP_002018097.1| GL17523 [Drosophila persimilis]
gi|390179748|ref|XP_001361671.2| GA14726 [Drosophila pseudoobscura pseudoobscura]
gi|194113893|gb|EDW35936.1| GL17523 [Drosophila persimilis]
gi|388859956|gb|EAL26250.2| GA14726 [Drosophila pseudoobscura pseudoobscura]
Length = 113
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
++PKRP SA+ ++L E R+ K+E+P K V+ + K GGE W+ L D + E +K
Sbjct: 6 DRPKRPLSAYMLWLNETRESIKKENPGSK-VTDIAKRGGELWRGLKDKTEWEQKAIKM 62
>gi|366996751|ref|XP_003678138.1| hypothetical protein NCAS_0I01260 [Naumovozyma castellii CBS
4309]
gi|342304009|emb|CCC71794.1| hypothetical protein NCAS_0I01260 [Naumovozyma castellii CBS
4309]
Length = 94
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDPN PKR S++ F R + + E+P+V VGK GE+WK+LT
Sbjct: 16 KKDPNAPKRALSSYMFFANATRDIVRSENPDV-TFGQVGKLLGERWKALT 64
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
KKDP+ PKR SA+ F E R + + E+P + + VGK GEKWK+++
Sbjct: 13 KKDPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKAMS 61
>gi|194752689|ref|XP_001958652.1| GF12460 [Drosophila ananassae]
gi|190619950|gb|EDV35474.1| GF12460 [Drosophila ananassae]
Length = 728
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
S KK+ +KPKR +AF ++L + R+ K+E+P +K V+ + K GGE WK L D
Sbjct: 547 SKKKESDKPKRATTAFMLWLNDTREKIKKENPGIK-VTEIAKKGGEMWKELKD 598
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRP SAFF F + R +QE P+ +V V K G +W + D +K ++
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNEVGDDVKSKY 145
>gi|444730108|gb|ELW70503.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPP AFF+F E+R+ K E + ++ V K GE W
Sbjct: 16 KDPNAPKRPPLAFFLFCSEYRRKIKGEQSGL-SIGDVAKKLGEMW 59
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDPN PKRP SAFF F + R +QE+P+ +V V K G +W + D +K
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQENPDS-SVGEVAKELGRRWNEVGDDVK 142
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAIKKE-HWMV 109
+KP+ SA+ F++ R+ +K++HPN V A K E+WK+++D KK H M
Sbjct: 5 DKPRGRMSAYAFFVQTCREEHKKKHPNENVVFAEFSKKCAERWKTMSDGEKKRFHQMA 62
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+L +
Sbjct: 18 KKDPNAPKRGLSAYMFFANEQRDNVREENPGI-SFGQVGKVLGERWKALNE 67
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+DPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L D
Sbjct: 2 QDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALND 50
>gi|389626627|ref|XP_003710967.1| non-histone chromosomal protein 6 [Magnaporthe oryzae 70-15]
gi|78192124|gb|ABB30152.1| nonhistone protein 6 [Magnaporthe grisea]
gi|291195731|gb|ADD84582.1| nonhistone chromosomal protein 6B [Magnaporthe oryzae]
gi|351650496|gb|EHA58355.1| non-histone chromosomal protein 6 [Magnaporthe oryzae 70-15]
gi|440463464|gb|ELQ33044.1| nucleosome binding protein [Magnaporthe oryzae Y34]
gi|440481294|gb|ELQ61893.1| nucleosome binding protein [Magnaporthe oryzae P131]
Length = 101
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
AKKDP PKR SA+ F E R ++E+P V VGK GE+WK+L+D
Sbjct: 17 AKKDPMAPKRGLSAYMFFANEQRDNVREENPGV-TFGQVGKILGERWKALSD 67
>gi|367003789|ref|XP_003686628.1| hypothetical protein TPHA_0G03540 [Tetrapisispora phaffii CBS 4417]
gi|357524929|emb|CCE64194.1| hypothetical protein TPHA_0G03540 [Tetrapisispora phaffii CBS 4417]
Length = 452
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 6 GKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFV 65
GK K +N K K V K S S+ R + K KK PKRP SA+F+
Sbjct: 205 GKKGPKGKQNNQATATATGKGAKNKDVKKLS-STQTRIEKRKQLKK--QGPKRPSSAYFL 261
Query: 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
F R QEHP+ K V + K +WK LTD KK
Sbjct: 262 FSMSIRNELLQEHPHAK-VPELSKLASIRWKDLTDEQKK 299
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+F F + R+ + E+PN K ++ + E+W++L D
Sbjct: 107 KKDPNAPKRALSAYFFFCNDIRQEVRDENPN-KKITEIATLLAERWRALPD 156
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKD N PKR SAF F + R+ K+E P + A + G +WK ++D
Sbjct: 19 KKDKNAPKRALSAFMFFSNDIRETVKKEMPEL-AFLQISSEIGRRWKKISD 68
>gi|367012149|ref|XP_003680575.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
gi|359748234|emb|CCE91364.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
Length = 93
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDV-TFGQVGRLLGERWKALT 63
>gi|453086558|gb|EMF14600.1| hypothetical protein SEPMUDRAFT_148265 [Mycosphaerella populorum
SO2202]
Length = 396
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 21/123 (17%)
Query: 7 KGAVKKDKNEVVKPVEDRAAGKRKA-------VLK-ASRSSNKRTKNVKSAKK------- 51
+GA D ++++ P + A + A +L+ AS S + T V + KK
Sbjct: 51 QGAGSFDISQLILPFQGVAGAAQLAEQAIQNGLLQVASHSFDAHTPAVDAKKKEKRPYKP 110
Query: 52 -DPNKPKRPPSAFFVFLEEFRKVYKQE---HPNVKAVSA--VGKAGGEKWKSLTDAIKKE 105
DPN PKRP +A+F +L E R QE P + A + K E+WK++TDA ++
Sbjct: 111 RDPNAPKRPLTAYFRYLREVRPFIAQEVAKSPPSEGTKAGDISKIATERWKAMTDAQRQP 170
Query: 106 HWM 108
+ +
Sbjct: 171 YHL 173
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 45 NVKSAKK--DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
N K KK DP+KPK+P S + + E R+ K+E+P +K ++ + K GEKWK L++
Sbjct: 13 NTKRGKKEVDPDKPKKPLSGYMRYCNEQREQVKKENPELK-LTEISKVLGEKWKELSEEE 71
Query: 103 KK 104
KK
Sbjct: 72 KK 73
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
DPNKPKRP S++ +F + R+ K+++P++ + + G+ WK L
Sbjct: 105 DPNKPKRPLSSYIIFSNDKREEVKRKNPDM-SNKEITTLLGKMWKEL 150
>gi|159162245|pdb|1E7J|A Chain A, Hmg-D Complexed To A Bulge Dna
Length = 74
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|299741148|ref|XP_001834261.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
gi|298404577|gb|EAU87573.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
Length = 184
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 23 DRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK 82
D A KRKA KA ++ R KS KKDP KPKR SA+ F +++R+ K E+P+
Sbjct: 66 DSAKPKRKAAEKAEKAP--RAAASKS-KKDPLKPKRALSAYMFFSQDWRERIKAENPDA- 121
Query: 83 AVSAVGKAGGEKWKSLTDAIKKEH 106
VGK G KWK L + KK +
Sbjct: 122 GFGEVGKLLGAKWKELDEEEKKPY 145
>gi|255087726|ref|XP_002505786.1| histone chaperone [Micromonas sp. RCC299]
gi|226521056|gb|ACO67044.1| histone chaperone [Micromonas sp. RCC299]
Length = 643
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
DPN+PKRP SAF +F +E R +++P+ A+ VGK G +W+ + +KKE
Sbjct: 547 DPNEPKRPLSAFMIFSKETRGDVLEKNPDF-ALGDVGKELGRRWREIDPELKKE 599
>gi|156083745|ref|XP_001609356.1| high mobility group protein-like protein NHP1 [Babesia bovis T2Bo]
gi|730136|sp|P40632.1|NHP1_BABBO RecName: Full=High mobility group protein homolog NHP1
gi|344189439|pdb|2LHJ|A Chain A, Nmr Structure Of The High Mobility Group Protein-Like
Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
gi|155890|gb|AAA27799.1| non-histone protein [Babesia bovis]
gi|154796607|gb|EDO05788.1| high mobility group protein-like protein NHP1 [Babesia bovis]
Length = 97
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGGEKWKSLTDAIKKE 105
+ AKKDPN PKR S++ F +E R E+P + K V+A+GK G W +L+D KK
Sbjct: 14 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 73
Query: 106 H 106
+
Sbjct: 74 Y 74
>gi|167388437|ref|XP_001738566.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898168|gb|EDR25112.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 395
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKD NKPK+P +A+ +F E YK++ P++K +S +GK G +WK L + KK++
Sbjct: 102 KKDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKELPEEQKKKY 157
>gi|6730529|pdb|1QRV|A Chain A, Crystal Structure Of The Complex Of Hmg-D And Dna
gi|6730530|pdb|1QRV|B Chain B, Crystal Structure Of The Complex Of Hmg-D And Dna
Length = 73
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 54
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 24 RAAGKRKAVLKASRSSNKRTK--------NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYK 75
RA GK + + K +S KR K KDPN PKRPPSAFF++ E+ K
Sbjct: 82 RARGKFEDMAKVDKSRYKREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLYFSEYGPKIK 141
Query: 76 QEHPNVKAVSAVGKAGGEKW 95
E P + ++ K GE W
Sbjct: 142 GERPGL-SIGDAAKKLGEMW 160
>gi|289742511|gb|ADD20003.1| high mobility group protein D [Glossina morsitans morsitans]
Length = 110
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P ++ V+ + K GGE W+S+ D K W K
Sbjct: 3 DKPKRPLSAYMLWLSSAREQIKRENPGIR-VTEIAKKGGEIWRSMKD---KSEWEAK 55
>gi|294658818|ref|XP_461149.2| DEHA2F18194p [Debaryomyces hansenii CBS767]
gi|202953408|emb|CAG89532.2| DEHA2F18194p [Debaryomyces hansenii CBS767]
Length = 311
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVF--LEEFRKVYKQEHPNVKAVSAVGKAGGE 93
S S+N RT+ ++ DP+ PKRP +A+ +F +E+ R ++ E N AV+ + K+ E
Sbjct: 129 SGSNNSRTQRIR----DPDLPKRPTNAYLIFCEMEKERIKHELEERNPGAVTELSKSLTE 184
Query: 94 KWKSLTDAIKKEHW 107
WK+L D +K ++
Sbjct: 185 AWKNLDDEKRKPYY 198
>gi|219111369|ref|XP_002177436.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411971|gb|EEC51899.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 147
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K AKKDP+ PKRP SAF F R K++HP +K + V + GE W+S ++ +K H
Sbjct: 78 KRAKKDPSAPKRPMSAFLYFSLGRRSDLKKKHPEIKN-TEVSRLLGEMWRSASEEQRKPH 136
>gi|452839855|gb|EME41794.1| hypothetical protein DOTSEDRAFT_74007 [Dothistroma septosporum
NZE10]
Length = 108
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 28 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAV 87
K KA + S+ + ++ K KKDPN PKR SA+ F E R + ++P +K V
Sbjct: 3 KEKATTRGSKKAVDKSAGGKK-KKDPNMPKRGLSAYMFFANEQRDKVRDDNPGIK-FGEV 60
Query: 88 GKAGGEKWKSLTD 100
GK GEKWK L++
Sbjct: 61 GKQLGEKWKGLSE 73
>gi|159162413|pdb|1HMA|A Chain A, The Solution Structure And Dynamics Of The Dna Binding
Domain Of Hmg-D From Drosophila Melanogaster
Length = 73
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 54
>gi|24657284|ref|NP_726109.1| high mobility group protein D, isoform A [Drosophila melanogaster]
gi|24657287|ref|NP_726110.1| high mobility group protein D, isoform B [Drosophila melanogaster]
gi|281363985|ref|NP_001163244.1| high mobility group protein D, isoform C [Drosophila melanogaster]
gi|195346535|ref|XP_002039813.1| GM15859 [Drosophila sechellia]
gi|195585534|ref|XP_002082536.1| GD11622 [Drosophila simulans]
gi|729733|sp|Q05783.1|HMGD_DROME RecName: Full=High mobility group protein D; Short=HMG-D
gi|157626|gb|AAA28609.1| high mobility group protein [Drosophila melanogaster]
gi|296943|emb|CAA50468.1| Hmg-D protein [Drosophila melanogaster]
gi|7291330|gb|AAF46759.1| high mobility group protein D, isoform A [Drosophila melanogaster]
gi|21392016|gb|AAM48362.1| LD24628p [Drosophila melanogaster]
gi|21645449|gb|AAM71011.1| high mobility group protein D, isoform B [Drosophila melanogaster]
gi|116805826|emb|CAL26283.1| CG17950 [Drosophila melanogaster]
gi|116805828|emb|CAL26284.1| CG17950 [Drosophila melanogaster]
gi|116805830|emb|CAL26285.1| CG17950 [Drosophila melanogaster]
gi|116805832|emb|CAL26286.1| CG17950 [Drosophila melanogaster]
gi|116805834|emb|CAL26287.1| CG17950 [Drosophila melanogaster]
gi|116805836|emb|CAL26288.1| CG17950 [Drosophila melanogaster]
gi|116805838|emb|CAL26289.1| CG17950 [Drosophila melanogaster]
gi|116805840|emb|CAL26290.1| CG17950 [Drosophila melanogaster]
gi|116805842|emb|CAL26291.1| CG17950 [Drosophila melanogaster]
gi|116805844|emb|CAL26292.1| CG17950 [Drosophila melanogaster]
gi|116805846|emb|CAL26293.1| CG17950 [Drosophila melanogaster]
gi|116805848|emb|CAL26294.1| CG17950 [Drosophila simulans]
gi|194135162|gb|EDW56678.1| GM15859 [Drosophila sechellia]
gi|194194545|gb|EDX08121.1| GD11622 [Drosophila simulans]
gi|220943924|gb|ACL84505.1| HmgD-PA [synthetic construct]
gi|220953800|gb|ACL89443.1| HmgD-PA [synthetic construct]
gi|223967235|emb|CAR93348.1| CG17950-PA [Drosophila melanogaster]
gi|223967237|emb|CAR93349.1| CG17950-PA [Drosophila melanogaster]
gi|223967239|emb|CAR93350.1| CG17950-PA [Drosophila melanogaster]
gi|223967241|emb|CAR93351.1| CG17950-PA [Drosophila melanogaster]
gi|223967243|emb|CAR93352.1| CG17950-PA [Drosophila melanogaster]
gi|223967245|emb|CAR93353.1| CG17950-PA [Drosophila melanogaster]
gi|223967247|emb|CAR93354.1| CG17950-PA [Drosophila melanogaster]
gi|223967249|emb|CAR93355.1| CG17950-PA [Drosophila melanogaster]
gi|223967251|emb|CAR93356.1| CG17950-PA [Drosophila melanogaster]
gi|223967253|emb|CAR93357.1| CG17950-PA [Drosophila melanogaster]
gi|223967255|emb|CAR93358.1| CG17950-PA [Drosophila melanogaster]
gi|223967257|emb|CAR93359.1| CG17950-PA [Drosophila melanogaster]
gi|272432624|gb|ACZ94516.1| high mobility group protein D, isoform C [Drosophila melanogaster]
Length = 112
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD 48
>gi|390348241|ref|XP_784026.3| PREDICTED: uncharacterized protein LOC578784 [Strongylocentrotus
purpuratus]
Length = 273
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+DP+KPK+PP+A+F FL +FR+ K + ++ + + GE+W LTD KK +
Sbjct: 104 RDPDKPKKPPTAYFYFLTDFREQMKGK--TIEKGRRLTEICGEEWNKLTDEQKKPY 157
>gi|195382097|ref|XP_002049768.1| GJ21774 [Drosophila virilis]
gi|194144565|gb|EDW60961.1| GJ21774 [Drosophila virilis]
Length = 729
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
D NKPKR +AF ++L + R+ K+++P +K V+ + K GGE WK L D
Sbjct: 555 DSNKPKRATTAFMLWLNDTREQIKRDNPGIK-VTEIAKKGGEMWKELKD 602
>gi|254580675|ref|XP_002496323.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
gi|238939214|emb|CAR27390.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
Length = 98
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKR SA+ F E R + + E+P+V VG+ GEKWK+LT
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRAENPDV-TFGQVGRILGEKWKALT 63
>gi|403267258|ref|XP_003925761.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Saimiri boliviensis boliviensis]
Length = 227
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DP+ PKRPPS FF+F EF K +P + ++ V K GE+ +L+D+ K+
Sbjct: 139 DPDAPKRPPSGFFLFCSEFCPKIKSTNPGI-SIGDVAKRLGERRNNLSDSGKR 190
>gi|357608069|gb|EHJ65806.1| hypothetical protein KGM_13851 [Danaus plexippus]
Length = 719
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
D N PKRP +AF ++L E RK ++P +K V+ + K GGE W+ L D
Sbjct: 543 DVNAPKRPSTAFMLWLSEHRKGIIDDNPGIK-VTEIAKKGGELWRDLKD 590
>gi|403222987|dbj|BAM41118.1| high-mobility-group protein [Theileria orientalis strain Shintoku]
Length = 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 40 NKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGGEKWKSL 98
+K K K KKDPN PKR S++ F +E R +E+P++ K V+ VGK G W SL
Sbjct: 6 SKSAKKGKRTKKDPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGAAWNSL 65
Query: 99 TDAIK 103
D+ K
Sbjct: 66 DDSEK 70
>gi|451996730|gb|EMD89196.1| hypothetical protein COCHEDRAFT_1107529 [Cochliobolus
heterostrophus C5]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PKR SA+ F E R+ ++++P +K VGK GEKWK+L D
Sbjct: 23 DPNAPKRGLSAYMFFANEQREKVREDNPGIK-FGEVGKLLGEKWKALND 70
>gi|444706070|gb|ELW47432.1| High mobility group protein B1 [Tupaia chinensis]
Length = 138
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAF +F E+R K EHP + + V K GE W
Sbjct: 15 KDPNAPKRLPSAFLLFCFEYRPKIKGEHPGL-TIGDVAKKLGEMW 58
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 39 SNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
S+KR + KDPN P RP SA+F++ E R+ + +V+ V KAGGE W+++
Sbjct: 578 SSKRQTKKQEKPKDPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRNM 637
Query: 99 TDAIKKEH 106
K +
Sbjct: 638 DSETKSTY 645
>gi|297706944|ref|XP_002830283.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pongo abelii]
Length = 125
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
K K PN PKRP S FF+F EF K +P + ++ V K GE W +L D+ K+
Sbjct: 19 AKGGKNHPNAPKRPLSGFFLFCSEFCPKIKSTNPGI-SIGDVVKKLGEMWNNLNDSEKQP 77
Query: 106 H 106
+
Sbjct: 78 Y 78
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN P RPP+A+ ++ E R + N +V+ V KA GE+W+++ K ++
Sbjct: 574 KDPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNIDSETKAKY 629
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDP PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D
Sbjct: 17 GKKDPLAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSD 67
>gi|195123263|ref|XP_002006127.1| GI18728 [Drosophila mojavensis]
gi|193911195|gb|EDW10062.1| GI18728 [Drosophila mojavensis]
Length = 112
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSAREGIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|320168039|gb|EFW44938.1| hypothetical protein CAOG_02944 [Capsaspora owczarzaki ATCC 30864]
Length = 193
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRPPSA+ F R ++ +P+ + A+ GE W+ LTD K+ +
Sbjct: 97 KDPNAPKRPPSAYICFANAVRPELRKTYPS-DTMPAISTKIGELWRQLTDDNKEPY 151
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDPNKPK+P +AF F R+ K ++P +K ++ + G+ W L +A K ++
Sbjct: 9 EKDPNKPKKPTTAFMYFSNAMRERVKTQNPGLK-MTDIASVLGKLWGQLPEADKDKY 64
>gi|194755948|ref|XP_001960241.1| GF13265 [Drosophila ananassae]
gi|190621539|gb|EDV37063.1| GF13265 [Drosophila ananassae]
Length = 111
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KPKRP SA+ ++L R K+E+P +K V+ V K GGE W+++ D
Sbjct: 3 DKPKRPLSAYMLWLNSARDSIKRENPGIK-VTEVAKKGGELWRAMKD 48
>gi|213405987|ref|XP_002173765.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
gi|212001812|gb|EEB07472.1| mismatch-binding protein cmb1 [Schizosaccharomyces japonicus
yFS275]
Length = 316
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRK--VYKQE--HPNVKAVSAVGKAGGEKWKSLTDAIK 103
KDP++PK+P S+F F ++ R+ +KQ+ P V +++ K GE WKSL+D IK
Sbjct: 152 KDPSEPKKPLSSFLYFTQKLRQDPEFKQKLMGPAVYSITEFSKKAGEVWKSLSDDIK 208
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105
DPN PKRP SA+F++ R+ K++ P++ +++ + K GE WK + D K E
Sbjct: 556 DPNAPKRPQSAYFLWFNANREELKKDTPDI-SITDLSKKAGEVWKQMEDTDKTE 608
>gi|326499588|dbj|BAJ86105.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DP+KPK+P SA+F++ +E R E K V +GK GE+WK +T+A K
Sbjct: 330 DPSKPKQPMSAYFLYSQERRGALVAEK---KTVPEIGKITGEEWKGMTEAQK 378
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DPN+PK+P S+F +F +E RK +E P V S + KWK L+ A KK
Sbjct: 455 DPNRPKKPASSFLLFSKEARKQLAEERPGVNN-STLSALISVKWKDLSSAEKK 506
>gi|195381983|ref|XP_002049712.1| GJ20604 [Drosophila virilis]
gi|194144509|gb|EDW60905.1| GJ20604 [Drosophila virilis]
Length = 111
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
++PKRP SA+ ++L E R+ K+E+P K V+ + K GGE W+ L D + E +K
Sbjct: 4 DRPKRPLSAYMLWLNENREQIKKENPGSK-VTDIAKRGGELWRGLKDKTEWEQKAIKM 60
>gi|392574245|gb|EIW67382.1| hypothetical protein TREMEDRAFT_74569 [Tremella mesenterica DSM
1558]
Length = 351
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
+DPN PKRPPSA+ +F E R ++ +P + +G +KWK L+D K+
Sbjct: 130 RDPNAPKRPPSAYIMFQNEVRDQMRKTNPEIAYKEVLGMI-SQKWKDLSDEQKR 182
>gi|729730|sp|P40623.1|HMG1B_CHITE RecName: Full=Mobility group protein 1B
gi|156589|gb|AAA21713.1| high mobility group protein 1b [Chironomus tentans]
Length = 110
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P+ K V+ V K GGE W+ L D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPDFK-VTEVAKKGGELWRGLKD---KSEWEAK 55
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
DPN PKRPPSAFF+F E R + EH + ++ K GE W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEHSGL-SIGDTAKKLGEMW 133
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
T K ++DPN PK+P +AFF+F +++R+ + +P +K ++ + + G KW S+++
Sbjct: 39 TTTEKKKERDPNAPKKPLTAFFLFNQKYRQKVVERNPEIK-LTQISQMAGNKWTSMSEQE 97
Query: 103 KK 104
KK
Sbjct: 98 KK 99
>gi|410955200|ref|XP_003984245.1| PREDICTED: high mobility group protein B2-like [Felis catus]
Length = 329
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + + + K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-PIGDIAKKLGEMW 133
>gi|440911425|gb|ELR61099.1| High mobility group protein B3, partial [Bos grunniens mutus]
Length = 192
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDP PKR PS +F EF K HP + ++ V K GE W +L+D+ K+ +
Sbjct: 88 KKDPKAPKRLPSGCLLFCSEFHPKIKSTHPGI-SIRDVAKKLGEMWNNLSDSEKQPY 143
>gi|255073265|ref|XP_002500307.1| set domain protein [Micromonas sp. RCC299]
gi|226515569|gb|ACO61565.1| set domain protein [Micromonas sp. RCC299]
Length = 1496
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 57 KRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTD 100
KRP +AFF+F +E R + ++ P ++ +SAVGK GE+W+ L+D
Sbjct: 674 KRPMTAFFIFSQEQRALLIEQRPELRTNISAVGKLMGERWRKLSD 718
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRP SAFF F + R +QE P+ +V V K G +W + D K ++
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNDVGDDTKSKY 145
>gi|296418046|ref|XP_002838655.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634611|emb|CAZ82846.1| unnamed protein product [Tuber melanosporum]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F E R+ + ++P + A VGK GE+WK+L++
Sbjct: 17 KKDPNAPKRGLSAYMFFANEQRENVRNDNPGI-AFGQVGKVLGERWKALSE 66
>gi|384501419|gb|EIE91910.1| hypothetical protein RO3G_16621 [Rhizopus delemar RA 99-880]
Length = 183
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 33 LKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGG 92
+K R SN N K K+DPN PK P + FF++ R K E PN +++ V + G
Sbjct: 34 VKPGRKSNNPAANKK--KRDPNAPKGPGNVFFLYCRMERDNIKDEVPN-ESLGEVTRLLG 90
Query: 93 EKWKSLTDAIKKEHWMV 109
+KWK+LT K++++ +
Sbjct: 91 QKWKALTKEEKQKYYDI 107
>gi|355766483|gb|EHH62519.1| hypothetical protein EGM_20887 [Macaca fascicularis]
Length = 198
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
D N PKRPPS FF+F +F K +P + ++ + K GE WK+L D+ K+ +
Sbjct: 76 DSNAPKRPPSGFFLFSSKFCPKMKSTNPGI-SIGDMVKKLGEMWKNLNDSEKQPY 129
>gi|241952671|ref|XP_002419057.1| HMG-like DNA binding protein, putative; high mobility group
protein, putative; non-histone DNA-binding protein,
putative [Candida dubliniensis CD36]
gi|223642397|emb|CAX42640.1| HMG-like DNA binding protein, putative [Candida dubliniensis CD36]
Length = 312
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
+DP+ PKRP +A+ +F E ++ KQ+ PN S + K+ E WKSL++ ++ ++
Sbjct: 143 RDPDLPKRPTNAYLIFCEMEKERIKQDDPN---ASDLSKSMTEAWKSLSEERRRPYY 196
>gi|219116576|ref|XP_002179083.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409850|gb|EEC49781.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PK+ ++FF FL E R KQE+P++ + +GK GE +++L+ K+++
Sbjct: 1 KDPNAPKKAMTSFFYFLNEMRPKIKQENPDM-SFGELGKKAGELFRALSTNQKEKY 55
>gi|440896783|gb|ELR48616.1| High mobility group protein B1, partial [Bos grunniens mutus]
Length = 165
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDP+ PKR PSAFF+F E+ K +HP + ++ V K GE W
Sbjct: 80 KDPSTPKRDPSAFFLFCSEYCPKVKHDHPGL-SIGDVAKKLGETW 123
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W + T A K+
Sbjct: 91 DPYAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKASGKMWSATTGAEKQ 142
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 36 SRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
++SS ++TK K K DPN P RP SA+F++ E R+ + +V+ V KAGGE W
Sbjct: 110 TKSSKRQTKKQKKPK-DPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELW 168
Query: 96 KSLTDAIK 103
+++ K
Sbjct: 169 RNMDSETK 176
>gi|358060355|dbj|GAA93760.1| hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324]
Length = 119
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRP SA+ + ++ R K+++P+ + +GK G +WK L ++ KK++
Sbjct: 42 KDPNAPKRPLSAYMFYSQDKRTQVKEDNPDA-SFGELGKILGAQWKDLDESEKKQY 96
>gi|351705938|gb|EHB08857.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 176
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPS FF+F E+ K EHP + ++ V K E W +
Sbjct: 28 KDPNAPKRPPSTFFLFCSEYCPKIKGEHPGL-SIGDVAKKLEEMWNN 73
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSAFF++ E+ K E P + + V K GE W
Sbjct: 39 KDPNAPKRPPSAFFLYFSEYGPKIKGERPGL-SFGDVAKKLGEMW 82
>gi|402220154|gb|EJU00226.1| Non-histone chromosomal protein 6 [Dacryopinax sp. DJM-731 SS1]
Length = 97
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+ +KKD + PKR SA+ +F E+R K E+P+ + VG+ G KWK L D KKE+
Sbjct: 15 RGSKKDKDAPKRGLSAYLIFSNEWRDRVKAENPDA-SFGDVGRLLGAKWKELPDEEKKEY 73
>gi|392563521|gb|EIW56700.1| HMG-box [Trametes versicolor FP-101664 SS1]
gi|392563525|gb|EIW56704.1| HMG-box [Trametes versicolor FP-101664 SS1]
gi|392563535|gb|EIW56714.1| HMG-box [Trametes versicolor FP-101664 SS1]
Length = 116
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 37 RSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
R++ K+ K K+ KKDP PKR SA+ F +++R+ K E+P+ +GK G KW
Sbjct: 12 RAATKQDKAPKAKGKKDPKAPKRALSAYMFFSQDWRERIKAENPDA-GFGEIGKLLGAKW 70
Query: 96 KSLTDAIKKEH 106
K L D KK +
Sbjct: 71 KELDDDEKKPY 81
>gi|312385331|gb|EFR29858.1| hypothetical protein AND_00899 [Anopheles darlingi]
Length = 174
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 28 KRKAVLKASRSSN--KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
+R+ K +R S+ +R+++ + +KPKRP SA+ ++L R+ K+E+P +K V+
Sbjct: 37 RRRPRAKQARPSDAIRRSRHSPNPMPGSSKPKRPLSAYMLWLNSAREQIKKENPGIK-VT 95
Query: 86 AVGKAGGEKWKSLTDAIKKEHWMVK 110
+ K GGE W+ + D K W K
Sbjct: 96 EIAKKGGELWRGMKD---KSEWEFK 117
>gi|444726553|gb|ELW67082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN +R PSAFF+F E+R K EHP + ++ V K GE W
Sbjct: 39 KDPNASQRSPSAFFLFSSEYRPKIKGEHPGL-SIGDVAKKLGEMW 82
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRP SAFF F + R +QE P+ +V V K G +W + D K ++
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDA-SVGEVAKELGRRWNDVGDDTKSKY 145
>gi|392558113|gb|EIW51341.1| hypothetical protein TRAVEDRAFT_80819, partial [Trametes versicolor
FP-101664 SS1]
Length = 91
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 37 RSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
R++ K+ K K+ KKDP PKR SA+ F +++R+ K E+P+ +GK G KW
Sbjct: 3 RAATKQDKAPKAKGKKDPKAPKRALSAYMFFSQDWRERIKAENPDA-GFGEIGKLLGAKW 61
Query: 96 KSLTDAIKKEH 106
K L D KK +
Sbjct: 62 KELDDDEKKPY 72
>gi|344248925|gb|EGW05029.1| hypothetical protein I79_015964 [Cricetulus griseus]
Length = 164
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN PKRPPSA F+F E+R K EHP + ++ V K GE W +
Sbjct: 40 KDPNAPKRPPSA-FLFCSEYRPKTKGEHPGL-SLGDVAKKLGEMWNN 84
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DPN PK+P S++ ++L+E R K++HP + +++ + K G+ WK L D
Sbjct: 277 DPNCPKKPLSSYMLWLQEMRPSLKKKHPEL-SITEMSKKAGQLWKELKD 324
>gi|413923415|gb|AFW63347.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 95
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 67 LEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
+ EFR+ Y+ +HP K+V+AV KA GEKW+S+++ K+
Sbjct: 1 MSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQ 38
>gi|357608070|gb|EHJ65807.1| mobility group protein 1B [Danaus plexippus]
Length = 180
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K +KPKRP SA+ ++L R+ K E+P +K V+ + K GGE W+S+ D
Sbjct: 60 KMTDKPKRPMSAYMLWLNSAREQIKSENPGLK-VTEIAKKGGEIWRSMKD 108
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK-- 104
K AKKDPNKPK SA+ F ++ R + +++P+ K ++ V K G W+ ++DA KK
Sbjct: 29 KRAKKDPNKPKNAQSAYMFFSQKVRPQFSKDNPD-KKMTDVSKLIGAAWREMSDAAKKPY 87
Query: 105 -----------EHWMVKFVICTT 116
+H M +V T
Sbjct: 88 EEMARRDKQRYQHQMATYVPPPT 110
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
+KDP+ PK+P +A+F++ + R + ++ N V+ + K G +WK L+DA+KK +
Sbjct: 120 RKDPDAPKKPLTAYFLYAADRRAALRAQNRNA-TVADIAKIIGAEWKDLSDAVKKPY 175
>gi|195154370|ref|XP_002018095.1| GL16947 [Drosophila persimilis]
gi|194113891|gb|EDW35934.1| GL16947 [Drosophila persimilis]
Length = 111
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E P +K V+ V K GGE W+++ D K W K
Sbjct: 3 DKPKRPLSAYMLWLNSAREGIKRESPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 55
>gi|345807806|ref|XP_003435667.1| PREDICTED: high mobility group protein B1-like [Canis lupus
familiaris]
Length = 135
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
KDPN KRPPS FF+F E+R K E+P + ++ V K GE W +
Sbjct: 16 KDPNALKRPPSFFFLFCSEYRPKIKGEYPGL-SIGDVAKNLGEMWNN 61
>gi|15236607|ref|NP_194111.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266376|sp|Q9SUP7.1|HMGB6_ARATH RecName: Full=High mobility group B protein 6; AltName:
Full=Nucleosome/chromatin assembly factor group D 06;
Short=Nucleosome/chromatin assembly factor group D 6;
AltName: Full=WRKY transcription factor 53;
Short=AtWRKY53; Short=WRKY DNA-binding protein 53
gi|4454049|emb|CAA23046.1| 98b like protein [Arabidopsis thaliana]
gi|7269229|emb|CAB81298.1| 98b like protein [Arabidopsis thaliana]
gi|18377799|gb|AAL67049.1| putative 98b protein [Arabidopsis thaliana]
gi|20465867|gb|AAM20038.1| putative 98b protein [Arabidopsis thaliana]
gi|22022506|gb|AAM83212.1| putative 98b protein [Arabidopsis thaliana]
gi|332659407|gb|AEE84807.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 456
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP KPK P SAF V+ E R ++E+ K+V V K GE+WK+L+D
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREEN---KSVVEVAKITGEEWKNLSD 296
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAVGKAGGEKWKSLTDAIKK 104
DPNKPK+P S++F+F ++ RK +E P N V+A+ KWK L++ K+
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISL---KWKELSEEEKQ 426
>gi|334186863|ref|NP_001190816.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|332659408|gb|AEE84808.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 450
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP KPK P SAF V+ E R ++E+ K+V V K GE+WK+L+D
Sbjct: 251 DPLKPKHPVSAFLVYANERRAALREEN---KSVVEVAKITGEEWKNLSD 296
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHP--NVKAVSAVGK 89
+LK ++ K K+ DPNKPK+P S++F+F ++ RK +E P N V+A+
Sbjct: 349 MLKKKEKTDNLIKKKKNENVDPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALIS 408
Query: 90 AGGEKWKSLTDAIKK 104
KWK L++ K+
Sbjct: 409 L---KWKELSEEEKQ 420
>gi|307568341|pdb|3NM9|A Chain A, Hmgd(M13a)-Dna Complex
gi|307568342|pdb|3NM9|D Chain D, Hmgd(M13a)-Dna Complex
gi|307568343|pdb|3NM9|G Chain G, Hmgd(M13a)-Dna Complex
gi|307568344|pdb|3NM9|J Chain J, Hmgd(M13a)-Dna Complex
gi|307568345|pdb|3NM9|M Chain M, Hmgd(M13a)-Dna Complex
gi|307568346|pdb|3NM9|P Chain P, Hmgd(M13a)-Dna Complex
Length = 73
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110
+KPKRP SA+ ++L R+ K+E+P +K V+ V K GGE W+++ D K W K
Sbjct: 2 DKPKRPLSAYALWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEWEAK 54
>gi|392883890|gb|AFM90777.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
N P+RPPSAFF+F + R + E+P + ++ V K GE W LT KK +
Sbjct: 92 NAPRRPPSAFFIFCSDHRPRIRGENPGI-SIGDVAKKMGELWSGLTAKDKKPY 143
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 21 VEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN 80
ED A + + ++ R K KDPN PKRP SAFF+F E+ K EHP
Sbjct: 102 FEDMAKADKAPYEREMKTYILRKGETKKKFKDPNAPKRPLSAFFLFCSEYCPKSKGEHPG 161
Query: 81 VKAVSAVGKAGGEKW 95
+ ++ V K G W
Sbjct: 162 L-SIGEVAKKLGVMW 175
>gi|325181980|emb|CCA16434.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 204
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
KKDP+ PKR SA+F F E R +QE+P+ K ++ + EKW++L
Sbjct: 107 KKDPDAPKRALSAYFFFCNEARDALRQENPD-KKITEIASLLAEKWRNL 154
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 35 ASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV-KAVSAVGKAGGE 93
AS+ + K K AKKDPN PKR S++ F +E R +++P++ + V+AVGK G
Sbjct: 2 ASKVAKSAGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRDNPDLARDVAAVGKLVGA 61
Query: 94 KWKSLTDAIK 103
W SL ++ K
Sbjct: 62 AWNSLDESEK 71
>gi|194666188|ref|XP_875720.3| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|297473608|ref|XP_002686711.1| PREDICTED: high mobility group protein B2 [Bos taurus]
gi|296488702|tpg|DAA30815.1| TPA: high-mobility group box 2-like [Bos taurus]
Length = 283
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 167 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 207
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV---SAVGKAGGEKWKSLTDAIKK 104
KDPNKPKR +A+F FL +FR E KA+ + GEKW+S+TD KK
Sbjct: 101 KDPNKPKRCQTAYFFFLHDFR-----EQMKGKALLEGEKIPALAGEKWRSMTDDEKK 152
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN P RPPS F +F EF K +P + ++ V K E W +L+ + K+ +
Sbjct: 110 KKDPNAPTRPPSGFCLFCSEFHPKIKSTNPGI-SIGDVAKKLSEMWSNLSGSEKQPY 165
>gi|157128637|ref|XP_001655167.1| hypothetical protein AaeL_AAEL002381 [Aedes aegypti]
gi|108882231|gb|EAT46456.1| AAEL002381-PA [Aedes aegypti]
Length = 67
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KPKRP SA+ ++L R+ K+E+P +K V+ + K GGE W+++ D
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKRGGELWRAMKD 48
>gi|157831385|pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157831386|pdb|1HSN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 79
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
PKRPPSAFF+F E+R K EHP + ++ V K GE W +
Sbjct: 3 PKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNN 43
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PK+P A+ F ++ R+ K E+P + +V+ +GK GE WK +++ KK++
Sbjct: 19 KDPNAPKKPLGAYMWFCKDMRERVKAENPGM-SVTDIGKRLGELWKEVSEEDKKKY 73
>gi|195025098|ref|XP_001985998.1| GH20784 [Drosophila grimshawi]
gi|193901998|gb|EDW00865.1| GH20784 [Drosophila grimshawi]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
+PKRP SA+ ++L E R+ K+E+P K V+ + K GGE W+ L D + E +K
Sbjct: 5 RPKRPLSAYMLWLNENRESIKKENPGSK-VTDIAKRGGELWRGLKDKTEWEQKAIKM 60
>gi|444716280|gb|ELW57133.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKR P AFF+F E+ K E+P++ ++ + K GE W + K+ H
Sbjct: 28 KDPNTPKRTPRAFFLFCFEYHPKIKGEYPDL-SIGDIAKKLGEMWNNTAADDKQPH 82
>gi|444510699|gb|ELV09703.1| High mobility group protein B2 [Tupaia chinensis]
Length = 233
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 23/43 (53%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
PN PKRPPSAFF+F E K EHP + K GE W
Sbjct: 92 PNVPKRPPSAFFLFCSEHHPKIKSEHPGLSIGDTEKKKLGEMW 134
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
AKKDPN PKRP +AFF+F + R K+ P VS V K G WK + DA KE +
Sbjct: 4 AKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEV-DAKTKEKY 61
>gi|303389712|ref|XP_003073088.1| high mobility group protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302232|gb|ADM11728.1| high mobility group protein [Encephalitozoon intestinalis ATCC
50506]
Length = 181
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
R+K +KDPN PK+P S +F+F +E RK K E + V+ G++ E WK L+D
Sbjct: 10 RSKAAVKKRKDPNAPKKPMSGYFIFGQEQRK--KNEELSKLPVADQGRSISEMWKKLSDE 67
Query: 102 IKKEH 106
++E+
Sbjct: 68 EREEY 72
>gi|403295709|ref|XP_003938773.1| PREDICTED: high mobility group protein B2 [Saimiri boliviensis
boliviensis]
Length = 158
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 82
>gi|50421411|ref|XP_459256.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
gi|74631679|sp|Q6BRB4.1|NHP6_DEBHA RecName: Full=Non-histone chromosomal protein 6
gi|49654923|emb|CAG87430.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
Length = 92
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DP+ PKR SA+ F E R + + E+P + + VGK GEKWK+LT
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGI-SFGQVGKLLGEKWKALT 61
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DP P+RPPS+F +F ++ K+E+PN V V KA G+ W T+A K+ +
Sbjct: 89 DPQAPRRPPSSFLLFCKDHYAQLKRENPNWSVVQ-VAKASGKMWSLSTNAEKQPY 142
>gi|195123269|ref|XP_002006130.1| GI20867 [Drosophila mojavensis]
gi|193911198|gb|EDW10065.1| GI20867 [Drosophila mojavensis]
Length = 111
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
+PKRP SA+ ++L E R+ K+E+P K V+ + K GGE W+ L D + E +K
Sbjct: 5 RPKRPLSAYMLWLNENREQIKKENPGSK-VTDIAKRGGELWRGLKDKTEWEQKAIKM 60
>gi|27466905|gb|AAO12859.1| high mobility group protein [Branchiostoma belcheri tsingtauense]
Length = 164
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K KKDPN PKR SAFF++ + R + HP+ + V + K G++WK ++D+ K ++
Sbjct: 89 KRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQWKEISDSDKAKY 147
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV-SAVGKAGGEKWKSLTDAIKK 104
KD NKPK SA+ F++E R+ +++++PN + V + + +WK++ D KK
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKK 57
>gi|156837480|ref|XP_001642765.1| hypothetical protein Kpol_348p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113330|gb|EDO14907.1| hypothetical protein Kpol_348p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 389
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 26 AGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVS 85
+GK K + S+ +T+ K + PKRP SA+F+F R QEHP+ K V
Sbjct: 211 SGKGKNANPTKKLSSTQTRIEKRKQLKKQGPKRPSSAYFLFSMSIRNELLQEHPHAK-VP 269
Query: 86 AVGKAGGEKWKSLTDAIKKEHW 107
+ K +WK LTD KK ++
Sbjct: 270 ELSKLASIRWKELTDDQKKPYY 291
>gi|389611269|dbj|BAM19246.1| high mobility group protein D [Papilio polytes]
Length = 120
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KPKRP SA+ ++L R+ K ++P +K V+ + K GGE W+S+ D
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLK-VTEIAKKGGEIWRSMED 48
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHW 107
KDPN PKRP SA+ ++L R + E P + +V+ V K GE WK+++ KKE W
Sbjct: 540 KDPNAPKRPLSAYMLWLNANRDKIRSESPGM-SVTDVSKKAGELWKAMSKE-KKEEW 594
>gi|444732691|gb|ELW72967.1| High mobility group protein B1 [Tupaia chinensis]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNV 81
KD N PKRPPSAFF+F E+R K EHP +
Sbjct: 38 KDSNAPKRPPSAFFLFCSEYRPKIKGEHPGL 68
>gi|392351997|ref|XP_003751090.1| PREDICTED: high mobility group protein B2-like, partial [Rattus
norvegicus]
Length = 154
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|344235655|gb|EGV91758.1| High mobility group protein B2 [Cricetulus griseus]
Length = 159
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 42 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 82
>gi|325303836|tpg|DAA34592.1| TPA_exp: putative HMG-like protein [Amblyomma variegatum]
Length = 145
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKRP SAFF F + R +QE+P+ +V V K G +W D ++ ++
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQENPDA-SVGEVAKELGRRWNEGGDDVQSKY 145
>gi|109469081|ref|XP_001074673.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346414|ref|XP_002726304.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392346830|ref|XP_003749644.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKRPPSA F+F E+R K EHP + ++ V K GE W
Sbjct: 90 KDPNAPKRPPSA-FLFCSEYRPKIKGEHPAL-SIGDVTKKLGEVW 132
>gi|426251515|ref|XP_004019467.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|426230076|ref|XP_004009107.1| PREDICTED: high mobility group protein B2-like [Ovis aries]
Length = 209
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|291413749|ref|XP_002723129.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 219
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|24657271|ref|NP_726106.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|24657274|ref|NP_726107.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|194882002|ref|XP_001975102.1| GG20749 [Drosophila erecta]
gi|195346531|ref|XP_002039811.1| GM15692 [Drosophila sechellia]
gi|195486382|ref|XP_002091485.1| HmgZ [Drosophila yakuba]
gi|195585528|ref|XP_002082533.1| GD25171 [Drosophila simulans]
gi|729741|sp|Q06943.1|HMGZ_DROME RecName: Full=High mobility group protein Z; Short=HMG-Z
gi|296945|emb|CAA50469.1| Hmg-Z protein [Drosophila melanogaster]
gi|7291329|gb|AAF46758.1| HMG protein Z, isoform A [Drosophila melanogaster]
gi|21064429|gb|AAM29444.1| RE28596p [Drosophila melanogaster]
gi|21645314|gb|AAM70934.1| HMG protein Z, isoform B [Drosophila melanogaster]
gi|190658289|gb|EDV55502.1| GG20749 [Drosophila erecta]
gi|194135160|gb|EDW56676.1| GM15692 [Drosophila sechellia]
gi|194177586|gb|EDW91197.1| HmgZ [Drosophila yakuba]
gi|194194542|gb|EDX08118.1| GD25171 [Drosophila simulans]
gi|220948296|gb|ACL86691.1| HmgZ-PA [synthetic construct]
Length = 111
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
++PKRP SA+ ++L E R+ K+++P K V+ + K GGE W+ L D + E +K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKDKTEWEQKAIKM 60
>gi|38047781|gb|AAR09793.1| similar to Drosophila melanogaster HmgZ, partial [Drosophila
yakuba]
Length = 104
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111
++PKRP SA+ ++L E R+ K+++P K V+ + K GGE W+ L D + E +K
Sbjct: 4 DRPKRPLSAYMLWLNETREQIKKDNPGSK-VTDIAKRGGELWRGLKDKTEWEQKAIKM 60
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 29 RKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVG 88
+KA KA +S K + +KDPN PKRP SA+ F + R K+ P++ ++ VG
Sbjct: 4 KKAAEKAGKSPKKAPAKKEKKEKDPNAPKRPLSAYMYFASDKRVEMKKSDPSL-SLGEVG 62
Query: 89 KAGGEKWKSLTD 100
KA G WK L+D
Sbjct: 63 KATGAAWKELSD 74
>gi|303289076|ref|XP_003063826.1| histone chaperone [Micromonas pusilla CCMP1545]
gi|226454894|gb|EEH52199.1| histone chaperone [Micromonas pusilla CCMP1545]
Length = 657
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRP S++ +F E R +E P + ++ +GKA G KWK +T
Sbjct: 553 DPNAPKRPLSSYMIFAGENRGKLVEETPGM-SIGEIGKALGAKWKEMT 599
>gi|356523473|ref|XP_003530363.1| PREDICTED: high mobility group B protein 13-like isoform 2 [Glycine
max]
Length = 467
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
+LK + KN DPN+PK+P S+F +F +E RK ++E P + + S +
Sbjct: 361 LLKKKEKTENIIKNKDDKNSDPNRPKKPASSFILFSKEARKTLQEERPGI-STSTLNALV 419
Query: 92 GEKWKSLTD 100
KWK L++
Sbjct: 420 SLKWKELSE 428
>gi|194208319|ref|XP_001498869.2| PREDICTED: high mobility group protein B2-like [Equus caballus]
Length = 210
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|417397133|gb|JAA45600.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 208
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLT 99
AK DPNKP+ S++ F++ R+ +K++HP+ S K E+WK+++
Sbjct: 2 AKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFSEFSKKCSERWKTMS 53
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DPN PKRPPSAFF+F E R K + P + ++ K GE W T
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTPGL-SIGDTAKKLGELWSEQT 138
>gi|149060359|gb|EDM11073.1| rCG63620 [Rattus norvegicus]
Length = 198
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 81 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 121
>gi|32335|emb|CAA78938.1| HMG2B [Homo sapiens]
Length = 186
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 70 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 110
>gi|351704050|gb|EHB06969.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 156
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F ++R K EHP + + K GE W
Sbjct: 43 NAPKRPPSAFFLFCSKYRPKIKSEHPGL-STGDTAKKSGEMW 83
>gi|47522942|ref|NP_999228.1| high mobility group protein B2 [Sus scrofa]
gi|123375|sp|P17741.2|HMGB2_PIG RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|164492|gb|AAA31051.1| non-histone protein HMG2 precursor [Sus scrofa]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|157129265|ref|XP_001655340.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129267|ref|XP_001655341.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129269|ref|XP_001655342.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|157129271|ref|XP_001655343.1| high mobility group non-histone protein, putative [Aedes aegypti]
gi|94468770|gb|ABF18234.1| nucleosome-binding factor SPN POB3 subunit [Aedes aegypti]
gi|108872275|gb|EAT36500.1| AAEL011414-PC [Aedes aegypti]
gi|108872276|gb|EAT36501.1| AAEL011414-PD [Aedes aegypti]
gi|108872277|gb|EAT36502.1| AAEL011414-PA [Aedes aegypti]
gi|108872278|gb|EAT36503.1| AAEL011414-PB [Aedes aegypti]
Length = 112
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KPKRP SA+ ++L R+ K+E+P +K V+ + K GGE W+++ D
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKRGGELWRAMKD 48
>gi|431918327|gb|ELK17554.1| High mobility group protein B2 [Pteropus alecto]
Length = 209
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN KRP S FF+F EFR K +P + ++ + K GE W + +D
Sbjct: 106 KKDPNALKRPLSGFFLFCSEFRPKIKSTNPGI-SIGDMAKKLGEMWINYSD 155
>gi|426220609|ref|XP_004004507.1| PREDICTED: high mobility group protein B2 [Ovis aries]
Length = 205
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|73993609|ref|XP_543194.2| PREDICTED: high mobility group protein B2 isoform 1 [Canis lupus
familiaris]
gi|301753755|ref|XP_002912713.1| PREDICTED: high mobility group protein B2-like [Ailuropoda
melanoleuca]
gi|410956554|ref|XP_003984907.1| PREDICTED: high mobility group protein B2 [Felis catus]
gi|281338293|gb|EFB13877.1| hypothetical protein PANDA_000462 [Ailuropoda melanoleuca]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|11321591|ref|NP_002120.1| high mobility group protein B2 [Homo sapiens]
gi|83035095|ref|NP_001032705.1| high mobility group protein B2 [Bos taurus]
gi|194688133|ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens]
gi|194688135|ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens]
gi|332820789|ref|XP_517538.3| PREDICTED: high mobility group protein B2 isoform 2 [Pan
troglodytes]
gi|332820791|ref|XP_003310651.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan
troglodytes]
gi|397505874|ref|XP_003823467.1| PREDICTED: high mobility group protein B2 isoform 1 [Pan paniscus]
gi|397505876|ref|XP_003823468.1| PREDICTED: high mobility group protein B2 isoform 2 [Pan paniscus]
gi|397505878|ref|XP_003823469.1| PREDICTED: high mobility group protein B2 isoform 3 [Pan paniscus]
gi|410038949|ref|XP_003950520.1| PREDICTED: high mobility group protein B2 [Pan troglodytes]
gi|123374|sp|P26583.2|HMGB2_HUMAN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|109940084|sp|P40673.3|HMGB2_BOVIN RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|32333|emb|CAA44395.1| HMG-2 [Homo sapiens]
gi|184236|gb|AAA58659.1| high mobility group 2 protein [Homo sapiens]
gi|12654471|gb|AAH01063.1| High-mobility group box 2 [Homo sapiens]
gi|54696426|gb|AAV38585.1| high-mobility group box 2 [Homo sapiens]
gi|61358840|gb|AAX41628.1| high-mobility group box 2 [synthetic construct]
gi|71679685|gb|AAI00020.1| HMGB2 protein [Homo sapiens]
gi|81674324|gb|AAI09756.1| High-mobility group box 2 [Bos taurus]
gi|119625163|gb|EAX04758.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|119625164|gb|EAX04759.1| high-mobility group box 2, isoform CRA_a [Homo sapiens]
gi|123982946|gb|ABM83214.1| high-mobility group box 2 [synthetic construct]
gi|123997623|gb|ABM86413.1| high-mobility group box 2 [synthetic construct]
gi|189053183|dbj|BAG34805.1| unnamed protein product [Homo sapiens]
gi|208966462|dbj|BAG73245.1| high-mobility group box 2 [synthetic construct]
gi|296484972|tpg|DAA27087.1| TPA: high mobility group protein B2 [Bos taurus]
gi|380785663|gb|AFE64707.1| high mobility group protein B2 [Macaca mulatta]
gi|383417929|gb|AFH32178.1| high mobility group protein B2 [Macaca mulatta]
gi|383417931|gb|AFH32179.1| high mobility group protein B2 [Macaca mulatta]
gi|383417933|gb|AFH32180.1| high mobility group protein B2 [Macaca mulatta]
gi|384941858|gb|AFI34534.1| high mobility group protein B2 [Macaca mulatta]
gi|384946750|gb|AFI36980.1| high mobility group protein B2 [Macaca mulatta]
gi|410212048|gb|JAA03243.1| high-mobility group box 2 [Pan troglodytes]
gi|410212050|gb|JAA03244.1| high-mobility group box 2 [Pan troglodytes]
gi|410253758|gb|JAA14846.1| high-mobility group box 2 [Pan troglodytes]
gi|410253760|gb|JAA14847.1| high-mobility group box 2 [Pan troglodytes]
gi|410304294|gb|JAA30747.1| high-mobility group box 2 [Pan troglodytes]
gi|410304296|gb|JAA30748.1| high-mobility group box 2 [Pan troglodytes]
gi|410337391|gb|JAA37642.1| high-mobility group box 2 [Pan troglodytes]
gi|410337393|gb|JAA37643.1| high-mobility group box 2 [Pan troglodytes]
gi|410337395|gb|JAA37644.1| high mobility group box 2 [Pan troglodytes]
gi|440908504|gb|ELR58513.1| High mobility group protein B2 [Bos grunniens mutus]
gi|738688|prf||2001363A high mobility group protein 2
Length = 209
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|383417927|gb|AFH32177.1| high mobility group protein B2 [Macaca mulatta]
Length = 206
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|351708060|gb|EHB10979.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 241
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
KDPN PKR PSAFF+F E+ K E+P + ++ V K GE W
Sbjct: 89 KDPNAPKRLPSAFFLFCSEYHPKIKGEYPGL-SIGDVAKKLGEIW 132
>gi|351701092|gb|EHB04011.1| High mobility group protein B2 [Heterocephalus glaber]
Length = 215
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 94 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 134
>gi|296195168|ref|XP_002745261.1| PREDICTED: high mobility group protein B2-like isoform 2
[Callithrix jacchus]
Length = 205
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|291385922|ref|XP_002709517.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
gi|344288245|ref|XP_003415861.1| PREDICTED: high mobility group protein B2-like [Loxodonta africana]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|297674678|ref|XP_002815340.1| PREDICTED: high mobility group protein B2 isoform 1 [Pongo abelii]
gi|297674680|ref|XP_002815341.1| PREDICTED: high mobility group protein B2 isoform 2 [Pongo abelii]
gi|395735499|ref|XP_003776594.1| PREDICTED: high mobility group protein B2 [Pongo abelii]
gi|402870856|ref|XP_003899415.1| PREDICTED: high mobility group protein B2 isoform 1 [Papio anubis]
gi|402870858|ref|XP_003899416.1| PREDICTED: high mobility group protein B2 isoform 2 [Papio anubis]
gi|402871219|ref|XP_003899573.1| PREDICTED: high mobility group protein B2-like [Papio anubis]
gi|90086209|dbj|BAE91657.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|109076196|ref|XP_001085665.1| PREDICTED: high mobility group protein B2-like [Macaca mulatta]
Length = 321
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 207 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 247
>gi|332217748|ref|XP_003258025.1| PREDICTED: high mobility group protein B2 [Nomascus leucogenys]
gi|426346003|ref|XP_004040680.1| PREDICTED: high mobility group protein B2 isoform 1 [Gorilla
gorilla gorilla]
gi|426346005|ref|XP_004040681.1| PREDICTED: high mobility group protein B2 isoform 2 [Gorilla
gorilla gorilla]
gi|426346007|ref|XP_004040682.1| PREDICTED: high mobility group protein B2 isoform 3 [Gorilla
gorilla gorilla]
gi|54696428|gb|AAV38586.1| high-mobility group box 2 [Homo sapiens]
Length = 208
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|291413997|ref|XP_002723251.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|291413747|ref|XP_002723128.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 117 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 157
>gi|443897570|dbj|GAC74910.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 280
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
+DP KPKRP SAFF FL + R + PN+ S K GGE+WK +T
Sbjct: 203 RDPAKPKRPNSAFFEFLNDLR-ASESVIPNITEFS---KRGGERWKQMT 247
>gi|395840000|ref|XP_003792858.1| PREDICTED: high mobility group protein B2 [Otolemur garnettii]
Length = 209
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|386783721|gb|AFJ24755.1| high mobility group-2 [Schmidtea mediterranea]
Length = 192
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K +K K KDPNKPK P +AFF F E R+ K+++P K V + K G+ W D
Sbjct: 83 KPSKKAKREAKDPNKPKAPLTAFFFFSNEHRQTVKEKNPEFK-VGDIAKVLGKMWSECKD 141
Query: 101 AIKKEH 106
K E
Sbjct: 142 KSKYEE 147
>gi|8393536|ref|NP_058883.1| high mobility group protein B2 [Rattus norvegicus]
gi|293340790|ref|XP_001063065.2| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|293352163|ref|XP_573272.3| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|1708260|sp|P52925.2|HMGB2_RAT RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|1304193|dbj|BAA12350.1| HMG2 [Rattus norvegicus]
gi|51259308|gb|AAH78866.1| Hmgb2 protein [Rattus norvegicus]
gi|58476482|gb|AAH89854.1| Hmgb2 protein [Rattus norvegicus]
gi|77567606|gb|AAI07456.1| Hmgb2 protein [Rattus norvegicus]
gi|149032266|gb|EDL87172.1| rCG59188 [Rattus norvegicus]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|118792222|ref|XP_001238271.1| AGAP012334-PA [Anopheles gambiae str. PEST]
gi|116116797|gb|EAU75768.1| AGAP012334-PA [Anopheles gambiae str. PEST]
Length = 111
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KPKRP SA+ ++L R+ K+E+P +K V+ + K GGE W+ + D + E+
Sbjct: 4 KPKRPLSAYMLWLNSAREQIKKENPGIK-VTEIAKKGGELWRGMKDKSEWEY 54
>gi|355778495|gb|EHH63531.1| hypothetical protein EGM_16518 [Macaca fascicularis]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|291415825|ref|XP_002724150.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103
DP KPK+P SAFF+F E R E+ NV+ V K GE+WK++T+ K
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASLLAENKNVR---EVAKIAGEQWKNMTEEQK 355
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 41 KRTKNVKSAKK----DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK 96
K+TK + KK DPNKPK+P S+F +F +E RK QE P V S + KWK
Sbjct: 417 KKTKENRQKKKQQNVDPNKPKKPASSFLIFSKEARKNLAQERP-VINNSTLNALISVKWK 475
Query: 97 SLTD 100
L++
Sbjct: 476 ELSE 479
>gi|62638360|ref|XP_574279.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
gi|109460525|ref|XP_001074365.1| PREDICTED: high mobility group protein B2-like [Rattus norvegicus]
Length = 209
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|426215132|ref|XP_004001831.1| PREDICTED: high mobility group protein B4 [Ovis aries]
Length = 196
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DP+ P+RPPS+F +F ++ K E+P+ V V KA G+ W + TD K+
Sbjct: 91 DPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVVQ-VAKASGKMWSAKTDVDKQ 142
>gi|444732758|gb|ELW73033.1| High mobility group protein B2 [Tupaia chinensis]
Length = 234
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 127 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 167
>gi|355687725|gb|EHH26309.1| hypothetical protein EGK_16239 [Macaca mulatta]
Length = 209
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 133
>gi|109001746|ref|XP_001107984.1| PREDICTED: high mobility group protein B4-like [Macaca mulatta]
gi|67968844|dbj|BAE00779.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+P+ V V KA G+ W + TD
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPSWSVVQ-VAKATGKMWSATTD 138
>gi|444722479|gb|ELW63171.1| High mobility group protein B2 [Tupaia chinensis]
Length = 147
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
PN PKRPPSAFF+F E K EHP + ++ K GE W
Sbjct: 30 PNTPKRPPSAFFLFCSEHLPKIKSEHPGL-SIGDTAKKLGEMW 71
>gi|94966915|ref|NP_001035652.1| high mobility group protein B4 [Bos taurus]
gi|119370723|sp|Q32L34.1|HMGB4_BOVIN RecName: Full=High mobility group protein B4
gi|81673105|gb|AAI09791.1| High-mobility group box 4 [Bos taurus]
gi|296488916|tpg|DAA31029.1| TPA: high mobility group protein B4 [Bos taurus]
Length = 194
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKK 104
DP+ P+RPPS+F +F ++ K E+P+ V V KA G+ W + TD K+
Sbjct: 89 DPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVVQ-VAKASGKMWSAKTDVDKQ 140
>gi|118343822|ref|NP_001071733.1| transcription factor protein [Ciona intestinalis]
gi|70569841|dbj|BAE06487.1| transcription factor protein [Ciona intestinalis]
Length = 204
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PKRP SAFF+F + R K E+P V + KA G+KW + + KK++
Sbjct: 94 DPNAPKRPQSAFFLFCADRRAPLKAENPGW-TVGEIAKALGKKWAAASPDTKKKY 147
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSA-VGKAGGEKWKSLTDAIKK 104
KKDPNKP+ + + F++ R+ +K++HPN + V A + ++WK +TD KK
Sbjct: 4 KKDPNKPRGRMTGYAYFVQTCREEHKRKHPNEQVVFAEFSRKCAKRWKPMTDKEKK 59
>gi|441618163|ref|XP_003271355.2| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 206
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
DPN PK P S FF+F EF K P + ++ V K GE W +L D+ K+ +
Sbjct: 95 DPNAPKMPQSGFFLFCSEFCLKIKSTKPGI-SIGDVAKKLGEMWNNLNDSEKQPY 148
>gi|402853838|ref|XP_003891595.1| PREDICTED: high mobility group protein B4 [Papio anubis]
Length = 191
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
DP P+RPPS+F +F ++ K+E+P+ V V KA G+ W + TD
Sbjct: 91 DPQAPRRPPSSFLLFCQDHYAQLKRENPSWSVVQ-VAKATGKMWSATTD 138
>gi|170033409|ref|XP_001844570.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167874308|gb|EDS37691.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 113
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KPKRP SA+ ++L R+ K+E+P +K V+ + K GGE W+ + D + E+
Sbjct: 4 KPKRPLSAYMLWLNSAREGIKKENPGIK-VTEIAKKGGELWRGMKDKTEWEN 54
>gi|452982812|gb|EME82570.1| hypothetical protein MYCFIDRAFT_79010 [Pseudocercospora fijiensis
CIRAD86]
Length = 389
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYK---QEHPNVKAVSA--VGKAGGEKWKSLTDAIKK 104
++DPN PKRP +A+F +L+E R + Q +P + A + K E+WK+L DA +K
Sbjct: 144 QRDPNAPKRPLTAYFRYLKEVRPLIAAEVQNNPPSDGIKAGDISKIATERWKALGDAKRK 203
Query: 105 EH 106
+
Sbjct: 204 PY 205
>gi|453083241|gb|EMF11287.1| HMG_box-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 109
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
KKDPN PKR SA+ F + R ++++P +K VGK GE+WK+L +
Sbjct: 24 KKDPNMPKRGLSAYMFFANDTRDKVREDNPGIK-FGEVGKLLGERWKALNE 73
>gi|389608535|dbj|BAM17877.1| high mobility group protein D [Papilio xuthus]
Length = 121
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
+KPKRP SA+ ++L R+ K ++P ++ V+ + K GGE W+S+ D
Sbjct: 3 DKPKRPMSAYMLWLNSAREQIKADNPGLR-VTEIAKKGGEIWRSMED 48
>gi|354484377|ref|XP_003504365.1| PREDICTED: high mobility group protein B2-like [Cricetulus griseus]
Length = 264
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW 95
N PKRPPSAFF+F E R K EHP + ++ K GE W
Sbjct: 147 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMW 187
>gi|340052816|emb|CCC47102.1| putative high mobility group protein [Trypanosoma vivax Y486]
Length = 271
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAI 102
+++ K+ KD N PKR SAF F +EFR +HPN+ +++ KA G W+ L+D
Sbjct: 193 SRSAKAKNKDENAPKRAVSAFMFFSKEFR----SKHPNL-SMTEGSKAAGAAWRELSDEK 247
Query: 103 KK 104
KK
Sbjct: 248 KK 249
>gi|398398886|ref|XP_003852900.1| hypothetical protein MYCGRDRAFT_31129, partial [Zymoseptoria
tritici IPO323]
gi|339472782|gb|EGP87876.1| hypothetical protein MYCGRDRAFT_31129 [Zymoseptoria tritici IPO323]
Length = 90
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQ---EHPNVKAVSA--VGKAGGEKWKSLTDA 101
++D N PKRP +A+F +L E R + + E+P+ + A + K E+WK+LTDA
Sbjct: 7 QRDMNAPKRPLTAYFRYLREQRPILTREMAENPDTEGTKAGDISKLATERWKALTDA 63
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KKDPN PKR SA+ F +++R+ K E+P+ VGK G KWK + ++ K+ +
Sbjct: 26 GKKDPNAPKRALSAYMFFSQDWRERVKAENPDA-GFGEVGKLLGAKWKEMDESEKRPY 82
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
K KKDPN PKR SAFF++ + R + HP+ + V + K G++WK ++D+ K ++
Sbjct: 89 KRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQWKEISDSDKAKY 147
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAV-SAVGKAGGEKWKSLTDAIKK 104
KD NKPK SA+ F++E R+ +++++PN + V + + +WK++ D KK
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMNDDEKK 57
>gi|146412508|ref|XP_001482225.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
gi|146392989|gb|EDK41147.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
Length = 90
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99
DP+ PKR SA+ F E R + + E+P + A VGK GEKWK++
Sbjct: 13 DPDAPKRSLSAYMFFANENRDIIRAENPGI-AFGQVGKLLGEKWKAMN 59
>gi|196010223|ref|XP_002114976.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
gi|190582359|gb|EDV22432.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
Length = 694
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98
K K VK+A+ DPN PKRP S + ++L++ R K E+P+ V+ V K GE WKSL
Sbjct: 541 KPAKKVKNAR-DPNLPKRPLSGYMLWLQKQRDRIKNENPSF-TVAEVAKKAGEIWKSL 596
>gi|323354109|gb|EGA85955.1| Ixr1p [Saccharomyces cerevisiae VL3]
Length = 455
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 32 VLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
V+K S+ R + K KK PKRP SA+F+F R Q+ P K V + K
Sbjct: 346 VVKKLSSTQSRIERRKQLKK--QGPKRPSSAYFLFSMSIRNELLQQFPEAK-VPELSKLA 402
Query: 92 GEKWKSLTDAIKK 104
+WK LTD KK
Sbjct: 403 SARWKELTDDQKK 415
>gi|321476548|gb|EFX87508.1| hypothetical protein DAPPUDRAFT_306496 [Daphnia pulex]
Length = 191
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106
KDPN PKR SAFF F + R K++HP + + K G +W DA K ++
Sbjct: 97 KDPNAPKRSLSAFFWFCHDLRGHVKEQHPEY-TLGEIAKELGRRWGVSDDATKAQY 151
>gi|242215849|ref|XP_002473736.1| predicted protein [Postia placenta Mad-698-R]
gi|220727131|gb|EED81060.1| predicted protein [Postia placenta Mad-698-R]
Length = 578
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
++ R + ++ ++DP RPP+AF +F E+ + + N + K GE WK
Sbjct: 92 NATSRWRAQRNRERDPTWVPRPPNAFIIFRSEYSRKHAHGGTNKAEEKTLSKRAGETWKL 151
Query: 98 LTDAIKKEH 106
L+DA KK +
Sbjct: 152 LSDAEKKPY 160
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.127 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,724,801,424
Number of Sequences: 23463169
Number of extensions: 57833968
Number of successful extensions: 321270
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 1848
Number of HSP's that attempted gapping in prelim test: 317171
Number of HSP's gapped (non-prelim): 4832
length of query: 116
length of database: 8,064,228,071
effective HSP length: 83
effective length of query: 33
effective length of database: 6,116,785,044
effective search space: 201853906452
effective search space used: 201853906452
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)