Query 033573
Match_columns 116
No_of_seqs 163 out of 1055
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 2.2E-22 4.7E-27 136.1 9.0 70 43-113 10-81 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.8 6.6E-19 1.4E-23 114.2 7.9 58 55-113 1-58 (77)
3 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 2E-18 4.3E-23 107.5 7.7 57 56-113 1-57 (66)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 3.5E-18 7.6E-23 109.6 7.7 57 56-113 2-58 (72)
5 PF00505 HMG_box: HMG (high mo 99.7 9.7E-18 2.1E-22 105.3 7.3 57 56-113 1-57 (69)
6 smart00398 HMG high mobility g 99.7 1.8E-17 3.9E-22 103.6 8.0 58 55-113 1-58 (70)
7 cd00084 HMG-box High Mobility 99.7 4.7E-17 1E-21 100.6 7.9 57 56-113 1-57 (66)
8 COG5648 NHP6B Chromatin-associ 99.7 1.1E-17 2.3E-22 127.2 5.9 68 44-112 59-126 (211)
9 PF09011 HMG_box_2: HMG-box do 99.7 9.5E-17 2.1E-21 103.2 7.6 60 53-113 1-61 (73)
10 KOG0381 HMG box-containing pro 99.7 5.1E-16 1.1E-20 103.7 8.5 62 52-114 17-80 (96)
11 KOG0527 HMG-box transcription 99.5 7.4E-15 1.6E-19 118.7 6.4 64 49-113 56-119 (331)
12 KOG0526 Nucleosome-binding fac 99.5 3.4E-14 7.4E-19 119.9 5.4 63 45-112 525-587 (615)
13 KOG0528 HMG-box transcription 99.0 9.4E-11 2E-15 98.2 1.8 63 50-113 320-382 (511)
14 KOG3248 Transcription factor T 99.0 7E-10 1.5E-14 90.1 5.6 56 55-111 191-246 (421)
15 KOG4715 SWI/SNF-related matrix 98.8 6.4E-09 1.4E-13 84.0 5.7 62 48-110 57-118 (410)
16 KOG2746 HMG-box transcription 98.6 2.8E-08 6.2E-13 86.0 3.6 69 45-114 171-241 (683)
17 PF06382 DUF1074: Protein of u 97.6 0.00017 3.7E-09 54.2 5.7 48 60-112 83-130 (183)
18 PF14887 HMG_box_5: HMG (high 97.3 0.0012 2.6E-08 43.7 6.0 57 55-113 3-59 (85)
19 PF08073 CHDNT: CHDNT (NUC034) 97.0 0.0011 2.3E-08 41.1 3.5 40 60-100 13-52 (55)
20 PF04690 YABBY: YABBY protein; 96.9 0.0023 5E-08 47.8 5.7 47 52-99 118-164 (170)
21 COG5648 NHP6B Chromatin-associ 95.0 0.017 3.6E-07 44.6 2.3 58 54-112 142-199 (211)
22 PF04769 MAT_Alpha1: Mating-ty 94.5 0.09 1.9E-06 40.2 5.2 44 50-98 38-81 (201)
23 PF06244 DUF1014: Protein of u 94.3 0.066 1.4E-06 38.0 3.8 49 51-100 68-116 (122)
24 KOG3223 Uncharacterized conser 86.5 0.61 1.3E-05 35.8 2.5 58 54-115 162-220 (221)
25 TIGR03481 HpnM hopanoid biosyn 85.0 1.4 3.1E-05 33.2 3.9 34 80-114 63-97 (198)
26 PRK15117 ABC transporter perip 84.4 1.8 3.9E-05 32.9 4.3 34 79-113 66-100 (211)
27 PF13875 DUF4202: Domain of un 70.8 12 0.00027 28.4 5.1 41 61-105 130-170 (185)
28 PF05494 Tol_Tol_Ttg2: Toluene 68.1 3.7 8E-05 29.6 1.8 34 79-113 36-70 (170)
29 PF01352 KRAB: KRAB box; Inte 59.9 9.3 0.0002 21.9 2.1 32 83-114 2-34 (41)
30 PF12881 NUT_N: NUT protein N 56.6 35 0.00075 28.1 5.6 51 62-113 231-281 (328)
31 PF06945 DUF1289: Protein of u 55.0 23 0.00049 21.0 3.3 22 83-109 23-44 (51)
32 PF12650 DUF3784: Domain of un 51.4 11 0.00024 24.8 1.8 17 94-110 25-41 (97)
33 PF05388 Carbpep_Y_N: Carboxyp 48.0 34 0.00075 23.8 3.8 30 84-113 45-74 (113)
34 PF11304 DUF3106: Protein of u 45.0 40 0.00087 23.0 3.7 24 87-110 12-35 (107)
35 PRK10236 hypothetical protein; 44.2 26 0.00057 27.6 3.0 22 87-108 118-139 (237)
36 PF11304 DUF3106: Protein of u 39.1 1.2E+02 0.0027 20.5 6.0 37 73-110 33-71 (107)
37 PF00887 ACBP: Acyl CoA bindin 38.3 52 0.0011 21.1 3.4 51 63-115 30-84 (87)
38 PF09164 VitD-bind_III: Vitami 34.5 1.3E+02 0.0027 19.3 4.7 32 61-93 9-40 (68)
39 PF15581 Imm35: Immunity prote 33.3 91 0.002 21.1 3.9 26 83-108 31-56 (93)
40 PF13412 HTH_24: Winged helix- 32.6 50 0.0011 18.5 2.3 24 74-98 11-34 (48)
41 PF15076 DUF4543: Domain of un 32.0 48 0.001 21.4 2.3 21 49-69 25-45 (75)
42 PF13945 NST1: Salt tolerance 31.6 79 0.0017 24.0 3.8 25 84-108 100-124 (190)
43 cd08317 Death_ank Death domain 31.2 27 0.00059 22.4 1.1 20 79-99 3-22 (84)
44 cd00435 ACBP Acyl CoA binding 30.8 66 0.0014 21.0 2.9 51 63-115 28-82 (85)
45 PF02026 RyR: RyR domain; Int 30.5 38 0.00083 22.6 1.8 21 94-114 60-80 (94)
46 PF06628 Catalase-rel: Catalas 30.2 46 0.001 20.6 2.0 18 91-108 13-30 (68)
47 COG3313 Predicted Fe-S protein 27.7 58 0.0013 21.2 2.2 19 83-106 28-46 (74)
48 PHA02662 ORF131 putative membr 26.8 1.8E+02 0.0039 22.8 5.1 30 76-106 69-98 (226)
49 PRK12751 cpxP periplasmic stre 25.0 1.1E+02 0.0023 22.6 3.5 26 86-111 118-143 (162)
50 PRK09731 putative general secr 23.0 1.7E+02 0.0038 21.9 4.3 44 61-113 4-47 (178)
51 PRK05439 pantothenate kinase; 22.8 89 0.0019 25.3 2.9 54 59-113 6-60 (311)
52 PF07813 LTXXQ: LTXXQ motif fa 22.3 1.8E+02 0.0039 18.2 3.8 26 84-109 74-99 (100)
53 KOG1827 Chromatin remodeling c 22.2 4.4 9.5E-05 36.0 -5.0 44 59-103 552-595 (629)
54 cd00922 Cyt_c_Oxidase_IV Cytoc 20.7 1.5E+02 0.0033 21.1 3.4 15 95-109 44-58 (136)
55 COG2854 Ttg2D ABC-type transpo 20.3 89 0.0019 24.0 2.3 26 88-113 77-102 (202)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.88 E-value=2.2e-22 Score=136.09 Aligned_cols=70 Identities=39% Similarity=0.504 Sum_probs=64.1
Q ss_pred cccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 43 ~kk~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s--~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+++++..+||+.|+||+|||||||+++|..|..+||++ + +.+|+++||++|+.||++||.+|+++|...
T Consensus 10 ~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~-~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~d 81 (94)
T PTZ00199 10 VRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPEL-AKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQED 81 (94)
T ss_pred ccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556789999999999999999999999999999998 5 899999999999999999999999998763
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.78 E-value=6.6e-19 Score=114.21 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=55.4
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 55 ~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.|++++|++|+++|...
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~ 58 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKELAEEE 58 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999 9999999999999999999999999998764
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.77 E-value=2e-18 Score=107.49 Aligned_cols=57 Identities=42% Similarity=0.580 Sum_probs=54.7
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 56 PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|++|+|||++|++++|..+..+||++ ++.+|++.||++|+.||+++|.+|.+.|...
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~ 57 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEKAEKD 57 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 9999999999999999999999999988653
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.76 E-value=3.5e-18 Score=109.65 Aligned_cols=57 Identities=30% Similarity=0.449 Sum_probs=54.4
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 56 PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+||+||||+||+++|..++.+||++ ++.+|+++||++|+.||+++|++|.++|...
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~ 58 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEAKKL 58 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999 9999999999999999999999999998754
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.74 E-value=9.7e-18 Score=105.33 Aligned_cols=57 Identities=32% Similarity=0.493 Sum_probs=52.9
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 56 PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|+||+|||+|||++++..+..+||++ ++.+|+++||.+|+.||+++|.+|.+.|...
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~-~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~ 57 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDL-SNKEISKILAQMWKNLSEEEKAPYKEEAEEE 57 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTS-THHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccc-ccccchhhHHHHHhcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 9999999999999999999999999988754
No 6
>smart00398 HMG high mobility group.
Probab=99.73 E-value=1.8e-17 Score=103.57 Aligned_cols=58 Identities=36% Similarity=0.494 Sum_probs=55.4
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 55 ~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+|++|+|+|++|++++|..+..+||++ ++.+|++.||.+|+.||+++|.+|.+.|...
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~ 58 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDL-SNAEISKKLGERWKLLSEEEKAPYEEKAKKD 58 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999 9999999999999999999999999988754
No 7
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.71 E-value=4.7e-17 Score=100.60 Aligned_cols=57 Identities=40% Similarity=0.563 Sum_probs=54.7
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 56 PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|++|+|||++|++++|..+..+||++ ++.+|++.||.+|+.|++++|.+|.+.|...
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~ 57 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEKAEKD 57 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999 9999999999999999999999999988754
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.71 E-value=1.1e-17 Score=127.19 Aligned_cols=68 Identities=41% Similarity=0.633 Sum_probs=63.8
Q ss_pred ccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 033573 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112 (116)
Q Consensus 44 kk~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~ 112 (116)
+...++.+|||.|+||+|+||+|++++|+.|+.++|.+ +|.+|++++|++|++|+++|+.+|...+-.
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l-~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~ 126 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKL-TFGEVGKLLSEKWKELTDEEKEPYYKEANS 126 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHhccHhhhhhHHHHHhh
Confidence 55677789999999999999999999999999999999 999999999999999999999999987753
No 9
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.69 E-value=9.5e-17 Score=103.19 Aligned_cols=60 Identities=38% Similarity=0.520 Sum_probs=52.0
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 53 PNKPKRPPSAFFVFLEEFRKVYKQE-HPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~vk~e-~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|+.|++|+|||+||+.+++..+... ++.. ++.|+++.||+.|+.||++||.+|++.|...
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~-~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~ 61 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQ-SFREVMKEISERWKSLSEEEKEPYEERAKED 61 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-S-SHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7899999999999999999999988 7777 8999999999999999999999999999765
No 10
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.66 E-value=5.1e-16 Score=103.67 Aligned_cols=62 Identities=42% Similarity=0.596 Sum_probs=58.2
Q ss_pred CC--CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 033573 52 DP--NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVIC 114 (116)
Q Consensus 52 dp--~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~~ 114 (116)
|| +.|+||+|||++|+.++|..++.+||++ ++.+|++++|++|+.|+++++.+|+..+...+
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~-~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k 80 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGL-SVGEVAKALGEMWKNLAEEEKQPYEEKASKLK 80 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 77 4999999999999999999999999999 99999999999999999999999998887654
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.55 E-value=7.4e-15 Score=118.67 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 49 k~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.......-||||||||+|.+.+|..|..+||.+ ...||++.||.+|+.|+++||.||++.|.-|
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~m-HNSEISK~LG~~WK~Lse~EKrPFi~EAeRL 119 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKM-HNSEISKRLGAEWKLLSEEEKRPFVDEAERL 119 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcch-hhHHHHHHHHHHHhhcCHhhhccHHHHHHHH
Confidence 345566789999999999999999999999999 9999999999999999999999999988644
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.48 E-value=3.4e-14 Score=119.95 Aligned_cols=63 Identities=38% Similarity=0.612 Sum_probs=58.9
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 033573 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112 (116)
Q Consensus 45 k~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~ 112 (116)
+..++.+|||+|||++||||||++..|..|+.+ ++ ++++|++.+|++|+.||. |.+|+++|++
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi-~~~dv~kk~g~~wk~ms~--k~~we~ka~~ 587 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GI-SVGDVAKKAGEKWKQMSA--KEEWEDKAAV 587 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cc-hHHHHHHHHhHHHhhhcc--cchhhHHHHH
Confidence 566778999999999999999999999999988 88 999999999999999999 9999999875
No 13
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.02 E-value=9.4e-11 Score=98.23 Aligned_cols=63 Identities=24% Similarity=0.422 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
...++.-||||||||+|..|.|..|...+|++ ....|+++||..|+.|+..||+||.+..+.|
T Consensus 320 ~ss~PHIKRPMNAFMVWAkDERRKILqA~PDM-HNSnISKILGSRWKaMSN~eKQPYYEEQaRL 382 (511)
T KOG0528|consen 320 ASSEPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMSNTEKQPYYEEQARL 382 (511)
T ss_pred CCCCccccCCcchhhcccchhhhhhhhcCccc-cccchhHHhcccccccccccccchHHHHHHH
Confidence 34455779999999999999999999999999 9999999999999999999999999876654
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=98.98 E-value=7e-10 Score=90.07 Aligned_cols=56 Identities=20% Similarity=0.390 Sum_probs=51.7
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 033573 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKF 111 (116)
Q Consensus 55 ~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~ 111 (116)
.-|+|+||||||+.+.|..|..++-.- ...+|.++||.+|..||-+|...|.++|.
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctlK-eSAaiNqiLGrRWH~LSrEEQAKYyElAr 246 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTLK-ESAAINQILGRRWHALSREEQAKYYELAR 246 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Confidence 568999999999999999999999644 78999999999999999999999999874
No 15
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=98.82 E-value=6.4e-09 Score=84.00 Aligned_cols=62 Identities=23% Similarity=0.403 Sum_probs=56.6
Q ss_pred ccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 033573 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVK 110 (116)
Q Consensus 48 kk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a 110 (116)
...+.|..|-+|+-+||.|+...|++|+..||++ ...||.++||.+|..|+++||+.|++-.
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~-kLWeiGK~Ig~mW~dLpd~EK~ey~~EY 118 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPEL-KLWEIGKIIGGMWLDLPDEEKQEYLNEY 118 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcch-HHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence 3456777889999999999999999999999999 8999999999999999999999998654
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.61 E-value=2.8e-08 Score=86.04 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=62.1
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHH--HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 033573 45 NVKSAKKDPNKPKRPPSAFFVFLEEFR--KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVIC 114 (116)
Q Consensus 45 k~kkk~kdp~~PKRP~say~lF~~e~R--~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~~ 114 (116)
.+..-++|...-+||||+|++|++.+| ..+.+.||+. ...-|+++||+.|-.|.+.||+.|.++|..+.
T Consensus 171 grspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~-DNrtIskiLgewWytL~~~Ekq~yhdLa~Qvk 241 (683)
T KOG2746|consen 171 GRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQ-DNRTISKILGEWWYTLGPNEKQKYHDLAFQVK 241 (683)
T ss_pred cCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccc-cchhHHHHHhhhHhhhCchhhhhHHHHHHHHH
Confidence 334445666788999999999999999 9999999999 89999999999999999999999999998874
No 17
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.59 E-value=0.00017 Score=54.17 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=42.4
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 033573 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112 (116)
Q Consensus 60 ~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~ 112 (116)
-++|+-|+.++|. .|.++ +..|+....+..|..|++++|..|..++..
T Consensus 83 nnaYLNFLReFRr----kh~~L-~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 83 NNAYLNFLREFRR----KHCGL-SPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred chHHHHHHHHHHH----HccCC-CHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 4679999988876 56799 999999999999999999999999997653
No 18
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=97.27 E-value=0.0012 Score=43.71 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=46.4
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 55 ~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.|..|-++--+|.+.....+...+++- ...+ .+.+...|++|++.+|.+|+.+|++.
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K~-~kam~~~W~~me~Kekl~WIkKA~Ed 59 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKKA-LKAMEAQWSQMEKKEKLKWIKKAAED 59 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHHH-HHHHHHHHHTTGGGHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHHH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 577889999999999999999999987 6666 45999999999999999999999863
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.99 E-value=0.0011 Score=41.11 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=36.3
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 033573 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100 (116)
Q Consensus 60 ~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~ 100 (116)
++.|-+|.+..|+.|...||++ .++.+..+++.+|++-++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~-~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKA-PMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999 999999999999987543
No 20
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.95 E-value=0.0023 Score=47.82 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=41.7
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 033573 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99 (116)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls 99 (116)
.|.+-.|-+|||-.|+.+....|+..||++ +..|.-...+..|...+
T Consensus 118 PPEKRqR~psaYn~f~k~ei~rik~~~p~i-shkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 118 PPEKRQRVPSAYNRFMKEEIQRIKAENPDI-SHKEAFSAAAKNWAHFP 164 (170)
T ss_pred CccccCCCchhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhCc
Confidence 344456779999999999999999999999 99999999999998764
No 21
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=95.04 E-value=0.017 Score=44.56 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 033573 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFV 112 (116)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~ 112 (116)
.+|..|..+|+-|-..+|+.+...+|.. +..++++++|..|.+|++.-+.+|.+.+..
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~-~~~e~~k~~~~~w~el~~skK~~~~~~~Kk 199 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDK-ALVEETKIISKAWSELDESKKKKYIDKYKK 199 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcch-hhhHHhhhhhhhhhhhChhhhhHHHHHHHH
Confidence 3567788888889999999999999998 899999999999999999999999987654
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=94.52 E-value=0.09 Score=40.20 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 033573 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSL 98 (116)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~L 98 (116)
......++||+|+||.|+.=+ ....|+. ...++|..|+..|..=
T Consensus 38 ~~~~~~~kr~lN~Fm~FRsyy----~~~~~~~-~Qk~~S~~l~~lW~~d 81 (201)
T PF04769_consen 38 KRSPEKAKRPLNGFMAFRSYY----SPIFPPL-PQKELSGILTKLWEKD 81 (201)
T ss_pred cccccccccchhHHHHHHHHH----HhhcCCc-CHHHHHHHHHHHHhCC
Confidence 345557899999999995444 4566788 7899999999999863
No 23
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.35 E-value=0.066 Score=38.05 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 033573 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100 (116)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~ 100 (116)
.|..+-+|--.||.-|....-+.++.+||+| -.+++-.+|-..|..-++
T Consensus 68 ~drHPErR~KAAy~afeE~~Lp~lK~E~PgL-rlsQ~kq~l~K~w~KSPe 116 (122)
T PF06244_consen 68 IDRHPERRMKAAYKAFEERRLPELKEENPGL-RLSQYKQMLWKEWQKSPE 116 (122)
T ss_pred CCCCcchhHHHHHHHHHHHHhHHHHhhCCCc-hHHHHHHHHHHHHhcCCC
Confidence 3443345555789999999999999999999 899999999999987664
No 24
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=0.61 Score=35.84 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCC-CCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhc
Q 033573 54 NKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVICT 115 (116)
Q Consensus 54 ~~P-KRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~~~ 115 (116)
..| +|-..||.-|-...-+.++.+||++ ..+++-.+|-.+|..-++. ||.+.+..+++
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~l-rlsQ~Kqll~Kew~KsPDN---P~Nq~~~a~n~ 220 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGL-RLSQYKQLLKKEWQKSPDN---PFNQAAVAYNT 220 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCc-cHHHHHHHHHHHHhhCCCC---hhhHHhhhccC
Confidence 344 4445678899999999999999999 9999999999999988874 77776665543
No 25
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=84.98 E-value=1.4 Score=33.19 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHhhh
Q 033573 80 NVKAVSAVGK-AGGEKWKSLTDAIKKEHWMVKFVIC 114 (116)
Q Consensus 80 ~~~s~~eisK-~lge~Wk~Ls~eEK~~Y~e~a~~~~ 114 (116)
.. ++..+++ .||..|+.+|+++++.|.+....++
T Consensus 63 ~~-Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l 97 (198)
T TIGR03481 63 AF-DLPAMARLTLGSSWTSLSPEQRRRFIGAFRELS 97 (198)
T ss_pred hC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHH
Confidence 45 7788876 7899999999999999998776543
No 26
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=84.38 E-value=1.8 Score=32.91 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 79 PNVKAVSAVGK-AGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 79 P~~~s~~eisK-~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|.. ++..+++ .||.-|+.+|++++..|.+....+
T Consensus 66 p~~-Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~ 100 (211)
T PRK15117 66 PYV-QVKYAGALVLGRYYKDATPAQREAYFAAFREY 100 (211)
T ss_pred ccC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHH
Confidence 666 7888876 789999999999999999876554
No 27
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=70.78 E-value=12 Score=28.35 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=33.8
Q ss_pred chhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 033573 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKE 105 (116)
Q Consensus 61 say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~ 105 (116)
-+.++|...+-+.|...| +...+..+|...|..||+.-++-
T Consensus 130 vacLVFL~~~f~~F~~~~----deeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 130 VACLVFLEYYFEDFAAKH----DEEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred hHHHHhHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHHH
Confidence 358999999999999887 34568888999999999987753
No 28
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=68.09 E-value=3.7 Score=29.61 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=25.3
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 79 PNVKAVSAVGK-AGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 79 P~~~s~~eisK-~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|.+ .+..+++ .||.-|+.||+++++.|.+....+
T Consensus 36 ~~~-D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~ 70 (170)
T PF05494_consen 36 PYF-DFERMARRVLGRYWRKASPAQRQRFVEAFKQL 70 (170)
T ss_dssp GGB--HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHH
Confidence 555 6777765 578889999999999999876544
No 29
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=59.90 E-value=9.3 Score=21.86 Aligned_cols=32 Identities=22% Similarity=0.116 Sum_probs=18.2
Q ss_pred CHHHHHHHHH-HHhhcCCHHHHHHHHHHHHhhh
Q 033573 83 AVSAVGKAGG-EKWKSLTDAIKKEHWMVKFVIC 114 (116)
Q Consensus 83 s~~eisK~lg-e~Wk~Ls~eEK~~Y~e~a~~~~ 114 (116)
+|.+|+--+. +.|..|.+.+|.-|.+.-..-+
T Consensus 2 tf~Dvav~fs~eEW~~L~~~Qk~ly~dvm~Eny 34 (41)
T PF01352_consen 2 TFEDVAVYFSQEEWELLDPAQKNLYRDVMLENY 34 (41)
T ss_dssp -----TT---HHHHHTS-HHHHHHHHHHHHHTT
T ss_pred eEEEEEEEcChhhcccccceecccchhHHHHhh
Confidence 3455555555 5599999999999998765543
No 30
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=56.59 E-value=35 Score=28.10 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=37.3
Q ss_pred hhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 62 ay~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
||-.|+--.-..+....|.+ +..|-....-..|.-.|.-+|-.|+++|.-+
T Consensus 231 AlSCFLIpvLrsLar~kPtM-tlEeGl~ra~qEW~~~SnfdRmifyemaekF 281 (328)
T PF12881_consen 231 ALSCFLIPVLRSLARLKPTM-TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKF 281 (328)
T ss_pred hhhhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 34444433334445667888 8888777778899999999999999998654
No 31
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=55.03 E-value=23 Score=21.02 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 033573 83 AVSAVGKAGGEKWKSLTDAIKKEHWMV 109 (116)
Q Consensus 83 s~~eisK~lge~Wk~Ls~eEK~~Y~e~ 109 (116)
+..||.. |..|++++|......
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~ 44 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILAR 44 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHH
Confidence 5678775 999999998876653
No 32
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=51.41 E-value=11 Score=24.76 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=14.6
Q ss_pred HhhcCCHHHHHHHHHHH
Q 033573 94 KWKSLTDAIKKEHWMVK 110 (116)
Q Consensus 94 ~Wk~Ls~eEK~~Y~e~a 110 (116)
-|++||++||+.|.+..
T Consensus 25 Gyntms~eEk~~~D~~~ 41 (97)
T PF12650_consen 25 GYNTMSKEEKEKYDKKK 41 (97)
T ss_pred hcccCCHHHHHHhhHHH
Confidence 48999999999998654
No 33
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=48.00 E-value=34 Score=23.76 Aligned_cols=30 Identities=23% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 84 VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 84 ~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+.-++..+++.+..|+.+-|..|.|+...+
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~f 74 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLLF 74 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHC
Confidence 566788899999999999999999998753
No 34
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.99 E-value=40 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=11.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHH
Q 033573 87 VGKAGGEKWKSLTDAIKKEHWMVK 110 (116)
Q Consensus 87 isK~lge~Wk~Ls~eEK~~Y~e~a 110 (116)
+..-|...|+.|+++.+..+...+
T Consensus 12 ~L~pl~~~W~~l~~~qr~k~l~~a 35 (107)
T PF11304_consen 12 ALAPLAERWNSLPPEQRRKWLQIA 35 (107)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444555555555555444443
No 35
>PRK10236 hypothetical protein; Provisional
Probab=44.16 E-value=26 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 033573 87 VGKAGGEKWKSLTDAIKKEHWM 108 (116)
Q Consensus 87 isK~lge~Wk~Ls~eEK~~Y~e 108 (116)
+.++++..|..||++|++.+.+
T Consensus 118 l~kll~~a~~kms~eE~~~L~~ 139 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLH 139 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHH
Confidence 5889999999999999988764
No 36
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=39.09 E-value=1.2e+02 Score=20.53 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=21.5
Q ss_pred HHHHhCCCCCCHHHHHHHHH--HHhhcCCHHHHHHHHHHH
Q 033573 73 VYKQEHPNVKAVSAVGKAGG--EKWKSLTDAIKKEHWMVK 110 (116)
Q Consensus 73 ~vk~e~P~~~s~~eisK~lg--e~Wk~Ls~eEK~~Y~e~a 110 (116)
.+...++.+ +..+-..+.. ..|..||++++..--+-.
T Consensus 33 ~~a~r~~~m-speqq~r~~~rm~~W~~LspeqR~~~R~~~ 71 (107)
T PF11304_consen 33 QIAERWPSM-SPEQQQRLRERMRRWAALSPEQRQQARENY 71 (107)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566677 6655544443 357777777776544433
No 37
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=38.32 E-value=52 Score=21.12 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=33.6
Q ss_pred hHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC----HHHHHHHHHHHHhhhc
Q 033573 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT----DAIKKEHWMVKFVICT 115 (116)
Q Consensus 63 y~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls----~eEK~~Y~e~a~~~~~ 115 (116)
|-||.|.....+....|+.. .-+.+.--+.|+.|. ++-+..|.+....+|.
T Consensus 30 YalyKQAt~Gd~~~~~P~~~--d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~ 84 (87)
T PF00887_consen 30 YALYKQATHGDCDTPRPGFF--DIEGRAKWDAWKALKGMSKEEAMREYIELVEELIP 84 (87)
T ss_dssp HHHHHHHHTSS--S-CTTTT--CHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCcch--hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 77888887777766677762 444555567786654 4448899998888774
No 38
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=34.51 E-value=1.3e+02 Score=19.33 Aligned_cols=32 Identities=6% Similarity=0.204 Sum_probs=24.3
Q ss_pred chhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 033573 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGE 93 (116)
Q Consensus 61 say~lF~~e~R~~vk~e~P~~~s~~eisK~lge 93 (116)
+.|.-|-..-..+++...|++ +..+|..++..
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~a-t~~~l~~lve~ 40 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDA-TPTELKELVEK 40 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS--HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHH
Confidence 457778888899999999999 89998887744
No 39
>PF15581 Imm35: Immunity protein 35
Probab=33.26 E-value=91 Score=21.10 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 033573 83 AVSAVGKAGGEKWKSLTDAIKKEHWM 108 (116)
Q Consensus 83 s~~eisK~lge~Wk~Ls~eEK~~Y~e 108 (116)
++..+..++.+.|+.|++++=..-.+
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~kl~ 56 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLYKLE 56 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46778899999999999887544443
No 40
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=32.56 E-value=50 Score=18.45 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=16.7
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcC
Q 033573 74 YKQEHPNVKAVSAVGKAGGEKWKSL 98 (116)
Q Consensus 74 vk~e~P~~~s~~eisK~lge~Wk~L 98 (116)
+..++|.+ +..+|+..+|=.+..+
T Consensus 11 ~l~~~~~~-t~~ela~~~~is~~tv 34 (48)
T PF13412_consen 11 YLRENPRI-TQKELAEKLGISRSTV 34 (48)
T ss_dssp HHHHCTTS--HHHHHHHHTS-HHHH
T ss_pred HHHHcCCC-CHHHHHHHhCCCHHHH
Confidence 34579999 9999999987555444
No 41
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=32.03 E-value=48 Score=21.36 Aligned_cols=21 Identities=19% Similarity=0.545 Sum_probs=17.4
Q ss_pred cCCCCCCCCCCCchhHhHHHH
Q 033573 49 AKKDPNKPKRPPSAFFVFLEE 69 (116)
Q Consensus 49 k~kdp~~PKRP~say~lF~~e 69 (116)
+...|+.|.-||.-||++++.
T Consensus 25 r~~K~GfpdepmrE~ml~l~~ 45 (75)
T PF15076_consen 25 RPRKPGFPDEPMREYMLHLQA 45 (75)
T ss_pred CCCCCCCCcchHHHHHHHHHH
Confidence 456688999999999999864
No 42
>PF13945 NST1: Salt tolerance down-regulator
Probab=31.65 E-value=79 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH
Q 033573 84 VSAVGKAGGEKWKSLTDAIKKEHWM 108 (116)
Q Consensus 84 ~~eisK~lge~Wk~Ls~eEK~~Y~e 108 (116)
..+....|-+.|-.|+++||.-...
T Consensus 100 s~eEre~LkeFW~SL~eeERr~LVk 124 (190)
T PF13945_consen 100 SQEEREKLKEFWESLSEEERRSLVK 124 (190)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4566678999999999999998773
No 43
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=31.24 E-value=27 Score=22.37 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCC
Q 033573 79 PNVKAVSAVGKAGGEKWKSLT 99 (116)
Q Consensus 79 P~~~s~~eisK~lge~Wk~Ls 99 (116)
|++ .+..|+..||..|..|.
T Consensus 3 ~~~-~l~~ia~~lG~dW~~LA 22 (84)
T cd08317 3 ADI-RLADISNLLGSDWPQLA 22 (84)
T ss_pred ccc-hHHHHHHHHhhHHHHHH
Confidence 455 78899999999998774
No 44
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=30.82 E-value=66 Score=20.97 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=30.1
Q ss_pred hHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---hcCCHHH-HHHHHHHHHhhhc
Q 033573 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKW---KSLTDAI-KKEHWMVKFVICT 115 (116)
Q Consensus 63 y~lF~~e~R~~vk~e~P~~~s~~eisK~lge~W---k~Ls~eE-K~~Y~e~a~~~~~ 115 (116)
|-||.|.....+....|+. +.-+.+.--+.| ..||.+| +..|.+....||.
T Consensus 28 YalyKQAt~G~~~~~~P~~--~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~~ 82 (85)
T cd00435 28 YSLYKQATVGDCNTERPGM--FDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELIA 82 (85)
T ss_pred HHHHHHhccCCCCCCCCCc--ccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4555554444343334554 233455555667 4556555 8999999888875
No 45
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=30.51 E-value=38 Score=22.60 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=16.9
Q ss_pred HhhcCCHHHHHHHHHHHHhhh
Q 033573 94 KWKSLTDAIKKEHWMVKFVIC 114 (116)
Q Consensus 94 ~Wk~Ls~eEK~~Y~e~a~~~~ 114 (116)
-|..|++.+|..|.+.+..+.
T Consensus 60 py~~L~e~eK~~dr~~~~e~l 80 (94)
T PF02026_consen 60 PYDELSEEEKEKDRDMVRETL 80 (94)
T ss_dssp -GGGS-HHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHHhHHHHHHHH
Confidence 499999999999999887664
No 46
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=30.21 E-value=46 Score=20.63 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHhhcCCHHHHHHHHH
Q 033573 91 GGEKWKSLTDAIKKEHWM 108 (116)
Q Consensus 91 lge~Wk~Ls~eEK~~Y~e 108 (116)
-+..|+.|++++|..+.+
T Consensus 13 a~~ly~~l~~~er~~lv~ 30 (68)
T PF06628_consen 13 ARDLYRVLSDEERERLVE 30 (68)
T ss_dssp HHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 456799999999988764
No 47
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=27.73 E-value=58 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHH
Q 033573 83 AVSAVGKAGGEKWKSLTDAIKKEH 106 (116)
Q Consensus 83 s~~eisK~lge~Wk~Ls~eEK~~Y 106 (116)
+..||.. |..|+++||.--
T Consensus 28 t~~Ei~~-----W~~msd~Er~aV 46 (74)
T COG3313 28 TRDEIFN-----WSSMSDDERRAV 46 (74)
T ss_pred cHHHHHH-----HhhCCHHHHHHH
Confidence 4567764 999999998753
No 48
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=26.79 E-value=1.8e+02 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=24.7
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 033573 76 QEHPNVKAVSAVGKAGGEKWKSLTDAIKKEH 106 (116)
Q Consensus 76 ~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y 106 (116)
..|..+ +|.-+.+.+.|....|+++||..-
T Consensus 69 ~sna~~-sf~lll~Al~Et~~~Lp~~qK~~i 98 (226)
T PHA02662 69 HTDAAD-ALALASAALAETLAELPRADRLAV 98 (226)
T ss_pred cCCHHH-HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 345566 789999999999999999998753
No 49
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=25.03 E-value=1.1e+02 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 033573 86 AVGKAGGEKWKSLTDAIKKEHWMVKF 111 (116)
Q Consensus 86 eisK~lge~Wk~Ls~eEK~~Y~e~a~ 111 (116)
+..+...++++.|++++|..|.+...
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e 143 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQ 143 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33456677889999999999987654
No 50
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=23.01 E-value=1.7e+02 Score=21.89 Aligned_cols=44 Identities=7% Similarity=0.063 Sum_probs=29.6
Q ss_pred chhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 61 say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.-|+.|++..|..-. +-+| .-|+..|..|++-|+.--.=.+.++
T Consensus 4 ~~~~~~~~~~~~~~~-------~~~~--~~~~~~W~~ls~REq~ll~~~g~vL 47 (178)
T PRK09731 4 DKFIHYFQQWRERQL-------SRGE--HWLAQHLAGRSPREKGMLLAAVVFL 47 (178)
T ss_pred HHHHHHHHHHHHHHh-------cchh--hHHHHHHccCCHHHHHHHHHHHHHH
Confidence 358888888776443 3333 3578899999999887655444443
No 51
>PRK05439 pantothenate kinase; Provisional
Probab=22.83 E-value=89 Score=25.31 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=36.2
Q ss_pred CCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhh
Q 033573 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT-DAIKKEHWMVKFVI 113 (116)
Q Consensus 59 P~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls-~eEK~~Y~e~a~~~ 113 (116)
.+++|..|..+.+..+....|-.-+..|+..+- ..=..++ ++....|.-++-+|
T Consensus 6 ~~~~~~~~~r~~w~~l~~~~~~~l~~~~~~~l~-~~~~~~~~~~v~~iy~plarli 60 (311)
T PRK05439 6 EFSPYLEFSREQWAALRDSTPLTLTEEELERLR-GLNDPISLEEVAEIYLPLSRLL 60 (311)
T ss_pred CCCCceeECHHHHHHHHhcCCCCCCHHHHHHhh-cCCCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999987776643666665533 2333333 45577777666655
No 52
>PF07813 LTXXQ: LTXXQ motif family protein; InterPro: IPR012899 This five residue motif is found in a number of bacterial proteins bearing similarity to the protein CpxP (P32158 from SWISSPROT). This is a periplasmic protein that aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH []. Another member of this family, Spy (P77754 from SWISSPROT) is also a periplasmic protein that may be involved in the response to stress []. The homology between CpxP and Spy may indicate that these two proteins are functionally related []. The motif is found repeated twice in many members of this entry. ; GO: 0042597 periplasmic space; PDB: 3ITF_B 3QZC_B 3OEO_D 3O39_A.
Probab=22.34 E-value=1.8e+02 Score=18.19 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 033573 84 VSAVGKAGGEKWKSLTDAIKKEHWMV 109 (116)
Q Consensus 84 ~~eisK~lge~Wk~Ls~eEK~~Y~e~ 109 (116)
...+.......+..|+++++..|.+.
T Consensus 74 ~~~~~~~~~~~~~vLt~eQk~~~~~l 99 (100)
T PF07813_consen 74 MEERAKAQHALYAVLTPEQKEKFDQL 99 (100)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 35566778889999999999998753
No 53
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=22.20 E-value=4.4 Score=35.99 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=39.5
Q ss_pred CCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 033573 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIK 103 (116)
Q Consensus 59 P~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK 103 (116)
-+++|++|..+.+..+-.+||++ .+++++.+.|..|..|+..-+
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v-~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTV-GFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCc-ccceeEEeecCCcccCccccc
Confidence 45789999999999999999999 999999999999999995444
No 54
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=20.66 E-value=1.5e+02 Score=21.09 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=11.9
Q ss_pred hhcCCHHHHHHHHHH
Q 033573 95 WKSLTDAIKKEHWMV 109 (116)
Q Consensus 95 Wk~Ls~eEK~~Y~e~ 109 (116)
|+.||.+||.-..-.
T Consensus 44 W~~LT~~EKkAlY~i 58 (136)
T cd00922 44 WKQLTLEEKKALYRI 58 (136)
T ss_pred HhhCCHHHHhhHhhh
Confidence 999999998765543
No 55
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.29 E-value=89 Score=24.04 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=21.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 88 GKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 88 sK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
...||.-|+.+|+++++.|.+.....
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~y 102 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTY 102 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHH
Confidence 45688999999999999999766543
Done!