Query 033573
Match_columns 116
No_of_seqs 163 out of 1055
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.9 1.4E-23 4.7E-28 139.2 9.0 70 43-113 8-77 (90)
2 2co9_A Thymus high mobility gr 99.9 9.9E-23 3.4E-27 138.0 9.5 69 44-113 6-74 (102)
3 2eqz_A High mobility group pro 99.9 1.8E-22 6.3E-27 132.5 9.5 68 45-113 5-74 (86)
4 1k99_A Upstream binding factor 99.9 7.2E-23 2.5E-27 138.2 6.5 66 47-113 2-67 (99)
5 2d7l_A WD repeat and HMG-box D 99.9 1.8E-22 6.2E-27 132.4 8.1 61 52-113 2-63 (81)
6 2e6o_A HMG box-containing prot 99.9 3E-22 1E-26 131.9 8.8 66 47-113 9-74 (87)
7 1hme_A High mobility group pro 99.9 2.1E-22 7.3E-27 129.2 7.5 63 50-113 1-63 (77)
8 1cg7_A Protein (NON histone pr 99.9 9.1E-23 3.1E-27 136.0 4.0 68 45-113 10-77 (93)
9 1hry_A Human SRY; DNA, DNA-bin 99.9 5.8E-22 2E-26 126.9 7.5 61 52-113 1-61 (76)
10 2crj_A SWI/SNF-related matrix- 99.9 9.9E-22 3.4E-26 130.6 8.3 63 50-113 2-64 (92)
11 2lhj_A High mobility group pro 99.8 8.6E-23 2.9E-27 136.9 1.2 69 44-113 11-81 (97)
12 2cs1_A PMS1 protein homolog 1; 99.8 3.3E-21 1.1E-25 128.0 8.6 63 50-113 2-64 (92)
13 1aab_A High mobility group pro 99.8 6.8E-22 2.3E-26 128.7 4.8 63 50-113 2-66 (83)
14 1j46_A SRY, sex-determining re 99.8 4.9E-21 1.7E-25 125.4 8.8 61 52-113 1-61 (85)
15 1wz6_A HMG-box transcription f 99.8 4.2E-21 1.4E-25 124.7 8.0 62 51-113 3-64 (82)
16 3f27_D Transcription factor SO 99.8 1E-20 3.5E-25 122.8 7.8 61 52-113 3-63 (83)
17 4a3n_A Transcription factor SO 99.8 1.1E-20 3.7E-25 119.1 7.2 59 54-113 1-59 (71)
18 4euw_A Transcription factor SO 99.8 2.2E-20 7.4E-25 127.4 8.6 64 49-113 23-86 (106)
19 1wxl_A Single-strand recogniti 99.8 1.7E-20 6E-25 119.5 7.6 58 53-113 1-58 (73)
20 2gzk_A Sex-determining region 99.8 2.4E-20 8.2E-25 133.8 9.2 67 46-113 79-145 (159)
21 1i11_A Transcription factor SO 99.8 1.4E-20 4.7E-25 122.0 7.1 60 53-113 2-61 (81)
22 3nm9_A HMG-D, high mobility gr 99.8 1.6E-20 5.3E-25 119.7 7.1 58 53-113 1-58 (73)
23 1gt0_D Transcription factor SO 99.8 2.7E-20 9.1E-25 120.2 8.1 59 54-113 1-59 (80)
24 2lef_A LEF-1 HMG, protein (lym 99.8 3.5E-20 1.2E-24 121.4 8.6 59 54-113 1-59 (86)
25 3u2b_C Transcription factor SO 99.8 2.6E-20 9E-25 119.7 7.7 59 54-113 1-59 (79)
26 1ckt_A High mobility group 1 p 99.8 2.3E-20 8E-25 117.8 6.3 58 55-113 1-60 (71)
27 2yuk_A Myeloid/lymphoid or mix 99.8 2.1E-21 7.3E-26 130.0 -0.8 62 47-113 14-77 (90)
28 2yrq_A High mobility group pro 99.8 1.4E-19 4.9E-24 131.6 8.2 66 47-113 93-158 (173)
29 2yrq_A High mobility group pro 99.8 3.4E-19 1.2E-23 129.7 9.1 67 46-113 6-74 (173)
30 1v64_A Nucleolar transcription 99.8 2.2E-19 7.5E-24 123.0 7.2 63 46-113 7-70 (108)
31 2cto_A Novel protein; high mob 99.8 1.2E-19 4.1E-24 121.9 5.0 62 49-113 4-68 (93)
32 3fgh_A Transcription factor A, 99.7 1.6E-18 5.6E-23 108.5 5.9 55 54-113 1-55 (67)
33 1l8y_A Upstream binding factor 99.7 3.2E-18 1.1E-22 114.8 7.5 59 53-113 2-60 (91)
34 1v63_A Nucleolar transcription 99.7 8.8E-18 3E-22 113.7 7.8 60 51-113 4-63 (101)
35 3tmm_A Transcription factor A, 99.7 7.6E-18 2.6E-22 128.8 6.2 64 49-113 35-98 (238)
36 3tq6_A Transcription factor A, 99.7 1.1E-17 3.9E-22 126.1 6.8 61 52-113 6-66 (214)
37 2gzk_A Sex-determining region 99.7 2.6E-16 9E-21 112.7 8.4 60 53-113 2-61 (159)
38 3tq6_A Transcription factor A, 99.6 4.3E-17 1.5E-21 122.9 1.9 62 47-113 106-167 (214)
39 3tmm_A Transcription factor A, 99.6 2.1E-17 7.1E-22 126.4 -1.7 62 47-113 138-199 (238)
40 2qgu_A Probable signal peptide 60.2 5.9 0.0002 28.9 2.8 34 79-113 70-104 (211)
41 3mhp_C TIC62_peptide, ferredox 29.0 14 0.00048 18.6 0.3 11 56-66 2-12 (26)
42 2yua_A Williams-beuren syndrom 29.0 1.1E+02 0.0036 19.0 5.2 41 68-108 36-80 (99)
43 1hbk_A ACBP, acyl-COA binding 26.6 35 0.0012 21.5 2.0 51 63-115 31-85 (89)
44 2cb8_A Acyl-COA-binding protei 26.0 37 0.0013 21.3 2.0 51 63-115 29-83 (87)
45 2och_A Hypothetical protein DN 23.4 1.1E+02 0.0038 17.7 3.8 39 68-107 27-68 (73)
46 2o37_A Protein SIS1; HSP40, J- 22.7 1.3E+02 0.0043 18.4 4.1 41 67-107 26-68 (92)
47 2xv9_A ABA-1A1 repeat UNIT; li 22.3 1.5E+02 0.0052 20.2 4.7 36 79-115 91-126 (134)
48 2dn9_A DNAJ homolog subfamily 20.8 1E+02 0.0035 18.1 3.3 40 68-107 26-70 (79)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.90 E-value=1.4e-23 Score=139.19 Aligned_cols=70 Identities=27% Similarity=0.453 Sum_probs=65.1
Q ss_pred cccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 43 ~kk~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.++++++.+||+.|+||+|||||||+++|..|+.+||++ ++.||+++||++|+.|++++|++|+++|...
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 77 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAAL 77 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345566779999999999999999999999999999999 9999999999999999999999999999764
No 2
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=9.9e-23 Score=137.95 Aligned_cols=69 Identities=28% Similarity=0.440 Sum_probs=63.9
Q ss_pred ccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 44 kk~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+++++.+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++|++++|++|+++|...
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 74 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAA 74 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 33456678999999999999999999999999999999 9999999999999999999999999998754
No 3
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=132.50 Aligned_cols=68 Identities=28% Similarity=0.413 Sum_probs=62.7
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 45 k~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s--~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++++..+||+.|+||+|||||||+++|..|+.+||++ + +.||+++||++|++||++||.+|+++|...
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 74 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEV-PVNFAEFSKKCSERWKTMSGKEKSKFDEMAKAD 74 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTS-CCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455679999999999999999999999999999998 5 699999999999999999999999998754
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.87 E-value=7.2e-23 Score=138.19 Aligned_cols=66 Identities=29% Similarity=0.377 Sum_probs=62.5
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 47 kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+++.+||+.|+||+|||||||+++|..|+.+||++ +++||+++||++|++||+++|++|++.|...
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 67 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQRE 67 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999 9999999999999999999999999998754
No 5
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=132.37 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=58.5
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~vk~e~P~~~s-~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+++.||||+|||||||+++|..|+.+||++ + +.||+++||++|++|+++||++|+++|...
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999 8 999999999999999999999999998753
No 6
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=131.88 Aligned_cols=66 Identities=26% Similarity=0.465 Sum_probs=62.6
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 47 kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++..+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++|+++||++|+++|..+
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 74 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKAL 74 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999 9999999999999999999999999998764
No 7
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.87 E-value=2.1e-22 Score=129.18 Aligned_cols=63 Identities=41% Similarity=0.654 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++||+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|+.||+++|.+|++.|...
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 63 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 63 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999 9999999999999999999999999998764
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.86 E-value=9.1e-23 Score=135.97 Aligned_cols=68 Identities=38% Similarity=0.563 Sum_probs=63.6
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 45 k~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++++..+||+.|+||+|||||||+++|..|..+||++ ++.||+++||++|++||+++|++|+++|...
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 77 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQAD 77 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999 9999999999999999999999999998753
No 9
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.86 E-value=5.8e-22 Score=126.87 Aligned_cols=61 Identities=30% Similarity=0.424 Sum_probs=57.2
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
||+.|+||+|||||||+++|..|+.+||++ ++++|+++||++|++||+++|++|+++|...
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 61 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999 9999999999999999999999999998764
No 10
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.86 E-value=9.9e-22 Score=130.56 Aligned_cols=63 Identities=24% Similarity=0.388 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|...
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 64 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKE 64 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999 9999999999999999999999999998754
No 11
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.85 E-value=8.6e-23 Score=136.89 Aligned_cols=69 Identities=38% Similarity=0.532 Sum_probs=64.0
Q ss_pred ccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 44 kk~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s--~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+++++..+||+.|+||+|||||||+++|..|..+||++ + +.+|+++||++|++||+++|++|+++|...
T Consensus 11 ~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 81 (97)
T 2lhj_A 11 RRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDED 81 (97)
T ss_dssp CCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHH
T ss_pred cccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44566779999999999999999999999999999999 8 999999999999999999999999998753
No 12
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=128.02 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
..||+.|+||+|||||||+++|..|+.+||++ ++.||+++||++|+.|++++|++|+++|...
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 64 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKD 64 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999 9999999999999999999999999998753
No 13
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.85 E-value=6.8e-22 Score=128.75 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s--~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++||+.|+||+|||||||+++|..|+.+||++ + +.+|+++||++|++||+++|.+|+++|...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~-~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 66 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDA-SVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTT-CCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999998 5 599999999999999999999999998754
No 14
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.85 E-value=4.9e-21 Score=125.40 Aligned_cols=61 Identities=30% Similarity=0.423 Sum_probs=58.5
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.|+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|++|+++|...
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 61 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999 9999999999999999999999999998764
No 15
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.84 E-value=4.2e-21 Score=124.71 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=59.6
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.|++.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|++|+++|...
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 64 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEY 64 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999 9999999999999999999999999998764
No 16
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.83 E-value=1e-20 Score=122.81 Aligned_cols=61 Identities=28% Similarity=0.394 Sum_probs=55.3
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.++.|+||+|||||||+++|..|..+||++ ++++|+++||++|+.|++++|.+|+++|...
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 63 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERL 63 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999 9999999999999999999999999998764
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.83 E-value=1.1e-20 Score=119.06 Aligned_cols=59 Identities=29% Similarity=0.415 Sum_probs=53.3
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+.|+||+|||||||+++|..+..+||++ ++++|+++||++|++||+++|.+|+++|...
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 59 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERL 59 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 9999999999999999999999999998764
No 18
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=127.39 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=57.3
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 49 k~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
..+|++.|+||+|||||||+++|..|..+||++ ++.+|+++||++|+.|+++||++|+++|...
T Consensus 23 ~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 86 (106)
T 4euw_A 23 SSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERL 86 (106)
T ss_dssp -----CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999 9999999999999999999999999998764
No 19
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.7e-20 Score=119.50 Aligned_cols=58 Identities=33% Similarity=0.554 Sum_probs=55.6
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|+.|+||+|||||||+++|..|+.+||++ +++||+++||++|++| ++|.+|+++|...
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~ 58 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKD 58 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHH
Confidence 78999999999999999999999999999 9999999999999999 8999999998764
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.83 E-value=2.4e-20 Score=133.85 Aligned_cols=67 Identities=40% Similarity=0.630 Sum_probs=62.9
Q ss_pred ccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 46 ~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+++..+||+.|+||+|||||||+++|..|..+||++ ++++|+++||++|++||+++|++|+++|...
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~ 145 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 145 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999 9999999999999999999999999998764
No 21
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=1.4e-20 Score=122.03 Aligned_cols=60 Identities=27% Similarity=0.442 Sum_probs=56.7
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||++||++|++.|..+
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 61 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARL 61 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999 9999999999999999999999999988764
No 22
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.82 E-value=1.6e-20 Score=119.74 Aligned_cols=58 Identities=38% Similarity=0.647 Sum_probs=55.1
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.++||||+|||||||+++|..|+.+||++ +++||+++||++|++|++ |++|+++|...
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~ 58 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKA 58 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHH
Confidence 47899999999999999999999999999 999999999999999998 99999998764
No 23
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.82 E-value=2.7e-20 Score=120.25 Aligned_cols=59 Identities=29% Similarity=0.444 Sum_probs=56.4
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|+.||+++|.+|+++|...
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 59 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRL 59 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 9999999999999999999999999998764
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=3.5e-20 Score=121.42 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=56.4
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+.|+||+|||||||+++|..|..+||++ ++++|+++||++|++||+++|++|+++|...
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~ 59 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKE 59 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999 9999999999999999999999999998764
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=2.6e-20 Score=119.73 Aligned_cols=59 Identities=25% Similarity=0.372 Sum_probs=56.4
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+.|+||+|||||||+++|..|..+||++ ++++|+++||++|++||+++|.+|+++|...
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 59 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERL 59 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999 9999999999999999999999999998764
No 26
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.81 E-value=2.3e-20 Score=117.79 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=54.6
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 55 ~PKRP~say~lF~~e~R~~vk~e~P~~~s--~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+|+||+|||||||+++|..++.+||++ + +.+|+++||++|++||+++|.+|+++|...
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~-~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 60 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDA-SVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTC-CCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCC-CCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 599999999999999999999999998 5 599999999999999999999999998753
No 27
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-21 Score=129.96 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=57.6
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 47 kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s--~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+..+|||+|+||+|||||||+++|+.|+.+||++ + +.||+ ++|+.|+++||+||+++|..+
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~ 77 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDN 77 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999 8 99998 999999999999999999865
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=131.62 Aligned_cols=66 Identities=41% Similarity=0.639 Sum_probs=62.2
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 47 kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+++.+||+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|+.||+++|++|+++|...
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~ 158 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKL 158 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999 9999999999999999999999999998754
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=129.67 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=62.1
Q ss_pred ccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPN--VKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 46 ~kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~--~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+...+||+.|+||+|||||||+++|..|..+||+ + ++.||+++||++|++||++||++|+++|...
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 74 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASV-NFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 74 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 6 8999999999999999999999999998753
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.79 E-value=2.2e-19 Score=123.00 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=58.0
Q ss_pred ccccCCCCCCC-CCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 46 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 46 ~kkk~kdp~~P-KRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+.++.+||+.| |||+|||||||+++|..|+ ++ ++.||+++||++|+.|+++||++|+++|...
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~ 70 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQK 70 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45667899999 9999999999999999887 78 9999999999999999999999999998764
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=121.93 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=57.8
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHhhcCCHHHHHHHHHHHHhh
Q 033573 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 49 k~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~l---ge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
...+++.||||+|||||||+++|..|+.+ ++ ++.||+++| |++|+.|+++||++|+++|..+
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~ 68 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREW 68 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999988 78 899999999 9999999999999999999865
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=108.53 Aligned_cols=55 Identities=31% Similarity=0.314 Sum_probs=50.1
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 54 ~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|.||||+|||+|||+++|..++.. ++++|++.||++|++||++||.+|+++|...
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~ 55 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKED 55 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSS-----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 589999999999999999999755 4579999999999999999999999998754
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.75 E-value=3.2e-18 Score=114.76 Aligned_cols=59 Identities=15% Similarity=0.054 Sum_probs=55.6
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.|.|+||+|||+||+++.|..|..+||+ ++++|++.||++|++|+++||++|+++|...
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~d 60 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAED 60 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998 6899999999999999999999999998764
No 34
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=8.8e-18 Score=113.70 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=52.6
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 51 kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
.+.++||||+|||||||++++. ..+++++ ++.||++.||++|+.|+++||++|+++|...
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~ 63 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQ 63 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567899999999999999975 3455668 8999999999999999999999999998754
No 35
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=128.82 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 49 k~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
...||+.|+||+|||||||+++|..|+.+||++ ++.||+++||++|+.|+++||.+|+++|...
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~ 98 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAE 98 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999 9999999999999999999999999998753
No 36
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=126.06 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=58.1
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 52 dp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
+|+.|+||+|||||||+++|..|..+||++ +++||+++||++|++||++||.+|+++|...
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~ 66 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAE 66 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHH
Confidence 478999999999999999999999999999 9999999999999999999999999998753
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.66 E-value=2.6e-16 Score=112.70 Aligned_cols=60 Identities=30% Similarity=0.447 Sum_probs=57.5
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 53 p~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|+.|+||++|||||++++|..|..+||++ ++.||+++||++|++||+++|.+|+++|...
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~ 61 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKL 61 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHH
Confidence 67899999999999999999999999999 9999999999999999999999999998764
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.63 E-value=4.3e-17 Score=122.92 Aligned_cols=62 Identities=29% Similarity=0.252 Sum_probs=55.0
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 47 kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++..+||+.|+||+|||||||+++|..|..+ ++.+|+++||++|++|++++|++|+++|...
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~ 167 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKED 167 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCS-----SHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456899999999999999999999988644 5569999999999999999999999998764
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.1e-17 Score=126.38 Aligned_cols=62 Identities=29% Similarity=0.252 Sum_probs=55.0
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 47 kkk~kdp~~PKRP~say~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
++..+||+.|+||+|||||||+++|..|..+ ++.+|++.||++|+.|++++|++|+++|..+
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~-----~p~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~ 199 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGD-----SPQEKLKTVKENWKNLSDSEKELYIQHAKED 199 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCS-----SHHHHHHHHHHHHHTCCTTTTHHHHHHHHHH
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456899999999999999999999888644 4568999999999999999999999998764
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=60.15 E-value=5.9 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHhh
Q 033573 79 PNVKAVSAVGK-AGGEKWKSLTDAIKKEHWMVKFVI 113 (116)
Q Consensus 79 P~~~s~~eisK-~lge~Wk~Ls~eEK~~Y~e~a~~~ 113 (116)
|-. ++..+++ .||..|+.+|+++++.|.+....+
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~ 104 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSL 104 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHH
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHH
Confidence 555 6777765 468999999999999999866544
No 41
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=29.03 E-value=14 Score=18.63 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.4
Q ss_pred CCCCCchhHhH
Q 033573 56 PKRPPSAFFVF 66 (116)
Q Consensus 56 PKRP~say~lF 66 (116)
..||+|+|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 35889998776
No 42
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.99 E-value=1.1e+02 Score=19.04 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHH
Q 033573 68 EEFRKVYKQEHPNVKA----VSAVGKAGGEKWKSLTDAIKKEHWM 108 (116)
Q Consensus 68 ~e~R~~vk~e~P~~~s----~~eisK~lge~Wk~Ls~eEK~~Y~e 108 (116)
..+|.....-||+... ..+....|.+-|..|++..+..-.|
T Consensus 36 ~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 36 AAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4556666778888721 3678889999999999776554443
No 43
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=26.62 E-value=35 Score=21.50 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=30.5
Q ss_pred hHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---cCCHHH-HHHHHHHHHhhhc
Q 033573 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWK---SLTDAI-KKEHWMVKFVICT 115 (116)
Q Consensus 63 y~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk---~Ls~eE-K~~Y~e~a~~~~~ 115 (116)
|-||-|.....+....|++. .-+.+.--+-|+ .||.++ ++.|.+....+++
T Consensus 31 YalyKQAt~Gd~~~~~Pg~~--d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l~~ 85 (89)
T 1hbk_A 31 YKYYKQSTIGNCNIKEPSAH--KYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFP 85 (89)
T ss_dssp HHHHHHHHTCSCCSCCCCTT--SHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcCCCCCCCCCcc--CHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 44555444433333446652 334444566784 477665 9999999888775
No 44
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=26.02 E-value=37 Score=21.32 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=30.2
Q ss_pred hHhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc---CCHHH-HHHHHHHHHhhhc
Q 033573 63 FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS---LTDAI-KKEHWMVKFVICT 115 (116)
Q Consensus 63 y~lF~~e~R~~vk~e~P~~~s~~eisK~lge~Wk~---Ls~eE-K~~Y~e~a~~~~~ 115 (116)
|-||-|.....+....|++. .-+.+.--+-|+. ||.++ ++.|.+....|+.
T Consensus 29 YalyKQAt~Gd~~~~~Pg~~--d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 29 YGHYKQATVGDINTERPGML--DFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp HHHHHHHHTCSCCSCCCCTT--CHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhCCCCCCCCCcc--cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44454444433333446652 3344555677855 66555 9999998888764
No 45
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.42 E-value=1.1e+02 Score=17.65 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHH-HHHH
Q 033573 68 EEFRKVYKQEHPNVKAV--SAVGKAGGEKWKSLTDAIK-KEHW 107 (116)
Q Consensus 68 ~e~R~~vk~e~P~~~s~--~eisK~lge~Wk~Ls~eEK-~~Y~ 107 (116)
..+|.....-||+. .. .+....|.+-|..|++.++ ..|.
T Consensus 27 ~ayr~l~~~~HPD~-~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (73)
T 2och_A 27 KAYRKMALKFHPDK-NPDGAEQFKQISQAYEVLSDEKKRQIYD 68 (73)
T ss_dssp HHHHHHHHHTCTTT-CTTCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHCcCC-CcCHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 44566667778886 33 4778889999999986664 4554
No 46
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=22.73 E-value=1.3e+02 Score=18.40 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHH-HHHH
Q 033573 67 LEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAIK-KEHW 107 (116)
Q Consensus 67 ~~e~R~~vk~e~P~~~-s~~eisK~lge~Wk~Ls~eEK-~~Y~ 107 (116)
...+|.....-||+.. ...+....|.+-|..|++.++ ..|.
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3455666677888862 235778889999999987665 4454
No 47
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=22.34 E-value=1.5e+02 Score=20.21 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhc
Q 033573 79 PNVKAVSAVGKAGGEKWKSLTDAIKKEHWMVKFVICT 115 (116)
Q Consensus 79 P~~~s~~eisK~lge~Wk~Ls~eEK~~Y~e~a~~~~~ 115 (116)
.+. +..+|...+.++-..+++++++.+.+....+|-
T Consensus 91 sg~-~~e~l~~Kv~e~i~~i~dE~kk~~ae~~~~~Ck 126 (134)
T 2xv9_A 91 SGA-SKEELKAKVEEALHAVTDEEKKQYIADFGPACK 126 (134)
T ss_dssp HTC-CHHHHHHHHHHHTTSCCCHHHHHHHHHTHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Confidence 356 789999999999999999999999999988883
No 48
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.84 E-value=1e+02 Score=18.08 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHHH-HHH
Q 033573 68 EEFRKVYKQEHPNVK----AVSAVGKAGGEKWKSLTDAIKK-EHW 107 (116)
Q Consensus 68 ~e~R~~vk~e~P~~~----s~~eisK~lge~Wk~Ls~eEK~-~Y~ 107 (116)
..+|.....-||+.. ...+....|.+-|..|++..+. .|.
T Consensus 26 ~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 70 (79)
T 2dn9_A 26 KAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYD 70 (79)
T ss_dssp HHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 455666677788852 1357788999999999866544 454
Done!