BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033576
         (116 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
          Atwrky4
 pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
          W-Box Dna
          Length = 78

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)

Query: 10 LPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDG 64
          L +DGY W+KYGQK +K     RSY+KC    C  +K  E   +DP  V   Y+G
Sbjct: 16 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEG 70


>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof
          Atwrky1, An Sa-Induced And Partially Npr1-Dependent
          Transcription Factor
          Length = 76

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 13 DGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDG 64
          DGY W+KYGQK +K     RSY++C    C  KK  E  + D   +   Y+G
Sbjct: 16 DGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEG 67


>pdb|1IGQ|A Chain A, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGQ|B Chain B, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGQ|C Chain C, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGQ|D Chain D, C-Terminal Domain Of Transcriptional Repressor Protein
          Korb
 pdb|1IGU|A Chain A, C-Terminal Domain Of The Transcriptional Repressor
          Protein Korb
 pdb|1IGU|B Chain B, C-Terminal Domain Of The Transcriptional Repressor
          Protein Korb
          Length = 62

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 7/34 (20%)

Query: 2  DRRVHRLVL----PEDGYEWKKY---GQKFIKNI 28
          D R  RL+L    P +GY W KY   GQ+F  N+
Sbjct: 18 DERPARLILNRRPPAEGYAWLKYEDDGQEFEANL 51


>pdb|1OP4|A Chain A, Solution Structure Of Neural Cadherin Prodomain
          Length = 159

 Score = 25.8 bits (55), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/59 (18%), Positives = 29/59 (49%)

Query: 7  RLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGV 65
           + L + G+    Y     K++ + +     + S+C  K++ ++ +S+P + ++  DG 
Sbjct: 28 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGT 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,700,746
Number of Sequences: 62578
Number of extensions: 70598
Number of successful extensions: 109
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 4
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)