Query 033576
Match_columns 116
No_of_seqs 126 out of 629
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 6E-39 2E-43 215.0 3.4 68 5-72 8-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.3E-38 4.4E-43 214.3 4.1 69 4-72 10-78 (78)
3 2rpr_A Flywch-type zinc finger 72.4 1.5 5.1E-05 28.2 1.4 49 10-71 23-74 (87)
4 1cz6_A Protein (androctonin); 47.0 4.5 0.00016 21.0 0.2 8 33-40 16-23 (26)
5 2lv4_A Putative outer membrane 30.0 59 0.002 23.3 3.8 21 42-67 101-123 (146)
6 1xiw_B T-cell surface glycopro 21.6 15 0.0005 23.4 -0.6 26 12-37 17-52 (79)
7 1ter_A Tertiapin; toxin; NMR { 21.5 21 0.00071 18.5 0.1 11 15-25 13-23 (26)
8 2l1s_A Uncharacterized protein 19.2 35 0.0012 22.1 0.9 21 5-25 42-62 (83)
9 1odh_A MGCM1; transcription fa 19.2 85 0.0029 23.2 3.0 16 58-73 144-159 (174)
10 3ed7_A Tsase, TS, thymidylate 16.4 26 0.00089 27.9 -0.4 10 14-23 118-127 (295)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=6e-39 Score=215.01 Aligned_cols=68 Identities=34% Similarity=0.646 Sum_probs=65.5
Q ss_pred ccccCCCCCCchhhhhccccccCCCCCCCccccccccccchhhhhhccCCCCeEEEEEeccCCCCCCC
Q 033576 5 VHRLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHTHHG 72 (116)
Q Consensus 5 ~~~~~~~~DGy~WRKYGQK~ikg~~~pR~YyrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p~ 72 (116)
.+++++++|||.|||||||.|||++|||+||||++.+|+|+|+|||+++|+.+|+|||+|+|||+.|.
T Consensus 8 ~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 8 QTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp ECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred cCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999886
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.3e-38 Score=214.31 Aligned_cols=69 Identities=38% Similarity=0.742 Sum_probs=65.6
Q ss_pred cccccCCCCCCchhhhhccccccCCCCCCCccccccccccchhhhhhccCCCCeEEEEEeccCCCCCCC
Q 033576 4 RVHRLVLPEDGYEWKKYGQKFIKNIRKFRSYFKCQESSCMAKKRAEWCTSDPTNVRIVYDGVHSHTHHG 72 (116)
Q Consensus 4 ~~~~~~~~~DGy~WRKYGQK~ikg~~~pR~YyrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p~ 72 (116)
..+++++++|||.|||||||.|||++|||+||||++++|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus 10 t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 10 TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp CCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 447788999999999999999999999999999999999999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=72.40 E-value=1.5 Score=28.16 Aligned_cols=49 Identities=16% Similarity=0.386 Sum_probs=29.5
Q ss_pred CCCCCchhhhhccccccCCCCCCCccccccc---cccchhhhhhccCCCCeEEEEEeccCCCCCC
Q 033576 10 LPEDGYEWKKYGQKFIKNIRKFRSYFKCQES---SCMAKKRAEWCTSDPTNVRIVYDGVHSHTHH 71 (116)
Q Consensus 10 ~~~DGy~WRKYGQK~ikg~~~pR~YyrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~~p 71 (116)
+.-|||.-.+--+ ...+.|.+|+.. +|.|+-.... + . +.-.+.|||++.
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~-~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---H-R---IMVMRSHCHQPD 74 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---T-E---EEECSCCSSCCC
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---C-C---EECCCCcCCCCc
Confidence 4456776654211 123689999973 5999854432 1 1 235788999754
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=47.05 E-value=4.5 Score=21.04 Aligned_cols=8 Identities=38% Similarity=1.182 Sum_probs=6.6
Q ss_pred Cccccccc
Q 033576 33 SYFKCQES 40 (116)
Q Consensus 33 ~YyrCt~~ 40 (116)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999874
No 5
>2lv4_A Putative outer membrane or exported protein; antivirulence, adhesion, protein binding; NMR {Salmonella enterica subsp}
Probab=30.03 E-value=59 Score=23.35 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=15.9
Q ss_pred ccchhhhhhccCCCC--eEEEEEeccCC
Q 033576 42 CMAKKRAEWCTSDPT--NVRIVYDGVHS 67 (116)
Q Consensus 42 C~akK~Vqr~~~d~~--~~~vtY~G~H~ 67 (116)
|++||-. .|. +..|||.|.|+
T Consensus 101 g~~Kkg~-----~PGeY~q~iTY~G~s~ 123 (146)
T 2lv4_A 101 GPLKKEN-----VPGKYTQVITYRGHSN 123 (146)
T ss_dssp CCCEECS-----SSSEEEEEEEEETTCC
T ss_pred cceecCC-----CCcceEEEEEEcCCCC
Confidence 8998843 354 66799999886
No 6
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=21.55 E-value=15 Score=23.36 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=18.3
Q ss_pred CCCchhhhhcccc--------cc--CCCCCCCcccc
Q 033576 12 EDGYEWKKYGQKF--------IK--NIRKFRSYFKC 37 (116)
Q Consensus 12 ~DGy~WRKYGQK~--------ik--g~~~pR~YyrC 37 (116)
.+++.|.|-|... +. ...-||++|.|
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C 52 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRC 52 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEE
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEe
Confidence 4568899887641 33 44558999999
No 7
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=21.49 E-value=21 Score=18.48 Aligned_cols=11 Identities=45% Similarity=0.827 Sum_probs=7.7
Q ss_pred chhhhhccccc
Q 033576 15 YEWKKYGQKFI 25 (116)
Q Consensus 15 y~WRKYGQK~i 25 (116)
.-|+|.|.|..
T Consensus 13 mcwkkcgkk~~ 23 (26)
T 1ter_A 13 MCWKKCGKKXX 23 (26)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHhCcccc
Confidence 46999998865
No 8
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=19.18 E-value=35 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.669 Sum_probs=15.5
Q ss_pred ccccCCCCCCchhhhhccccc
Q 033576 5 VHRLVLPEDGYEWKKYGQKFI 25 (116)
Q Consensus 5 ~~~~~~~~DGy~WRKYGQK~i 25 (116)
.-.+..+..||+|-+.|..-+
T Consensus 42 ~~~L~~PPrGy~Wvrv~~dyv 62 (83)
T 2l1s_A 42 QRNLPAPDAGSHWTYMGGNYV 62 (83)
T ss_dssp TSSCCCCCTTEEEEECSSEEE
T ss_pred HCCCCccCCCCEEEEECCcEE
Confidence 356778888999988776544
No 9
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=19.17 E-value=85 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=11.7
Q ss_pred EEEEEeccCCCCCCCC
Q 033576 58 VRIVYDGVHSHTHHGS 73 (116)
Q Consensus 58 ~~vtY~G~H~h~~p~~ 73 (116)
+...=+|.|+|+.|..
T Consensus 144 ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 144 IFFQSKGEHDHPRPET 159 (174)
T ss_dssp EEEEEECCCCSCCCCC
T ss_pred EEEecccccCCCCCCC
Confidence 3334469999999975
No 10
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=16.40 E-value=26 Score=27.91 Aligned_cols=10 Identities=30% Similarity=1.451 Sum_probs=8.5
Q ss_pred Cchhhhhccc
Q 033576 14 GYEWKKYGQK 23 (116)
Q Consensus 14 Gy~WRKYGQK 23 (116)
|++||.+|.+
T Consensus 118 G~QwR~~~~~ 127 (295)
T 3ed7_A 118 GFQWRHFGAE 127 (295)
T ss_dssp HHHHHHBTCC
T ss_pred hhhhhccCCc
Confidence 7999999865
Done!