Query 033577
Match_columns 116
No_of_seqs 161 out of 237
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 7.8E-39 1.7E-43 232.5 5.1 81 36-116 36-119 (119)
2 PLN03221 rapid alkalinization 100.0 1.2E-37 2.6E-42 230.6 7.0 86 31-116 35-137 (137)
3 PF05498 RALF: Rapid ALkaliniz 100.0 9E-30 1.9E-34 169.0 3.8 66 51-116 1-66 (66)
4 PF12273 RCR: Chitin synthesis 60.5 5.9 0.00013 28.4 1.6 7 4-10 2-8 (130)
5 PF15240 Pro-rich: Proline-ric 53.6 7.1 0.00015 30.7 1.2 14 13-26 4-17 (179)
6 PF15284 PAGK: Phage-encoded v 48.6 26 0.00056 23.3 3.1 18 1-18 1-18 (61)
7 PRK02710 plastocyanin; Provisi 37.3 40 0.00086 23.7 2.8 19 1-19 1-19 (119)
8 TIGR02052 MerP mercuric transp 32.1 40 0.00087 20.4 1.9 15 1-15 1-15 (92)
9 PF06404 PSK: Phytosulfokine p 23.6 46 0.001 22.8 1.2 12 62-73 62-74 (81)
10 TIGR01614 PME_inhib pectineste 22.0 52 0.0011 23.8 1.3 13 1-13 1-13 (178)
11 COG4744 Uncharacterized conser 21.2 1.1E+02 0.0024 22.7 2.9 22 1-22 25-46 (121)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=7.8e-39 Score=232.53 Aligned_cols=81 Identities=75% Similarity=1.350 Sum_probs=75.1
Q ss_pred cccCCCccccchhhhhc---ccccCCcchhcchhhccccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 033577 36 WVPAKARCQGSMAECMA---DEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAIT 112 (116)
Q Consensus 36 ~~~~~~~C~gs~~ec~~---~eE~~m~se~~RR~L~~~~yIsYgaL~~d~vpC~~rG~sy~nC~p~~~aNpY~RGCs~i~ 112 (116)
|.+....|+|+++||++ |+|++||||++||+|++++||||+||++|++||+++|++||||++++|+|||+|||++||
T Consensus 36 ~~~~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~~ANPY~RGCs~IT 115 (119)
T PLN03222 36 FMPIDSKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAIT 115 (119)
T ss_pred ccCCCCcCCCCHHHhhcccccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCCccccCCCCCCCCCCCCchhhc
Confidence 44445579999999985 679999999999999999999999999999999999999999999899999999999999
Q ss_pred ccCC
Q 033577 113 RCRS 116 (116)
Q Consensus 113 rCr~ 116 (116)
||||
T Consensus 116 rCrR 119 (119)
T PLN03222 116 RCRR 119 (119)
T ss_pred cccC
Confidence 9997
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=100.00 E-value=1.2e-37 Score=230.61 Aligned_cols=86 Identities=66% Similarity=1.198 Sum_probs=76.9
Q ss_pred ccccccccCCCccccchhhhhc--------------c---cccCCcchhcchhhccccccccccCcCCCCCCCCCCCCCC
Q 033577 31 DQRLSWVPAKARCQGSMAECMA--------------D---EEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYY 93 (116)
Q Consensus 31 ~~~~~~~~~~~~C~gs~~ec~~--------------~---eE~~m~se~~RR~L~~~~yIsYgaL~~d~vpC~~rG~sy~ 93 (116)
++++.|.+....|+|+++||++ + +|++||||++||+|++++||||+||++|++||+++|++||
T Consensus 35 ~~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYy 114 (137)
T PLN03221 35 EFAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYY 114 (137)
T ss_pred cccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCcc
Confidence 3445567767789999999971 2 2778999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCC
Q 033577 94 NCHAGAQANPYSRGCSAITRCRS 116 (116)
Q Consensus 94 nC~p~~~aNpY~RGCs~i~rCr~ 116 (116)
||++++|+|||+|||++||||||
T Consensus 115 nC~~~~pANPY~RGCs~ITRCrR 137 (137)
T PLN03221 115 NCRRGAQANPYSRGCSAITRCRR 137 (137)
T ss_pred ccCCCCCCCCCCCCcccccccCC
Confidence 99998999999999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.96 E-value=9e-30 Score=169.05 Aligned_cols=66 Identities=68% Similarity=1.185 Sum_probs=62.9
Q ss_pred hcccccCCcchhcchhhccccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCC
Q 033577 51 MADEEFGMDSEINRRILATTKYISYGALQRDSVPCSQRGASYYNCHAGAQANPYSRGCSAITRCRS 116 (116)
Q Consensus 51 ~~~eE~~m~se~~RR~L~~~~yIsYgaL~~d~vpC~~rG~sy~nC~p~~~aNpY~RGCs~i~rCr~ 116 (116)
|+|+|+.|++|++||+|++++||||+||++|++||.++|.+|+||.+++|+|||+|||++||||||
T Consensus 1 ~ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 1 MEEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred ChhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence 467899999999999999999999999999999999999999999889999999999999999997
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.47 E-value=5.9 Score=28.41 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 033577 4 TLAFLLC 10 (116)
Q Consensus 4 ~~~~~l~ 10 (116)
|+.|++|
T Consensus 2 W~l~~ii 8 (130)
T PF12273_consen 2 WVLFAII 8 (130)
T ss_pred eeeHHHH
Confidence 4444443
No 5
>PF15240 Pro-rich: Proline-rich
Probab=53.56 E-value=7.1 Score=30.70 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=6.4
Q ss_pred HHHHHHHhhhhhhh
Q 033577 13 LFLAALMMDSSTVV 26 (116)
Q Consensus 13 ~~l~~~~~~~~~~~ 26 (116)
|||.+||.+++|+-
T Consensus 4 VLLSvALLALSSAQ 17 (179)
T PF15240_consen 4 VLLSVALLALSSAQ 17 (179)
T ss_pred HHHHHHHHHhhhcc
Confidence 34444444544443
No 6
>PF15284 PAGK: Phage-encoded virulence factor
Probab=48.65 E-value=26 Score=23.26 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=10.9
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 033577 1 MAKTLAFLLCVYLFLAAL 18 (116)
Q Consensus 1 m~~~~~~~l~~~~~l~~~ 18 (116)
|-+.-++||.++++|+++
T Consensus 1 Mkk~ksifL~l~~~LsA~ 18 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAA 18 (61)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 556667777766545443
No 7
>PRK02710 plastocyanin; Provisional
Probab=37.26 E-value=40 Score=23.70 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=9.3
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 033577 1 MAKTLAFLLCVYLFLAALM 19 (116)
Q Consensus 1 m~~~~~~~l~~~~~l~~~~ 19 (116)
|++.+..++..+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSF 19 (119)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 5655555555444443333
No 8
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=32.08 E-value=40 Score=20.36 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHHHHH
Q 033577 1 MAKTLAFLLCVYLFL 15 (116)
Q Consensus 1 m~~~~~~~l~~~~~l 15 (116)
|-|+..+|++++++.
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (92)
T TIGR02052 1 MKKLATLLALFVLTS 15 (92)
T ss_pred ChhHHHHHHHHHHhc
Confidence 667777777655433
No 9
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=23.57 E-value=46 Score=22.75 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=8.3
Q ss_pred hcchhhcc-cccc
Q 033577 62 INRRILAT-TKYI 73 (116)
Q Consensus 62 ~~RR~L~~-~~yI 73 (116)
..||.|.+ .-||
T Consensus 62 L~RRtL~AHlDYI 74 (81)
T PF06404_consen 62 LMRRTLAAHLDYI 74 (81)
T ss_pred HHHHHHHHHhhhe
Confidence 48999874 3466
No 10
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=21.99 E-value=52 Score=23.80 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=8.0
Q ss_pred ChhHHHHHHHHHH
Q 033577 1 MAKTLAFLLCVYL 13 (116)
Q Consensus 1 m~~~~~~~l~~~~ 13 (116)
|++.+.+++++++
T Consensus 1 ~~~~~~~~~~~~~ 13 (178)
T TIGR01614 1 MASSLSLLLFLLL 13 (178)
T ss_pred CchhHHHHHHHHH
Confidence 6777766665443
No 11
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=1.1e+02 Score=22.74 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhhh
Q 033577 1 MAKTLAFLLCVYLFLAALMMDS 22 (116)
Q Consensus 1 m~~~~~~~l~~~~~l~~~~~~~ 22 (116)
|||++=.++++.+.|+.+++++
T Consensus 25 vANLfDaamVfsva~LI~lv~S 46 (121)
T COG4744 25 VANLFDAAMVFSVALLIALVMS 46 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5788877777655444444443
Done!