Query 033577
Match_columns 116
No_of_seqs 161 out of 237
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e9t_A HITF, intestinal trefoi 22.3 67 0.0023 19.7 2.6 16 81-96 17-32 (59)
2 2f93_B Sensory rhodopsin II tr 20.3 79 0.0027 22.3 3.0 19 48-66 96-114 (122)
3 1cz6_A Protein (androctonin); 15.6 47 0.0016 17.6 0.6 13 85-97 10-22 (26)
4 1as5_A Conotoxin Y-PIIIE; neur 8.6 2.8E+02 0.0095 14.6 3.0 18 92-116 7-24 (26)
5 2lat_A Dolichyl-diphosphooligo 6.9 4E+02 0.014 15.0 3.0 13 3-15 12-24 (37)
6 3mhp_C TIC62_peptide, ferredox 6.8 2.8E+02 0.0095 14.7 1.8 15 71-85 8-22 (26)
7 1e0f_I Haemadin, factor IIA; c 6.8 1.5E+02 0.0051 18.1 0.7 9 53-61 47-55 (57)
8 1pcp_A Porcine spasmolytic pro 6.2 1.3E+02 0.0044 20.3 0.3 21 80-108 14-34 (106)
9 4ank_A Transthyretin; hormone 6.1 1.2E+02 0.0042 21.8 0.1 31 1-31 1-31 (147)
10 1rkl_A Dolichyl-diphosphooligo 6.0 4.5E+02 0.015 14.7 2.7 20 2-21 11-30 (36)
No 1
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=22.28 E-value=67 Score=19.67 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 033577 81 DSVPCSQRGASYYNCH 96 (116)
Q Consensus 81 d~vpC~~rG~sy~nC~ 96 (116)
+++.|+.+|.+...|.
T Consensus 17 ~R~dCG~pgit~~~C~ 32 (59)
T 1e9t_A 17 DRVDCGYPHVTPKECN 32 (59)
T ss_dssp TCCCCCCSSCCTTTTT
T ss_pred hcccCCCCCCCHHHHh
Confidence 4455544344444444
No 2
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=20.34 E-value=79 Score=22.31 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=0.0
Q ss_pred hhhhcccccCCcchhcchh
Q 033577 48 AECMADEEFGMDSEINRRI 66 (116)
Q Consensus 48 ~ec~~~eE~~m~se~~RR~ 66 (116)
.|=+++.|++.|-|+.||-
T Consensus 96 A~aIa~GdLDVdiet~RR~ 114 (122)
T 2f93_B 96 ASRMGDGDLDVELETRREN 114 (122)
T ss_dssp -------------------
T ss_pred HHHHHcCCCCCcccccccc
Confidence 3445567777777888874
No 3
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=15.63 E-value=47 Score=17.59 Aligned_cols=13 Identities=46% Similarity=1.331 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCC
Q 033577 85 CSQRGASYYNCHA 97 (116)
Q Consensus 85 C~~rG~sy~nC~p 97 (116)
|.+||.-||.|..
T Consensus 10 crrrggcyykctn 22 (26)
T 1cz6_A 10 CRRRGGCYYKCTN 22 (26)
T ss_dssp CCSSSCCEEEECC
T ss_pred HHhcCceEEEccC
Confidence 7777777888864
No 4
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=8.57 E-value=2.8e+02 Score=14.58 Aligned_cols=18 Identities=39% Similarity=1.025 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCC
Q 033577 92 YYNCHAGAQANPYSRGCSAITRCRS 116 (116)
Q Consensus 92 y~nC~p~~~aNpY~RGCs~i~rCr~ 116 (116)
|..|. || .||+...-||+
T Consensus 7 yg~cr------~~-pgc~~a~cc~~ 24 (26)
T 1as5_A 7 YGKCR------RY-PGCSSASCCQR 24 (26)
T ss_dssp TTCCC------CC-TTCTTCCCSCC
T ss_pred ccccc------cC-CCcchhhhhcc
Confidence 55665 34 78888777764
No 5
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=6.91 E-value=4e+02 Score=15.03 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q 033577 3 KTLAFLLCVYLFL 15 (116)
Q Consensus 3 ~~~~~~l~~~~~l 15 (116)
+.+.+++++++++
T Consensus 12 n~lG~~~~~LIVl 24 (37)
T 2lat_A 12 NMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 6
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=6.84 E-value=2.8e+02 Score=14.71 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=11.7
Q ss_pred cccccccCcCCCCCC
Q 033577 71 KYISYGALQRDSVPC 85 (116)
Q Consensus 71 ~yIsYgaL~~d~vpC 85 (116)
.|+.|.+|+...-|.
T Consensus 8 py~~Y~dlKPPsSPs 22 (26)
T 3mhp_C 8 PYTAYDDLKPPSSPS 22 (26)
T ss_dssp TTTTBTTSSCSSCSS
T ss_pred ccccccccCCCCCCC
Confidence 588999999866554
No 7
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=6.75 E-value=1.5e+02 Score=18.15 Aligned_cols=9 Identities=56% Similarity=0.737 Sum_probs=5.8
Q ss_pred ccccCCcch
Q 033577 53 DEEFGMDSE 61 (116)
Q Consensus 53 ~eE~~m~se 61 (116)
=|||++|.|
T Consensus 47 feefeidee 55 (57)
T 1e0f_I 47 FEEFEIDEE 55 (57)
T ss_dssp SCCCCCCCC
T ss_pred cceeecccc
Confidence 367777654
No 8
>1pcp_A Porcine spasmolytic protein; growth factor; NMR {Sus scrofa} SCOP: g.16.1.1 g.16.1.1 PDB: 1pos_A 1psp_A 2psp_A
Probab=6.23 E-value=1.3e+02 Score=20.31 Aligned_cols=21 Identities=29% Similarity=0.789 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 033577 80 RDSVPCSQRGASYYNCHAGAQANPYSRGC 108 (116)
Q Consensus 80 ~d~vpC~~rG~sy~nC~p~~~aNpY~RGC 108 (116)
.+++.|+..|-+...|. .|||
T Consensus 14 ~~R~~Cg~~git~~~C~--------~~GC 34 (106)
T 1pcp_A 14 KNRVNCGFPGITSDQCF--------TSGC 34 (106)
T ss_dssp CCCCCSSCTTCCSHHHH--------TTTC
T ss_pred hhcccCCCCCCCHHHHh--------hcCC
No 9
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=6.10 E-value=1.2e+02 Score=21.76 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhhccccc
Q 033577 1 MAKTLAFLLCVYLFLAALMMDSSTVVDAGVD 31 (116)
Q Consensus 1 m~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 31 (116)
|++...|+|.++.|+++..+.-..+.++...
T Consensus 1 m~~~~~~l~~la~l~~~s~a~p~~~~~sk~P 31 (147)
T 4ank_A 1 MASHRLLLLCLAGLVFVSEAGPTGTGESKCP 31 (147)
T ss_dssp -----------------------------CC
T ss_pred CchHHHHHHHHHHHHhhcccCCcCCCCCCCC
No 10
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=6.05 E-value=4.5e+02 Score=14.74 Aligned_cols=20 Identities=10% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 033577 2 AKTLAFLLCVYLFLAALMMD 21 (116)
Q Consensus 2 ~~~~~~~l~~~~~l~~~~~~ 21 (116)
|+++.+++++++++-+.+.+
T Consensus 11 an~lG~~~~~LIvlYH~v~~ 30 (36)
T 1rkl_A 11 AITFGIVMMTLIVIYHAVDS 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhc
Done!