Query 033580
Match_columns 116
No_of_seqs 125 out of 1225
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 3.6E-18 7.8E-23 110.2 9.9 86 1-87 71-156 (160)
2 KOG0027 Calmodulin and related 99.7 2.7E-16 5.9E-21 101.4 9.1 86 1-87 60-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.6 2.5E-14 5.5E-19 91.4 9.3 87 1-88 85-171 (172)
4 cd05022 S-100A13 S-100A13: S-1 99.5 3.1E-14 6.7E-19 84.2 7.4 68 20-88 6-76 (89)
5 KOG0027 Calmodulin and related 99.5 9.4E-14 2E-18 89.5 9.3 96 19-115 5-101 (151)
6 PF13499 EF-hand_7: EF-hand do 99.5 7.9E-14 1.7E-18 77.8 7.0 62 23-85 1-66 (66)
7 PTZ00183 centrin; Provisional 99.5 2.4E-13 5.2E-18 87.3 10.2 85 2-87 70-154 (158)
8 PTZ00184 calmodulin; Provision 99.5 3.2E-13 6.9E-18 85.7 10.5 84 2-86 64-147 (149)
9 KOG0034 Ca2+/calmodulin-depend 99.5 3.8E-13 8.2E-18 89.3 10.0 86 2-88 84-176 (187)
10 cd05027 S-100B S-100B: S-100B 99.5 3.8E-13 8.2E-18 79.4 8.4 67 20-87 6-79 (88)
11 KOG0041 Predicted Ca2+-binding 99.5 3E-13 6.4E-18 89.5 8.2 95 20-115 97-191 (244)
12 KOG0031 Myosin regulatory ligh 99.5 9.7E-13 2.1E-17 83.7 9.8 86 1-87 80-165 (171)
13 COG5126 FRQ1 Ca2+-binding prot 99.4 3.2E-12 6.9E-17 82.7 9.5 93 17-115 15-108 (160)
14 cd05031 S-100A10_like S-100A10 99.4 4.1E-12 9E-17 75.8 7.9 67 20-87 6-79 (94)
15 cd05025 S-100A1 S-100A1: S-100 99.4 5.7E-12 1.2E-16 74.9 8.2 68 20-87 7-80 (92)
16 KOG0030 Myosin essential light 99.4 6.9E-12 1.5E-16 78.6 8.5 84 1-86 65-150 (152)
17 cd05026 S-100Z S-100Z: S-100Z 99.4 7.2E-12 1.6E-16 74.7 8.3 68 20-88 8-82 (93)
18 cd05029 S-100A6 S-100A6: S-100 99.4 7.8E-12 1.7E-16 73.8 8.3 68 20-88 8-80 (88)
19 KOG0037 Ca2+-binding protein, 99.4 1E-11 2.3E-16 83.1 9.6 78 2-87 111-188 (221)
20 smart00027 EH Eps15 homology d 99.3 8.8E-12 1.9E-16 74.6 7.5 68 19-89 7-74 (96)
21 cd00052 EH Eps15 homology doma 99.3 1.2E-11 2.7E-16 68.8 7.0 60 25-87 2-61 (67)
22 cd00213 S-100 S-100: S-100 dom 99.3 1.3E-11 2.9E-16 72.6 7.3 68 20-88 6-80 (88)
23 PTZ00183 centrin; Provisional 99.3 3.5E-11 7.6E-16 77.2 9.2 93 18-114 13-105 (158)
24 PF13833 EF-hand_8: EF-hand do 99.3 1.9E-11 4.2E-16 65.6 6.4 52 35-87 1-53 (54)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.3 9E-11 1.9E-15 78.2 10.1 113 2-115 44-163 (193)
26 KOG0031 Myosin regulatory ligh 99.3 5.8E-11 1.3E-15 75.7 8.4 90 18-115 28-117 (171)
27 PTZ00184 calmodulin; Provision 99.2 1.6E-10 3.5E-15 73.2 9.8 67 20-87 9-75 (149)
28 KOG0044 Ca2+ sensor (EF-Hand s 99.2 9.4E-11 2E-15 78.1 8.2 85 1-87 80-175 (193)
29 cd05023 S-100A11 S-100A11: S-1 99.2 1.8E-10 3.9E-15 68.1 8.4 68 20-88 7-81 (89)
30 cd00051 EFh EF-hand, calcium b 99.2 1.3E-10 2.8E-15 62.7 7.2 61 24-85 2-62 (63)
31 KOG0030 Myosin essential light 99.1 4.2E-10 9E-15 70.7 7.9 74 16-90 5-80 (152)
32 PF14658 EF-hand_9: EF-hand do 99.1 3.8E-10 8.3E-15 62.6 6.5 61 26-87 2-64 (66)
33 KOG0036 Predicted mitochondria 99.1 1.4E-09 3E-14 78.9 9.8 94 2-102 68-161 (463)
34 cd00252 SPARC_EC SPARC_EC; ext 99.1 9.5E-10 2E-14 68.0 7.5 62 20-86 46-107 (116)
35 KOG0038 Ca2+-binding kinase in 99.1 8.7E-10 1.9E-14 70.0 7.2 86 2-87 88-177 (189)
36 cd05030 calgranulins Calgranul 99.0 1.2E-09 2.6E-14 64.5 6.8 68 20-88 6-80 (88)
37 KOG0028 Ca2+-binding protein ( 99.0 5E-09 1.1E-13 67.3 8.0 67 21-88 32-98 (172)
38 PLN02964 phosphatidylserine de 98.9 1.3E-08 2.7E-13 78.5 9.7 89 18-115 139-231 (644)
39 cd05024 S-100A10 S-100A10: A s 98.8 3.9E-08 8.4E-13 58.1 7.9 67 20-88 6-77 (91)
40 KOG0036 Predicted mitochondria 98.7 1.4E-07 3E-12 68.8 9.1 74 18-92 10-84 (463)
41 PF12763 EF-hand_4: Cytoskelet 98.7 2.1E-07 4.5E-12 56.5 7.8 66 18-87 6-71 (104)
42 PF00036 EF-hand_1: EF hand; 98.6 5.4E-08 1.2E-12 45.7 3.6 27 24-50 2-28 (29)
43 PLN02964 phosphatidylserine de 98.6 5.5E-07 1.2E-11 69.6 9.6 63 24-87 181-243 (644)
44 KOG0034 Ca2+/calmodulin-depend 98.6 2.2E-06 4.7E-11 57.2 10.9 109 1-115 50-163 (187)
45 PF13405 EF-hand_6: EF-hand do 98.6 1.3E-07 2.9E-12 44.9 3.6 30 23-52 1-31 (31)
46 PF00036 EF-hand_1: EF hand; 98.5 2.2E-07 4.8E-12 43.6 3.3 28 60-87 1-28 (29)
47 PF14788 EF-hand_10: EF hand; 98.4 1.1E-06 2.4E-11 46.2 5.5 49 38-87 1-49 (51)
48 KOG0040 Ca2+-binding actin-bun 98.4 1.4E-06 3.1E-11 71.7 8.2 90 18-110 2249-2345(2399)
49 PF13833 EF-hand_8: EF-hand do 98.3 1.7E-06 3.7E-11 46.0 4.9 49 1-50 4-53 (54)
50 KOG0037 Ca2+-binding protein, 98.3 1.1E-05 2.4E-10 54.5 9.4 67 21-87 56-122 (221)
51 KOG0377 Protein serine/threoni 98.3 3.8E-06 8.1E-11 62.1 7.5 68 22-89 547-617 (631)
52 PRK12309 transaldolase/EF-hand 98.2 7.8E-06 1.7E-10 60.2 8.1 59 16-88 328-386 (391)
53 KOG4223 Reticulocalbin, calume 98.2 8.8E-06 1.9E-10 57.8 6.8 94 18-115 73-216 (325)
54 PF13202 EF-hand_5: EF hand; P 98.1 3.8E-06 8.1E-11 38.0 3.1 24 24-47 1-24 (25)
55 KOG4223 Reticulocalbin, calume 98.0 1.1E-05 2.5E-10 57.2 5.1 83 1-84 216-302 (325)
56 PF13499 EF-hand_7: EF-hand do 98.0 3E-05 6.4E-10 42.7 5.9 55 61-115 2-56 (66)
57 KOG0751 Mitochondrial aspartat 98.0 2.7E-05 5.8E-10 58.4 6.9 99 2-114 91-194 (694)
58 PF10591 SPARC_Ca_bdg: Secrete 97.9 3.7E-06 7.9E-11 51.8 1.3 61 20-83 52-112 (113)
59 KOG2643 Ca2+ binding protein, 97.9 8.7E-06 1.9E-10 59.9 3.4 88 2-93 216-320 (489)
60 KOG0046 Ca2+-binding actin-bun 97.9 6.2E-05 1.4E-09 56.7 7.1 72 18-91 15-89 (627)
61 KOG2643 Ca2+ binding protein, 97.9 3.6E-05 7.8E-10 56.8 5.3 43 2-49 303-345 (489)
62 PF13202 EF-hand_5: EF hand; P 97.7 5.5E-05 1.2E-09 34.1 2.8 24 62-85 2-25 (25)
63 KOG4666 Predicted phosphate ac 97.6 0.00015 3.3E-09 51.9 5.2 84 1-87 275-359 (412)
64 cd05022 S-100A13 S-100A13: S-1 97.6 0.00021 4.7E-09 42.1 4.9 52 1-52 25-77 (89)
65 cd05029 S-100A6 S-100A6: S-100 97.6 0.00038 8.3E-09 40.9 5.8 52 1-52 28-81 (88)
66 cd05030 calgranulins Calgranul 97.5 0.00026 5.7E-09 41.5 5.0 52 1-52 26-81 (88)
67 PF13405 EF-hand_6: EF-hand do 97.5 0.00017 3.7E-09 33.9 3.1 27 60-86 1-27 (31)
68 cd05026 S-100Z S-100Z: S-100Z 97.4 0.0006 1.3E-08 40.4 5.6 51 2-52 29-83 (93)
69 cd05023 S-100A11 S-100A11: S-1 97.4 0.00062 1.4E-08 40.1 5.6 52 1-52 27-82 (89)
70 KOG4251 Calcium binding protei 97.4 0.00016 3.4E-09 50.1 3.0 67 21-87 100-168 (362)
71 smart00054 EFh EF-hand, calciu 97.4 0.00026 5.7E-09 31.4 2.9 26 24-49 2-27 (29)
72 cd05027 S-100B S-100B: S-100B 97.4 0.00088 1.9E-08 39.4 5.6 51 2-52 27-81 (88)
73 cd00051 EFh EF-hand, calcium b 97.3 0.0011 2.4E-08 34.8 5.6 47 1-48 16-62 (63)
74 KOG4065 Uncharacterized conser 97.3 0.0016 3.5E-08 40.1 6.7 62 23-84 68-142 (144)
75 cd05031 S-100A10_like S-100A10 97.2 0.00051 1.1E-08 40.6 3.7 52 1-52 26-81 (94)
76 PF09279 EF-hand_like: Phospho 97.2 0.00091 2E-08 38.6 4.4 69 23-92 1-74 (83)
77 cd00213 S-100 S-100: S-100 dom 97.1 0.0023 4.9E-08 37.2 5.4 52 1-52 26-81 (88)
78 cd00052 EH Eps15 homology doma 97.0 0.0037 7.9E-08 34.0 5.7 48 1-51 15-62 (67)
79 smart00027 EH Eps15 homology d 97.0 0.0027 5.8E-08 37.7 5.3 48 1-51 26-73 (96)
80 cd05025 S-100A1 S-100A1: S-100 97.0 0.0024 5.3E-08 37.5 5.0 51 2-52 28-82 (92)
81 KOG3555 Ca2+-binding proteogly 96.9 0.0025 5.3E-08 46.2 5.4 66 21-91 249-314 (434)
82 KOG1029 Endocytic adaptor prot 96.9 0.0017 3.6E-08 51.4 4.9 65 20-87 193-257 (1118)
83 KOG0038 Ca2+-binding kinase in 96.9 0.0044 9.4E-08 39.8 5.9 88 26-114 75-164 (189)
84 smart00054 EFh EF-hand, calciu 96.9 0.0015 3.1E-08 28.8 2.9 27 61-87 2-28 (29)
85 KOG2562 Protein phosphatase 2 96.9 0.0038 8.2E-08 46.7 6.3 81 2-83 332-420 (493)
86 KOG0377 Protein serine/threoni 96.8 0.012 2.5E-07 44.2 8.1 68 21-89 463-577 (631)
87 PF14788 EF-hand_10: EF hand; 96.7 0.0094 2E-07 31.4 5.3 49 2-51 2-50 (51)
88 cd05024 S-100A10 S-100A10: A s 96.7 0.011 2.3E-07 35.1 6.1 51 2-52 24-78 (91)
89 cd00252 SPARC_EC SPARC_EC; ext 96.7 0.0074 1.6E-07 37.3 5.4 43 1-48 64-106 (116)
90 KOG1955 Ral-GTPase effector RA 96.4 0.0089 1.9E-07 45.4 5.5 67 19-88 228-294 (737)
91 KOG2562 Protein phosphatase 2 96.3 0.0063 1.4E-07 45.6 4.0 64 22-89 275-345 (493)
92 PF05517 p25-alpha: p25-alpha 96.1 0.16 3.4E-06 32.9 9.3 62 27-88 7-70 (154)
93 KOG0042 Glycerol-3-phosphate d 95.8 0.03 6.4E-07 43.3 5.8 76 21-97 592-667 (680)
94 KOG4578 Uncharacterized conser 95.8 0.0067 1.5E-07 43.7 2.2 64 22-88 333-399 (421)
95 PF08726 EFhand_Ca_insen: Ca2+ 95.7 0.0055 1.2E-07 34.4 1.1 55 20-83 4-65 (69)
96 KOG0751 Mitochondrial aspartat 95.4 0.14 3.1E-06 39.2 8.0 81 5-88 56-137 (694)
97 PF14658 EF-hand_9: EF-hand do 95.4 0.11 2.3E-06 28.9 5.6 45 6-50 19-64 (66)
98 PLN02952 phosphoinositide phos 94.8 0.46 1E-05 37.3 9.5 84 2-87 17-110 (599)
99 KOG0169 Phosphoinositide-speci 94.2 0.24 5.2E-06 39.5 6.8 70 21-91 135-204 (746)
100 KOG1029 Endocytic adaptor prot 94.2 0.24 5.2E-06 39.8 6.7 62 23-87 14-77 (1118)
101 KOG4347 GTPase-activating prot 94.1 0.11 2.3E-06 40.7 4.7 78 2-81 535-612 (671)
102 PRK12309 transaldolase/EF-hand 94.1 0.22 4.7E-06 37.1 6.1 45 54-115 329-373 (391)
103 KOG3866 DNA-binding protein of 94.0 0.11 2.4E-06 37.5 4.3 65 25-90 247-327 (442)
104 KOG2243 Ca2+ release channel ( 94.0 0.12 2.7E-06 44.2 5.0 60 27-88 4062-4121(5019)
105 KOG4251 Calcium binding protei 93.9 0.38 8.2E-06 33.8 6.6 64 23-87 282-345 (362)
106 PF12763 EF-hand_4: Cytoskelet 93.9 0.2 4.4E-06 30.3 4.7 34 18-51 39-72 (104)
107 PF08976 DUF1880: Domain of un 93.3 0.092 2E-06 32.4 2.6 34 54-87 2-35 (118)
108 KOG0035 Ca2+-binding actin-bun 93.1 0.66 1.4E-05 37.9 7.7 69 21-90 746-819 (890)
109 PF09069 EF-hand_3: EF-hand; 92.4 1.4 3E-05 26.0 7.3 64 21-88 2-76 (90)
110 KOG0041 Predicted Ca2+-binding 91.8 2.1 4.5E-05 29.2 7.7 80 1-82 115-198 (244)
111 PF05042 Caleosin: Caleosin re 91.5 2.8 6.2E-05 27.7 7.9 65 22-87 7-124 (174)
112 KOG0998 Synaptic vesicle prote 89.6 0.15 3.3E-06 41.5 1.0 67 19-88 280-346 (847)
113 PF09279 EF-hand_like: Phospho 89.1 0.61 1.3E-05 26.6 3.1 50 1-50 15-69 (83)
114 KOG4666 Predicted phosphate ac 88.1 1.9 4E-05 31.6 5.4 65 22-87 259-324 (412)
115 KOG0040 Ca2+-binding actin-bun 87.9 2.9 6.4E-05 36.6 7.1 81 2-83 2270-2357(2399)
116 cd07313 terB_like_2 tellurium 87.9 3.7 8E-05 24.2 6.0 55 35-89 12-67 (104)
117 KOG0039 Ferric reductase, NADH 86.8 2.4 5.3E-05 33.7 6.0 83 2-91 4-93 (646)
118 KOG1707 Predicted Ras related/ 86.1 1.2 2.6E-05 34.9 3.8 62 21-87 314-377 (625)
119 KOG2871 Uncharacterized conser 85.7 0.86 1.9E-05 33.8 2.7 67 17-84 304-371 (449)
120 PF12875 DUF3826: Protein of u 84.4 3.5 7.5E-05 27.6 4.9 63 47-111 86-148 (188)
121 PLN02222 phosphoinositide phos 84.4 6.3 0.00014 31.1 7.1 67 20-88 23-91 (581)
122 PLN02228 Phosphoinositide phos 84.0 8.7 0.00019 30.2 7.6 70 17-88 19-93 (567)
123 COG4103 Uncharacterized protei 83.5 9.5 0.00021 24.5 6.6 59 26-88 34-95 (148)
124 PLN02230 phosphoinositide phos 82.9 9.2 0.0002 30.3 7.4 68 18-87 25-102 (598)
125 TIGR01848 PHA_reg_PhaR polyhyd 82.5 8.7 0.00019 23.4 7.9 76 29-106 10-96 (107)
126 PF08414 NADPH_Ox: Respiratory 81.9 5.3 0.00012 24.0 4.6 60 22-87 30-92 (100)
127 KOG1265 Phospholipase C [Lipid 81.8 20 0.00043 30.0 8.9 83 3-89 206-301 (1189)
128 PF05042 Caleosin: Caleosin re 79.4 14 0.0003 24.6 6.3 65 21-86 95-165 (174)
129 KOG1955 Ral-GTPase effector RA 79.1 2.5 5.5E-05 32.7 3.2 34 17-50 260-293 (737)
130 KOG4347 GTPase-activating prot 77.7 7.1 0.00015 31.0 5.3 62 39-100 535-596 (671)
131 PF10025 DUF2267: Uncharacteri 77.2 10 0.00022 23.4 5.1 98 4-112 2-105 (125)
132 PF01023 S_100: S-100/ICaBP ty 77.1 7.7 0.00017 19.5 3.8 29 22-50 6-36 (44)
133 PTZ00373 60S Acidic ribosomal 76.6 15 0.00032 22.6 5.6 54 24-83 5-58 (112)
134 KOG3449 60S acidic ribosomal p 76.1 15 0.00033 22.5 5.4 57 24-86 3-59 (112)
135 PF12174 RST: RCD1-SRO-TAF4 (R 75.8 7.2 0.00016 21.9 3.7 45 2-50 9-53 (70)
136 PF12174 RST: RCD1-SRO-TAF4 (R 74.1 3.5 7.5E-05 23.1 2.1 47 38-88 8-54 (70)
137 KOG2301 Voltage-gated Ca2+ cha 73.9 4.6 0.0001 35.5 3.7 70 18-89 1413-1486(1592)
138 PF07308 DUF1456: Protein of u 73.8 13 0.00029 20.6 5.6 46 39-85 14-59 (68)
139 KOG4004 Matricellular protein 73.3 1.6 3.5E-05 29.7 0.8 57 28-87 193-250 (259)
140 PF11116 DUF2624: Protein of u 73.1 16 0.00035 21.3 7.9 50 37-87 13-62 (85)
141 KOG0169 Phosphoinositide-speci 72.7 29 0.00063 28.3 7.5 69 23-92 206-279 (746)
142 PLN02223 phosphoinositide phos 72.6 23 0.0005 27.8 6.9 71 17-88 11-93 (537)
143 PF14513 DAG_kinase_N: Diacylg 72.3 6.2 0.00013 25.2 3.2 54 35-91 4-64 (138)
144 PF05099 TerB: Tellurite resis 71.5 17 0.00036 22.4 5.2 54 34-87 35-89 (140)
145 PLN02952 phosphoinositide phos 70.1 19 0.0004 28.7 6.0 53 35-88 13-66 (599)
146 KOG1954 Endocytosis/signaling 68.9 9.1 0.0002 28.9 3.8 55 25-83 447-501 (532)
147 cd05833 Ribosomal_P2 Ribosomal 68.0 25 0.00054 21.5 5.6 56 26-87 5-60 (109)
148 cd00086 homeodomain Homeodomai 67.8 15 0.00032 18.8 4.8 41 19-67 10-50 (59)
149 PF14513 DAG_kinase_N: Diacylg 65.8 10 0.00022 24.2 3.2 34 2-35 49-82 (138)
150 PF03672 UPF0154: Uncharacteri 64.8 18 0.0004 19.9 3.7 33 36-69 29-61 (64)
151 KOG3555 Ca2+-binding proteogly 64.5 10 0.00022 28.1 3.3 68 22-89 211-280 (434)
152 PRK00523 hypothetical protein; 62.4 21 0.00045 20.2 3.7 32 36-68 37-68 (72)
153 PF03979 Sigma70_r1_1: Sigma-7 62.0 8 0.00017 22.1 2.1 43 23-70 8-50 (82)
154 cd08330 CARD_ASC_NALP1 Caspase 61.1 29 0.00063 19.8 5.1 55 34-94 25-79 (82)
155 PF07879 PHB_acc_N: PHB/PHA ac 59.4 20 0.00043 19.8 3.2 22 29-50 10-31 (64)
156 PF03732 Retrotrans_gag: Retro 58.6 31 0.00067 19.3 4.8 12 39-50 27-38 (96)
157 KOG1707 Predicted Ras related/ 57.4 28 0.0006 27.7 4.8 64 22-86 195-264 (625)
158 PF00404 Dockerin_1: Dockerin 56.9 16 0.00034 15.4 2.3 14 32-45 1-14 (21)
159 COG2818 Tag 3-methyladenine DN 56.9 5.8 0.00012 26.6 1.0 44 21-65 54-97 (188)
160 COG3763 Uncharacterized protei 56.8 28 0.00061 19.5 3.5 32 36-68 36-67 (71)
161 PF01885 PTS_2-RNA: RNA 2'-pho 56.5 25 0.00054 23.5 4.0 37 32-69 26-62 (186)
162 KOG4578 Uncharacterized conser 55.2 13 0.00028 27.4 2.5 32 20-51 368-399 (421)
163 PRK00819 RNA 2'-phosphotransfe 54.3 38 0.00082 22.6 4.5 36 33-69 28-63 (179)
164 PRK01844 hypothetical protein; 53.7 34 0.00074 19.3 3.6 32 36-68 36-67 (72)
165 PLN00138 large subunit ribosom 52.5 53 0.0012 20.2 5.5 50 28-83 7-56 (113)
166 TIGR01639 P_fal_TIGR01639 Plas 52.3 37 0.0008 18.3 3.6 32 37-69 8-39 (61)
167 cd07176 terB tellurite resista 52.1 33 0.00071 20.1 3.7 55 34-89 14-72 (111)
168 KOG0998 Synaptic vesicle prote 51.8 11 0.00024 31.1 2.0 63 22-87 11-73 (847)
169 cd07316 terB_like_DjlA N-termi 50.5 49 0.0011 19.2 7.6 55 34-88 11-65 (106)
170 cd08315 Death_TRAILR_DR4_DR5 D 50.5 52 0.0011 19.5 4.3 42 20-68 2-43 (96)
171 PF00046 Homeobox: Homeobox do 50.3 35 0.00076 17.5 4.6 39 20-66 11-49 (57)
172 KOG4070 Putative signal transd 50.3 61 0.0013 21.2 4.8 68 22-89 12-87 (180)
173 PF11829 DUF3349: Protein of u 50.0 54 0.0012 19.6 4.6 52 39-91 20-74 (96)
174 cd04411 Ribosomal_P1_P2_L12p R 49.7 57 0.0012 19.7 6.0 43 39-87 17-59 (105)
175 TIGR03573 WbuX N-acetyl sugar 49.4 51 0.0011 24.1 5.0 12 56-67 303-314 (343)
176 PHA02105 hypothetical protein 47.6 44 0.00096 18.0 3.3 48 38-85 4-55 (68)
177 PF09068 EF-hand_2: EF hand; 46.5 34 0.00075 21.3 3.2 25 25-49 100-124 (127)
178 PRK09430 djlA Dna-J like membr 46.2 1E+02 0.0023 21.7 6.9 53 33-89 66-122 (267)
179 KOG0506 Glutaminase (contains 44.1 72 0.0016 25.0 5.0 61 26-87 90-158 (622)
180 KOG4403 Cell surface glycoprot 44.1 1.5E+02 0.0032 23.0 6.6 80 20-104 66-148 (575)
181 PF02761 Cbl_N2: CBL proto-onc 43.3 68 0.0015 18.7 5.8 51 36-87 20-70 (85)
182 TIGR00135 gatC glutamyl-tRNA(G 42.3 61 0.0013 18.8 3.7 27 39-66 1-27 (93)
183 PF08461 HTH_12: Ribonuclease 41.6 47 0.001 18.1 3.0 37 34-71 9-45 (66)
184 PF09373 PMBR: Pseudomurein-bi 41.2 32 0.0007 16.0 2.0 16 73-88 2-17 (33)
185 PF09336 Vps4_C: Vps4 C termin 40.1 53 0.0012 17.7 3.0 25 38-63 29-53 (62)
186 PRK00034 gatC aspartyl/glutamy 37.8 80 0.0017 18.3 3.8 28 38-66 2-29 (95)
187 PRK06402 rpl12p 50S ribosomal 37.5 97 0.0021 18.9 5.7 40 38-83 16-55 (106)
188 cd08332 CARD_CASP2 Caspase act 37.4 86 0.0019 18.2 4.9 49 35-89 31-79 (90)
189 COG1321 TroR Mn-dependent tran 37.2 73 0.0016 20.6 3.8 52 20-81 8-59 (154)
190 PF15565 Imm16: Immunity prote 37.1 98 0.0021 18.8 6.9 66 39-110 29-95 (106)
191 COG4359 Uncharacterized conser 37.1 1.1E+02 0.0023 21.0 4.5 20 33-52 38-58 (220)
192 PF11020 DUF2610: Domain of un 36.6 50 0.0011 19.1 2.6 42 45-87 35-77 (82)
193 cd08785 CARD_CARD9-like Caspas 32.8 1E+02 0.0023 17.9 4.8 56 34-92 26-81 (86)
194 PRK14981 DNA-directed RNA poly 32.4 96 0.0021 18.9 3.6 13 56-68 79-91 (112)
195 PF12631 GTPase_Cys_C: Catalyt 32.0 95 0.0021 17.1 3.9 46 22-68 23-72 (73)
196 PF07499 RuvA_C: RuvA, C-termi 31.9 75 0.0016 15.9 4.1 39 41-84 3-41 (47)
197 PF13623 SurA_N_2: SurA N-term 30.8 1.5E+02 0.0032 19.0 7.8 40 44-84 95-144 (145)
198 PF06627 DUF1153: Protein of u 30.5 1.2E+02 0.0026 17.9 3.8 35 36-76 47-81 (90)
199 cd08326 CARD_CASP9 Caspase act 30.4 1.1E+02 0.0025 17.5 4.8 51 35-91 27-77 (84)
200 PLN02508 magnesium-protoporphy 30.3 1.3E+02 0.0029 22.3 4.4 89 3-92 22-112 (357)
201 PF13829 DUF4191: Domain of un 29.9 1.3E+02 0.0027 21.0 4.1 36 33-69 162-197 (224)
202 PF11074 DUF2779: Domain of un 28.9 24 0.00052 22.2 0.5 87 18-105 18-106 (130)
203 cd08327 CARD_RAIDD Caspase act 28.6 1.3E+02 0.0029 17.7 4.5 47 35-87 32-78 (94)
204 PF05872 DUF853: Bacterial pro 28.6 2E+02 0.0043 22.6 5.3 89 18-109 124-247 (502)
205 PF01988 VIT1: VIT family; In 28.4 1.2E+02 0.0026 20.5 3.9 32 39-73 80-111 (213)
206 PF06384 ICAT: Beta-catenin-in 27.7 93 0.002 17.9 2.7 23 43-66 21-43 (78)
207 PF12486 DUF3702: ImpA domain 27.7 98 0.0021 20.0 3.1 29 23-51 70-98 (148)
208 PLN02228 Phosphoinositide phos 27.6 2.1E+02 0.0046 22.8 5.5 49 2-50 39-92 (567)
209 cd04790 HTH_Cfa-like_unk Helix 27.6 1.8E+02 0.0039 19.0 6.1 34 34-70 111-147 (172)
210 PRK13778 paaA phenylacetate-Co 27.0 76 0.0016 23.2 2.8 33 73-105 268-309 (314)
211 COG5562 Phage envelope protein 26.8 46 0.001 21.2 1.5 23 65-87 78-100 (137)
212 PF07804 HipA_C: HipA-like C-t 26.8 1.2E+02 0.0027 16.8 3.7 37 75-111 19-55 (79)
213 KOG3077 Uncharacterized conser 26.3 2.5E+02 0.0053 20.1 9.1 73 19-94 61-136 (260)
214 COG5502 Uncharacterized conser 26.3 1.8E+02 0.0039 18.5 4.6 41 72-112 72-112 (135)
215 PF08044 DUF1707: Domain of un 26.3 1.1E+02 0.0024 16.0 2.9 31 35-66 20-50 (53)
216 PF12767 SAGA-Tad1: Transcript 26.1 2.3E+02 0.005 19.7 6.3 68 35-110 5-73 (252)
217 cd07357 HN_L-whirlin_R2_like S 26.1 1.4E+02 0.0031 17.2 3.8 32 56-87 16-47 (81)
218 cd05831 Ribosomal_P1 Ribosomal 25.8 1.6E+02 0.0034 17.7 4.5 46 34-85 13-58 (103)
219 TIGR00624 tag DNA-3-methyladen 25.6 68 0.0015 21.4 2.2 45 21-66 52-96 (179)
220 COG2058 RPP1A Ribosomal protei 25.6 1.7E+02 0.0037 17.9 6.1 44 38-87 16-59 (109)
221 PF02037 SAP: SAP domain; Int 25.3 88 0.0019 14.6 2.3 18 38-56 3-20 (35)
222 PF08672 APC2: Anaphase promot 25.3 1.2E+02 0.0027 16.2 4.0 31 19-50 12-44 (60)
223 COG1859 KptA RNA:NAD 2'-phosph 25.2 1.7E+02 0.0037 20.1 4.1 37 33-70 54-90 (211)
224 PF13331 DUF4093: Domain of un 25.1 1.5E+02 0.0033 17.2 6.4 9 76-84 77-85 (87)
225 PF01325 Fe_dep_repress: Iron 24.8 1.2E+02 0.0027 16.0 4.0 49 20-78 6-54 (60)
226 KOG0046 Ca2+-binding actin-bun 24.4 2.5E+02 0.0053 22.4 5.2 50 2-51 35-86 (627)
227 COG0721 GatC Asp-tRNAAsn/Glu-t 23.9 1.7E+02 0.0036 17.3 3.6 28 38-66 2-29 (96)
228 PF02459 Adeno_terminal: Adeno 23.9 1.9E+02 0.0041 22.9 4.5 45 26-71 459-503 (548)
229 PF14069 SpoVIF: Stage VI spor 23.8 1.6E+02 0.0034 16.9 5.0 45 40-86 29-77 (79)
230 KOG4629 Predicted mechanosensi 23.6 4.3E+02 0.0092 21.9 7.5 60 23-90 405-464 (714)
231 COG1460 Uncharacterized protei 23.6 1.2E+02 0.0026 18.8 2.8 47 1-49 12-58 (114)
232 PRK10353 3-methyl-adenine DNA 23.1 61 0.0013 21.8 1.6 45 21-66 53-97 (187)
233 smart00513 SAP Putative DNA-bi 22.9 99 0.0021 14.3 2.6 18 38-56 3-20 (35)
234 PF04433 SWIRM: SWIRM domain; 22.8 52 0.0011 18.7 1.1 36 29-69 44-79 (86)
235 PF09454 Vps23_core: Vps23 cor 22.5 91 0.002 17.1 2.0 20 73-92 37-56 (65)
236 KOG0035 Ca2+-binding actin-bun 22.2 1.4E+02 0.003 25.2 3.7 44 2-46 805-848 (890)
237 TIGR03685 L21P_arch 50S riboso 22.1 1.9E+02 0.0042 17.4 5.6 43 38-86 16-58 (105)
238 PF12419 DUF3670: SNF2 Helicas 21.9 2.2E+02 0.0047 17.9 4.5 50 35-84 80-138 (141)
239 PF09059 TyeA: TyeA; InterPro 21.7 1.8E+02 0.004 17.0 3.5 57 54-110 19-79 (87)
240 PTZ00315 2'-phosphotransferase 21.2 2.2E+02 0.0049 22.8 4.5 36 33-69 400-435 (582)
241 PF04876 Tenui_NCP: Tenuivirus 20.7 1.8E+02 0.004 19.0 3.4 30 60-89 84-113 (175)
242 PF02671 PAH: Paired amphipath 20.5 1.3E+02 0.0028 14.8 3.4 14 37-50 17-30 (47)
243 KOG2419 Phosphatidylserine dec 20.4 86 0.0019 25.6 2.2 69 25-94 440-540 (975)
244 cd08313 Death_TNFR1 Death doma 20.3 1.9E+02 0.0041 16.5 3.3 25 39-66 9-33 (80)
245 PF06226 DUF1007: Protein of u 20.3 94 0.002 21.1 2.1 23 29-51 57-79 (212)
246 cd05832 Ribosomal_L12p Ribosom 20.0 2.2E+02 0.0048 17.3 5.6 42 38-85 16-57 (106)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=110.16 Aligned_cols=86 Identities=34% Similarity=0.492 Sum_probs=82.5
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQME 80 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~e 80 (116)
.|+|.+|+.+|...++..+..++++.+|+.||++++|+|+..+|+.+++.+| ..+++++++.+++.++.+++|.|+|++
T Consensus 71 ~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~~~e 149 (160)
T COG5126 71 TVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEIDYEE 149 (160)
T ss_pred ccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEeHHH
Confidence 4899999999999998888899999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHh
Q 033580 81 FCVLMFR 87 (116)
Q Consensus 81 F~~~~~~ 87 (116)
|+..+..
T Consensus 150 F~~~~~~ 156 (160)
T COG5126 150 FKKLIKD 156 (160)
T ss_pred HHHHHhc
Confidence 9998875
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.69 E-value=2.7e-16 Score=101.35 Aligned_cols=86 Identities=33% Similarity=0.490 Sum_probs=78.6
Q ss_pred CcChHHHHHHHHhhcCCCCh----HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033580 1 MVDFEDLLPVMADKLGGEGL----INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGAL 76 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~----~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I 76 (116)
.|+|.+|+.++......... .++++.+|+.||.+++|+|+..+|+.+|..+| .+.+.++++.+++..|.+++|.|
T Consensus 60 ~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~dg~i 138 (151)
T KOG0027|consen 60 TIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDGDGKV 138 (151)
T ss_pred eEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCCCCeE
Confidence 48999999999987654333 45999999999999999999999999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHh
Q 033580 77 NQMEFCVLMFR 87 (116)
Q Consensus 77 ~~~eF~~~~~~ 87 (116)
+|++|+.++..
T Consensus 139 ~f~ef~~~m~~ 149 (151)
T KOG0027|consen 139 NFEEFVKMMSG 149 (151)
T ss_pred eHHHHHHHHhc
Confidence 99999999874
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.5e-14 Score=91.38 Aligned_cols=87 Identities=39% Similarity=0.597 Sum_probs=82.9
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQME 80 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~e 80 (116)
.|+|++|+..+...+...++.++++.+|+.+|.+++|+|+..+|+.+...+| .+++++++.+++...+.+++|.|+-++
T Consensus 85 ~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevneeE 163 (172)
T KOG0028|consen 85 KITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNEEE 163 (172)
T ss_pred eechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccHHH
Confidence 3899999999999988888999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhh
Q 033580 81 FCVLMFRL 88 (116)
Q Consensus 81 F~~~~~~~ 88 (116)
|..+|++.
T Consensus 164 F~~imk~t 171 (172)
T KOG0028|consen 164 FIRIMKKT 171 (172)
T ss_pred HHHHHhcC
Confidence 99998753
No 4
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=3.1e-14 Score=84.17 Aligned_cols=68 Identities=25% Similarity=0.240 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhhcc-CCCCcccHHHHHHHHHH-cCCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLMD-KVKGVITTESLKLNAAV-LGLQDLTD-DKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D~-~~~G~i~~~el~~~l~~-~~~~~~~~-~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
....+..+|+.||+ +++|+|+..||+.+++. +| ..+++ ++++.+++.+|.++||.|+|+||+.++...
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45678999999999 99999999999999999 88 88888 999999999999999999999999999864
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.53 E-value=9.4e-14 Score=89.49 Aligned_cols=96 Identities=32% Similarity=0.420 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHH-HH
Q 033580 19 GLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEE-SQ 97 (116)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~-~~ 97 (116)
....+++.+|+.||++++|+|+..+|..+++.+| .+++..++..+++.+|.+++|.|++++|+.++.......... ..
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 3567899999999999999999999999999999 999999999999999999999999999999999765433221 12
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 033580 98 LWLREALNEELNNAGSGI 115 (116)
Q Consensus 98 ~~~~~~~~~~~~~~~~g~ 115 (116)
..-...+++..+.+++|.
T Consensus 84 ~~el~eaF~~fD~d~~G~ 101 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGF 101 (151)
T ss_pred HHHHHHHHHHHccCCCCc
Confidence 234566788889999883
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.52 E-value=7.9e-14 Score=77.84 Aligned_cols=62 Identities=31% Similarity=0.485 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHH----HHHHHhcCCCCCCcccHHHHHHHH
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKL----ASMVKEGDLDGDGALNQMEFCVLM 85 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~----~~l~~~~d~~~~g~I~~~eF~~~~ 85 (116)
+++.+|+.+|.+++|+|+.+||+.++..++ ...++..+ ..+++.+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG-RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT-SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998 76655554 455999999999999999999875
No 7
>PTZ00183 centrin; Provisional
Probab=99.52 E-value=2.4e-13 Score=87.32 Aligned_cols=85 Identities=36% Similarity=0.639 Sum_probs=67.5
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
|+|.+|+.++............++.+|+.+|.+++|+|+.++|..++..+| ..++..++..++..++.+++|.|+|++|
T Consensus 70 i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef 148 (158)
T PTZ00183 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEF 148 (158)
T ss_pred EeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 678888887766544445567788888888888888888888888888888 7788888888888888888888888888
Q ss_pred HHHHHh
Q 033580 82 CVLMFR 87 (116)
Q Consensus 82 ~~~~~~ 87 (116)
..++..
T Consensus 149 ~~~~~~ 154 (158)
T PTZ00183 149 YRIMKK 154 (158)
T ss_pred HHHHhc
Confidence 887764
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.51 E-value=3.2e-13 Score=85.74 Aligned_cols=84 Identities=32% Similarity=0.599 Sum_probs=59.8
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
|+|++|+.++............+..+|+.+|.+++|+|+..+++.++..+| ..++.+++..++..+|.+++|.|+|++|
T Consensus 64 i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef 142 (149)
T PTZ00184 64 IDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEF 142 (149)
T ss_pred CcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcHHHH
Confidence 677777777665443344455677777777777777777777777777777 6677777777777777777777777777
Q ss_pred HHHHH
Q 033580 82 CVLMF 86 (116)
Q Consensus 82 ~~~~~ 86 (116)
+.++.
T Consensus 143 ~~~~~ 147 (149)
T PTZ00184 143 VKMMM 147 (149)
T ss_pred HHHHh
Confidence 77664
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.49 E-value=3.8e-13 Score=89.28 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=73.9
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCC--HHH----HHHHHHhcCCCCCC
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL-GLQDLT--DDK----LASMVKEGDLDGDG 74 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-~~~~~~--~~~----~~~l~~~~d~~~~g 74 (116)
|+|.+|+..++.........++++-+|+.||.+++|+|+.+++.+++..+ + ...+ ++. ++.++..+|.++||
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~-~~~~~~~e~~~~i~d~t~~e~D~d~DG 162 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG-ENDDMSDEQLEDIVDKTFEEADTDGDG 162 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc-cCCcchHHHHHHHHHHHHHHhCCCCCC
Confidence 79999999999988767677799999999999999999999999999984 3 3344 443 45677899999999
Q ss_pred cccHHHHHHHHHhh
Q 033580 75 ALNQMEFCVLMFRL 88 (116)
Q Consensus 75 ~I~~~eF~~~~~~~ 88 (116)
.|+|+||++++.+.
T Consensus 163 ~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 163 KISFEEFCKVVEKQ 176 (187)
T ss_pred cCcHHHHHHHHHcC
Confidence 99999999999864
No 10
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.48 E-value=3.8e-13 Score=79.43 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhc-cCCCC-cccHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 20 LINELCNGFQLLM-DKVKG-VITTESLKLNAAV-----LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 20 ~~~~~~~~F~~~D-~~~~G-~i~~~el~~~l~~-----~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
....++.+|+.|| ++++| +|+.++|+.+|+. +| ...++++++++++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3567999999998 79999 5999999999999 88 8889999999999999999999999999999874
No 11
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.47 E-value=3e-13 Score=89.51 Aligned_cols=95 Identities=27% Similarity=0.284 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLW 99 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~ 99 (116)
+...+..+|..||.+.||+|+..||+.+|.++| .+.+.--+.++++..|.|.+|+|+|-+|+-++.....+.+......
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~ 175 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGL 175 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHH
Confidence 456789999999999999999999999999999 8888888999999999999999999999999999988999989999
Q ss_pred HHHHHHHHHhhcCCCC
Q 033580 100 LREALNEELNNAGSGI 115 (116)
Q Consensus 100 ~~~~~~~~~~~~~~g~ 115 (116)
+..|..+++|++..||
T Consensus 176 ~~LAr~~eVDVskeGV 191 (244)
T KOG0041|consen 176 LRLARLSEVDVSKEGV 191 (244)
T ss_pred HHHHHhcccchhhhhh
Confidence 9999999999999998
No 12
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.47 E-value=9.7e-13 Score=83.72 Aligned_cols=86 Identities=22% Similarity=0.425 Sum_probs=82.7
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQME 80 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~e 80 (116)
.|+|.-||.++...+...++++.+..+|+.||.++.|.|..+.|+++|...| .+.++++++.+++.+..+..|.|+|..
T Consensus 80 PINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~dy~~ 158 (171)
T KOG0031|consen 80 PINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFDYKA 158 (171)
T ss_pred CeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCceeHHH
Confidence 3899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHh
Q 033580 81 FCVLMFR 87 (116)
Q Consensus 81 F~~~~~~ 87 (116)
|+.++..
T Consensus 159 ~~~~ith 165 (171)
T KOG0031|consen 159 FTYIITH 165 (171)
T ss_pred HHHHHHc
Confidence 9999985
No 13
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.41 E-value=3.2e-12 Score=82.66 Aligned_cols=93 Identities=26% Similarity=0.312 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhh-HHH
Q 033580 17 GEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQL-MEE 95 (116)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~-~~~ 95 (116)
+.++.++++++|..+|++++|.|+..+|..+++.+| .++++.++..++..++. +.+.|+|.+|+.+|....... .++
T Consensus 15 t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred CHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 455678999999999999999999999999999999 99999999999999998 889999999999999876432 222
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 033580 96 SQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~g~ 115 (116)
. +.. ++...+++++|.
T Consensus 93 e---l~~-aF~~fD~d~dG~ 108 (160)
T COG5126 93 E---LRE-AFKLFDKDHDGY 108 (160)
T ss_pred H---HHH-HHHHhCCCCCce
Confidence 2 222 356678888773
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=4.1e-12 Score=75.79 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhhcc-CC-CCcccHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 20 LINELCNGFQLLMD-KV-KGVITTESLKLNAAV-----LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 20 ~~~~~~~~F~~~D~-~~-~G~i~~~el~~~l~~-----~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
....++.+|..||. ++ +|+|+.+||+.+++. +| ..++.+++..+++.+|.+++|.|+|++|+.++..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35679999999997 87 799999999999986 56 6788999999999999999999999999999875
No 15
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.37 E-value=5.7e-12 Score=74.88 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhhc-cCCCC-cccHHHHHHHHHH-cCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 20 LINELCNGFQLLM-DKVKG-VITTESLKLNAAV-LGL---QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 20 ~~~~~~~~F~~~D-~~~~G-~i~~~el~~~l~~-~~~---~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..+.++++|..|| ++++| .|+..+|+.+|+. +|. ..++.++++.+++.+|.+++|.|+|++|+.++..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3567999999997 99999 5999999999986 540 3468899999999999999999999999999885
No 16
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.36 E-value=6.9e-12 Score=78.62 Aligned_cols=84 Identities=21% Similarity=0.484 Sum_probs=74.4
Q ss_pred CcChHHHHHHHHhhcC--CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 033580 1 MVDFEDLLPVMADKLG--GEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQ 78 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~--~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~ 78 (116)
.|+|++|+.++....+ .....+.+.+..++||+.++|.|...+|+.+|..+| ..+++++++.++.... +.+|.|+|
T Consensus 65 rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~e-D~nG~i~Y 142 (152)
T KOG0030|consen 65 RLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQE-DSNGCINY 142 (152)
T ss_pred hhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHcccc-ccCCcCcH
Confidence 3799999999887654 455578999999999999999999999999999999 9999999999998765 57899999
Q ss_pred HHHHHHHH
Q 033580 79 MEFCVLMF 86 (116)
Q Consensus 79 ~eF~~~~~ 86 (116)
++|++.+.
T Consensus 143 E~fVk~i~ 150 (152)
T KOG0030|consen 143 EAFVKHIM 150 (152)
T ss_pred HHHHHHHh
Confidence 99998764
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.36 E-value=7.2e-12 Score=74.68 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhc-cCCCC-cccHHHHHHHHHH-c----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLM-DKVKG-VITTESLKLNAAV-L----GLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D-~~~~G-~i~~~el~~~l~~-~----~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
....+.++|+.|| ++++| +|+..||+.+++. . + ...++.+++++++.+|.+++|.|+|+||+.++...
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3457889999999 78998 5999999999976 2 3 34577899999999999999999999999999854
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.36 E-value=7.8e-12 Score=73.81 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhcc-CC-CCcccHHHHHHHHHH---cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLMD-KV-KGVITTESLKLNAAV---LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D~-~~-~G~i~~~el~~~l~~---~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
....+..+|..||. ++ +|+|+.+||+.+++. +| .++++++++++++.+|.+++|+|+|++|+.++...
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 34567899999997 66 899999999999974 68 88999999999999999999999999999998853
No 19
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.36 E-value=1e-11 Score=83.07 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=72.9
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
|+|.||..++.. ...++.+|+.||+|++|.|+..||+.+|..+| ..++++-.+.+++.+|..+.|.|.|++|
T Consensus 111 i~f~EF~~Lw~~-------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~FD~F 182 (221)
T KOG0037|consen 111 IGFKEFKALWKY-------INQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRIDFDDF 182 (221)
T ss_pred cCHHHHHHHHHH-------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCceeHHHH
Confidence 789999999875 45799999999999999999999999999999 9999999999999999877899999999
Q ss_pred HHHHHh
Q 033580 82 CVLMFR 87 (116)
Q Consensus 82 ~~~~~~ 87 (116)
++++..
T Consensus 183 I~ccv~ 188 (221)
T KOG0037|consen 183 IQCCVV 188 (221)
T ss_pred HHHHHH
Confidence 999874
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.33 E-value=8.8e-12 Score=74.62 Aligned_cols=68 Identities=25% Similarity=0.269 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 19 GLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
+....++.+|..+|.+++|.|+.++++.+++..+ ++.+++..++..++.+++|.|+|++|+.++....
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999877 6788999999999999999999999999988643
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.31 E-value=1.2e-11 Score=68.77 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=55.7
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 25 CNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 25 ~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+.+|..+|.+++|.|+.++++.+++..| . +.+++..+++.++.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g-~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG-L--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC-C--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999999988 4 8889999999999999999999999998874
No 22
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.31 E-value=1.3e-11 Score=72.59 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhcc--CCCCcccHHHHHHHHHH-cCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLMD--KVKGVITTESLKLNAAV-LGLQDL----TDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D~--~~~G~i~~~el~~~l~~-~~~~~~----~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
..+.++.+|..||+ +++|+|+.++|+.+++. +| .++ +..++..++..++.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 45679999999999 89999999999999986 55 444 48899999999999999999999999998865
No 23
>PTZ00183 centrin; Provisional
Probab=99.29 E-value=3.5e-11 Score=77.20 Aligned_cols=93 Identities=20% Similarity=0.267 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHH
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQ 97 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~ 97 (116)
.....+++.+|..+|.+++|.|+..+|..++..+| ..++...+..++..+|.+++|.|+|.+|..++....+.....
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~-- 89 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR-- 89 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH--
Confidence 34456778888888888888888888888888887 777777888888888888888888888887766532211111
Q ss_pred HHHHHHHHHHHhhcCCC
Q 033580 98 LWLREALNEELNNAGSG 114 (116)
Q Consensus 98 ~~~~~~~~~~~~~~~~g 114 (116)
-....++..++.+++|
T Consensus 90 -~~l~~~F~~~D~~~~G 105 (158)
T PTZ00183 90 -EEILKAFRLFDDDKTG 105 (158)
T ss_pred -HHHHHHHHHhCCCCCC
Confidence 1123445666777766
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.28 E-value=1.9e-11 Score=65.58 Aligned_cols=52 Identities=33% Similarity=0.516 Sum_probs=49.1
Q ss_pred CCCcccHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 35 VKGVITTESLKLNAAVLGLQD-LTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~-~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
++|.|+.++|+.++..+| .. ++++++..++..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998889 88 99999999999999999999999999999874
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.27 E-value=9e-11 Score=78.20 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=95.3
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
++-++|..+++......++..-...+|+.||.+++|.|+..||-.++..+. ....++.+...|+.+|.+++|.|+++|+
T Consensus 44 ~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Em 122 (193)
T KOG0044|consen 44 LTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEM 122 (193)
T ss_pred cCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHH
Confidence 566788888888876677778889999999999999999999999998877 6677888888999999999999999999
Q ss_pred HHHHHhhChh-------hHHHHHHHHHHHHHHHHhhcCCCC
Q 033580 82 CVLMFRLSPQ-------LMEESQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 82 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~ 115 (116)
+.++...... ..+..........+++++.+++|.
T Consensus 123 l~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~ 163 (193)
T KOG0044|consen 123 LKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGK 163 (193)
T ss_pred HHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCc
Confidence 9998874322 234556678888999999999885
No 26
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.26 E-value=5.8e-11 Score=75.70 Aligned_cols=90 Identities=24% Similarity=0.296 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHH
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQ 97 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~ 97 (116)
..+..+++++|..+|.|+||.|+.++|+.++.++| ..+++++++.+++... |.|+|.-|+.++.....+.-.
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlG-k~~~d~elDaM~~Ea~----gPINft~FLTmfGekL~gtdp--- 99 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLG-KIASDEELDAMMKEAP----GPINFTVFLTMFGEKLNGTDP--- 99 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhCC----CCeeHHHHHHHHHHHhcCCCH---
Confidence 45678999999999999999999999999999999 8899999999998765 789999999999986655322
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 033580 98 LWLREALNEELNNAGSGI 115 (116)
Q Consensus 98 ~~~~~~~~~~~~~~~~g~ 115 (116)
...+..++...+..++|.
T Consensus 100 e~~I~~AF~~FD~~~~G~ 117 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGK 117 (171)
T ss_pred HHHHHHHHHhcCccCCCc
Confidence 235667778888888885
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.23 E-value=1.6e-10 Score=73.18 Aligned_cols=67 Identities=37% Similarity=0.523 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..+.++..|..+|.+++|.|+.++|..++..++ ..++.+.+..+++.++.+++|.|+|++|+.++..
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 344566677777777777777777777766666 5566666667777777666777777777766654
No 28
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.22 E-value=9.4e-11 Score=78.11 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=71.0
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc----CCC-------CCCHHHHHHHHHhcC
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL----GLQ-------DLTDDKLASMVKEGD 69 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~----~~~-------~~~~~~~~~l~~~~d 69 (116)
.|+|.||+..++..++ ....+.+.-+|++||.+++|+|+.+|+-.++..+ + . ..+.+-++.+|+.+|
T Consensus 80 ~i~F~Efi~als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~-~~~~~~~~~~~~~~v~~if~k~D 157 (193)
T KOG0044|consen 80 TIDFLEFICALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG-SKALPEDEETPEERVDKIFSKMD 157 (193)
T ss_pred CcCHHHHHHHHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc-cccCCcccccHHHHHHHHHHHcC
Confidence 4899999999998876 4566788888999999999999999998877763 3 1 113456788999999
Q ss_pred CCCCCcccHHHHHHHHHh
Q 033580 70 LDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 70 ~~~~g~I~~~eF~~~~~~ 87 (116)
.|+||.|++++|......
T Consensus 158 ~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 158 KNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CCCCCcccHHHHHHHhhh
Confidence 999999999999998774
No 29
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=1.8e-10 Score=68.13 Aligned_cols=68 Identities=24% Similarity=0.198 Sum_probs=58.4
Q ss_pred hHHHHHHHHHh-hccCCCC-cccHHHHHHHHHHc-----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQL-LMDKVKG-VITTESLKLNAAVL-----GLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~-~D~~~~G-~i~~~el~~~l~~~-----~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
....+..+|+. +|++++| +|+.+||+.++..- + ...++.+++++++.+|.++||.|+|+||+.++...
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45678999999 6787876 99999999999884 3 34667899999999999999999999999998854
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.20 E-value=1.3e-10 Score=62.73 Aligned_cols=61 Identities=34% Similarity=0.601 Sum_probs=57.3
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLM 85 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~ 85 (116)
+..+|..+|.+++|.|+.+++..++..++ .+.+.+.+..+++.++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 67889999999999999999999999999 88999999999999999999999999998765
No 31
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.14 E-value=4.2e-10 Score=70.69 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=66.5
Q ss_pred CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHHHhhCh
Q 033580 16 GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLD--GDGALNQMEFCVLMFRLSP 90 (116)
Q Consensus 16 ~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~--~~g~I~~~eF~~~~~~~~~ 90 (116)
..+++..+++.+|..||..+||+|+..+...+|+.+| .++++.++.+.+..++.+ +-.+|+|++|+.++....+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 3567789999999999999999999999999999999 999999999999998876 4578999999999987543
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=99.12 E-value=3.8e-10 Score=62.59 Aligned_cols=61 Identities=18% Similarity=0.292 Sum_probs=57.0
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHh
Q 033580 26 NGFQLLMDKVKGVITTESLKLNAAVLGLQ-DLTDDKLASMVKEGDLDGD-GALNQMEFCVLMFR 87 (116)
Q Consensus 26 ~~F~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~l~~~~d~~~~-g~I~~~eF~~~~~~ 87 (116)
.+|..||.++.|.|...++..+|+.++ . .+++++++.+.+.+|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~-~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVT-GRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHc-CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999998 6 8899999999999999987 99999999999975
No 33
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.08 E-value=1.4e-09 Score=78.91 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=82.0
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
+||.||..++.. .+.++.++|+..|.+.||.|+.+|+.+.|+.+| .++++++++.+++.+|+++++.|+++||
T Consensus 68 vDy~eF~~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 68 VDYSEFKRYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred ccHHHHHHHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHH
Confidence 789999998865 466899999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhChhhHHHHHHHHHH
Q 033580 82 CVLMFRLSPQLMEESQLWLRE 102 (116)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (116)
...+.......++..--.+++
T Consensus 141 rd~~ll~p~s~i~di~~~W~h 161 (463)
T KOG0036|consen 141 RDHLLLYPESDLEDIYDFWRH 161 (463)
T ss_pred HhhhhcCChhHHHHHHHhhhh
Confidence 999987775555554333333
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.07 E-value=9.5e-10 Score=67.99 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMF 86 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~ 86 (116)
....+..+|..+|.|++|+|+.+||..+. ++ .....+..++..+|.++||.||++||+..+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34568899999999999999999999876 33 4567788999999999999999999999993
No 35
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.07 E-value=8.7e-10 Score=69.99 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=73.0
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHH----HHHHhcCCCCCCccc
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLA----SMVKEGDLDGDGALN 77 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~----~l~~~~d~~~~g~I~ 77 (116)
++|++|+.+++...-..+..-+..-+|+++|-|++++|...+|...++.+....++++++. +++...|.++||+++
T Consensus 88 lsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~ 167 (189)
T KOG0038|consen 88 LSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLS 167 (189)
T ss_pred ccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCccc
Confidence 6899999999877644555567788999999999999999999999999762468888865 567789999999999
Q ss_pred HHHHHHHHHh
Q 033580 78 QMEFCVLMFR 87 (116)
Q Consensus 78 ~~eF~~~~~~ 87 (116)
+.+|-+++.+
T Consensus 168 ~~eFe~~i~r 177 (189)
T KOG0038|consen 168 FAEFEHVILR 177 (189)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 36
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.04 E-value=1.2e-09 Score=64.46 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhccC--CCCcccHHHHHHHHH-HcCCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLMDK--VKGVITTESLKLNAA-VLGLQDLT----DDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~--~~G~i~~~el~~~l~-~~~~~~~~----~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
....+...|..|+.. .+|+|+.+||+.++. .++ ..++ +++++.+++.+|.+++|.|+|++|+.++...
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 345788899999865 489999999999997 466 5566 8999999999999999999999999998853
No 37
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=5e-09 Score=67.30 Aligned_cols=67 Identities=22% Similarity=0.386 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
..+++.+|..||.+.+|+|+..||+.+++.+| ..+..+++..++..+|.++.|.|+|++|...+...
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 46788999999999999999999999999999 88888999999999999889999999999887753
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=98.91 E-value=1.3e-08 Score=78.46 Aligned_cols=89 Identities=19% Similarity=0.245 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-CCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhhChhhH
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ-DLTDDK---LASMVKEGDLDGDGALNQMEFCVLMFRLSPQLM 93 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~---~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 93 (116)
..+.++++++|..+|++++|++ +..+++.+| . .+++++ +..+++.+|.+++|.|+++||+.++........
T Consensus 139 ~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG-~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~s 213 (644)
T PLN02964 139 TQEPESACESFDLLDPSSSNKV----VGSIFVSCS-IEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVA 213 (644)
T ss_pred HHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCC
Confidence 3455788899999999999986 888888888 5 566665 788899999999999999999998886442221
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 033580 94 EESQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~g~ 115 (116)
++ -...++..++.+++|.
T Consensus 214 eE----EL~eaFk~fDkDgdG~ 231 (644)
T PLN02964 214 AN----KKEELFKAADLNGDGV 231 (644)
T ss_pred HH----HHHHHHHHhCCCCCCc
Confidence 21 2344566778887774
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.84 E-value=3.9e-08 Score=58.09 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHH-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAV-----LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-----~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
....+..+|..|. .+.+.++..||+.++.. +. ..-++..++++++.+|.|+||.|+|.||+.++...
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3456888999998 45679999999999976 23 34567889999999999999999999999999853
No 40
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.72 E-value=1.4e-07 Score=68.78 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=65.0
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhh
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQD-LTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQL 92 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~-~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 92 (116)
++...+++.+|+.||.+++|.++..++...+..+. .+ ........++..+|.+.||+++|++|.+++......+
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~-~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l 84 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD-HPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELEL 84 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC-CCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHH
Confidence 44556889999999999999999999999999988 76 6777888899999999999999999999998755443
No 41
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.68 E-value=2.1e-07 Score=56.50 Aligned_cols=66 Identities=27% Similarity=0.280 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
......+..+|..+|+ .+|+|+.++.+.++...+ ++.+.+..+|...|.+++|.++++||+-+|.-
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4566789999999985 589999999999999888 88899999999999999999999999998774
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.64 E-value=5.4e-08 Score=45.66 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=19.2
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHH
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLNAAV 50 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~l~~ 50 (116)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777776654
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=98.58 E-value=5.5e-07 Score=69.59 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=60.3
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+..+|+.+|.+++|.|+.+||..++..++ ...+++++..+|+.+|.+++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 79999999999999999999999999988 7788999999999999999999999999999987
No 44
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.56 E-value=2.2e-06 Score=57.15 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=82.7
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCc-ccHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGV-ITTESLKLNAAVLGLQD-LTDDKLASMVKEGDLDGDGALNQ 78 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~-i~~~el~~~l~~~~~~~-~~~~~~~~l~~~~d~~~~g~I~~ 78 (116)
+|+.++|+.+...... --..+++..|+.+++|. |+..++-.++.... .+ .....+.-.|+-+|.+++|.|+.
T Consensus 50 ~lt~eef~~i~~~~~N-----p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~-~~~~~~~Kl~faF~vYD~~~~G~I~r 123 (187)
T KOG0034|consen 50 YLTKEEFLSIPELALN-----PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFS-PKASKREKLRFAFRVYDLDGDGFISR 123 (187)
T ss_pred ccCHHHHHHHHHHhcC-----cHHHHHHHHHhccCCCCccCHHHHHHHHhhhc-CCccHHHHHHHHHHHhcCCCCCcCcH
Confidence 4788888888754432 13567888888888888 99999999998876 44 34458888999999999999999
Q ss_pred HHHHHHHHhhChh-hH--HHHHHHHHHHHHHHHhhcCCCC
Q 033580 79 MEFCVLMFRLSPQ-LM--EESQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 79 ~eF~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~g~ 115 (116)
+++..++...... .. +.-+.-+...+..+-|.+++|.
T Consensus 124 eel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 124 EELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred HHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999986653 32 3555556666666777788774
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.56 E-value=1.3e-07 Score=44.93 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=25.9
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHH-HcC
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAA-VLG 52 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~-~~~ 52 (116)
+++.+|+.+|.+++|+|+.+||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999998 565
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.48 E-value=2.2e-07 Score=43.56 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 60 KLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 60 ~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
++.++|+.+|.|++|.|+++||+.++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999875
No 47
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.44 E-value=1.1e-06 Score=46.24 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+++..|++.+|+.++ +.+++..+..+|+.+|.+++|+++.+||..++..
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 468899999999999 9999999999999999999999999999998874
No 48
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.41 E-value=1.4e-06 Score=71.66 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCC-------CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCh
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDL-------TDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSP 90 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~-------~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~ 90 (116)
+....++..+|..||++++|.++..+|+.+|+.+| ..+ +++++++++..+|++.+|+|+..+|+.+|.+...
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcC-CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 44556889999999999999999999999999998 765 3458899999999999999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 033580 91 QLMEESQLWLREALNEELNN 110 (116)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~ 110 (116)
...-..- -++.++..|+.
T Consensus 2328 eNI~s~~--eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2328 ENILSSE--EIEDAFRALDA 2345 (2399)
T ss_pred ccccchH--HHHHHHHHhhc
Confidence 5444332 45555666655
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.33 E-value=1.7e-06 Score=46.05 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=40.9
Q ss_pred CcChHHHHHHHHhhcCCC-ChHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 033580 1 MVDFEDLLPVMADKLGGE-GLINELCNGFQLLMDKVKGVITTESLKLNAAV 50 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 50 (116)
.|+.++|..++. .++.. -...++..+|..+|.+++|+|+.+||..++..
T Consensus 4 ~i~~~~~~~~l~-~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 4 KITREEFRRALS-KLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEEHHHHHHHHH-HTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred EECHHHHHHHHH-HhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 378999999994 44434 56777999999999999999999999988764
No 50
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.31 E-value=1.1e-05 Score=54.46 Aligned_cols=67 Identities=19% Similarity=0.152 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
...+..+|...|+++.|+|+.+||+.+|....+.+.+.+.+..|+..+|.+.+|+|.+.||..++..
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence 3467888999999999999999999998866546778888888888888888888888888888763
No 51
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.30 E-value=3.8e-06 Score=62.12 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=59.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAVLGL---QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~---~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
..+..+|+..|.|+.|.|+.+||+++...++. ..++++++-++-..+|.|+||.|++.||+.++.-..
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 35788999999999999999999998887531 467899999999999999999999999999887543
No 52
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.24 E-value=7.8e-06 Score=60.17 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=50.8
Q ss_pred CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 16 GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 16 ~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
+.......+..+|+.+|.+++|+|+.+||. + ++.+|..+|.++||.|+++||...+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~------~--------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL------G--------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH------H--------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 445566789999999999999999999983 1 4678999999999999999999988753
No 53
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=8.8e-06 Score=57.77 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHH----------------------------------
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLAS---------------------------------- 63 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~---------------------------------- 63 (116)
.++.+++..++..+|.+++|.|+..+++.++.... ......++.+
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~-k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d 151 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQ-KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPD 151 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcccccc
Confidence 44566777777777777777777777776665432 2111222222
Q ss_pred ----------------HHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhcCCCC
Q 033580 64 ----------------MVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 64 ----------------l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 115 (116)
-|+..|.+++|.++.+||..++. |+.-....-|+..-+.+.++++++|.
T Consensus 152 ~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH---PEe~p~M~~iVi~Etl~d~Dkn~DG~ 216 (325)
T KOG4223|consen 152 EEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH---PEEHPHMKDIVIAETLEDIDKNGDGK 216 (325)
T ss_pred chhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC---hhhcchHHHHHHHHHHhhcccCCCCc
Confidence 34445666666666666666554 33345556677777777777777773
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.14 E-value=3.8e-06 Score=37.96 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=18.5
Q ss_pred HHHHHHhhccCCCCcccHHHHHHH
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLN 47 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~ 47 (116)
++.+|+.+|.|++|.|+.+|+.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356788888888888888888764
No 55
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=1.1e-05 Score=57.20 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=63.4
Q ss_pred CcChHHHHHHHHhhcC-CCChH---HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033580 1 MVDFEDLLPVMADKLG-GEGLI---NELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGAL 76 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~-~~~~~---~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I 76 (116)
+|++.||+.=|-.... ++.+. .+-...|...|+|++|+++.+|++.++.-.+ ......++.-++-..|.++||++
T Consensus 216 ~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~-~d~A~~EA~hL~~eaD~dkD~kL 294 (325)
T KOG4223|consen 216 KISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSE-QDHAKAEARHLLHEADEDKDGKL 294 (325)
T ss_pred ceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCC-ccHHHHHHHHHhhhhccCccccc
Confidence 4889999985544332 22232 2445667778999999999999999986655 55667888889999999999999
Q ss_pred cHHHHHHH
Q 033580 77 NQMEFCVL 84 (116)
Q Consensus 77 ~~~eF~~~ 84 (116)
|++|-+.-
T Consensus 295 s~eEIl~~ 302 (325)
T KOG4223|consen 295 SKEEILEH 302 (325)
T ss_pred cHHHHhhC
Confidence 99987654
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.02 E-value=3e-05 Score=42.74 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=45.2
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhcCCCC
Q 033580 61 LASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 61 ~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 115 (116)
+.++|+.+|.+++|.|+.+||..++.............-....+....+.+++|.
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~ 56 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGR 56 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSS
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCC
Confidence 5789999999999999999999999998755444444457777788999999884
No 57
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.00 E-value=2.7e-05 Score=58.43 Aligned_cols=99 Identities=15% Similarity=0.094 Sum_probs=69.6
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-----CCCHHHHHHHHHhcCCCCCCcc
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ-----DLTDDKLASMVKEGDLDGDGAL 76 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~-----~~~~~~~~~l~~~~d~~~~g~I 76 (116)
|+|+||+.+-... +.+......+|+.||+.++|.+|.+++..++++..+. +.+.+-+.. .+.......+
T Consensus 91 isf~eF~afe~~l---C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~~~~r~~ 164 (694)
T KOG0751|consen 91 ISFQEFRAFESVL---CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGDIRKRHL 164 (694)
T ss_pred ccHHHHHHHHhhc---cCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHH---HhhhHHHHhc
Confidence 8999999876654 5577889999999999999999999999999986511 112222332 3333445669
Q ss_pred cHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhcCCC
Q 033580 77 NQMEFCVLMFRLSPQLMEESQLWLREALNEELNNAGSG 114 (116)
Q Consensus 77 ~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 114 (116)
+|.+|++++.....+. ..+.+++-+++++|
T Consensus 165 ny~~f~Q~lh~~~~E~--------~~qafr~~d~~~ng 194 (694)
T KOG0751|consen 165 NYAEFTQFLHEFQLEH--------AEQAFREKDKAKNG 194 (694)
T ss_pred cHHHHHHHHHHHHHHH--------HHHHHHHhcccCCC
Confidence 9999999998644333 23445555666655
No 58
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.94 E-value=3.7e-06 Score=51.80 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCV 83 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~ 83 (116)
....+.-.|..+|.|++|.|+..|++.+...+. ..+.-+..+++.+|.++||.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345667779999999999999999987765333 3445678899999999999999999875
No 59
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.94 E-value=8.7e-06 Score=59.94 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=61.5
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc------CCC----CCC-----HHHHH--HH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL------GLQ----DLT-----DDKLA--SM 64 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~------~~~----~~~-----~~~~~--~l 64 (116)
|+|.||+=++..... +...++-+|+.||.|++|-|+.+||..+.+.. | . ..+ ..++. -.
T Consensus 216 IsfSdYiFLlTlLS~---p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g-~~hrd~~tt~~s~~~~~nsaL~ 291 (489)
T KOG2643|consen 216 ISFSDYIFLLTLLSI---PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVG-VRHRDHFTTGNSFKVEVNSALL 291 (489)
T ss_pred eeHHHHHHHHHHHcc---CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccc-eecccCccccceehhhhhhhHH
Confidence 789999888777654 45579999999999999999999998877542 1 1 000 01111 12
Q ss_pred HHhcCCCCCCcccHHHHHHHHHhhChhhH
Q 033580 65 VKEGDLDGDGALNQMEFCVLMFRLSPQLM 93 (116)
Q Consensus 65 ~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 93 (116)
..-+..++++++++++|..++..+-.+.+
T Consensus 292 ~yFFG~rg~~kLs~deF~~F~e~Lq~Eil 320 (489)
T KOG2643|consen 292 TYFFGKRGNGKLSIDEFLKFQENLQEEIL 320 (489)
T ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHH
Confidence 23467778889999999988876544433
No 60
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.89 E-value=6.2e-05 Score=56.72 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=61.0
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC---CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChh
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQD---LTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~---~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~ 91 (116)
......++..|...| +++|+|+..++..++...+ .. ...+++++++...+.+.+|+|+|++|+.++....+.
T Consensus 15 q~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~-~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAK-LPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhc-ccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 334567889999999 9999999999999999976 43 357889999999999999999999999987765443
No 61
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.85 E-value=3.6e-05 Score=56.79 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=28.2
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAA 49 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~ 49 (116)
+++++|+.++... +.+-++.-|..+|+..+|.|+..+|..++-
T Consensus 303 Ls~deF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL 345 (489)
T KOG2643|consen 303 LSIDEFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLL 345 (489)
T ss_pred ccHHHHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHH
Confidence 5667777777654 334555667777777777777777765554
No 62
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.70 E-value=5.5e-05 Score=34.06 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHH
Q 033580 62 ASMVKEGDLDGDGALNQMEFCVLM 85 (116)
Q Consensus 62 ~~l~~~~d~~~~g~I~~~eF~~~~ 85 (116)
+.+|+.+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568899999999999999998764
No 63
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.60 E-value=0.00015 Score=51.88 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=71.0
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAV-LGLQDLTDDKLASMVKEGDLDGDGALNQM 79 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~l~~~~d~~~~g~I~~~ 79 (116)
.+||.|.+..++...+......-++-+|++|+.+.||.++..+|..+|+. +| +.+-.+.-+|+..+...+++|++.
T Consensus 275 ~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg---v~~l~v~~lf~~i~q~d~~ki~~~ 351 (412)
T KOG4666|consen 275 NGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG---VEVLRVPVLFPSIEQKDDPKIYAS 351 (412)
T ss_pred cccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC---cceeeccccchhhhcccCcceeHH
Confidence 37899999888888777777888999999999999999999999888887 45 444455668888888889999999
Q ss_pred HHHHHHHh
Q 033580 80 EFCVLMFR 87 (116)
Q Consensus 80 eF~~~~~~ 87 (116)
+|..++..
T Consensus 352 ~f~~fa~~ 359 (412)
T KOG4666|consen 352 NFRKFAAT 359 (412)
T ss_pred HHHHHHHh
Confidence 99998774
No 64
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.58 E-value=0.00021 Score=42.11 Aligned_cols=52 Identities=10% Similarity=-0.030 Sum_probs=42.0
Q ss_pred CcChHHHHHHHHhhcCCCChH-HHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 1 MVDFEDLLPVMADKLGGEGLI-NELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~-~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
+|+..||..++...++..-.. ..+..+++.+|.|++|.|+.+||..++..+.
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 478899999998744322223 7899999999999999999999988887654
No 65
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.56 E-value=0.00038 Score=40.91 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=43.3
Q ss_pred CcChHHHHHHHHhh--cCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 1 MVDFEDLLPVMADK--LGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 1 ~i~f~eFl~~~~~~--~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
+|+..||..++.+. ++.....+++..+++.+|.+++|.|+.++|-.++..+.
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 47889999999742 45556778999999999999999999999988877654
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.55 E-value=0.00026 Score=41.52 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=41.8
Q ss_pred CcChHHHHHHHHhhcCCCCh----HHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 1 MVDFEDLLPVMADKLGGEGL----INELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~----~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
+|+..||..++......... ...+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 26 ~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 26 TLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred cCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 47889999988755432222 68899999999999999999999998887643
No 67
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.49 E-value=0.00017 Score=33.93 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033580 60 KLASMVKEGDLDGDGALNQMEFCVLMF 86 (116)
Q Consensus 60 ~~~~l~~~~d~~~~g~I~~~eF~~~~~ 86 (116)
++..+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 357899999999999999999999987
No 68
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.44 E-value=0.0006 Score=40.42 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=42.0
Q ss_pred cChHHHHHHHHhhc----CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 2 VDFEDLLPVMADKL----GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 2 i~f~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
|+..|+..++.... ........+..+++.+|.+++|.|+.+||..++..+.
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 88999999987642 2333567899999999999999999999999887654
No 69
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.43 E-value=0.00062 Score=40.10 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=42.1
Q ss_pred CcChHHHHHHHHhhc----CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 1 MVDFEDLLPVMADKL----GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
+|+..||..++.... ........+..+++.+|.|++|.|+.+||..++..+.
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 378899999988763 2233457899999999999999999999998887654
No 70
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.39 E-value=0.00016 Score=50.11 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC--CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQD--LTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~--~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
.+.++.+|...|-+.+|+|+..|+++++..-.-.. -.-++.+..|...|+++||.|+|+||..-+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 46788999999999999999999999887532011 12234455778899999999999999766554
No 71
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.38 E-value=0.00026 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=17.8
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHH
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLNAA 49 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~l~ 49 (116)
++.+|..+|.+++|.|+..+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45667777777777777777766664
No 72
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.36 E-value=0.00088 Score=39.37 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=42.5
Q ss_pred cChHHHHHHHHh----hcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 2 VDFEDLLPVMAD----KLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 2 i~f~eFl~~~~~----~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
|+..|+..+|.. .++.......+..+++.+|++++|.|+.++|..++..+.
T Consensus 27 I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 27 LKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred ECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 888999999987 344455667899999999999999999999988876543
No 73
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.35 E-value=0.0011 Score=34.83 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=39.0
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNA 48 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l 48 (116)
.|++.+|..++.... .....+.+..+|..+|.+++|.|+.+++..++
T Consensus 16 ~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 16 TISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 378999999887653 45567788999999999999999999997765
No 74
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0016 Score=40.13 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHc------CC--CC-CCHHHHHHHH----HhcCCCCCCcccHHHHHHH
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVL------GL--QD-LTDDKLASMV----KEGDLDGDGALNQMEFCVL 84 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~------~~--~~-~~~~~~~~l~----~~~d~~~~g~I~~~eF~~~ 84 (116)
.--..|...|-|++|.++--|+..+++.. |- .+ .++.++++++ +.-|.|+||.|+|.||+..
T Consensus 68 lqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 68 LQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 33478999999999999999999998864 20 12 3566776655 4568889999999999764
No 75
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.24 E-value=0.00051 Score=40.64 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=42.1
Q ss_pred CcChHHHHHHHHhhc----CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 1 MVDFEDLLPVMADKL----GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
+|+..|+..++.... +.....+.+..+++.+|.+++|.|+.++|..++...+
T Consensus 26 ~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 26 TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 478899999886532 2234567899999999999999999999999887765
No 76
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.20 E-value=0.00091 Score=38.60 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhhChhh
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ-DLTDDKLASMVKEGDLD----GDGALNQMEFCVLMFRLSPQL 92 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~l~~~~d~~----~~g~I~~~eF~~~~~~~~~~~ 92 (116)
++..+|..+.. +.+.++.++|+..|+.-... ..+.+.+..++..+.++ ..+.++++.|..++.+....+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~ 74 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSI 74 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCC
Confidence 46789999955 79999999999999886512 46899999999887554 468899999999998765433
No 77
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.09 E-value=0.0023 Score=37.24 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=40.8
Q ss_pred CcChHHHHHHHHhhcCC----CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 1 MVDFEDLLPVMADKLGG----EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~----~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
.|+..+|..++...++. ......+..++..+|.+++|.|+.++|..++....
T Consensus 26 ~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 26 TLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred cCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 47889999988653321 12367899999999999999999999988886543
No 78
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.04 E-value=0.0037 Score=34.03 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=39.3
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
.|+..|+..++... + ...+.+..+|..+|.+++|.|+.+++..++..+
T Consensus 15 ~i~~~el~~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 15 LISGDEARPFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred cCcHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 37888998888664 2 256778999999999999999999998887654
No 79
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.01 E-value=0.0027 Score=37.66 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=39.9
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
.|++.++..++... .-..+++..+|..+|.+++|.|+.++|..++...
T Consensus 26 ~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 26 TVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred eEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 47889999988763 2356789999999999999999999999888763
No 80
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.99 E-value=0.0024 Score=37.53 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=41.2
Q ss_pred cChHHHHHHHHhhc----CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 2 VDFEDLLPVMADKL----GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 2 i~f~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
|+..|+..++...+ ........+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 28 Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred ECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 88899999886532 2233567899999999999999999999998887654
No 81
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.94 E-value=0.0025 Score=46.16 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~ 91 (116)
...+.-+|..+|.|.||.++..||+.+- ..-.+.-++.+|...|...||.|+-.|++..+.+..+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~p 314 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPP 314 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh-----ccCchhHHHHHHhhhcccccCccccchhhhhhccCCCc
Confidence 4678889999999999999999998765 33456678889999999999999999999999876543
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0017 Score=51.41 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..-+++..|..+|+...|++|...-+.+|...+ ++...+..++..-|.|+||+++.+||+-.|.-
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 345678999999999999999999999998877 77888999999999999999999999877653
No 83
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.93 E-value=0.0044 Score=39.85 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHH-HHHHHHHHH
Q 033580 26 NGFQLLMDKVKGVITTESLKLNAAVLGLQD-LTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLME-ESQLWLREA 103 (116)
Q Consensus 26 ~~F~~~D~~~~G~i~~~el~~~l~~~~~~~-~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~-~~~~~~~~~ 103 (116)
++...|..+++|.++.++|..++..+. .. +-+-.+.-.|+-+|-++|+.|--.+....+.++-.+.+. ..-.++...
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~s-E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFS-EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHH-hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 455566689999999999999998865 32 333445566788999999999999999998887666544 334456666
Q ss_pred HHHHHhhcCCC
Q 033580 104 LNEELNNAGSG 114 (116)
Q Consensus 104 ~~~~~~~~~~g 114 (116)
+-+|-+.+|+|
T Consensus 154 vieEAD~DgDg 164 (189)
T KOG0038|consen 154 VIEEADLDGDG 164 (189)
T ss_pred HHHHhcCCCCC
Confidence 77777778777
No 84
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.92 E-value=0.0015 Score=28.84 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 61 LASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 61 ~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+..+++.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998864
No 85
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.91 E-value=0.0038 Score=46.70 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=61.0
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHH-------cCCCCCC-HHHHHHHHHhcCCCCC
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAV-------LGLQDLT-DDKLASMVKEGDLDGD 73 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-------~~~~~~~-~~~~~~l~~~~d~~~~ 73 (116)
|+|.+|+-++-.... .....-++-+|+++|-+++|.++..|++-..+. .+...++ +.-..+++..+.+...
T Consensus 332 mdykdFv~FilA~e~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~ 410 (493)
T KOG2562|consen 332 MDYKDFVDFILAEED-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDE 410 (493)
T ss_pred ccHHHHHHHHHHhcc-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCC
Confidence 789999987665542 444567899999999999999999998765543 2312332 4556778888888888
Q ss_pred CcccHHHHHH
Q 033580 74 GALNQMEFCV 83 (116)
Q Consensus 74 g~I~~~eF~~ 83 (116)
++|+.++|..
T Consensus 411 ~kItLqDlk~ 420 (493)
T KOG2562|consen 411 NKITLQDLKG 420 (493)
T ss_pred CceeHHHHhh
Confidence 9999999876
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.80 E-value=0.012 Score=44.22 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCCCCH-----------------------------------------
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVL-GLQDLTD----------------------------------------- 58 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-~~~~~~~----------------------------------------- 58 (116)
...+...|+.+|..+.|+|+......++..+ | .+++-
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~-L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITG-LNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhc-CCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 4578899999999999999999988777652 2 11110
Q ss_pred -----HHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 59 -----DKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 59 -----~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
..++.+|+.+|.++.|.|+.+||..++.-..
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~ 577 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLS 577 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHH
Confidence 1134466678888888899998888877644
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.74 E-value=0.0094 Score=31.40 Aligned_cols=49 Identities=14% Similarity=-0.024 Sum_probs=35.0
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
++|.|...++...=- .-.......+|+.+|+.++|.+..+|+...++.+
T Consensus 2 msf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 577787776654321 3345677889999999999999999999887654
No 88
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.71 E-value=0.011 Score=35.06 Aligned_cols=51 Identities=18% Similarity=0.054 Sum_probs=40.7
Q ss_pred cChHHHHHHHHhhc----CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcC
Q 033580 2 VDFEDLLPVMADKL----GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLG 52 (116)
Q Consensus 2 i~f~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~ 52 (116)
++..||..++.+.+ +.......+.++++.+|.|+||.|+..||-.++..+.
T Consensus 24 Lsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 24 LNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 56778888886554 3444567899999999999999999999988887654
No 89
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.65 E-value=0.0074 Score=37.31 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=34.5
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNA 48 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l 48 (116)
+|+.+|+..+. + ......+...|..+|.|++|+||.+|+...+
T Consensus 64 ~Ls~~EL~~~~---l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 64 KLSHHELAPIR---L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred cCCHHHHHHHH---c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 36777887665 1 2345667889999999999999999999988
No 90
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.0089 Score=45.38 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 19 GLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
++.+.+-..|+..-.|-.|+|+-.--+..+.+.. ++-+|+..+|...|.+.||.++..|||..+...
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 3445677889999999999999999899888766 566899999999999999999999999998753
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.28 E-value=0.0063 Score=45.56 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHH---HHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHh----cCCCCCCcccHHHHHHHHHhhC
Q 033580 22 NELCNG---FQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKE----GDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 22 ~~~~~~---F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~----~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
+.++.+ |--+|++.+|.|+.++|...-.. .++.--++++|.. .....+|+++|++|+-++....
T Consensus 275 e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 275 EHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred HHHHHHHHHHhhhccccccccCHHHHHHHhcc----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 344444 67779999999999998765543 3467778899983 3334789999999999988754
No 92
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.07 E-value=0.16 Score=32.91 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 27 GFQLLMDKVKGVITTESLKLNAAVLGL--QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 27 ~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
.|..|-..+...++...|..+|+.+++ ..++...++-+|..+...+..+|+|++|+.++...
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 344444666778999999999999762 25788999999999876667789999999999853
No 93
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.84 E-value=0.03 Score=43.25 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHH
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQ 97 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~ 97 (116)
....+.-|..+|.++.|+++.+++..+|...+ ...+++...++....+.+.+|.+...+|.+++.....+..+..+
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~R 667 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGSR 667 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHHH
Confidence 34566789999999999999999999999988 88999999999999998889999999999999987777766655
No 94
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.81 E-value=0.0067 Score=43.73 Aligned_cols=64 Identities=14% Similarity=-0.040 Sum_probs=50.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHH---HHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 22 NELCNGFQLLMDKVKGVITTESL---KLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el---~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
..++-.|..+|+|+++.|...|. +.++..-. -...-...+++.+|.|+|..|+++|+...+...
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 34566799999999999999995 44554433 233456789999999999999999999988753
No 95
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.67 E-value=0.0055 Score=34.38 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC-------CCCcccHHHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLD-------GDGALNQMEFCV 83 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~-------~~g~I~~~eF~~ 83 (116)
..+++..+|+.+ .++.++||..+|++.|. .+.++-+..++..- ..|.++|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~--------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT--------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS---------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC--------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 446899999999 77789999999998762 12235555544332 236799998875
No 96
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.43 E-value=0.14 Score=39.16 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033580 5 EDLLPVMADKLGGEGLINELCNGFQLL-MDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCV 83 (116)
Q Consensus 5 ~eFl~~~~~~~~~~~~~~~~~~~F~~~-D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~ 83 (116)
++|+..............+..++.... |..+||.|+.+||+..=..+. .++......|.-+|..++|.+++++|..
T Consensus 56 edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~~~~~ 132 (694)
T KOG0751|consen 56 EDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFEDVAD 132 (694)
T ss_pred HHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehHHHHH
Confidence 455554444443333333333333332 456677777777654333333 2345555566666766667777777766
Q ss_pred HHHhh
Q 033580 84 LMFRL 88 (116)
Q Consensus 84 ~~~~~ 88 (116)
.+.+.
T Consensus 133 if~~t 137 (694)
T KOG0751|consen 133 IFGQT 137 (694)
T ss_pred HHhcc
Confidence 66653
No 97
>PF14658 EF-hand_9: EF-hand domain
Probab=95.37 E-value=0.11 Score=28.91 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHhhccCCC-CcccHHHHHHHHHH
Q 033580 6 DLLPVMADKLGGEGLINELCNGFQLLMDKVK-GVITTESLKLNAAV 50 (116)
Q Consensus 6 eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~-G~i~~~el~~~l~~ 50 (116)
.+..+++..-.....+.+++.+.+.+|+++. |.|+.++|..+|+.
T Consensus 19 ~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 19 DLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3444554443335567899999999999997 99999999998874
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=94.80 E-value=0.46 Score=37.29 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=59.6
Q ss_pred cChHHHHHHHHhhc-CCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC--CCCHHHHHHHHHhc----C---CC
Q 033580 2 VDFEDLLPVMADKL-GGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ--DLTDDKLASMVKEG----D---LD 71 (116)
Q Consensus 2 i~f~eFl~~~~~~~-~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~--~~~~~~~~~l~~~~----d---~~ 71 (116)
++|.+|.++..... +...+-.++..+|..+-.++ +.++.++|...|.... . ..+.+.+..++..+ . ..
T Consensus 17 l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q-~e~~~~~~~~~~i~~~~~~~~~~~~~~ 94 (599)
T PLN02952 17 YNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQ-DELDCTLAEAQRIVEEVINRRHHVTRY 94 (599)
T ss_pred cCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC-CCcCCCHHHHHHHHHHHHhhccccccc
Confidence 68999987766542 23335678999999996544 6899999999999875 3 25666666665432 1 11
Q ss_pred CCCcccHHHHHHHHHh
Q 033580 72 GDGALNQMEFCVLMFR 87 (116)
Q Consensus 72 ~~g~I~~~eF~~~~~~ 87 (116)
+.+.++++.|..++..
T Consensus 95 ~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 95 TRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccCcCHHHHHHHHcC
Confidence 3346999999999974
No 99
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.19 E-value=0.24 Score=39.47 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~ 91 (116)
..-+..+|...|++++|.++..+...++..+. ..+....+..+++..+...++++..++|..+.......
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r 204 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR 204 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC
Confidence 44567889999999999999999999999988 88889999999999987789999999999887765433
No 100
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=0.24 Score=39.84 Aligned_cols=62 Identities=26% Similarity=0.216 Sum_probs=51.8
Q ss_pred HHHHHHHhhc--cCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 23 ELCNGFQLLM--DKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 23 ~~~~~F~~~D--~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+..+-++.|+ +...|+|+.++-+..+-..| ++...+.+++...|.|+||+++..||--.|+-
T Consensus 14 Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~---LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 14 ERQKHDAQFGQLKPGQGFITGDQARNFFLQSG---LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHHHHHhccCCCCCccchHhhhhhHHhcC---CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 3444555554 56799999999999998888 77788999999999999999999999888775
No 101
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.08 E-value=0.11 Score=40.67 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=55.9
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
|+|..|..+......-.....-..++|+.+|.+.+|.++..++-..|..+. ..---+.+.-+++.++..++ ..+.++-
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 567778777776654333444568999999999999999999988887754 33334556667777777776 6666554
No 102
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.08 E-value=0.22 Score=37.12 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhcCCCC
Q 033580 54 QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNNAGSGI 115 (116)
Q Consensus 54 ~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 115 (116)
.......+..+|+.+|.+++|.|+.+||.. ....+..++.+++|.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-----------------~~~~F~~~D~d~DG~ 373 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-----------------SDAVFDALDLNHDGK 373 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-----------------HHHHHHHhCCCCCCC
Confidence 556677889999999999999999999942 245688888888884
No 103
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.00 E-value=0.11 Score=37.45 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=47.4
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHH-c----CCCCCCHHHH-----------HHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 25 CNGFQLLMDKVKGVITTESLKLNAAV-L----GLQDLTDDKL-----------ASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 25 ~~~F~~~D~~~~G~i~~~el~~~l~~-~----~~~~~~~~~~-----------~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
+..|.++|.|++|+++-.+|..+++. + . ..-.++.+ +-+++..|.|.|..|+.++|++...+.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 34578888999999999999888876 2 2 11112221 226788999999999999999987765
Q ss_pred Ch
Q 033580 89 SP 90 (116)
Q Consensus 89 ~~ 90 (116)
..
T Consensus 326 ef 327 (442)
T KOG3866|consen 326 EF 327 (442)
T ss_pred cc
Confidence 43
No 104
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=93.98 E-value=0.12 Score=44.18 Aligned_cols=60 Identities=12% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 27 GFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 27 ~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
-|+-+|+++.|.|+..+|..++..-. ..+..+++-++.....+.+..++|++|+.-+...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 37788999999999999999997533 4678889999988888888999999999877653
No 105
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.87 E-value=0.38 Score=33.76 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+.++.=..+|.+.+|.+|.+||...+--.. ....-.++..++..-+.+++.+++.++.+..---
T Consensus 282 RkkEFeElIDsNhDGivTaeELe~y~dP~n-~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~ 345 (362)
T KOG4251|consen 282 RKKEFEELIDSNHDGIVTAEELEDYVDPQN-FRLALNEVNDIMALTDANNDEKLSLEELLERDWL 345 (362)
T ss_pred HHHHHHHHhhcCCccceeHHHHHhhcCchh-hhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhh
Confidence 334444567999999999999988764444 4455567777888888899999999998765433
No 106
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=93.86 E-value=0.2 Score=30.32 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
.-+.+.+..++...|.+++|+++.+||.-++..+
T Consensus 39 ~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 39 GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4456899999999999999999999998877754
No 107
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.31 E-value=0.092 Score=32.35 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 54 QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 54 ~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..+++++++.++..+..|..|+|.|.+|+.-+..
T Consensus 2 qiLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 2 QILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ----HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 3578999999999999999999999999988774
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.15 E-value=0.66 Score=37.86 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCH-----HHHHHHHHhcCCCCCCcccHHHHHHHHHhhCh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTD-----DKLASMVKEGDLDGDGALNQMEFCVLMFRLSP 90 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~-----~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~ 90 (116)
..+++..|+.+++...|..+.+++..++-.+| .+... .++..++...+.+..|++++.+|...|.+...
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLG-YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 46899999999999999999999999999999 76653 23444566677777799999999999987543
No 109
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.35 E-value=1.4 Score=26.00 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHc-------CCC----CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVL-------GLQ----DLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~-------~~~----~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
.++++.+|+.+ .|++|.++...|...|+.+ | . ...+..+...|.... ....|+-++|+..+...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vg-E~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVG-EGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT--GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhC-ccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 35788999999 8889999999988777752 2 2 125666777787763 45669999999999864
No 110
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=91.82 E-value=2.1 Score=29.25 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=53.8
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc--CCCCCCHHHHHHHHHh--cCCCCCCcc
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL--GLQDLTDDKLASMVKE--GDLDGDGAL 76 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~--~~~~~~~~~~~~l~~~--~d~~~~g~I 76 (116)
|||+.|.-.+|.+.-. +...-.++.+....|.|.+|+|+..++--+++.. | .-..+.....+-+. .|....|.-
T Consensus 115 fIdl~ELK~mmEKLga-pQTHL~lK~mikeVded~dgklSfreflLIfrkaaag-EL~~ds~~~~LAr~~eVDVskeGV~ 192 (244)
T KOG0041|consen 115 FIDLMELKRMMEKLGA-PQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG-ELQEDSGLLRLARLSEVDVSKEGVS 192 (244)
T ss_pred cccHHHHHHHHHHhCC-chhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc-ccccchHHHHHHHhcccchhhhhhh
Confidence 6899999888887643 4445577899999999999999999998888874 3 22234444444333 565555543
Q ss_pred cHHHHH
Q 033580 77 NQMEFC 82 (116)
Q Consensus 77 ~~~eF~ 82 (116)
-=..|.
T Consensus 193 GAknFF 198 (244)
T KOG0041|consen 193 GAKNFF 198 (244)
T ss_pred hHHHHH
Confidence 333343
No 111
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.49 E-value=2.8 Score=27.74 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=46.6
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-----------------------------------------------
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ----------------------------------------------- 54 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~----------------------------------------------- 54 (116)
..++.-..-||+|+||.|.+-|--.-++.+| .
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLG-f~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALG-FGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhC-CCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 4567777788999999999887544444221 1
Q ss_pred ------CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 55 ------DLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 55 ------~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
...+...+++|..++..+.+.+++.|...++..
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 123455788888888777778999998888876
No 112
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.63 E-value=0.15 Score=41.48 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 19 GLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
.....+..+|...|.+++|.|+..+.+..+...| ++...+..++...+..+.|.+++.+|+-.+-..
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3445677899999999999999999999887766 677888999999999999999999888776643
No 113
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=89.15 E-value=0.61 Score=26.58 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=39.7
Q ss_pred CcChHHHHHHHHhhcCCC-ChHHHHHHHHHhhccC----CCCcccHHHHHHHHHH
Q 033580 1 MVDFEDLLPVMADKLGGE-GLINELCNGFQLLMDK----VKGVITTESLKLNAAV 50 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~----~~G~i~~~el~~~l~~ 50 (116)
.|+.++|..++....+.. ...+.+..++..|.++ ..+.++.++|...|..
T Consensus 15 ~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 15 YMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp SEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 367889999998877653 3578889999998654 4799999999998865
No 114
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=88.13 E-value=1.9 Score=31.60 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=52.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAV-LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+.+...|.+||.+.+|.++..+--..+.. ++ .+.+..-++--|+.++...||.+.-++|..+++-
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~-p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeC-CCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 56788999999999999998886555555 45 6677888888899999999998888777766664
No 115
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.92 E-value=2.9 Score=36.56 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=56.4
Q ss_pred cChHHHHHHHHhhcC------CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCCCCC
Q 033580 2 VDFEDLLPVMADKLG------GEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGL-QDLTDDKLASMVKEGDLDGDG 74 (116)
Q Consensus 2 i~f~eFl~~~~~~~~------~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~l~~~~d~~~~g 74 (116)
+++.+|-..+...-. ...+...++......|++.+|+|+..+.-..|-.--- ...++++++.-|+.++. +..
T Consensus 2270 Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~ 2348 (2399)
T KOG0040|consen 2270 LDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKP 2348 (2399)
T ss_pred CcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCc
Confidence 577788777765432 2234458999999999999999999998776654210 23566788888888887 455
Q ss_pred cccHHHHHH
Q 033580 75 ALNQMEFCV 83 (116)
Q Consensus 75 ~I~~~eF~~ 83 (116)
+|..++-..
T Consensus 2349 yvtke~~~~ 2357 (2399)
T KOG0040|consen 2349 YVTKEELYQ 2357 (2399)
T ss_pred cccHHHHHh
Confidence 666665433
No 116
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=87.88 E-value=3.7 Score=24.21 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred CCCcccHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 35 VKGVITTESLKLNAAVLGL-QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~-~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
.||.++..|...+-..+.. ..+++.+...++..+........++.+|...+....
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF 67 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4899999886655544220 136788888888877766667789999999887643
No 117
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.82 E-value=2.4 Score=33.68 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=62.7
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc---CC----CCCCHHHHHHHHHhcCCCCCC
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL---GL----QDLTDDKLASMVKEGDLDGDG 74 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~---~~----~~~~~~~~~~l~~~~d~~~~g 74 (116)
|+++||. ...++.+.+++..|.++|. .+|.++.+++..++..+ ++ .+...+....++...+.+..+
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 5778887 3457788999999999999 89999999998887763 20 123445556677888888888
Q ss_pred cccHHHHHHHHHhhChh
Q 033580 75 ALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 75 ~I~~~eF~~~~~~~~~~ 91 (116)
.+.++++..++......
T Consensus 77 y~~~~~~~~ll~~~~~~ 93 (646)
T KOG0039|consen 77 YITNEDLEILLLQIPTL 93 (646)
T ss_pred eeeecchhHHHHhchHH
Confidence 88888888887765433
No 118
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.12 E-value=1.2 Score=34.86 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCC--CHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDL--TDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~--~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
.+-+..+|..||.++||.++..|++.++...+ ..+ ...+.+ .-..+..|.+++.-|+..+.-
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P-~~pW~~~~~~~----~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAP-GSPWTSSPYKD----STVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC-CCCCCCCcccc----cceecccceeehhhHHHHHHH
Confidence 45678999999999999999999999998865 322 001101 111125788999999887764
No 119
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=0.86 Score=33.77 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHH-HHHHHHhcCCCCCCcccHHHHHHH
Q 033580 17 GEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDK-LASMVKEGDLDGDGALNQMEFCVL 84 (116)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~-~~~l~~~~d~~~~g~I~~~eF~~~ 84 (116)
..++.+.++++|+.+|+...|+|+..-++.++...+ ..+++.. +..+-+.+++.+-|-|-..+|..-
T Consensus 304 ~~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N-~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 304 PENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN-RLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc-ccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 345578999999999999999999999999999988 6666544 343444566666665555555443
No 120
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=84.42 E-value=3.5 Score=27.59 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=47.0
Q ss_pred HHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhc
Q 033580 47 NAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNNA 111 (116)
Q Consensus 47 ~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (116)
.+..++ ..+++++++.+...+.- |--.+++..|..++-.+....-.....||.+|+.-.+|--
T Consensus 86 ~~~~L~-~~Lt~~Qie~vkd~mTy-g~v~~T~k~y~~mvP~Lteeek~~I~~~L~eARE~A~D~~ 148 (188)
T PF12875_consen 86 YMAKLS-KYLTEEQIEQVKDGMTY-GVVPFTYKGYLDMVPSLTEEEKAQILTWLKEAREFAMDAK 148 (188)
T ss_dssp HHHHHT-TT--HHHHHHHHHHCTT-THHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHH-hhcCHHHHHHHHccccc-eehhhhHHHHHHHcCcccHHHHHHHHHHHHHHHHHhcccc
Confidence 455577 88999999999988884 3345888999999988888888899999999998877653
No 121
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.38 E-value=6.3 Score=31.06 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHhh
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ-DLTDDKLASMVKEGDL-DGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~l~~~~d~-~~~g~I~~~eF~~~~~~~ 88 (116)
.-.++..+|..+-. ++.++.++|...|....-. ..+.+.+..++..+.. ...+.++++.|..++...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 44589999999854 4799999999999887512 2467778888887642 245679999999999863
No 122
>PLN02228 Phosphoinositide phospholipase C
Probab=84.00 E-value=8.7 Score=30.22 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhh
Q 033580 17 GEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ-DLTDDKLASMVKEGDLD----GDGALNQMEFCVLMFRL 88 (116)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~-~~~~~~~~~l~~~~d~~----~~g~I~~~eF~~~~~~~ 88 (116)
...+-.++..+|..+-. ++.++.++|...|+..... ..+.+.+..++..+... ..|.++.+.|..++...
T Consensus 19 ~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 19 TREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 34466789999999854 3689999999999886512 24556788888887643 34679999999999763
No 123
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.53 E-value=9.5 Score=24.53 Aligned_cols=59 Identities=14% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHHhhccCCCCcccHHHH---HHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 26 NGFQLLMDKVKGVITTESL---KLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 26 ~~F~~~D~~~~G~i~~~el---~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
-+|++. +-||.++..|. +.++.. . ..++.+++..++.....-+...+++-.|...+++.
T Consensus 34 Llf~Vm--~ADG~v~~~E~~a~r~il~~-~-f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVM--EADGTVSESEREAFRAILKE-N-FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHH--hcccCcCHHHHHHHHHHHHH-H-cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 667776 55788887774 444443 1 24788999999988877777889999999998853
No 124
>PLN02230 phosphoinositide phospholipase C 4
Probab=82.87 E-value=9.2 Score=30.29 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCC---CCCHHHHHHHHHhcC-------CCCCCcccHHHHHHHHHh
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQ---DLTDDKLASMVKEGD-------LDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~---~~~~~~~~~l~~~~d-------~~~~g~I~~~eF~~~~~~ 87 (116)
..+-.++..+|..+-.++ +.++.++|...|.... . ..+.+.+..++..+- .-..+.++.+.|..++..
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG-GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC-CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 345578999999996444 8999999999998865 3 235666777775431 123456999999999876
No 125
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=82.54 E-value=8.7 Score=23.39 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=46.2
Q ss_pred HhhccCCCCcccHHHHHHHHHH----------cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChh-hHHHHH
Q 033580 29 QLLMDKVKGVITTESLKLNAAV----------LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQ-LMEESQ 97 (116)
Q Consensus 29 ~~~D~~~~G~i~~~el~~~l~~----------~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~-~~~~~~ 97 (116)
++||...+-+|+.++++.+++. .| ..++..-+-+++-+...++...++-. |+.-+.+.... ...--.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg-eDiT~~iL~QII~E~E~~g~~~lp~~-~L~qlIr~yg~~~q~~~~ 87 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG-DDLTRSILLQIIAEEESGGEPVLSTD-FLTQIIRFYGGSMQSFVP 87 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC-chhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHhChhHHHHHH
Confidence 4678899999999999998885 24 45566666666666655555656664 44444433322 323333
Q ss_pred HHHHHHHHH
Q 033580 98 LWLREALNE 106 (116)
Q Consensus 98 ~~~~~~~~~ 106 (116)
..|+.....
T Consensus 88 ~yLe~s~~~ 96 (107)
T TIGR01848 88 QYLEASLEM 96 (107)
T ss_pred HHHHHHHHH
Confidence 445554433
No 126
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=81.90 E-value=5.3 Score=24.00 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC---CCCCcccHHHHHHHHHh
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDL---DGDGALNQMEFCVLMFR 87 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~---~~~g~I~~~eF~~~~~~ 87 (116)
..+++-|..+.. +|+++...|.+++ | .+-+.+-+.++|..+.. -....|+.+|...++..
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---G-M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---G-MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---C-CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 455556666645 9999999998887 5 55566777777764422 12466999998887764
No 127
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.76 E-value=20 Score=30.02 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=62.8
Q ss_pred ChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCC---------CCCCHHHHHHHHHhcCCC--
Q 033580 3 DFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGL---------QDLTDDKLASMVKEGDLD-- 71 (116)
Q Consensus 3 ~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~---------~~~~~~~~~~l~~~~d~~-- 71 (116)
+|+-|..++.+.. +-.++..+|..+-.++.-++|.++|-.+|..-.- .+..+..+..+++.+..+
T Consensus 206 ~~e~f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 206 TLEKFYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred cHHHHHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 4556666665542 2347899999998888899999999999986320 134677888899888776
Q ss_pred --CCCcccHHHHHHHHHhhC
Q 033580 72 --GDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 72 --~~g~I~~~eF~~~~~~~~ 89 (116)
..|+|+-+-|+.++....
T Consensus 282 ~a~~gqms~dgf~ryl~gdE 301 (1189)
T KOG1265|consen 282 NAEKGQMSTDGFVRYLMGDE 301 (1189)
T ss_pred hhhccccchhhhHHHhhCCc
Confidence 478899999999998743
No 128
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=79.36 E-value=14 Score=24.59 Aligned_cols=65 Identities=11% Similarity=-0.053 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCC--CCC--CHHHHH--HHHHhcCCCCCCcccHHHHHHHHH
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGL--QDL--TDDKLA--SMVKEGDLDGDGALNQMEFCVLMF 86 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~--~~~~~~--~l~~~~d~~~~g~I~~~eF~~~~~ 86 (116)
.+++.++|..+++.+.+.+|..|+.++++.-.. .+. ....++ .++. +-.+.+|.+..++-..++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHHhhhcc
Confidence 368999999999999999999999999886220 111 111222 2222 3345689999887655543
No 129
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=2.5 Score=32.65 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 033580 17 GEGLINELCNGFQLLMDKVKGVITTESLKLNAAV 50 (116)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 50 (116)
+.-+..++..++++.|-++||.++..||..++..
T Consensus 260 Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 260 SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 4556789999999999999999999999988875
No 130
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=77.74 E-value=7.1 Score=31.05 Aligned_cols=62 Identities=15% Similarity=-0.100 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHH
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWL 100 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~ 100 (116)
|+...+..+++.+-+-..+..-...+|...|.+.+|.|+|.+++..+.....+.+.+..+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~ 596 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLL 596 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444555555443112344556778999999999999999999999987777666555443
No 131
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=77.22 E-value=10 Score=23.41 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=48.4
Q ss_pred hHHHHHHHHhhcCCCChH---HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHh---cCCCCCCccc
Q 033580 4 FEDLLPVMADKLGGEGLI---NELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKE---GDLDGDGALN 77 (116)
Q Consensus 4 f~eFl~~~~~~~~~~~~~---~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~---~d~~~~g~I~ 77 (116)
|++|+.-+.......+.. ..++..+..+ ...|+..+-..+..++. .++..++.. .. ...+.++
T Consensus 2 ~~~fl~~V~~~~~l~~~~~A~~a~~avL~~L----~~rL~~~ea~~La~qLP------~~l~~~l~~gw~~~-~~~~~~~ 70 (125)
T PF10025_consen 2 YDEFLDEVRERAGLPDREEAYRATRAVLHTL----RERLPPEEAADLAAQLP------MELRGILYEGWRPS-EGPGRFD 70 (125)
T ss_dssp HHHHHHHHHHHHT---HHHHHHHHHHHHHHH----HTTS-HHHHHHHHTTS-------HHHHHHHHTT--TT-S-----S
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHCCHHHHHHHHHhCC------HHHHHHHHhcccCC-CCCCCCC
Confidence 678888777766532222 1223333333 22344444444332222 333334433 22 2233499
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhcC
Q 033580 78 QMEFCVLMFRLSPQLMEESQLWLREALNEELNNAG 112 (116)
Q Consensus 78 ~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (116)
.++|+.-+........+....++..+++..|....
T Consensus 71 ~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l~~~v 105 (125)
T PF10025_consen 71 LDEFLARVAERLGGADEDDAERLARAVFAALREAV 105 (125)
T ss_dssp HHHHHHHHHHTSEETTEE-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHC
Confidence 99999999985544444355678888888876543
No 132
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=77.14 E-value=7.7 Score=19.55 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=20.0
Q ss_pred HHHHHHHHhhc--cCCCCcccHHHHHHHHHH
Q 033580 22 NELCNGFQLLM--DKVKGVITTESLKLNAAV 50 (116)
Q Consensus 22 ~~~~~~F~~~D--~~~~G~i~~~el~~~l~~ 50 (116)
..+..+|..|. ......++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45667777775 234667888888887764
No 133
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=76.60 E-value=15 Score=22.60 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCV 83 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~ 83 (116)
+..+|-++-..++..+|.++++.+|...| ..+....+..+++.+.. .+.++.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaG-veVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVN-ADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34455555556677799999999999999 99999999999988863 45666655
No 134
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=76.06 E-value=15 Score=22.46 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=44.4
Q ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033580 24 LCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMF 86 (116)
Q Consensus 24 ~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~ 86 (116)
+..+|-++...++...+..+++.+|...| ....++.+..++..+.. + +.+|.+.-=+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG-~E~d~e~i~~visel~G----K-~i~ElIA~G~ 59 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVG-AEIDDERINLVLSELKG----K-DIEELIAAGR 59 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhC-cccCHHHHHHHHHHhcC----C-CHHHHHHHhH
Confidence 44567777777788899999999999999 99999999999988873 2 5566554433
No 135
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=75.76 E-value=7.2 Score=21.85 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=24.8
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAAV 50 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~ 50 (116)
++|...+..+...+. ...+..+...|+.=+.++|+.++|-+.++.
T Consensus 9 ~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 9 MPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred ccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 455566666555442 223444444444445677777777666665
No 136
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=74.09 E-value=3.5 Score=23.13 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=34.0
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
.++...|-.++ . ..++...++.+...|+.-..++|+-++|+..+...
T Consensus 8 ~~~F~~L~~~l---~-~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSAL---S-KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHH---H-HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34544444444 3 55677778888888877778999999999999853
No 137
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.91 E-value=4.6 Score=35.47 Aligned_cols=70 Identities=7% Similarity=0.081 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDL----TDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~----~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
....+++.+++..+|++..|+|...++...++.+. .++ ..+. .-+--.+....++.|++.+-+.++.+..
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~-ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD-PPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC-CccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 45568999999999999999999999999999864 322 1111 1122234555788999999888888744
No 138
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=73.84 E-value=13 Score=20.64 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLM 85 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~ 85 (116)
++.+++..++...| ..++.+++..+++.-+..+-...+-+.+..++
T Consensus 14 l~d~~m~~if~l~~-~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAG-FEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcC-CccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 44567778888888 88888888888877554433344444444443
No 139
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=73.26 E-value=1.6 Score=29.69 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=39.8
Q ss_pred HHhhcc-CCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 28 FQLLMD-KVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 28 F~~~D~-~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
|..+|. .-||++|..||..+- .-- + +-+.-...+|...|.++||.|+.+|+...+.-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~-ap~-i-pme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR-APL-I-PMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eccccCCCcccccccccccccc-CCc-c-cHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 566665 449999999886532 111 1 12344567899999999999999999776653
No 140
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=73.06 E-value=16 Score=21.32 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=38.3
Q ss_pred CcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 37 GVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 37 G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..||..||.......+ .+++.+.++.+++.+-.+.-.-.+-++=..++..
T Consensus 13 n~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 13 NNITAKELLKYSKQYN-ISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred hcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 4589999999999999 9999999999998877655444555555555554
No 141
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=72.73 E-value=29 Score=28.27 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=44.8
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhhChhh
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVLGL-QDLTDDKLASMVKEGDLD----GDGALNQMEFCVLMFRLSPQL 92 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~-~~~~~~~~~~l~~~~d~~----~~g~I~~~eF~~~~~~~~~~~ 92 (116)
++...|..+-.+ .++++.++|.+.+...+. ...+.+.++++++.+... ..+.++.+.|..++.......
T Consensus 206 ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 206 EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 566666666444 778888888777776531 245667777777666443 334588888888877654443
No 142
>PLN02223 phosphoinositide phospholipase C
Probab=72.64 E-value=23 Score=27.75 Aligned_cols=71 Identities=11% Similarity=-0.099 Sum_probs=50.4
Q ss_pred CCChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc---C-CCCCCHHHHHHHHHhcCCC--------CCCcccHHHHHHH
Q 033580 17 GEGLINELCNGFQLLMDKVKGVITTESLKLNAAVL---G-LQDLTDDKLASMVKEGDLD--------GDGALNQMEFCVL 84 (116)
Q Consensus 17 ~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~---~-~~~~~~~~~~~l~~~~d~~--------~~g~I~~~eF~~~ 84 (116)
..++-+.++.+|..+ ..+.|.++.+.|.+.+..+ . ....+.++++.++..+-.. ..+.++.+.|..+
T Consensus 11 ~~~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 11 PANQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCCCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 344567899999998 4678899999999988433 2 0245677777777654321 2356999999999
Q ss_pred HHhh
Q 033580 85 MFRL 88 (116)
Q Consensus 85 ~~~~ 88 (116)
+...
T Consensus 90 L~s~ 93 (537)
T PLN02223 90 LFST 93 (537)
T ss_pred hcCc
Confidence 9863
No 143
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=72.29 E-value=6.2 Score=25.18 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=27.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHhhChh
Q 033580 35 VKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDL-------DGDGALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~-------~~~g~I~~~eF~~~~~~~~~~ 91 (116)
.-+.|++.||.++=..+. .+...+..+++.+.. +..+.|+|+.|..+|......
T Consensus 4 ~~~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~ 64 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV 64 (138)
T ss_dssp --S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-
T ss_pred ceeccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC
Confidence 346788888776444332 123345555554422 234579999999999876533
No 144
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=71.53 E-value=17 Score=22.45 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCCcccHHHHHHHHHHc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 34 KVKGVITTESLKLNAAVL-GLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~-~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
-.||.++..|...+...+ ....+++.....+...++......+++.+|+..+..
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 469999999987776665 102355666777776666554456888888877665
No 145
>PLN02952 phosphoinositide phospholipase C
Probab=70.14 E-value=19 Score=28.67 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHHHcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 35 VKGVITTESLKLNAAVLGL-QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~-~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
+.|.++..++....+.+.. ...+..++..+|..+..+ .+.++.++|..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 4689999999877776540 234678999999999754 4679999999999874
No 146
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.87 E-value=9.1 Score=28.91 Aligned_cols=55 Identities=27% Similarity=0.376 Sum_probs=42.4
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033580 25 CNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCV 83 (116)
Q Consensus 25 ~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~ 83 (116)
-++|-.+ ..-+|+|+-..-+..+... +++...+-.+|+..|.+.||.++-+||.-
T Consensus 447 de~fy~l-~p~~gk~sg~~ak~~mv~s---klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 447 DEIFYTL-SPVNGKLSGRNAKKEMVKS---KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred Hhhhhcc-cccCceeccchhHHHHHhc---cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3455554 3448899887777777544 47888899999999999999999999953
No 147
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=68.00 E-value=25 Score=21.46 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 26 NGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 26 ~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
.+|-++-..++..+|.++++.+|...| ..+....+..+++.+.. .+.++.+.-...
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaG-veVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVG-VEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 445555556777899999999999999 88988888888888763 556777665554
No 148
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=67.84 E-value=15 Score=18.83 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHh
Q 033580 19 GLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKE 67 (116)
Q Consensus 19 ~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~ 67 (116)
.....+..+|.. +.+.+..++..+...+| ++...+..+|..
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 345667788876 56889999988888888 788888888764
No 149
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=65.76 E-value=10 Score=24.20 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=23.9
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCC
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKV 35 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~ 35 (116)
|+|+.|..+|...+.-.-+.+-.+++|..|-...
T Consensus 49 Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 49 IDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp E-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 8999999999999876677888899999996544
No 150
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=64.84 E-value=18 Score=19.92 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 36 KGVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
+--|+.+-++.++.+.| .++++..+.++.+.+.
T Consensus 29 NPpine~mir~M~~QMG-~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMG-RKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhC-CCccHHHHHHHHHHHH
Confidence 45689999999999999 9999999998887653
No 151
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=64.49 E-value=10 Score=28.13 Aligned_cols=68 Identities=24% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAVLGL--QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~--~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
.+++.+|..+-.+..+......+..+-+.+.. .+.=..++-.||..+|.+.|+.++-.|...+-....
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn 280 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKN 280 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCc
Confidence 57889999998777777766666555433320 123356788999999999999999999877766543
No 152
>PRK00523 hypothetical protein; Provisional
Probab=62.42 E-value=21 Score=20.15 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 033580 36 KGVITTESLKLNAAVLGLQDLTDDKLASMVKEG 68 (116)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~ 68 (116)
+--|+.+-++.++.+.| .++++..+.++.+.+
T Consensus 37 NPpine~mir~M~~QMG-qKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMG-RKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 45689999999999999 999999999988776
No 153
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=61.96 E-value=8 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=26.4
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDL 70 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~ 70 (116)
.++.+... ....|+||.+++..+|... .++.+.++.++..+..
T Consensus 8 ~i~~Li~~--gK~~G~lT~~eI~~~L~~~---~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 8 AIKKLIEK--GKKKGYLTYDEINDALPED---DLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHH--HHHHSS-BHHHHHHH-S-S------HHHHHHHHHHHHT
T ss_pred HHHHHHHH--HhhcCcCCHHHHHHHcCcc---CCCHHHHHHHHHHHHH
Confidence 34444443 2458999999999998633 3778889998887654
No 154
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=61.15 E-value=29 Score=19.84 Aligned_cols=55 Identities=24% Similarity=0.183 Sum_probs=41.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHH
Q 033580 34 KVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLME 94 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~ 94 (116)
-+.|.|+.++...+-. .+.+.+.+..++..+.. -|...|..|+..+....|.+..
T Consensus 25 ~~~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 25 HGKKVITQEQYSEVRA----EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HHCCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChHHHh
Confidence 3468888888766553 33567888888888775 5778999999999877776654
No 155
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=59.36 E-value=20 Score=19.77 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=19.0
Q ss_pred HhhccCCCCcccHHHHHHHHHH
Q 033580 29 QLLMDKVKGVITTESLKLNAAV 50 (116)
Q Consensus 29 ~~~D~~~~G~i~~~el~~~l~~ 50 (116)
++||.....+|+.++++++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4678899999999999998875
No 156
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=58.62 E-value=31 Score=19.31 Aligned_cols=12 Identities=33% Similarity=0.088 Sum_probs=5.2
Q ss_pred ccHHHHHHHHHH
Q 033580 39 ITTESLKLNAAV 50 (116)
Q Consensus 39 i~~~el~~~l~~ 50 (116)
.+.++|+..+..
T Consensus 27 ~~W~~~~~~~~~ 38 (96)
T PF03732_consen 27 ITWEEFKDAFRK 38 (96)
T ss_pred CCHHHHHHHHHH
Confidence 344444444443
No 157
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=57.45 E-value=28 Score=27.68 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCCCCHHHHHHH---HHhcCCC--CCCcccHHHHHHHHH
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAV-LGLQDLTDDKLASM---VKEGDLD--GDGALNQMEFCVLMF 86 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~l---~~~~d~~--~~g~I~~~eF~~~~~ 86 (116)
..+.++|.+.|.|.||.++-.|+...=.. ++ .++...+++.+ +...-++ .+..+...-|+-+..
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~-~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFN-TPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcC-CCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 56789999999999999999988654444 45 66766655543 3332222 344566666665544
No 158
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=56.93 E-value=16 Score=15.44 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=7.3
Q ss_pred ccCCCCcccHHHHH
Q 033580 32 MDKVKGVITTESLK 45 (116)
Q Consensus 32 D~~~~G~i~~~el~ 45 (116)
|-|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34556666655543
No 159
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=56.89 E-value=5.8 Score=26.63 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHH
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMV 65 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~ 65 (116)
-+.++++|..||..+=-..+.+++.++|...| +......++.++
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~g-IIR~r~KI~A~i 97 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAG-IIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc-hhhhHHHHHHHH
Confidence 35799999999999999999999999999887 655555544433
No 160
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.81 E-value=28 Score=19.54 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 033580 36 KGVITTESLKLNAAVLGLQDLTDDKLASMVKEG 68 (116)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~ 68 (116)
+-.|+.+-++.++.+.| .++++..+.++++..
T Consensus 36 NPpine~~iR~M~~qmG-qKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMG-QKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 45689999999999999 999999999888764
No 161
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=56.47 E-value=25 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=24.8
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 32 MDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 32 D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
.-+.+|++..++|...+..-+ ..++.+++.+++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~-~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG-LWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcC-CCCCHHHHHHHHhhCC
Confidence 468899999999999998877 7788999999997644
No 162
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=55.17 E-value=13 Score=27.43 Aligned_cols=32 Identities=9% Similarity=-0.164 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
...-.++.|+..|-|+|..|+..|++..|...
T Consensus 368 ~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 368 PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred HHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 44566888999999999999999998888653
No 163
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=54.32 E-value=38 Score=22.57 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.2
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 33 DKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 33 ~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
-|.+|++..++|...++.-+ ..++.+.+.+++..-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~-~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY-KWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc-CCCCHHHHHHHHHcCC
Confidence 47899999999999887666 6789999999987644
No 164
>PRK01844 hypothetical protein; Provisional
Probab=53.68 E-value=34 Score=19.32 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 033580 36 KGVITTESLKLNAAVLGLQDLTDDKLASMVKEG 68 (116)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~ 68 (116)
+--|+.+-++..+.+.| .++++..+.++.+..
T Consensus 36 NPpine~mir~Mm~QMG-qkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMG-QKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 44689999999999999 999999999988766
No 165
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=52.50 E-value=53 Score=20.19 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=37.4
Q ss_pred HHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033580 28 FQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCV 83 (116)
Q Consensus 28 F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~ 83 (116)
|-+.--.++..+|.++++.+|...| ..+....+..+++.+.. -+.++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaG-vevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVG-ADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3333335566799999999999999 88888888888888853 45566653
No 166
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=52.26 E-value=37 Score=18.29 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=22.5
Q ss_pred CcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 37 GVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 37 G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
-.+|.+||...+..++ ..++..++-.+|.+.-
T Consensus 8 ~~lTeEEl~~~i~~L~-~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 8 KKLSKEELNELINSLD-EIPNRNDMLIIWNQVH 39 (61)
T ss_pred HHccHHHHHHHHHhhc-CCCCHHHHHHHHHHHH
Confidence 3567777778787777 7777777777766543
No 167
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=52.11 E-value=33 Score=20.05 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=29.1
Q ss_pred CCCCcccHHHHHHHHHHcC-CCC---CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 34 KVKGVITTESLKLNAAVLG-LQD---LTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~-~~~---~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
..||.++..|...+.+.+. ... .....+..++......- ...+..++...+....
T Consensus 14 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (111)
T cd07176 14 AADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLL 72 (111)
T ss_pred HhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhC
Confidence 3488888888776666543 022 23344445554433210 0344567777666544
No 168
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.79 E-value=11 Score=31.13 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..+...|+..|...+|.|+..+-...+...| +.+..+..+|...+..+.|.++...|...+..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~---L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG---LPDQVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc---cchhhhhccccccccccCCccccccccccchH
Confidence 5678899999999999999999888777666 77788888898899888899999999887764
No 169
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=50.53 E-value=49 Score=19.22 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=29.5
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033580 34 KVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRL 88 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~ 88 (116)
..||.++..|...+-+.+.....++.....+...+....+...++.+|...+...
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA 65 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 3489999888654444332122333344444443332222236778888887763
No 170
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=50.46 E-value=52 Score=19.46 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEG 68 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~ 68 (116)
+.+.++.+|..+- ..|...+.+.+.+.+| +++.+++.+-...
T Consensus 2 ~~~~l~~~f~~i~----~~V~~~~Wk~laR~LG---Lse~~I~~i~~~~ 43 (96)
T cd08315 2 PQETLRRSFDHFI----KEVPFDSWNRLMRQLG---LSENEIDVAKANE 43 (96)
T ss_pred cHhHHHHHHHHHH----HHCCHHHHHHHHHHcC---CCHHHHHHHHHHC
Confidence 3456777777763 2366788888888888 7777777666553
No 171
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=50.31 E-value=35 Score=17.46 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
....|...|.. +.+++..+...+...+| ++...+..+|.
T Consensus 11 q~~~L~~~f~~-----~~~p~~~~~~~la~~l~---l~~~~V~~WF~ 49 (57)
T PF00046_consen 11 QLKVLEEYFQE-----NPYPSKEEREELAKELG---LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHH-----SSSCHHHHHHHHHHHHT---SSHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hcccccccccccccccc---ccccccccCHH
Confidence 44556666663 77888888888888888 78888888775
No 172
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=50.29 E-value=61 Score=21.24 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=44.6
Q ss_pred HHHHHHHHhh----ccCCCC-cccHHHHHHHHHHcCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 22 NELCNGFQLL----MDKVKG-VITTESLKLNAAVLGL---QDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 22 ~~~~~~F~~~----D~~~~G-~i~~~el~~~l~~~~~---~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
..+.+.|+.| |...+| .++...+..++..++. ..++...+.-.|..+....-+.|+|++|...+..+.
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 3455555555 334444 4556677888888752 245556666677777766677899999987777654
No 173
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=49.95 E-value=54 Score=19.57 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCC---CcccHHHHHHHHHhhChh
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGD---GALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~---g~I~~~eF~~~~~~~~~~ 91 (116)
+...+...+|..+. ..++++++.++...+...+. ..++...++.-+....|.
T Consensus 20 vP~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~ 74 (96)
T PF11829_consen 20 VPPTDYVPLLALLR-RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPT 74 (96)
T ss_dssp B-HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-
T ss_pred CCCCccHHHHHHhc-ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcC
Confidence 56666667777777 77777777777666533222 345566665555554433
No 174
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=49.74 E-value=57 Score=19.74 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+|.++++.+|...| ..++...+..+++.+.. .+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaG-veVe~~~~~~~~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAG-AEIEPERVKLFLSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcC-CCcCHHHHHHHHHHHcC-----CCHHHHHHHHHh
Confidence 99999999999999 99999999999888752 466777766554
No 175
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=49.41 E-value=51 Score=24.08 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=4.9
Q ss_pred CCHHHHHHHHHh
Q 033580 56 LTDDKLASMVKE 67 (116)
Q Consensus 56 ~~~~~~~~l~~~ 67 (116)
++.+++-++++.
T Consensus 303 itReeal~~v~~ 314 (343)
T TIGR03573 303 ITREEAIELVKE 314 (343)
T ss_pred CCHHHHHHHHHH
Confidence 334444444444
No 176
>PHA02105 hypothetical protein
Probab=47.60 E-value=44 Score=18.04 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHcCC--CCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHH
Q 033580 38 VITTESLKLNAAVLGL--QDLTDDKLASMVKEGDLD--GDGALNQMEFCVLM 85 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~--~~~~~~~~~~l~~~~d~~--~~g~I~~~eF~~~~ 85 (116)
+++.++++.++..-.. .++..+-++++-.-+..- .--.++|+||..++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 4677777777766431 244555555554444443 23458899887665
No 177
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=46.48 E-value=34 Score=21.35 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=13.1
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHH
Q 033580 25 CNGFQLLMDKVKGVITTESLKLNAA 49 (116)
Q Consensus 25 ~~~F~~~D~~~~G~i~~~el~~~l~ 49 (116)
-.+...||++++|.|+.-+++.++.
T Consensus 100 n~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 100 NWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHhCCCCCCeeehhHHHHHHH
Confidence 3445666666666666666665554
No 178
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=46.17 E-value=1e+02 Score=21.75 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=33.7
Q ss_pred cCCCCcccHHHHHHHHHHcC-CCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 33 DKVKGVITTESLKLNAAVLG-LQDLTDDK---LASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 33 ~~~~G~i~~~el~~~l~~~~-~~~~~~~~---~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
...||.|+..|+. +.+.+. ...+++++ +.++|+.-. ....++.+|+.-+....
T Consensus 66 AkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 66 AKAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK---EPDFPLREKLRQFRSVC 122 (267)
T ss_pred HhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHh
Confidence 4569999999986 334321 01256665 555665544 34488899998887644
No 179
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=44.07 E-value=72 Score=24.97 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=46.1
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHh---cCC-----CCCCcccHHHHHHHHHh
Q 033580 26 NGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKE---GDL-----DGDGALNQMEFCVLMFR 87 (116)
Q Consensus 26 ~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~---~d~-----~~~g~I~~~eF~~~~~~ 87 (116)
.+|..|-....+.++.--|.++|+..| ..-++.-+..++.. .+. ...+.++.+-|..++..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstG-LrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTG-LRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcC-CCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 457777666689999999999999999 88887777666543 332 23446999999888764
No 180
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=44.06 E-value=1.5e+02 Score=23.01 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChh--hHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAV-LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQ--LMEES 96 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~-~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~--~~~~~ 96 (116)
..+.++.+-+.+|.|.+|-|+.+|=...|+. +. ..-+...-.+ .+-. .|..|+.++.-..+..-.-- -.+..
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk-y~~~~~kr~~---~fH~-dD~~ItVedLWeaW~~Sev~nWT~e~t 140 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMK-YRDSTRKRSE---KFHG-DDKHITVEDLWEAWKESEVHNWTNERT 140 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHHHHhh-cccchhhhhh---hccC-CccceeHHHHHHHHHhhhhhcchHHHH
Confidence 3577889999999999999999887666665 22 2212111111 2332 46789999988887752211 34455
Q ss_pred HHHHHHHH
Q 033580 97 QLWLREAL 104 (116)
Q Consensus 97 ~~~~~~~~ 104 (116)
..||+.-+
T Consensus 141 vqWLi~~V 148 (575)
T KOG4403|consen 141 VQWLINDV 148 (575)
T ss_pred HHHHHHhc
Confidence 66766554
No 181
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=43.26 E-value=68 Score=18.74 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=36.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 36 KGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
.-.|.-.+++..|...- ...+..+...+-..+|...++.||.=||-...+-
T Consensus 20 r~IVPW~~F~~~L~~~h-~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVH-PISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhc-CCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 46688999999999865 4444566677778889889999998777655543
No 182
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=42.30 E-value=61 Score=18.77 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
|+.++++.+.+... ..+++++.+.+..
T Consensus 1 i~~~~v~~lA~La~-L~l~eee~~~~~~ 27 (93)
T TIGR00135 1 ISDEEVKHLAKLAR-LELSEEEAESFAG 27 (93)
T ss_pred CCHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 45677777777666 7777777665443
No 183
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=41.55 E-value=47 Score=18.11 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Q 033580 34 KVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLD 71 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~ 71 (116)
..++-++..++...+...| ..+++..+...++.++.+
T Consensus 9 ~~~~P~g~~~l~~~L~~~g-~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRG-EELSEEAVRRRLRAMERD 45 (66)
T ss_pred HcCCCCCHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHC
Confidence 3456788999999998888 888888888888888754
No 184
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=41.21 E-value=32 Score=16.00 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=12.3
Q ss_pred CCcccHHHHHHHHHhh
Q 033580 73 DGALNQMEFCVLMFRL 88 (116)
Q Consensus 73 ~g~I~~~eF~~~~~~~ 88 (116)
.|+|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5778888888887753
No 185
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=40.06 E-value=53 Score=17.74 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=18.7
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHH
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLAS 63 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~ 63 (116)
.|+.++|..+|+... ..++.++++.
T Consensus 29 ~it~~DF~~Al~~~k-pSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVK-PSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCG-GSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHH
Confidence 478888888888887 7777777654
No 186
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=37.84 E-value=80 Score=18.26 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
.|+.++++.+...+. ..+++++.+.+.+
T Consensus 2 ~i~~e~i~~la~La~-l~l~~ee~~~~~~ 29 (95)
T PRK00034 2 AITREEVKHLAKLAR-LELSEEELEKFAG 29 (95)
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 367788888777777 7788877665543
No 187
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=37.46 E-value=97 Score=18.86 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCV 83 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~ 83 (116)
.||.++++.+|...| ..+.+..+..+++.+.. ++.++.+.
T Consensus 16 ~it~e~I~~IL~AAG-veVee~~~k~~v~aL~G-----kdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAG-VEVDEARVKALVAALED-----VNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 799999999999999 99999988888888753 55666654
No 188
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.35 E-value=86 Score=18.22 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 35 VKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
..|.+|.++...+-. .+...+....++..+.. -|.-.|..|+.++....
T Consensus 31 ~~gvlt~~~~~~I~~----~~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 31 QKDILTDSMAESIMA----KPTSFSQNVALLNLLPK--RGPRAFSAFCEALRETS 79 (90)
T ss_pred HcCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhcC
Confidence 368899888766553 33456777888887775 46678999999998643
No 189
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=37.16 E-value=73 Score=20.58 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEF 81 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF 81 (116)
....++.++.... ..|.+...++...| + ++...+.++++.+.. .|.|+|..+
T Consensus 8 ~edYL~~Iy~l~~--~~~~~~~~diA~~L---~---Vsp~sVt~ml~rL~~--~GlV~~~~y 59 (154)
T COG1321 8 EEDYLETIYELLE--EKGFARTKDIAERL---K---VSPPSVTEMLKRLER--LGLVEYEPY 59 (154)
T ss_pred HHHHHHHHHHHHh--ccCcccHHHHHHHh---C---CCcHHHHHHHHHHHH--CCCeEEecC
Confidence 3456677777664 78999999888776 3 555677777777764 466666544
No 190
>PF15565 Imm16: Immunity protein 16
Probab=37.12 E-value=98 Score=18.82 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHH-HHHHHHHHHHHhh
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQ-LWLREALNEELNN 110 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 110 (116)
.+.+-+..++..+. ..-..+-...++.-.... .-++++..+....|.++..+. -|..-...+.++.
T Consensus 29 ~d~~~I~~L~~~F~-D~~d~eVmf~lvh~lE~~-----~~~~~l~~l~~~~p~m~~~A~keWa~il~~RilNs 95 (106)
T PF15565_consen 29 PDNDVIDDLCLIFD-DETDHEVMFSLVHFLEHF-----DMEEYLPALAEAIPQMMINAPKEWAKILHYRILNS 95 (106)
T ss_pred CCHhHHHHHHHHhc-CccchHHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 44455556666555 442222223344433321 226778888888889988885 8888888777754
No 191
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=37.09 E-value=1.1e+02 Score=20.98 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=9.3
Q ss_pred cCCCCcccHH-HHHHHHHHcC
Q 033580 33 DKVKGVITTE-SLKLNAAVLG 52 (116)
Q Consensus 33 ~~~~G~i~~~-el~~~l~~~~ 52 (116)
.--++.||.. .+..++..++
T Consensus 38 ~vls~tiS~rd~~g~mf~~i~ 58 (220)
T COG4359 38 GVLSKTISFRDGFGRMFGSIH 58 (220)
T ss_pred HHhhCceeHHHHHHHHHHhcC
Confidence 3345555532 2455555444
No 192
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=36.62 E-value=50 Score=19.06 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 45 KLNAAV-LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 45 ~~~l~~-~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
..||+. -| -.++++-.+.+-+.++......|+|+|.|.+...
T Consensus 35 ~~WLskeRg-G~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 35 ATWLSKERG-GQIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred HHHHHHhhC-CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467776 34 4566666666666666555667999999988764
No 193
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=32.76 E-value=1e+02 Score=17.85 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=37.8
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhh
Q 033580 34 KVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQL 92 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 92 (116)
-+.|.++.++...+..... .......+..++..+... |.=.|..|+..+....|.+
T Consensus 26 ~q~~VLt~~d~EeI~~~~t-~~~r~~ka~~LLdiL~~r--G~~Af~~F~~aL~~~yp~L 81 (86)
T cd08785 26 RQCKVLDEQDEEEVLSSPR-LPIRANRTGRLLDILATR--GKRGYVAFLESLEFYYPEL 81 (86)
T ss_pred HhcCCCCHHHHHHHhCCCc-cccHHHHHHHHHHHHHhc--CcchHHHHHHHHHHhCHHH
Confidence 3477888888888775433 232446777788777754 5556888888887555544
No 194
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=32.37 E-value=96 Score=18.88 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHhc
Q 033580 56 LTDDKLASMVKEG 68 (116)
Q Consensus 56 ~~~~~~~~l~~~~ 68 (116)
-+.+++..++...
T Consensus 79 ~~~dElrai~~~~ 91 (112)
T PRK14981 79 ETRDELRAIFAKE 91 (112)
T ss_pred CCHHHHHHHHHHh
Confidence 3445555555444
No 195
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=32.01 E-value=95 Score=17.12 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHHHHHc----CCCCCCHHHHHHHHHhc
Q 033580 22 NELCNGFQLLMDKVKGVITTESLKLNAAVL----GLQDLTDDKLASMVKEG 68 (116)
Q Consensus 22 ~~~~~~F~~~D~~~~G~i~~~el~~~l~~~----~~~~~~~~~~~~l~~~~ 68 (116)
..+..+...++....--+-..+|+.++..+ | ...+++-++++|+.+
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG-~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITG-EVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCT-SS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHhh
Confidence 345555555554544555677777777764 6 566777788888765
No 196
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=31.95 E-value=75 Score=15.92 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033580 41 TESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVL 84 (116)
Q Consensus 41 ~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~ 84 (116)
.+|...+|..+| .+..++...+..... ...++.++.++.
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 356778888888 677888888877753 233556665544
No 197
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=30.77 E-value=1.5e+02 Score=18.96 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHh----------cCCCCCCcccHHHHHHH
Q 033580 44 LKLNAAVLGLQDLTDDKLASMVKE----------GDLDGDGALNQMEFCVL 84 (116)
Q Consensus 44 l~~~l~~~~~~~~~~~~~~~l~~~----------~d~~~~g~I~~~eF~~~ 84 (116)
+..-+.++| ..++++++..++.. +-.+.+|..|-..+.++
T Consensus 95 l~~e~eklG-i~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 95 LEQEFEKLG-ITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHhC-CccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 455566788 88888888887721 12245777777666543
No 198
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=30.48 E-value=1.2e+02 Score=17.88 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033580 36 KGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGAL 76 (116)
Q Consensus 36 ~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I 76 (116)
.|.++.+| +++..+ ++.+|++.+...++..+...+
T Consensus 47 ~Glis~~E---A~~rY~---Ls~eEf~~W~~av~rhge~aL 81 (90)
T PF06627_consen 47 GGLISVEE---ACRRYG---LSEEEFESWQRAVDRHGENAL 81 (90)
T ss_dssp CTTS-HHH---HHHCTT---SSHHHHHHHHHHCCT--TTSS
T ss_pred cCCCCHHH---HHHHhC---CCHHHHHHHHHHHHHHhHHHH
Confidence 57777764 455555 888999999888887655443
No 199
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.36 E-value=1.1e+02 Score=17.53 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=36.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChh
Q 033580 35 VKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQ 91 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~ 91 (116)
++|.++.++...+-. .....+.+..++..+... |.=.|..|+.++......
T Consensus 27 ~~~Vlt~~~~e~I~~----~~tr~~q~~~LLd~L~~R--G~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 27 SRGVFTPDMIEEIQA----AGSRRDQARQLLIDLETR--GKQAFPAFLSALRETGQT 77 (84)
T ss_pred hcCCCCHHHHHHHHc----CCCHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCch
Confidence 477888887766553 234567778888887754 667899999999875433
No 200
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=30.35 E-value=1.3e+02 Score=22.28 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=50.3
Q ss_pred ChHHHHHHHHhhcCCCChHHHHHHHHHhh--ccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q 033580 3 DFEDLLPVMADKLGGEGLINELCNGFQLL--MDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQME 80 (116)
Q Consensus 3 ~f~eFl~~~~~~~~~~~~~~~~~~~F~~~--D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~e 80 (116)
||++.-.+......-....+++..+..-+ |.|+...+--+++......+. ...-..-++-+...+...=+|.+=|.|
T Consensus 22 DF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~-~~~r~~FidFLerSctaEFSGflLYKE 100 (357)
T PLN02508 22 DFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQ-GPLRQIFIEFLERSCTAEFSGFLLYKE 100 (357)
T ss_pred cHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCC-HHHHHHHHHHHHhhhhhhcccchHHHH
Confidence 45555444444444344556666666665 677777787777776554333 222223344455556656677777777
Q ss_pred HHHHHHhhChhh
Q 033580 81 FCVLMFRLSPQL 92 (116)
Q Consensus 81 F~~~~~~~~~~~ 92 (116)
...-++...|.+
T Consensus 101 l~rrlk~~nP~l 112 (357)
T PLN02508 101 LGRRLKKTNPVV 112 (357)
T ss_pred HHHhcccCChHH
Confidence 766665544443
No 201
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=29.91 E-value=1.3e+02 Score=20.99 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=31.3
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 33 DKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 33 ~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
-+++|.+....|...+.++. .+++..|+..+-+.+.
T Consensus 162 G~gegQVpL~kL~~~l~KLp-~~lt~~ev~~v~~RL~ 197 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLP-RNLTKAEVDAVNKRLR 197 (224)
T ss_pred cCCCCceeHHHHHHHHHhCC-ccCCHHHHHHHHHHHH
Confidence 57899999999999999999 8999999988876543
No 202
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=28.94 E-value=24 Score=22.18 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHhhccCCCCcccHH-HHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHH-HHHHHHhhChhhHHH
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTE-SLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQME-FCVLMFRLSPQLMEE 95 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~-el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~e-F~~~~~~~~~~~~~~ 95 (116)
..+.+++-..|.+.-..++|..... +-...|...+ ..+-..-++.+++.+......-|.|.. |-+...+..+....+
T Consensus 18 ~~PyqqipfQ~Slhi~~~~g~~~~~~~h~efL~~~~-~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~ela~~~p~ 96 (130)
T PF11074_consen 18 TRPYQQIPFQFSLHITDNDGIIYKELEHVEFLADPG-EDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKELAELFPD 96 (130)
T ss_pred CccccccceEEEEEEEcCCCcccCchhhHHHhccCC-CCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHHHHHHhHH
Confidence 3344455555666666677732222 2223444445 455566777888877754333466655 665555444444444
Q ss_pred HHHHHHHHHH
Q 033580 96 SQLWLREALN 105 (116)
Q Consensus 96 ~~~~~~~~~~ 105 (116)
-..++.....
T Consensus 97 ~~~~l~~I~~ 106 (130)
T PF11074_consen 97 YAEKLNSIIE 106 (130)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 203
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=28.61 E-value=1.3e+02 Score=17.73 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 35 VKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+.|.+|.++...+-. .+.+.+.+..++..+.. -|.-.|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~a----~~T~~~k~~~LLdiLp~--RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES----QTTSRRKTMKLLDILPS--RGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc----cCChHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 478899888776653 33466778888888775 466789999999974
No 204
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=28.57 E-value=2e+02 Score=22.56 Aligned_cols=89 Identities=22% Similarity=0.324 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCC----------CCHHHHHHHHH---------------------
Q 033580 18 EGLINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQD----------LTDDKLASMVK--------------------- 66 (116)
Q Consensus 18 ~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~----------~~~~~~~~l~~--------------------- 66 (116)
..+...+.-+|+..|.++-=.|+..+|+.++..++ .+ ++..-+-.+.+
T Consensus 124 dtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~-e~~~e~~~~yG~is~aS~gaI~R~ll~LE~qG~d~FFGEPaldi 202 (502)
T PF05872_consen 124 DTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS-ENAKELSAEYGNISSASIGAIQRALLVLEQQGGDQFFGEPALDI 202 (502)
T ss_pred hHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH-hhHHHHHHHcCCccHHHHHHHHHHHHHHHHcchHhhCCCccCCH
Confidence 44556788999999999888999999999998764 32 22222222211
Q ss_pred ----hcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHh
Q 033580 67 ----EGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELN 109 (116)
Q Consensus 67 ----~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (116)
+.+.++.|.|+.=+--.++. .|.+-..-.-||---+++.|-
T Consensus 203 ~Dl~r~~~~GrG~IniL~a~~l~~--~P~LysTFLLwLLsELfe~LP 247 (502)
T PF05872_consen 203 EDLMRTDADGRGVINILAADKLMN--SPKLYSTFLLWLLSELFEQLP 247 (502)
T ss_pred HHHhccCCCCCEEEEEEEhHhhhh--CcHHHHHHHHHHHHHHHHhCc
Confidence 23445556666655555544 466666666777777776663
No 205
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=28.43 E-value=1.2e+02 Score=20.50 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCC
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGD 73 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~ 73 (116)
-..+|+..+++..| +++++.+++.+.+..+++
T Consensus 80 ~e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 80 EEKEELVEIYRAKG---LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred hHHHHHHHHHHHCC---CCHHHHHHHHHHHHhCch
Confidence 34558888888777 777777777777666544
No 206
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=27.66 E-value=93 Score=17.85 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 43 SLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 43 el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
|+-.+|+++| .++++++..-+-.
T Consensus 21 EIL~ALrkLg-e~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLG-EKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHH
Confidence 4567899999 9999988665443
No 207
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=27.65 E-value=98 Score=20.00 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
.+..-....|..+.+|+|..+|+.++-.+
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34444555677888899999999877653
No 208
>PLN02228 Phosphoinositide phospholipase C
Probab=27.60 E-value=2.1e+02 Score=22.82 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=36.3
Q ss_pred cChHHHHHHHHhhcCCC-ChHHHHHHHHHhhccC----CCCcccHHHHHHHHHH
Q 033580 2 VDFEDLLPVMADKLGGE-GLINELCNGFQLLMDK----VKGVITTESLKLNAAV 50 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~----~~G~i~~~el~~~l~~ 50 (116)
++.++|..++....+.. ...+....+|..+... ..|.++.+.|...|..
T Consensus 39 ~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 39 MSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred cCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 78899999998877643 3456678888888543 3577999999887754
No 209
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=27.57 E-value=1.8e+02 Score=18.99 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCHHHHH---HHHHhcCC
Q 033580 34 KVKGVITTESLKLNAAVLGLQDLTDDKLA---SMVKEGDL 70 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~---~l~~~~d~ 70 (116)
++...|+..+...+++.+| +++..+. ..|....+
T Consensus 111 ~~~~~V~~~~w~~l~~~~g---~~~~~m~~wh~~fe~~~p 147 (172)
T cd04790 111 KEQRLVTKEKWVAILKAAG---MDEADMRRWHIEFEKMEP 147 (172)
T ss_pred cccccCCHHHHHHHHHHcC---CChHHHHHHHHHHHHhCc
Confidence 4566788888888898888 4444444 44444444
No 210
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=26.99 E-value=76 Score=23.22 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCcccHHHHHHHHHhhChhhHH---------HHHHHHHHHHH
Q 033580 73 DGALNQMEFCVLMFRLSPQLME---------ESQLWLREALN 105 (116)
Q Consensus 73 ~g~I~~~eF~~~~~~~~~~~~~---------~~~~~~~~~~~ 105 (116)
-|.|+|++|...++...|...+ +...|+++++.
T Consensus 268 ~~~~~w~~~~~~~~~~gp~~~~~~~~~~~~~~~~~wvr~~~~ 309 (314)
T PRK13778 268 FGEIDWDEFKEVIKGNGPCNRERLAARRKAHEDGAWVREAAL 309 (314)
T ss_pred CCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHcchHHHHHHH
Confidence 4779999999999987665443 34456666553
No 211
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.84 E-value=46 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=17.4
Q ss_pred HHhcCCCCCCcccHHHHHHHHHh
Q 033580 65 VKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 65 ~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
...+..+..|..+|++||..+.+
T Consensus 78 ~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 78 KTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHhcCCccHHHHHHHHHh
Confidence 33445566899999999998875
No 212
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=26.76 E-value=1.2e+02 Score=16.75 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhc
Q 033580 75 ALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNNA 111 (116)
Q Consensus 75 ~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (116)
..+|++++..+.............+...+++..+-.+
T Consensus 19 ~~s~~~~~~~l~~~~~~~~~~~~~l~~~~~fn~ligN 55 (79)
T PF07804_consen 19 KPSYEDLAQALRQYSSDPAADVRELFRRLVFNYLIGN 55 (79)
T ss_dssp C-BHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHCTB
T ss_pred CcCHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHcC
Confidence 4889999988887776656777777888887777443
No 213
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.29 E-value=2.5e+02 Score=20.07 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHH--hcCCCCCCcccHHHHHHHHHhhChhhHH
Q 033580 19 GLINELCNGFQLL-MDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVK--EGDLDGDGALNQMEFCVLMFRLSPQLME 94 (116)
Q Consensus 19 ~~~~~~~~~F~~~-D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~--~~d~~~~g~I~~~eF~~~~~~~~~~~~~ 94 (116)
.....+.+.|..+ |+..+..|..+.+...+..+| ..+ +.+..++- .+....-+..+.++|+.-+........+
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg-~~p--~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d 136 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLG-VEP--EDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSID 136 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhC-CCc--hhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHH
Confidence 3445667777776 566667999999999999999 444 44444332 2334456779999999988876655444
No 214
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=26.28 E-value=1.8e+02 Score=18.54 Aligned_cols=41 Identities=7% Similarity=-0.199 Sum_probs=27.0
Q ss_pred CCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhcC
Q 033580 72 GDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNNAG 112 (116)
Q Consensus 72 ~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (116)
.....+.++|+.-+........+...--.+.++++.|.+..
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~r~I 112 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLKRHI 112 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 45568888998888776555444444455667777776544
No 215
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=26.26 E-value=1.1e+02 Score=15.98 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 35 VKGVITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
.+|.|+..||..=+...- ...+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~-~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAY-AARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHc
Confidence 489999999987776654 4556666666554
No 216
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=26.15 E-value=2.3e+02 Score=19.69 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=36.2
Q ss_pred CCCcccHHHHHHHHHH-cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhh
Q 033580 35 VKGVITTESLKLNAAV-LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSPQLMEESQLWLREALNEELNN 110 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~-~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (116)
....|+..+++.-|.. +| ..-...++..+-..+. |+|+.+||-..+........ ..++...+...|.+
T Consensus 5 ~~~Ridl~~lk~~l~~~LG-~~~~~~Y~~~l~~fl~----~klsk~Efd~~~~~~L~~~~---~~LHN~li~sIl~n 73 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLG-PDRWKKYFQSLKRFLS----GKLSKEEFDKECRRILGREN---VHLHNQLILSILKN 73 (252)
T ss_pred cccccCHHHHHHHHHHHHC-hHHHHHHHHHHHHHHH----hccCHHHHHHHHHHHhChhH---HHHHHHHHHHHHHH
Confidence 3566777777766655 55 3333333333333333 77888888887776543221 33444444444433
No 217
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=26.07 E-value=1.4e+02 Score=17.23 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 56 LTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 56 ~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
+++.+...+-..++.-..|.|+.++|+..+..
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~e 47 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFE 47 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56777777776676667788999999998885
No 218
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=25.80 E-value=1.6e+02 Score=17.70 Aligned_cols=46 Identities=9% Similarity=-0.055 Sum_probs=35.1
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033580 34 KVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLM 85 (116)
Q Consensus 34 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~ 85 (116)
+..-.+|.+++..++...| ..+.......+.+.+.. .+.++++.-.
T Consensus 13 d~~~~~Tae~I~~ilkAaG-veve~~~~~~f~~~L~g-----k~i~elIa~~ 58 (103)
T cd05831 13 DDGIEITADNINALLKAAG-VNVEPYWPGLFAKALEG-----KDIKDLLSNV 58 (103)
T ss_pred cCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcC-----CCHHHHhhcc
Confidence 4455799999999999999 88888877777777752 5667776544
No 219
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.64 E-value=68 Score=21.41 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
-+.++++|.-||...=-..+.+++.+++...+ +-.+...+..++.
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~-IIRnr~KI~Avi~ 96 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDG-IIRNRGKIEATIA 96 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCcc-chhhHHHHHHHHH
Confidence 35789999999999988899999999998877 6556666655544
No 220
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=25.57 E-value=1.7e+02 Score=17.94 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFR 87 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~ 87 (116)
.|+.+.++.++...| ..+.+..+..++..+.. ++.++.+.-...
T Consensus 16 ei~e~~l~~vl~aaG-veve~~r~k~lvaaLeg-----~~idE~i~~~~~ 59 (109)
T COG2058 16 EITEDNLKSVLEAAG-VEVEEARAKALVAALEG-----VDIDEVIKNAAE 59 (109)
T ss_pred cCCHHHHHHHHHHcC-CCccHHHHHHHHHHhcC-----CCHHHHHHHhcc
Confidence 899999999999999 99999999999988873 467776655443
No 221
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=25.34 E-value=88 Score=14.61 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=12.5
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 033580 38 VITTESLKLNAAVLGLQDL 56 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~ 56 (116)
.++..||+..++..| .+.
T Consensus 3 ~l~v~eLk~~l~~~g-L~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERG-LST 20 (35)
T ss_dssp TSHHHHHHHHHHHTT-S-S
T ss_pred cCcHHHHHHHHHHCC-CCC
Confidence 356778888888877 544
No 222
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.30 E-value=1.2e+02 Score=16.24 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHhh--ccCCCCcccHHHHHHHHHH
Q 033580 19 GLINELCNGFQLL--MDKVKGVITTESLKLNAAV 50 (116)
Q Consensus 19 ~~~~~~~~~F~~~--D~~~~G~i~~~el~~~l~~ 50 (116)
-+.+++....+.| ++ ....++.++|+..|..
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~ 44 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDR 44 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHH
Confidence 4556666666666 22 3334566666666654
No 223
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=1.7e+02 Score=20.15 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=32.0
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCC
Q 033580 33 DKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDL 70 (116)
Q Consensus 33 ~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~ 70 (116)
.|.+|....+++...++..+ ..++.+.+..+.+.-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~-~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAG-RWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhc-cCCCHHHHHHHHhcCCC
Confidence 57899999999999999999 89999988888876554
No 224
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=25.11 E-value=1.5e+02 Score=17.21 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=4.5
Q ss_pred ccHHHHHHH
Q 033580 76 LNQMEFCVL 84 (116)
Q Consensus 76 I~~~eF~~~ 84 (116)
|++++|..+
T Consensus 77 it~~e~~~a 85 (87)
T PF13331_consen 77 ITREEFEEA 85 (87)
T ss_pred CCHHHHHHH
Confidence 555555444
No 225
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=24.76 E-value=1.2e+02 Score=16.05 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 033580 20 LINELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQ 78 (116)
Q Consensus 20 ~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~ 78 (116)
.+.-++.+|.... ..+.++..++.+.| + ++..-+-++++.+.. .|.|.+
T Consensus 6 ~e~YL~~Iy~l~~--~~~~v~~~~iA~~L---~---vs~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 6 EEDYLKAIYELSE--EGGPVRTKDIAERL---G---VSPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp HHHHHHHHHHHHH--CTSSBBHHHHHHHH---T---S-HHHHHHHHHHHHH--TTSEEE
T ss_pred HHHHHHHHHHHHc--CCCCccHHHHHHHH---C---CChHHHHHHHHHHHH--CCCEEe
Confidence 4556788888875 78889999888776 3 677778888887763 355544
No 226
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=24.43 E-value=2.5e+02 Score=22.45 Aligned_cols=50 Identities=12% Similarity=-0.094 Sum_probs=33.5
Q ss_pred cChHHHHHHHHhhcCC--CChHHHHHHHHHhhccCCCCcccHHHHHHHHHHc
Q 033580 2 VDFEDLLPVMADKLGG--EGLINELCNGFQLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~--~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
|+..+...++.+.-.. --..++++.+....+.+.+|.|+.++|..++..+
T Consensus 35 v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 35 VTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred eehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4555666655543221 1124677888888889999999999988766544
No 227
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=23.93 E-value=1.7e+02 Score=17.33 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=18.2
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
.|+.++++++.+... ..+++++.+.+..
T Consensus 2 ~i~~e~v~~la~Lar-L~lseee~e~~~~ 29 (96)
T COG0721 2 AIDREEVKHLAKLAR-LELSEEELEKFAT 29 (96)
T ss_pred ccCHHHHHHHHHHhh-cccCHHHHHHHHH
Confidence 467777777776666 6677776665443
No 228
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=23.90 E-value=1.9e+02 Score=22.91 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Q 033580 26 NGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLD 71 (116)
Q Consensus 26 ~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~ 71 (116)
.+-...+..+.|.++.+|..+.|..+. ..-....+++++++...+
T Consensus 459 Dl~~~verag~~~~~~ee~e~~l~dI~-y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 459 DLLATVERAGRGELEEEEIEQFLADIA-YRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHhccCcccCCHHHHHHHHHHhc-ccccCCCHHHHHHHhhcc
Confidence 344455677888899999999999888 666666677787766543
No 229
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=23.75 E-value=1.6e+02 Score=16.94 Aligned_cols=45 Identities=4% Similarity=-0.029 Sum_probs=30.9
Q ss_pred cHHHHHHHHHH----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033580 40 TTESLKLNAAV----LGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMF 86 (116)
Q Consensus 40 ~~~el~~~l~~----~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~ 86 (116)
+...++++++. ++ .+++.+..+.+++..-.++- ..++.....++.
T Consensus 29 dE~~vR~lIk~vs~~an-~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIAN-KPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred cHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 44556666655 57 78888888888887765544 677777766654
No 230
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=23.62 E-value=4.3e+02 Score=21.90 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=42.4
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCh
Q 033580 23 ELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMFRLSP 90 (116)
Q Consensus 23 ~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~~ 90 (116)
.-+.+|+...+.+.-++..+++. .-+.+++++..+..++...+..|+++.|+..+.....
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~--------~f~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLL--------RFMGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhh--------hcCCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 44567777666665566666553 3346788888888888766666999999988876544
No 231
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.60 E-value=1.2e+02 Score=18.77 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=23.0
Q ss_pred CcChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 033580 1 MVDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKLNAA 49 (116)
Q Consensus 1 ~i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~~l~ 49 (116)
+|+..|-..++.......+.....+.+...+ ++-++++++..+.+..
T Consensus 12 yiti~Eak~il~~~~~~~eL~y~~~~al~y~--~kFakldpe~a~e~ve 58 (114)
T COG1460 12 YITISEAKKILSKVEREEELTYEQREALEYA--EKFAKLDPEKARELVE 58 (114)
T ss_pred CccHHHHHHHHHHhcccccchHHHHHHHHHH--HHHhcCCHHHHHHHHH
Confidence 4666676677766543333333444444433 3334455555444443
No 232
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=23.14 E-value=61 Score=21.82 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 21 INELCNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 21 ~~~~~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
-+.++.+|.-||...=-..+.+++.+++...+ +-.+...++.++.
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~-IIRnr~KI~Avi~ 97 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAG-IIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch-hHHhHHHHHHHHH
Confidence 35799999999999888889999999998777 5555555555443
No 233
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.86 E-value=99 Score=14.30 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 033580 38 VITTESLKLNAAVLGLQDL 56 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~ 56 (116)
.++..+|+..++..| .+.
T Consensus 3 ~l~~~~Lk~~l~~~g-l~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRG-LST 20 (35)
T ss_pred cCcHHHHHHHHHHcC-CCC
Confidence 466788888888877 544
No 234
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=22.84 E-value=52 Score=18.71 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=16.8
Q ss_pred HhhccCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 29 QLLMDKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 29 ~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
..+-.+..++++..+.+..+. + .....+..++..+.
T Consensus 44 ~~w~~n~~~~lt~~~~~~~i~--~---~d~~~~~ri~~FL~ 79 (86)
T PF04433_consen 44 AEWRKNPNKYLTKTDARKLIK--G---IDVNKIRRIYDFLE 79 (86)
T ss_dssp HHHHHHTTS---HHHHHHHTT--S---SSHHHHHHHHHHHH
T ss_pred HHHHHCCCCcccHHHHHHHcc--c---cCHHHHHHHHHHHH
Confidence 333455666666666655553 2 34445555555444
No 235
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.47 E-value=91 Score=17.05 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=14.6
Q ss_pred CCcccHHHHHHHHHhhChhh
Q 033580 73 DGALNQMEFCVLMFRLSPQL 92 (116)
Q Consensus 73 ~g~I~~~eF~~~~~~~~~~~ 92 (116)
.|.|+++.|+..+..+..+.
T Consensus 37 ~g~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp TTSS-HHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 57799999999988765543
No 236
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=22.16 E-value=1.4e+02 Score=25.21 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=30.6
Q ss_pred cChHHHHHHHHhhcCCCChHHHHHHHHHhhccCCCCcccHHHHHH
Q 033580 2 VDFEDLLPVMADKLGGEGLINELCNGFQLLMDKVKGVITTESLKL 46 (116)
Q Consensus 2 i~f~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~el~~ 46 (116)
++|.+|...|.+..-..+...++..+|+.+-+++. ++..++|..
T Consensus 805 v~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 805 VQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred eeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 56777777777766666667777777877766655 677776654
No 237
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=22.11 E-value=1.9e+02 Score=17.43 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLMF 86 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~~ 86 (116)
.||.+.+..+|...| ..+....+..+.+.+.. .+.++.+.-..
T Consensus 16 ~iT~e~I~~IL~AAG-v~ve~~~~~~la~~L~g-----k~i~eli~~~~ 58 (105)
T TIGR03685 16 EINEENLKAVLEAAG-VEVDEARVKALVAALEG-----VNIEEAIKKAA 58 (105)
T ss_pred CCCHHHHHHHHHHhC-CcccHHHHHHHHHHHcC-----CCHHHHHHhhh
Confidence 799999999999999 88988888888888853 45566554333
No 238
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=21.95 E-value=2.2e+02 Score=17.92 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHHHHHcC--------CCCCCHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 033580 35 VKGVITTESLKLNAAVLG--------LQDLTDDKLASMVKEGDLDGDG-ALNQMEFCVL 84 (116)
Q Consensus 35 ~~G~i~~~el~~~l~~~~--------~~~~~~~~~~~l~~~~d~~~~g-~I~~~eF~~~ 84 (116)
++..||.+||.+++..-. |..++.+++..+.+.+...+.+ .++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 456677777777776532 0124667777777766654444 3776665543
No 239
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=21.67 E-value=1.8e+02 Score=16.97 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhcCCCC-CCcccH-HHHHHHHHhhChhhHH--HHHHHHHHHHHHHHhh
Q 033580 54 QDLTDDKLASMVKEGDLDG-DGALNQ-MEFCVLMFRLSPQLME--ESQLWLREALNEELNN 110 (116)
Q Consensus 54 ~~~~~~~~~~l~~~~d~~~-~g~I~~-~eF~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 110 (116)
..+....+..+...+.... ..+|.| .++..+++....+... +.+..+..++...+|.
T Consensus 19 ~Wi~~~~i~~l~~~~~~~d~e~qI~Flrel~~l~r~~Pv~vF~D~EqR~~vL~a~Q~alD~ 79 (87)
T PF09059_consen 19 RWIGPSQIERLAEALGLPDIEQQILFLRELKELFRLMPVDVFNDEEQRQNVLDAVQEALDQ 79 (87)
T ss_dssp TT--HHHHHHHHHCT--SSHHHHHHHHHHHHHHHHTS-GGGSS-HHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3456666666766665543 445555 6777777766544322 3344455555555544
No 240
>PTZ00315 2'-phosphotransferase; Provisional
Probab=21.17 E-value=2.2e+02 Score=22.79 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=30.3
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCCHHHHHHHHHhcC
Q 033580 33 DKVKGVITTESLKLNAAVLGLQDLTDDKLASMVKEGD 69 (116)
Q Consensus 33 ~~~~G~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d 69 (116)
-+.+|++..++|....+..+ ..++.+.+.++++.=+
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~-~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRN-DPVSVQDVARVVRDSD 435 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcC-CCCCHHHHHHHHHcCC
Confidence 57899999999999888777 7789999999987533
No 241
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=20.68 E-value=1.8e+02 Score=18.97 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033580 60 KLASMVKEGDLDGDGALNQMEFCVLMFRLS 89 (116)
Q Consensus 60 ~~~~l~~~~d~~~~g~I~~~eF~~~~~~~~ 89 (116)
.++.++..-+.+.++.|++..|..+++...
T Consensus 84 ~Lehllg~~~~~~n~~i~~~~ff~~lQ~~l 113 (175)
T PF04876_consen 84 FLEHLLGGEDDSTNGLIDIGKFFDILQPKL 113 (175)
T ss_pred HHHHHhcCCcCCcccceeHHHHHHHHHHHh
Confidence 344444443434567899999999998754
No 242
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=20.45 E-value=1.3e+02 Score=14.79 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=7.4
Q ss_pred CcccHHHHHHHHHH
Q 033580 37 GVITTESLKLNAAV 50 (116)
Q Consensus 37 G~i~~~el~~~l~~ 50 (116)
+.++..++...+..
T Consensus 17 ~~~~~~~v~~~v~~ 30 (47)
T PF02671_consen 17 GRISRSEVIEEVSE 30 (47)
T ss_dssp TCSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 55555555554444
No 243
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=20.43 E-value=86 Score=25.61 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCCCCHHH---------HHHHHHhcCCCCC----------------------
Q 033580 25 CNGFQLLMDKVKGVITTESLKLNAAVLGLQDLTDDK---------LASMVKEGDLDGD---------------------- 73 (116)
Q Consensus 25 ~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~---------~~~l~~~~d~~~~---------------------- 73 (116)
+.++..+|-+.+++++..++......++ ..+-..+ -..+++.+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~-~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFG-NVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHH-HHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 5677788888899998888776666554 3221111 2345566677777
Q ss_pred -CcccHHHHHHHHHhhChhhHH
Q 033580 74 -GALNQMEFCVLMFRLSPQLME 94 (116)
Q Consensus 74 -g~I~~~eF~~~~~~~~~~~~~ 94 (116)
|.+..++-+.++....-.++.
T Consensus 519 ~~~vtVDe~v~ll~~~i~~V~~ 540 (975)
T KOG2419|consen 519 FGVVTVDELVALLALDIIQVML 540 (975)
T ss_pred cCeeEHHHHHHHHHHHHHHHHH
Confidence 889999988887765444444
No 244
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.27 E-value=1.9e+02 Score=16.53 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 033580 39 ITTESLKLNAAVLGLQDLTDDKLASMVK 66 (116)
Q Consensus 39 i~~~el~~~l~~~~~~~~~~~~~~~l~~ 66 (116)
++..+.+++.+.+| +++.+++.+-.
T Consensus 9 v~~~~wk~~~R~LG---lse~~Id~ie~ 33 (80)
T cd08313 9 VPPRRWKEFVRRLG---LSDNEIERVEL 33 (80)
T ss_pred CCHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 56777888888888 77777776543
No 245
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=20.25 E-value=94 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.0
Q ss_pred HhhccCCCCcccHHHHHHHHHHc
Q 033580 29 QLLMDKVKGVITTESLKLNAAVL 51 (116)
Q Consensus 29 ~~~D~~~~G~i~~~el~~~l~~~ 51 (116)
.-+|.+++|.++.+++..+....
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHH
Confidence 35789999999999998877654
No 246
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=20.04 E-value=2.2e+02 Score=17.30 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033580 38 VITTESLKLNAAVLGLQDLTDDKLASMVKEGDLDGDGALNQMEFCVLM 85 (116)
Q Consensus 38 ~i~~~el~~~l~~~~~~~~~~~~~~~l~~~~d~~~~g~I~~~eF~~~~ 85 (116)
.||.+.+..+|...| ..+.+..+..+...+.. .+.++.+.-.
T Consensus 16 eITae~I~~IL~AAG-veVd~~~~~ala~aL~g-----kdIeElIa~~ 57 (106)
T cd05832 16 EINEENLKKVLEAAG-IEVDEARVKALVAALEE-----VNIDEAIKKA 57 (106)
T ss_pred CCCHHHHHHHHHHhC-CcccHHHHHHHHHHHcC-----CCHHHHHHhc
Confidence 799999999999999 98988888888888863 5566665443
Done!