Query 033583
Match_columns 116
No_of_seqs 101 out of 1084
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 03:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.3E-24 2.9E-29 126.0 13.0 112 2-116 12-123 (160)
2 KOG0027 Calmodulin and related 99.9 9.6E-23 2.1E-27 119.4 13.0 113 4-116 2-116 (151)
3 KOG0030 Myosin essential light 99.9 6.9E-21 1.5E-25 106.6 10.6 115 2-116 3-119 (152)
4 KOG0028 Ca2+-binding protein ( 99.8 5.2E-19 1.1E-23 101.3 11.9 113 2-116 25-137 (172)
5 PTZ00183 centrin; Provisional 99.8 9.7E-19 2.1E-23 102.9 13.3 111 3-115 10-120 (158)
6 PTZ00184 calmodulin; Provision 99.8 1.3E-18 2.9E-23 101.2 13.2 112 2-115 3-114 (149)
7 KOG0031 Myosin regulatory ligh 99.8 1.6E-17 3.4E-22 94.7 11.6 108 3-116 25-132 (171)
8 PLN02964 phosphatidylserine de 99.6 4.5E-15 9.8E-20 102.6 11.6 105 2-113 135-243 (644)
9 KOG0034 Ca2+/calmodulin-depend 99.6 6.1E-15 1.3E-19 88.4 9.9 106 3-114 26-133 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.6 6.2E-14 1.4E-18 84.2 10.8 107 3-114 22-129 (193)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.6 4.5E-14 9.8E-19 84.8 9.8 103 11-113 65-175 (193)
12 KOG0037 Ca2+-binding protein, 99.5 2.6E-13 5.6E-18 81.8 11.0 98 9-115 56-154 (221)
13 KOG0027 Calmodulin and related 99.5 6.3E-13 1.4E-17 77.9 10.7 101 10-113 44-149 (151)
14 PF13499 EF-hand_7: EF-hand do 99.5 2.1E-13 4.5E-18 69.3 7.5 61 11-71 1-65 (66)
15 PTZ00183 centrin; Provisional 99.5 1E-12 2.2E-17 77.2 11.4 100 11-113 54-154 (158)
16 KOG0037 Ca2+-binding protein, 99.5 5.5E-13 1.2E-17 80.4 10.2 93 9-110 123-217 (221)
17 cd05022 S-100A13 S-100A13: S-1 99.5 5.2E-13 1.1E-17 71.3 8.0 69 6-74 4-75 (89)
18 KOG0036 Predicted mitochondria 99.5 2.4E-12 5.1E-17 84.1 12.4 105 4-116 8-113 (463)
19 COG5126 FRQ1 Ca2+-binding prot 99.5 2.8E-12 6.1E-17 74.9 11.3 99 11-113 57-156 (160)
20 PTZ00184 calmodulin; Provision 99.5 2.7E-12 5.8E-17 74.6 11.0 99 11-112 48-147 (149)
21 cd05027 S-100B S-100B: S-100B 99.4 2.1E-12 4.6E-17 69.0 8.9 68 7-74 5-79 (88)
22 smart00027 EH Eps15 homology d 99.4 2.7E-12 5.8E-17 69.8 9.1 70 3-74 3-72 (96)
23 KOG0034 Ca2+/calmodulin-depend 99.4 1.3E-11 2.8E-16 74.2 11.2 102 12-113 68-175 (187)
24 cd00213 S-100 S-100: S-100 dom 99.4 1.3E-11 2.9E-16 66.0 8.1 69 6-74 4-79 (88)
25 cd05029 S-100A6 S-100A6: S-100 99.3 2.8E-11 6.1E-16 64.7 8.7 69 6-74 6-79 (88)
26 cd05031 S-100A10_like S-100A10 99.3 2.6E-11 5.6E-16 65.7 8.5 67 7-73 5-78 (94)
27 cd05025 S-100A1 S-100A1: S-100 99.3 4.2E-11 9.1E-16 64.6 9.1 67 8-74 7-80 (92)
28 KOG0028 Ca2+-binding protein ( 99.3 9.8E-11 2.1E-15 67.7 10.2 102 10-114 69-171 (172)
29 cd05026 S-100Z S-100Z: S-100Z 99.3 8.4E-11 1.8E-15 63.5 9.1 69 7-75 7-82 (93)
30 PF13499 EF-hand_7: EF-hand do 99.3 4.7E-11 1E-15 60.5 7.4 65 47-111 1-66 (66)
31 cd00052 EH Eps15 homology doma 99.3 8.1E-11 1.8E-15 59.6 7.5 60 13-74 2-61 (67)
32 PF13833 EF-hand_8: EF-hand do 99.2 1E-10 2.2E-15 57.0 6.7 51 23-73 1-52 (54)
33 cd00051 EFh EF-hand, calcium b 99.2 1.4E-10 3.1E-15 57.4 7.3 61 12-72 2-62 (63)
34 KOG0040 Ca2+-binding actin-bun 99.2 3.4E-10 7.4E-15 83.6 9.4 106 2-109 2245-2357(2399)
35 cd05023 S-100A11 S-100A11: S-1 99.2 9.5E-10 2.1E-14 58.9 8.8 69 6-74 5-80 (89)
36 PF14658 EF-hand_9: EF-hand do 99.2 3.4E-10 7.4E-15 56.5 6.5 60 14-73 2-63 (66)
37 cd00252 SPARC_EC SPARC_EC; ext 99.1 9E-10 1.9E-14 61.6 8.0 60 9-72 47-106 (116)
38 KOG0041 Predicted Ca2+-binding 99.1 1.3E-09 2.8E-14 65.3 8.9 104 3-107 92-197 (244)
39 KOG4223 Reticulocalbin, calume 99.0 1.2E-09 2.7E-14 69.6 7.2 105 8-112 75-190 (325)
40 cd05030 calgranulins Calgranul 99.0 3.8E-09 8.3E-14 56.5 8.0 69 6-74 4-79 (88)
41 cd05022 S-100A13 S-100A13: S-1 99.0 4.2E-09 9E-14 56.3 7.3 67 46-114 8-76 (89)
42 KOG0377 Protein serine/threoni 98.9 3E-08 6.5E-13 66.0 10.6 103 11-113 465-615 (631)
43 PF12763 EF-hand_4: Cytoskelet 98.9 8.5E-09 1.8E-13 56.6 6.8 72 1-75 1-72 (104)
44 PF00036 EF-hand_1: EF hand; 98.9 2.9E-09 6.4E-14 45.0 4.0 29 86-114 1-29 (29)
45 KOG0038 Ca2+-binding kinase in 98.9 4.1E-08 8.8E-13 56.3 8.7 105 4-114 22-137 (189)
46 cd05026 S-100Z S-100Z: S-100Z 98.9 2.4E-08 5.2E-13 53.9 7.5 69 46-114 10-82 (93)
47 cd05029 S-100A6 S-100A6: S-100 98.9 2.9E-08 6.3E-13 53.0 7.0 68 47-114 11-80 (88)
48 PLN02964 phosphatidylserine de 98.8 3.3E-08 7.2E-13 69.2 9.0 70 5-74 174-243 (644)
49 KOG4223 Reticulocalbin, calume 98.8 2E-08 4.3E-13 64.2 7.3 103 8-111 161-267 (325)
50 cd05031 S-100A10_like S-100A10 98.8 3.4E-08 7.4E-13 53.4 7.3 69 46-114 8-80 (94)
51 PF13405 EF-hand_6: EF-hand do 98.8 8.7E-09 1.9E-13 44.4 3.9 30 86-115 1-31 (31)
52 cd05025 S-100A1 S-100A1: S-100 98.8 6.6E-08 1.4E-12 52.1 7.9 69 46-114 9-81 (92)
53 PF00036 EF-hand_1: EF hand; 98.8 1.4E-08 3.1E-13 42.9 3.9 28 11-38 1-28 (29)
54 cd00213 S-100 S-100: S-100 dom 98.8 8.4E-08 1.8E-12 51.2 7.7 69 46-114 8-80 (88)
55 cd05027 S-100B S-100B: S-100B 98.8 6.6E-08 1.4E-12 51.7 7.0 69 46-114 8-80 (88)
56 KOG0038 Ca2+-binding kinase in 98.8 1.2E-07 2.5E-12 54.5 8.2 101 13-113 74-177 (189)
57 cd00252 SPARC_EC SPARC_EC; ext 98.7 1.2E-07 2.6E-12 53.1 7.1 64 42-112 44-107 (116)
58 PF13833 EF-hand_8: EF-hand do 98.7 6E-08 1.3E-12 47.0 5.2 52 60-113 2-53 (54)
59 smart00027 EH Eps15 homology d 98.7 1.7E-07 3.7E-12 50.9 7.5 64 46-114 10-73 (96)
60 cd00051 EFh EF-hand, calcium b 98.7 1.2E-07 2.5E-12 46.6 6.3 61 48-111 2-62 (63)
61 cd05024 S-100A10 S-100A10: A s 98.7 5.7E-07 1.2E-11 48.0 8.9 67 7-74 5-76 (91)
62 KOG0031 Myosin regulatory ligh 98.7 2.4E-07 5.2E-12 53.6 7.6 87 23-112 77-164 (171)
63 KOG0036 Predicted mitochondria 98.7 2.9E-07 6.3E-12 60.9 8.4 62 11-72 83-144 (463)
64 KOG2562 Protein phosphatase 2 98.6 2.1E-07 4.5E-12 62.2 7.5 103 5-113 273-379 (493)
65 PF13405 EF-hand_6: EF-hand do 98.6 9.8E-08 2.1E-12 41.0 3.9 30 11-40 1-31 (31)
66 cd00052 EH Eps15 homology doma 98.6 3.9E-07 8.6E-12 45.9 6.7 61 49-114 2-62 (67)
67 cd05023 S-100A11 S-100A11: S-1 98.6 5.8E-07 1.2E-11 48.1 7.5 69 46-114 9-81 (89)
68 cd05030 calgranulins Calgranul 98.6 1.1E-06 2.5E-11 46.9 7.8 66 47-114 9-80 (88)
69 KOG0030 Myosin essential light 98.5 7.9E-07 1.7E-11 50.6 6.6 62 10-72 88-149 (152)
70 PF13202 EF-hand_5: EF hand; P 98.5 3.1E-07 6.8E-12 37.4 3.4 25 87-111 1-25 (25)
71 KOG0046 Ca2+-binding actin-bun 98.4 2.7E-06 5.7E-11 58.0 8.3 74 2-76 11-87 (627)
72 KOG2643 Ca2+ binding protein, 98.4 2.3E-06 5.1E-11 57.1 7.5 98 15-113 323-453 (489)
73 PF14788 EF-hand_10: EF hand; 98.4 3.9E-06 8.5E-11 39.8 5.8 48 26-73 1-48 (51)
74 PRK12309 transaldolase/EF-hand 98.4 4.1E-06 8.8E-11 56.1 7.9 58 40-113 328-385 (391)
75 KOG2643 Ca2+ binding protein, 98.3 3.1E-06 6.7E-11 56.5 6.5 95 13-114 236-347 (489)
76 PRK12309 transaldolase/EF-hand 98.3 5.1E-06 1.1E-10 55.6 6.8 53 9-74 333-385 (391)
77 PF13202 EF-hand_5: EF hand; P 98.3 2.3E-06 5E-11 34.8 3.3 24 12-35 1-24 (25)
78 KOG4251 Calcium binding protei 98.3 4.9E-06 1.1E-10 52.0 6.2 66 7-72 98-166 (362)
79 KOG0377 Protein serine/threoni 98.2 7.2E-06 1.6E-10 55.1 7.1 64 11-74 548-615 (631)
80 KOG4666 Predicted phosphate ac 98.2 5.6E-06 1.2E-10 53.5 5.7 103 9-115 258-361 (412)
81 PF14658 EF-hand_9: EF-hand do 98.2 1.5E-05 3.2E-10 40.0 5.6 62 50-113 2-64 (66)
82 cd05024 S-100A10 S-100A10: A s 98.1 7.6E-05 1.7E-09 39.9 8.0 68 46-114 8-77 (91)
83 KOG0751 Mitochondrial aspartat 98.1 1.6E-05 3.4E-10 54.2 6.0 93 19-113 83-207 (694)
84 PF10591 SPARC_Ca_bdg: Secrete 98.0 3E-06 6.4E-11 47.4 1.1 63 41-108 49-111 (113)
85 KOG0169 Phosphoinositide-speci 97.9 0.0002 4.3E-09 51.1 8.8 103 5-114 131-233 (746)
86 KOG4251 Calcium binding protei 97.8 7.1E-05 1.5E-09 46.9 5.6 68 45-112 100-167 (362)
87 KOG0751 Mitochondrial aspartat 97.8 0.00081 1.8E-08 46.2 10.6 105 5-114 28-137 (694)
88 KOG1707 Predicted Ras related/ 97.8 0.00076 1.6E-08 47.2 10.4 113 3-115 188-345 (625)
89 PF14788 EF-hand_10: EF hand; 97.7 0.00025 5.4E-09 33.7 5.4 49 63-114 2-50 (51)
90 PF05042 Caleosin: Caleosin re 97.7 0.00074 1.6E-08 40.2 8.0 101 10-111 7-164 (174)
91 smart00054 EFh EF-hand, calciu 97.7 9E-05 1.9E-09 30.1 3.1 27 87-113 2-28 (29)
92 KOG1955 Ral-GTPase effector RA 97.6 0.00027 5.9E-09 48.5 6.5 72 3-76 224-295 (737)
93 smart00054 EFh EF-hand, calciu 97.6 0.00011 2.4E-09 29.8 3.1 27 12-38 2-28 (29)
94 KOG2562 Protein phosphatase 2 97.5 0.00079 1.7E-08 45.7 7.2 98 12-109 313-420 (493)
95 PF12763 EF-hand_4: Cytoskelet 97.4 0.0031 6.7E-08 34.7 7.4 63 45-113 9-71 (104)
96 PF09279 EF-hand_like: Phospho 97.3 0.00057 1.2E-08 35.9 4.2 61 11-72 1-67 (83)
97 KOG0035 Ca2+-binding actin-bun 97.3 0.004 8.6E-08 45.8 9.2 103 4-109 741-848 (890)
98 PF09279 EF-hand_like: Phospho 97.3 0.0019 4.1E-08 33.9 5.8 65 47-113 1-69 (83)
99 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.0005 1.1E-08 38.5 2.9 62 7-70 51-112 (113)
100 KOG0042 Glycerol-3-phosphate d 97.2 0.0019 4.2E-08 45.2 6.1 74 3-76 586-659 (680)
101 KOG4065 Uncharacterized conser 96.9 0.012 2.5E-07 32.9 6.7 34 3-38 62-95 (144)
102 KOG1029 Endocytic adaptor prot 96.9 0.0025 5.4E-08 46.1 5.1 68 5-74 190-257 (1118)
103 KOG0041 Predicted Ca2+-binding 96.8 0.011 2.3E-07 36.3 6.3 65 46-113 99-163 (244)
104 KOG0046 Ca2+-binding actin-bun 96.6 0.014 3E-07 40.7 6.4 67 47-114 20-86 (627)
105 PF05517 p25-alpha: p25-alpha 96.5 0.078 1.7E-06 31.3 9.8 65 12-76 1-71 (154)
106 KOG4666 Predicted phosphate ac 96.2 0.011 2.4E-07 38.9 4.3 66 46-113 259-324 (412)
107 KOG0040 Ca2+-binding actin-bun 96.0 0.021 4.7E-07 44.5 5.4 72 42-113 2246-2324(2399)
108 PLN02952 phosphoinositide phos 95.7 0.16 3.5E-06 36.5 8.6 88 23-112 13-109 (599)
109 KOG4347 GTPase-activating prot 95.1 0.078 1.7E-06 38.0 5.4 101 3-107 497-612 (671)
110 KOG1707 Predicted Ras related/ 94.4 0.12 2.7E-06 36.7 4.9 65 3-73 308-376 (625)
111 KOG4578 Uncharacterized conser 94.1 0.045 9.7E-07 36.1 2.2 65 10-74 333-398 (421)
112 KOG2243 Ca2+ release channel ( 94.0 0.16 3.4E-06 40.1 5.1 59 16-75 4063-4121(5019)
113 KOG3555 Ca2+-binding proteogly 93.6 0.18 4E-06 33.6 4.3 66 4-73 244-309 (434)
114 KOG4347 GTPase-activating prot 93.3 0.15 3.3E-06 36.6 3.8 57 11-68 556-612 (671)
115 KOG4065 Uncharacterized conser 93.2 0.61 1.3E-05 26.3 5.4 69 42-110 62-142 (144)
116 KOG3555 Ca2+-binding proteogly 93.0 0.28 6.2E-06 32.8 4.5 92 12-110 213-307 (434)
117 PF05042 Caleosin: Caleosin re 92.5 1.4 3.1E-05 26.6 6.6 62 10-72 96-164 (174)
118 PF08726 EFhand_Ca_insen: Ca2+ 92.4 0.18 3.9E-06 25.7 2.5 29 83-112 4-32 (69)
119 KOG0998 Synaptic vesicle prote 92.1 0.092 2E-06 39.2 1.7 70 3-74 276-345 (847)
120 PF09069 EF-hand_3: EF-hand; 91.3 1.4 2.9E-05 23.7 7.8 64 9-75 2-76 (90)
121 KOG0169 Phosphoinositide-speci 91.1 1.8 4E-05 32.0 7.0 69 44-115 134-202 (746)
122 KOG1029 Endocytic adaptor prot 91.0 1.9 4.1E-05 32.2 7.0 68 4-74 10-77 (1118)
123 KOG1955 Ral-GTPase effector RA 90.9 1 2.2E-05 31.8 5.4 60 48-112 233-292 (737)
124 KOG3866 DNA-binding protein of 90.2 0.67 1.5E-05 30.7 4.0 59 14-72 248-322 (442)
125 KOG2871 Uncharacterized conser 90.2 0.33 7.2E-06 32.8 2.6 64 9-72 308-372 (449)
126 KOG3866 DNA-binding protein of 89.2 2.3 4.9E-05 28.3 5.8 83 28-110 225-321 (442)
127 PLN02228 Phosphoinositide phos 88.4 3.3 7.2E-05 29.9 6.6 66 44-112 22-91 (567)
128 KOG0506 Glutaminase (contains 87.9 4.9 0.00011 28.5 6.9 61 15-75 91-159 (622)
129 PLN02952 phosphoinositide phos 87.6 1.9 4.1E-05 31.3 5.1 54 59-114 13-66 (599)
130 PLN02230 phosphoinositide phos 87.4 3.2 6.8E-05 30.2 6.1 70 43-113 26-102 (598)
131 PF11422 IBP39: Initiator bind 87.2 4.9 0.00011 24.4 7.0 20 96-115 70-89 (181)
132 KOG1265 Phospholipase C [Lipid 86.9 8.1 0.00018 29.7 7.9 68 45-112 220-298 (1189)
133 KOG3449 60S acidic ribosomal p 86.4 4 8.7E-05 22.7 6.6 55 12-71 3-57 (112)
134 PF08414 NADPH_Ox: Respiratory 86.3 3.9 8.4E-05 22.4 6.9 64 44-115 28-94 (100)
135 PF09069 EF-hand_3: EF-hand; 86.0 2.4 5.1E-05 22.8 3.8 28 85-113 3-30 (90)
136 PF08414 NADPH_Ox: Respiratory 85.3 2.6 5.6E-05 23.1 3.7 62 8-74 28-92 (100)
137 PF11116 DUF2624: Protein of u 84.5 4.5 9.7E-05 21.5 8.2 69 26-94 14-82 (85)
138 KOG1265 Phospholipase C [Lipid 84.4 17 0.00037 28.1 8.6 85 20-113 158-249 (1189)
139 KOG4578 Uncharacterized conser 84.0 1.5 3.3E-05 29.3 3.0 64 47-112 334-397 (421)
140 KOG2301 Voltage-gated Ca2+ cha 83.9 1.1 2.5E-05 36.0 2.8 39 3-41 1410-1448(1592)
141 PLN02222 phosphoinositide phos 83.3 6.3 0.00014 28.7 6.0 61 11-73 26-89 (581)
142 KOG1264 Phospholipase C [Lipid 82.8 5.8 0.00013 30.2 5.7 109 3-112 136-248 (1267)
143 PF00404 Dockerin_1: Dockerin 81.0 2.1 4.5E-05 16.4 1.8 16 95-110 1-16 (21)
144 PF12174 RST: RCD1-SRO-TAF4 (R 80.4 3.7 8E-05 21.0 3.1 52 24-78 6-57 (70)
145 KOG0869 CCAAT-binding factor, 77.6 13 0.00027 22.3 6.6 18 22-39 28-45 (168)
146 PLN02228 Phosphoinositide phos 76.7 27 0.00058 25.6 7.6 62 11-74 25-92 (567)
147 PLN02222 phosphoinositide phos 76.4 25 0.00055 25.8 7.2 69 42-113 21-90 (581)
148 PF14513 DAG_kinase_N: Diacylg 75.6 13 0.00028 21.7 4.7 35 60-96 46-80 (138)
149 PF07308 DUF1456: Protein of u 75.2 9.1 0.0002 19.4 5.6 46 27-72 14-59 (68)
150 PF03979 Sigma70_r1_1: Sigma-7 75.2 7.8 0.00017 20.2 3.5 46 10-59 7-52 (82)
151 KOG4004 Matricellular protein 74.1 1.3 2.8E-05 27.5 0.4 47 24-72 202-248 (259)
152 PF08976 DUF1880: Domain of un 74.0 5.2 0.00011 22.6 2.7 32 43-74 4-35 (118)
153 KOG2871 Uncharacterized conser 74.0 5.3 0.00011 27.4 3.2 32 84-115 308-339 (449)
154 PHA02105 hypothetical protein 73.8 9 0.00019 18.7 3.3 47 26-72 4-55 (68)
155 PF01885 PTS_2-RNA: RNA 2'-pho 71.8 11 0.00025 23.1 4.1 38 20-57 26-63 (186)
156 PLN02230 phosphoinositide phos 71.7 38 0.00082 25.0 7.6 64 10-74 29-102 (598)
157 PF05517 p25-alpha: p25-alpha 71.5 19 0.0004 21.4 6.6 56 59-115 15-71 (154)
158 PF07879 PHB_acc_N: PHB/PHA ac 71.4 5 0.00011 20.1 2.1 22 92-113 10-31 (64)
159 PF02761 Cbl_N2: CBL proto-onc 70.3 15 0.00031 19.6 6.0 51 22-72 18-68 (85)
160 PRK00819 RNA 2'-phosphotransfe 69.3 16 0.00035 22.3 4.4 37 21-57 28-64 (179)
161 PF05099 TerB: Tellurite resis 69.0 19 0.00041 20.5 5.3 80 23-106 36-117 (140)
162 KOG1954 Endocytosis/signaling 68.6 20 0.00044 25.0 5.0 57 12-71 446-502 (532)
163 PF12983 DUF3867: Protein of u 68.1 25 0.00054 21.5 5.1 18 60-77 34-51 (186)
164 PF01023 S_100: S-100/ICaBP ty 67.1 11 0.00025 17.2 4.5 31 8-38 4-36 (44)
165 KOG4070 Putative signal transd 66.7 23 0.0005 21.2 4.4 84 11-94 13-107 (180)
166 PRK09430 djlA Dna-J like membr 66.7 33 0.00072 22.4 7.8 79 22-106 67-150 (267)
167 KOG2243 Ca2+ release channel ( 66.2 17 0.00037 30.1 4.7 56 52-111 4063-4118(5019)
168 PF03672 UPF0154: Uncharacteri 66.2 15 0.00034 18.4 3.9 32 24-55 29-60 (64)
169 PRK00523 hypothetical protein; 65.9 17 0.00036 18.7 3.8 32 24-55 37-68 (72)
170 KOG0039 Ferric reductase, NADH 65.1 50 0.0011 24.6 6.8 80 27-112 4-88 (646)
171 PLN02223 phosphoinositide phos 65.0 44 0.00096 24.3 6.3 28 44-72 14-41 (537)
172 cd07313 terB_like_2 tellurium 64.6 20 0.00044 19.2 6.8 82 24-109 13-96 (104)
173 PF04157 EAP30: EAP30/Vps36 fa 64.5 32 0.00069 21.7 5.2 42 59-100 110-151 (223)
174 PTZ00373 60S Acidic ribosomal 64.4 24 0.00051 19.9 5.5 53 13-70 6-58 (112)
175 KOG0998 Synaptic vesicle prote 64.2 14 0.0003 28.3 4.0 70 3-75 122-191 (847)
176 cd07316 terB_like_DjlA N-termi 63.9 21 0.00046 19.2 8.3 80 24-108 13-96 (106)
177 PF09336 Vps4_C: Vps4 C termin 63.7 12 0.00026 18.5 2.6 25 26-50 29-53 (62)
178 cd00086 homeodomain Homeodomai 61.4 16 0.00036 17.1 6.2 45 3-54 6-50 (59)
179 PF09068 EF-hand_2: EF hand; 60.4 30 0.00066 19.8 8.3 73 42-114 37-126 (127)
180 TIGR01639 P_fal_TIGR01639 Plas 60.2 20 0.00043 17.6 3.8 30 25-54 8-37 (61)
181 cd06404 PB1_aPKC PB1 domain is 58.6 25 0.00055 18.6 3.3 23 82-104 56-78 (83)
182 PRK01844 hypothetical protein; 58.1 25 0.00054 18.1 3.8 32 24-55 36-67 (72)
183 PF00046 Homeobox: Homeobox do 56.6 21 0.00045 16.7 6.2 44 3-53 6-49 (57)
184 PF03250 Tropomodulin: Tropomo 56.5 12 0.00026 22.1 2.1 22 2-23 22-43 (147)
185 PF07492 Trehalase_Ca-bi: Neut 56.4 3.3 7.2E-05 17.3 -0.1 19 88-106 2-20 (30)
186 cd05833 Ribosomal_P2 Ribosomal 56.0 35 0.00075 19.1 5.5 55 14-73 5-59 (109)
187 COG5069 SAC6 Ca2+-binding acti 54.3 60 0.0013 23.5 5.4 68 5-73 480-547 (612)
188 KOG4403 Cell surface glycoprot 53.0 11 0.00024 26.4 1.8 29 44-72 66-94 (575)
189 COG3820 Uncharacterized protei 52.8 11 0.00024 23.1 1.6 48 62-109 20-67 (230)
190 KOG4286 Dystrophin-like protei 52.5 1E+02 0.0023 23.7 6.5 60 13-73 473-532 (966)
191 COG3763 Uncharacterized protei 52.3 32 0.0007 17.6 4.8 33 24-56 36-68 (71)
192 TIGR01565 homeo_ZF_HD homeobox 51.8 29 0.00063 17.0 4.0 37 3-40 7-43 (58)
193 COG2818 Tag 3-methyladenine DN 51.2 10 0.00022 23.3 1.3 34 82-115 52-85 (188)
194 PF12029 DUF3516: Domain of un 51.0 89 0.0019 22.3 6.6 67 27-95 198-283 (461)
195 PF09851 SHOCT: Short C-termin 50.4 20 0.00044 14.9 1.8 13 99-111 14-26 (31)
196 TIGR02787 codY_Gpos GTP-sensin 50.4 69 0.0015 20.9 5.1 32 3-35 176-207 (251)
197 TIGR02574 stabl_TIGR02574 puta 49.9 32 0.0007 16.9 4.3 22 4-25 3-25 (63)
198 KOG3442 Uncharacterized conser 49.8 33 0.00071 19.7 3.0 14 87-100 80-93 (132)
199 PLN00138 large subunit ribosom 49.0 48 0.001 18.7 5.4 52 14-70 5-56 (113)
200 PF08671 SinI: Anti-repressor 48.7 21 0.00046 14.9 1.7 11 102-112 17-27 (30)
201 PF09373 PMBR: Pseudomurein-bi 47.6 24 0.00053 14.9 2.1 13 100-112 3-15 (33)
202 PF12486 DUF3702: ImpA domain 47.0 61 0.0013 19.3 5.9 32 7-38 66-97 (148)
203 cd08324 CARD_NOD1_CARD4 Caspas 45.9 47 0.001 17.7 4.1 12 60-71 27-38 (85)
204 PF13551 HTH_29: Winged helix- 42.7 55 0.0012 17.5 6.3 50 4-53 58-109 (112)
205 PF14713 DUF4464: Domain of un 42.2 94 0.002 20.1 4.8 29 43-71 28-57 (233)
206 KOG0035 Ca2+-binding actin-bun 42.0 1.2E+02 0.0026 23.7 5.7 67 46-113 747-816 (890)
207 PHA02681 ORF089 virion membran 41.6 38 0.00083 17.9 2.3 22 3-25 51-72 (92)
208 cd08310 Death_NFkB-like Death 41.5 51 0.0011 16.8 2.8 25 88-115 39-63 (72)
209 COG4103 Uncharacterized protei 41.4 76 0.0017 18.8 7.7 91 15-111 35-127 (148)
210 KOG4286 Dystrophin-like protei 40.9 44 0.00095 25.5 3.3 66 48-116 472-543 (966)
211 PF00690 Cation_ATPase_N: Cati 40.1 50 0.0011 16.3 3.5 26 90-115 9-34 (69)
212 TIGR01848 PHA_reg_PhaR polyhyd 39.9 69 0.0015 17.9 6.6 55 17-71 10-74 (107)
213 PF09888 DUF2115: Uncharacteri 39.4 87 0.0019 18.9 6.9 29 85-113 57-85 (163)
214 PF05383 La: La domain; Inter 39.4 35 0.00076 16.8 2.0 19 17-35 22-40 (61)
215 COG5502 Uncharacterized conser 39.3 80 0.0017 18.5 4.9 52 59-114 72-124 (135)
216 KOG0488 Transcription factor B 39.0 1.2E+02 0.0026 20.4 5.3 45 3-54 178-222 (309)
217 KOG0042 Glycerol-3-phosphate d 38.6 85 0.0018 23.3 4.3 63 49-114 596-658 (680)
218 PF07199 DUF1411: Protein of u 38.4 1E+02 0.0022 19.3 7.3 61 16-76 128-188 (194)
219 PLN02223 phosphoinositide phos 38.1 1.6E+02 0.0035 21.6 7.0 64 10-74 16-92 (537)
220 smart00513 SAP Putative DNA-bi 36.2 41 0.00089 14.2 1.8 15 101-115 3-17 (35)
221 PF14164 YqzH: YqzH-like prote 35.8 63 0.0014 16.2 3.8 26 87-112 10-36 (64)
222 PF02037 SAP: SAP domain; Int 35.6 41 0.00088 14.3 1.7 14 102-115 4-17 (35)
223 cd04411 Ribosomal_P1_P2_L12p R 34.5 86 0.0019 17.4 5.5 42 27-73 17-58 (105)
224 TIGR03573 WbuX N-acetyl sugar 33.9 1.5E+02 0.0033 20.1 5.3 43 60-111 300-342 (343)
225 PRK01381 Trp operon repressor; 33.9 80 0.0017 17.4 2.9 32 4-35 33-64 (99)
226 PF14237 DUF4339: Domain of un 33.8 36 0.00078 15.3 1.4 18 95-112 7-24 (45)
227 TIGR00470 sepS O-phosphoseryl- 33.7 1.9E+02 0.0041 21.2 7.5 68 3-74 82-153 (533)
228 PF04157 EAP30: EAP30/Vps36 fa 33.5 1.3E+02 0.0027 19.0 7.5 103 7-111 94-200 (223)
229 PF08044 DUF1707: Domain of un 32.7 64 0.0014 15.4 2.8 30 23-52 20-49 (53)
230 PF06226 DUF1007: Protein of u 32.5 61 0.0013 20.3 2.7 24 90-113 55-78 (212)
231 PF08672 APC2: Anaphase promot 32.0 71 0.0015 15.7 3.9 30 43-72 12-42 (60)
232 PF11020 DUF2610: Domain of un 30.6 79 0.0017 16.7 2.4 46 27-72 29-75 (82)
233 PF08461 HTH_12: Ribonuclease 30.5 78 0.0017 15.7 3.2 37 23-59 10-46 (66)
234 KOG4629 Predicted mechanosensi 30.5 2.2E+02 0.0048 21.9 5.5 54 50-113 408-461 (714)
235 PRK06253 O-phosphoseryl-tRNA s 30.4 2.2E+02 0.0049 20.9 7.6 69 3-74 82-154 (529)
236 KOG2278 RNA:NAD 2'-phosphotran 30.4 74 0.0016 19.6 2.6 38 20-57 28-65 (207)
237 cd07909 YciF YciF bacterial st 29.6 71 0.0015 18.9 2.5 22 5-26 45-66 (147)
238 KOG2119 Predicted bile acid be 29.4 96 0.0021 23.7 3.5 20 85-104 587-606 (879)
239 PF09127 Leuk-A4-hydro_C: Leuk 29.4 1.2E+02 0.0027 17.7 6.2 33 4-37 49-81 (143)
240 PF15144 DUF4576: Domain of un 29.2 24 0.00052 18.5 0.4 27 26-52 40-66 (88)
241 PF10256 Erf4: Golgin subfamil 28.7 34 0.00073 19.1 1.0 17 99-115 27-43 (118)
242 TIGR02933 nifM_nitrog nitrogen 28.6 1.7E+02 0.0036 18.9 9.1 64 4-73 19-83 (256)
243 PF14473 RD3: RD3 protein 28.3 1.3E+02 0.0028 17.6 4.3 48 4-54 72-119 (133)
244 PF04558 tRNA_synt_1c_R1: Glut 28.1 71 0.0015 19.3 2.3 28 44-71 83-110 (164)
245 PF07531 TAFH: NHR1 homology t 28.1 61 0.0013 17.8 1.9 16 60-75 38-53 (96)
246 PF05872 DUF853: Bacterial pro 27.9 1.7E+02 0.0038 21.2 4.4 29 86-114 129-157 (502)
247 KOG4301 Beta-dystrobrevin [Cyt 27.1 2.2E+02 0.0048 19.8 5.0 58 17-75 117-174 (434)
248 PF14932 HAUS-augmin3: HAUS au 26.9 1.3E+02 0.0029 19.5 3.6 40 60-100 22-61 (256)
249 KOG2301 Voltage-gated Ca2+ cha 26.5 71 0.0015 26.8 2.6 32 83-114 1415-1446(1592)
250 PF01325 Fe_dep_repress: Iron 26.2 92 0.002 15.1 5.4 46 4-56 2-47 (60)
251 smart00549 TAFH TAF homology. 26.2 1.2E+02 0.0026 16.5 3.5 17 60-76 37-53 (92)
252 COG5562 Phage envelope protein 25.9 67 0.0014 18.8 1.9 18 56-73 82-99 (137)
253 TIGR01345 malate_syn_G malate 25.9 2.3E+02 0.0049 21.7 4.8 34 82-115 53-86 (721)
254 PRK07571 bidirectional hydroge 25.7 1.6E+02 0.0034 17.9 3.5 19 3-21 15-33 (169)
255 PF01726 LexA_DNA_bind: LexA D 25.7 1E+02 0.0022 15.3 4.1 21 1-21 1-21 (65)
256 PF08621 RPAP1_N: RPAP1-like, 25.3 47 0.001 15.6 1.0 20 2-21 13-33 (49)
257 cd00171 Sec7 Sec7 domain; Doma 25.2 1.7E+02 0.0037 17.9 4.4 34 60-94 147-180 (185)
258 PF12207 DUF3600: Domain of un 25.1 1.3E+02 0.0027 18.1 2.9 14 4-17 40-53 (162)
259 PF06569 DUF1128: Protein of u 25.1 1.1E+02 0.0024 15.7 2.7 32 83-116 37-68 (71)
260 PF10165 Ric8: Guanine nucleot 24.9 77 0.0017 22.4 2.4 29 2-30 405-435 (446)
261 COG4443 Uncharacterized protei 24.7 79 0.0017 16.0 1.8 26 90-115 40-70 (72)
262 KOG2557 Uncharacterized conser 24.6 2.6E+02 0.0056 19.7 5.0 49 62-113 74-122 (427)
263 KOG4403 Cell surface glycoprot 24.4 2.8E+02 0.006 20.0 5.3 60 11-74 69-129 (575)
264 PF04282 DUF438: Family of unk 24.3 1.2E+02 0.0025 15.6 6.3 18 35-52 5-22 (71)
265 TIGR02675 tape_meas_nterm tape 24.3 79 0.0017 16.2 1.8 16 98-113 27-42 (75)
266 PF08006 DUF1700: Protein of u 24.1 1.2E+02 0.0026 18.3 2.9 45 28-72 2-50 (181)
267 PTZ00315 2'-phosphotransferase 23.8 2.1E+02 0.0045 21.4 4.3 37 21-57 400-436 (582)
268 KOG0843 Transcription factor E 23.7 1.9E+02 0.0042 18.0 3.9 45 3-54 108-152 (197)
269 PF15244 HSD3: Hydroxy-steroid 23.7 2.4E+02 0.0051 20.1 4.4 50 65-114 362-411 (419)
270 PHA02142 putative RNA ligase 23.5 30 0.00066 23.8 0.3 26 90-115 274-299 (366)
271 cd07176 terB tellurite resista 23.3 1.3E+02 0.0029 16.0 4.5 78 24-106 16-98 (111)
272 PF13608 Potyvirid-P3: Protein 23.3 2.9E+02 0.0062 19.8 6.7 89 7-97 286-385 (445)
273 PF10668 Phage_terminase: Phag 23.0 90 0.002 15.4 1.8 21 90-111 12-32 (60)
274 PF14842 FliG_N: FliG N-termin 22.8 1.2E+02 0.0026 16.7 2.5 29 27-55 30-60 (108)
275 PRK14981 DNA-directed RNA poly 22.8 1.5E+02 0.0034 16.5 3.4 11 44-54 80-90 (112)
276 cd06395 PB1_Map2k5 PB1 domain 22.6 1.4E+02 0.003 15.9 2.5 43 62-111 22-66 (91)
277 COG2024 Phenylalanyl-tRNA synt 22.5 2.9E+02 0.0064 19.6 6.8 88 3-94 82-173 (536)
278 PF10897 DUF2713: Protein of u 22.3 2.2E+02 0.0047 18.1 4.3 44 60-103 175-227 (246)
279 PF06685 DUF1186: Protein of u 22.2 2.4E+02 0.0052 18.5 6.3 98 15-116 6-110 (249)
280 PF08708 PriCT_1: Primase C te 22.1 1.2E+02 0.0026 15.0 2.8 28 87-114 38-65 (71)
281 PF01397 Terpene_synth: Terpen 22.1 2.1E+02 0.0044 17.7 6.4 31 25-55 45-76 (183)
282 PF01984 dsDNA_bind: Double-st 22.0 1.1E+02 0.0024 17.0 2.2 17 99-115 78-94 (107)
283 PF14297 DUF4373: Domain of un 21.9 94 0.002 16.2 1.9 21 5-25 59-79 (87)
284 PF11165 DUF2949: Protein of u 21.9 1.2E+02 0.0026 14.9 4.6 15 100-114 42-56 (58)
285 PF09693 Phage_XkdX: Phage unc 21.8 78 0.0017 14.0 1.4 11 100-110 25-35 (40)
286 PRK11546 zraP zinc resistance 21.6 1.4E+02 0.003 17.7 2.6 20 2-21 42-61 (143)
287 smart00874 B5 tRNA synthetase 21.3 88 0.0019 15.4 1.7 14 102-115 19-32 (71)
288 TIGR00624 tag DNA-3-methyladen 21.3 57 0.0012 20.1 1.1 32 82-113 50-81 (179)
289 PF03484 B5: tRNA synthetase B 21.2 98 0.0021 15.4 1.8 14 102-115 19-32 (70)
290 PF15337 Vasculin: Vascular pr 21.1 1.4E+02 0.0031 16.3 2.4 18 4-21 34-51 (97)
291 PF08100 Dimerisation: Dimeris 20.9 72 0.0016 15.1 1.2 15 23-37 19-33 (51)
292 PF11848 DUF3368: Domain of un 20.8 1.1E+02 0.0024 14.0 3.7 31 24-54 15-46 (48)
293 COG1321 TroR Mn-dependent tran 20.7 2E+02 0.0044 17.1 5.3 47 2-55 2-48 (154)
294 PHA02335 hypothetical protein 20.7 1.8E+02 0.0038 16.4 4.8 12 61-72 23-34 (118)
295 PF09743 DUF2042: Uncharacteri 20.6 2.5E+02 0.0054 18.6 3.9 65 9-74 2-82 (272)
296 cd08032 LARP_7 La RNA-binding 20.5 1.5E+02 0.0033 15.6 3.4 17 19-35 32-48 (82)
297 PF08411 Exonuc_X-T_C: Exonucl 20.3 1.6E+02 0.0034 19.4 3.0 35 4-39 209-245 (269)
298 PRK06402 rpl12p 50S ribosomal 20.1 1.8E+02 0.0039 16.3 5.5 41 26-71 16-56 (106)
299 PF10025 DUF2267: Uncharacteri 20.0 1.8E+02 0.004 16.3 4.1 50 61-114 67-117 (125)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=126.00 Aligned_cols=112 Identities=33% Similarity=0.647 Sum_probs=105.3
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhh
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 81 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 81 (116)
++|+++++++++++|..+|++++|.|+..++..+++.++.+++..++..++..++. +.+.|++.+|+.++.......
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~-- 88 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG-- 88 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC--
Confidence 36899999999999999999999999999999999999999999999999999999 889999999999998766543
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
...++++++|+.||.+++|.|+..++..++..+|+
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc
Confidence 57899999999999999999999999999999986
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.91 E-value=9.6e-23 Score=119.35 Aligned_cols=113 Identities=38% Similarity=0.674 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhh-
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLV- 82 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~- 82 (116)
++..++.++.++|..+|.+++|+|+..++..+++.++..++..++..++..+|.+++|.|++++|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 6788999999999999999999999999999999999999999999999999999999999999999987655432211
Q ss_pred -hHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 83 -NQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 83 -~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
..+.++.+|+.+|.+++|.||..||+.++..+|+
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 3568999999999999999999999999999985
No 3
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=6.9e-21 Score=106.63 Aligned_cols=115 Identities=26% Similarity=0.481 Sum_probs=104.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcC--CCCcccHHHHHHHHhhhHHHh
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSN--GNGLVEFDELVALILPDISEQ 79 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~~ 79 (116)
-.++++++.+++++|..||..++|+|+..++...++++|.+|++.++.+....+..+ +-.+++|++|+-++.......
T Consensus 3 ~~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 3 IAFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999999999999998776 446899999998876655555
Q ss_pred hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 80 VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 80 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
...+.+.+.+.++.||++++|.|...|++++|.++||
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe 119 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE 119 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh
Confidence 5578899999999999999999999999999999986
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=5.2e-19 Score=101.33 Aligned_cols=113 Identities=30% Similarity=0.555 Sum_probs=105.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhh
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 81 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 81 (116)
+++++++.++++..|..+|++++|+|++.++.-+++++|..+...++..+...+|+++.|.|++++|...+...+...
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~-- 102 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER-- 102 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc--
Confidence 358889999999999999999999999999999999999999999999999999999999999999999988777765
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
.+.+++..+|+.+|.|++|.|+..+|+.+...+|+
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc
Confidence 38899999999999999999999999999999985
No 5
>PTZ00183 centrin; Provisional
Probab=99.82 E-value=9.7e-19 Score=102.86 Aligned_cols=111 Identities=28% Similarity=0.581 Sum_probs=98.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLV 82 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 82 (116)
+++++++.++..+|..+|++++|.|+..+|..++..++..++...+..++..+|.+++|.|++++|..++...... ..
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~--~~ 87 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE--RD 87 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC--CC
Confidence 5889999999999999999999999999999999998888888899999999999999999999999887543322 13
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
..+.++.+|+.+|.+++|.|+.+||..++..+|
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELG 120 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 456788999999999999999999999998765
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.82 E-value=1.3e-18 Score=101.23 Aligned_cols=112 Identities=38% Similarity=0.710 Sum_probs=98.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhh
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 81 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 81 (116)
.+++++++..+...|..+|.+++|.|+..+|..++..++..+..+.+..++..++.+++|.|++++|+.++.......
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~-- 80 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-- 80 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC--
Confidence 368899999999999999999999999999999999888888888999999999999999999999998876433211
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
.....+..+|+.+|.+++|.|+.++|..++..+|
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~ 114 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG 114 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC
Confidence 2445778999999999999999999999998765
No 7
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.78 E-value=1.6e-17 Score=94.73 Aligned_cols=108 Identities=21% Similarity=0.478 Sum_probs=99.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLV 82 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 82 (116)
.|++.+|.+++++|...|.|.||.|..++++.++.++|..++++++..|+... .|.|+|.-|+.++...++.. .
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gt--d 98 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGT--D 98 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCC--C
Confidence 47999999999999999999999999999999999999999999999999664 68899999999998877654 3
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
..+.+..+|+.||.+++|.|..+.++..|...|+
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gD 132 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGD 132 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcc
Confidence 5678899999999999999999999999999885
No 8
>PLN02964 phosphatidylserine decarboxylase
Probab=99.64 E-value=4.5e-15 Score=102.56 Aligned_cols=105 Identities=22% Similarity=0.360 Sum_probs=92.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCcCCCCcccHHHHHHHHhhhHH
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALG-LKPTGDQ---LHILLADMDSNGNGLVEFDELVALILPDIS 77 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~ 77 (116)
+.++..++.++.+.|..+|++++|.+ +..+++.++ ..+++.+ +..++..+|.+++|.|++++|+.++.. +.
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~-lg 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA-FG 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH-hc
Confidence 46788999999999999999999997 888888888 5777776 899999999999999999999998864 22
Q ss_pred HhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 78 EQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 78 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
. ....+++..+|+.+|.|++|.|+.+||..++..
T Consensus 210 ~--~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 N--LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred c--CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 2 246778999999999999999999999999876
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.63 E-value=6.1e-15 Score=88.41 Aligned_cols=106 Identities=29% Similarity=0.534 Sum_probs=88.4
Q ss_pred cccHHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCc-ccHHHHHHHHhhhHHHhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMD-LDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGL-VEFDELVALILPDISEQV 80 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~~~~~~ 80 (116)
.++..++..+..+|.+++.+ ++|+++.++|..+. .+..++ ....++..++.+++|. |++++|+..+..+....
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~- 100 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA- 100 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc-
Confidence 48899999999999999999 99999999999997 333343 4456666667776676 99999999988766643
Q ss_pred hhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 81 LVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 81 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
...++++.+|+.+|.+++|.|+.+|+..++..+
T Consensus 101 -~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 101 -SKREKLRFAFRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred -cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 344699999999999999999999999999876
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.58 E-value=6.2e-14 Score=84.23 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=86.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKP-TGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL 81 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 81 (116)
++++.++.++.+-|..- -++|.++..+|+.++....... +..-...+|+.+|.+++|.|++.||+.++......
T Consensus 22 ~f~~~ei~~~Yr~Fk~~--cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG--- 96 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNE--CPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG--- 96 (193)
T ss_pred CCCHHHHHHHHHHhccc--CCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC---
Confidence 45666666666655442 2589999999999999987544 44567889999999999999999999887765554
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
...+.++.+|+.+|.+++|.|+++|+..++..+
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 356677889999999999999999999988764
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.58 E-value=4.5e-14 Score=84.84 Aligned_cols=103 Identities=18% Similarity=0.314 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHh--------hhh
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQ--------VLV 82 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~--------~~~ 82 (116)
....+|..+|.+++|.|+..+|..++..+.....++.+..+|+.||.+++|.|++++++.++....... ...
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 456789999999999999999999988877777788899999999999999999999998876554311 112
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
..+....+|+.+|.|+||.||.+||...+..
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 3456788999999999999999999987754
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.54 E-value=2.6e-13 Score=81.83 Aligned_cols=98 Identities=28% Similarity=0.418 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHH
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQL 87 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (116)
..++...|...|.+..|.|+..|+..+|..... ..+.+.+..|...+|.+..|.|+++||..++ .....+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw---------~~i~~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALW---------KYINQW 126 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH---------HHHHHH
Confidence 347888899999999999999999999987654 5678899999999999999999999999997 467788
Q ss_pred HHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 88 MEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 88 ~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
+.+|+.+|.|++|.|+..||+..|..+|
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~~G 154 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQLG 154 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHHcC
Confidence 9999999999999999999999999987
No 13
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=6.3e-13 Score=77.87 Aligned_cols=101 Identities=25% Similarity=0.441 Sum_probs=84.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCC-----CHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhH
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALGLKP-----TGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQ 84 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 84 (116)
.++..++..+|.+++|.|+..+|..++....... ..+++..+|+.+|.+++|.|+..++..++...-.+ .+.
T Consensus 44 ~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~---~~~ 120 (151)
T KOG0027|consen 44 EELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK---LTD 120 (151)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc---CCH
Confidence 4566778899999999999999999998765322 34599999999999999999999999987543222 467
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 85 EQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 85 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+.+..+++..|.+++|.|+.++|..++..
T Consensus 121 ~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 121 EECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 88999999999999999999999988764
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.51 E-value=2.1e-13 Score=69.25 Aligned_cols=61 Identities=31% Similarity=0.661 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHH----HHHHHHhhCcCCCCcccHHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQ----LHILLADMDSNGNGLVEFDELVAL 71 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~~~i~~~ef~~~ 71 (116)
+++++|..+|.+++|+|+..+|..++..++...+... +..++..+|.+++|.|+++||+.+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4778899999999999999999999998876555333 333466666666667777766654
No 15
>PTZ00183 centrin; Provisional
Probab=99.51 E-value=1e-12 Score=77.21 Aligned_cols=100 Identities=19% Similarity=0.332 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRAL-GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLME 89 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 89 (116)
.+..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.++|..++.. .+ ...+...+..
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~--~~l~~~~~~~ 130 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKE-LG--ETITDEELQE 130 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hC--CCCCHHHHHH
Confidence 57788999999999999999999987654 34556778999999999999999999999988743 11 1256778899
Q ss_pred HHhhhCCCCCCceeHHHHHHHHHh
Q 033583 90 VFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+|..+|.+++|.|+.++|..++..
T Consensus 131 ~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 131 MIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHhc
Confidence 999999999999999999998864
No 16
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.50 E-value=5.5e-13 Score=80.42 Aligned_cols=93 Identities=26% Similarity=0.477 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHH
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLM 88 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (116)
+..++.+|..+|.|.+|.|+..|++.+|..+|..++++-+..+++.++..+.|.|.+++|++++ .....+-
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc---------v~L~~lt 193 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC---------VVLQRLT 193 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH---------HHHHHHH
Confidence 5678999999999999999999999999999999999999999999998878999999999987 4566777
Q ss_pred HHHhhhCCCCCCce--eHHHHHHH
Q 033583 89 EVFRSFDRDGNGYI--TAAELAGS 110 (116)
Q Consensus 89 ~~f~~~D~~~~g~i--~~~e~~~~ 110 (116)
++|+..|.+.+|.| +.++|...
T Consensus 194 ~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 194 EAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHHhccccceeEEEeHHHHHHH
Confidence 89999999999885 55666543
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.48 E-value=5.2e-13 Score=71.32 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 6 SEQLKQLKDIFMRFDM-DLDGSLTQLELAALLRA-LGLKPTG-DQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 6 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+.-+..+..+|..||+ +++|+|+..+|+.++.. ++..++. +++..++..+|.+++|.|+|++|+.++..
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3456788999999999 99999999999999998 8766777 89999999999999999999999998754
No 18
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.48 E-value=2.4e-12 Score=84.07 Aligned_cols=105 Identities=23% Similarity=0.370 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhh
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLK-PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLV 82 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 82 (116)
+.++.-.+++.+|..+|.+++|.++..++.+.+..+..+ +..+....+++.+|.+.+|.++|.+|...+. .
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~--------~ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD--------N 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH--------H
Confidence 456677789999999999999999999999999998766 6677788899999999999999999998863 3
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
.+.++..+|...|.+.||.|...|+...|+.+|.
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi 113 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI 113 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCC
Confidence 5567788999999999999999999999988873
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.47 E-value=2.8e-12 Score=74.89 Aligned_cols=99 Identities=16% Similarity=0.320 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALG-LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLME 89 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 89 (116)
.+.++|..+|. +++.|++.+|..++.... ...+.+++.++|+.+|.+++|+|+..++..++. .++. ..+.+++..
T Consensus 57 ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-~lge--~~~deev~~ 132 (160)
T COG5126 57 EINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK-SLGE--RLSDEEVEK 132 (160)
T ss_pred HHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH-hhcc--cCCHHHHHH
Confidence 34556777777 889999999999997654 566789999999999999999999999988865 2332 357789999
Q ss_pred HHhhhCCCCCCceeHHHHHHHHHh
Q 033583 90 VFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+++.+|.+++|.|+.++|.+.+..
T Consensus 133 ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 133 LLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999999987653
No 20
>PTZ00184 calmodulin; Provisional
Probab=99.47 E-value=2.7e-12 Score=74.59 Aligned_cols=99 Identities=24% Similarity=0.391 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALG-LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLME 89 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 89 (116)
.+..+|..+|.+++|.|++.+|..++.... .......+..+|..+|.+++|.|+.++|..++.. .+. ......+..
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~--~~~~~~~~~ 124 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN-LGE--KLTDEEVDE 124 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH-HCC--CCCHHHHHH
Confidence 577889999999999999999999987643 3455678899999999999999999999888743 211 245677888
Q ss_pred HHhhhCCCCCCceeHHHHHHHHH
Q 033583 90 VFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
+|+.+|.+++|.|+.+||..++.
T Consensus 125 ~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 125 MIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHhcCCCCCCcCcHHHHHHHHh
Confidence 99999999999999999998875
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=2.1e-12 Score=68.97 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 7 EQLKQLKDIFMRFD-MDLDG-SLTQLELAALLRA-----LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 7 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
.-+..+.++|..|| ++++| +|+..+++.+++. ++..++++++..+++.+|.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 44678999999998 79999 6999999999998 788889999999999999999999999999988753
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.44 E-value=2.7e-12 Score=69.82 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=64.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
.+|++++..+..+|..+|.+++|.|+..++..+++..+ ++.+++..++..++.+++|.|++++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 37889999999999999999999999999999998854 67889999999999999999999999988754
No 23
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.41 E-value=1.3e-11 Score=74.17 Aligned_cols=102 Identities=24% Similarity=0.351 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHh----hhhhHH
Q 033583 12 LKDIFMRFDMDLDGS-LTQLELAALLRALGLKPTGD-QLHILLADMDSNGNGLVEFDELVALILPDISEQ----VLVNQE 85 (116)
Q Consensus 12 l~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~----~~~~~~ 85 (116)
..+++..++.+++|. |+.++|...+.....+.+.. .++-+|+.||.+++|.|+.+++..++....... .....+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 456788899988888 99999999998876655555 899999999999999999999999987766532 123345
Q ss_pred HHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 86 QLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 86 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.+...|..+|.++||.|+.+||..++..
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 5678999999999999999999998865
No 24
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.35 E-value=1.3e-11 Score=66.02 Aligned_cols=69 Identities=25% Similarity=0.437 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 6 SEQLKQLKDIFMRFDM--DLDGSLTQLELAALLRA-LGLK----PTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 6 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
++++..+..+|..+|. +++|.|+..++..+++. ++.. ++.+++..++..++.+++|.|++++|+.++..
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 5678889999999999 89999999999999976 4433 45889999999999999999999999998754
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.34 E-value=2.8e-11 Score=64.65 Aligned_cols=69 Identities=25% Similarity=0.432 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---cCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 6 SEQLKQLKDIFMRFDM-DL-DGSLTQLELAALLRA---LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 6 ~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
++.+..+-.+|.+|+. ++ +|+|+..+|+.+++. ++..++++++.++++.+|.+++|.|+|++|+.++..
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4566788999999997 66 899999999999963 678889999999999999999999999999988754
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.33 E-value=2.6e-11 Score=65.68 Aligned_cols=67 Identities=27% Similarity=0.438 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 7 EQLKQLKDIFMRFDM-DL-DGSLTQLELAALLRA-----LGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
.....+..+|..+|. ++ +|.|+..+++.++.. ++..++.+++..++..+|.+++|.|++++|+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 345678999999997 87 799999999999986 45678889999999999999999999999998874
No 27
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.33 E-value=4.2e-11 Score=64.61 Aligned_cols=67 Identities=28% Similarity=0.535 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhc-CCCCCc-ccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 8 QLKQLKDIFMRFD-MDLDGS-LTQLELAALLRA-LG----LKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 8 ~~~~l~~~f~~~d-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
-+..+.++|..|| .+++|+ |+..+++.+++. ++ ..++.+++..++..+|.+++|.|++++|+.++..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4567899999997 999995 999999999975 43 3568889999999999999999999999988754
No 28
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=9.8e-11 Score=67.66 Aligned_cols=102 Identities=21% Similarity=0.389 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHH-HcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHH
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLR-ALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLM 88 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (116)
.++.++..-+|++++|+|++++|+..+. .++..-+.+++..+|+.+|.+.+|.|++.+|+.+. ..++++ .+.+++.
T Consensus 69 ~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrva-keLgen--ltD~El~ 145 (172)
T KOG0028|consen 69 EEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVA-KELGEN--LTDEELM 145 (172)
T ss_pred HHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHH-HHhCcc--ccHHHHH
Confidence 3455667788899999999999998864 45666689999999999999999999999999874 445544 5778899
Q ss_pred HHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 89 EVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 89 ~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+..+-+|.+++|-|+.+||.++++..
T Consensus 146 eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 146 EMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHhcccccccccHHHHHHHHhcC
Confidence 99999999999999999999998753
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.29 E-value=8.4e-11 Score=63.53 Aligned_cols=69 Identities=26% Similarity=0.378 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhh
Q 033583 7 EQLKQLKDIFMRFD-MDLDG-SLTQLELAALLRAL-----GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 7 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
.-+..+.++|..|| .+++| .|+..+++.++... ....++.++..++..+|.+++|.|+|++|+.++...
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34567888899999 78998 59999999999762 334577899999999999999999999999987543
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.28 E-value=4.7e-11 Score=60.49 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=53.0
Q ss_pred HHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHh-hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 47 QLHILLADMDSNGNGLVEFDELVALILPDISEQ-VLVNQEQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 47 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
.+..+|..+|.+++|.|+.+++..++....... .......+..+|+.+|.+++|.|+.+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 367899999999999999999999876544321 12345577888999999999999999999875
No 31
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.26 E-value=8.1e-11 Score=59.65 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 13 KDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+++|..+|.+++|.|+..++..++..++. +.+.+..++..++.+++|.|++++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 56899999999999999999999988764 7889999999999999999999999988754
No 32
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.23 E-value=1e-10 Score=56.98 Aligned_cols=51 Identities=29% Similarity=0.661 Sum_probs=46.8
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 23 LDGSLTQLELAALLRALGLK-PTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
++|.|+.++|..++..++.. ++.+++..++..+|.+++|.|+++||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999888888 9999999999999999999999999999874
No 33
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.22 E-value=1.4e-10 Score=57.36 Aligned_cols=61 Identities=31% Similarity=0.658 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 12 LKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999888899999999999999999999999998764
No 34
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.16 E-value=3.4e-10 Score=83.57 Aligned_cols=106 Identities=29% Similarity=0.531 Sum_probs=91.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKP-------TGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+.+|++.+.++.-+|.+||.+.+|.+++.+|...|+++|+.. ++++++.++...|++.+|+|+..+|+.+|..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 458999999999999999999999999999999999999764 2347999999999999999999999999876
Q ss_pred hHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHH
Q 033583 75 DISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAG 109 (116)
Q Consensus 75 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 109 (116)
.-..+.. ..+++..+|+.+|. +..+|+.++...
T Consensus 2325 ~ETeNI~-s~~eIE~AfraL~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2325 KETENIL-SSEEIEDAFRALDA-GKPYVTKEELYQ 2357 (2399)
T ss_pred ccccccc-chHHHHHHHHHhhc-CCccccHHHHHh
Confidence 5555543 44589999999999 888888888744
No 35
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=9.5e-10 Score=58.85 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 6 SEQLKQLKDIFMR-FDMDLDG-SLTQLELAALLRAL-----GLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 6 ~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+.-+..+..+|.. +|.+++| .|+..||+.++... .....+.++..++..+|.+++|.|+|++|+.++..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3456788999999 6787876 99999999999774 23456789999999999999999999999988754
No 36
>PF14658 EF-hand_9: EF-hand domain
Probab=99.15 E-value=3.4e-10 Score=56.51 Aligned_cols=60 Identities=30% Similarity=0.535 Sum_probs=56.1
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCcCCC-CcccHHHHHHHHh
Q 033583 14 DIFMRFDMDLDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGN-GLVEFDELVALIL 73 (116)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~ 73 (116)
..|..||+++.|.|...++...|++++. .+.++++..+...+|+++. |.|++++|+.+|.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 3689999999999999999999999988 8899999999999999988 9999999999875
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.12 E-value=9e-10 Score=61.61 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
...+.-.|..+|.|++|+|+..|+..+. .......+..++..+|.+++|.||++||+..+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3344444555555555555555555433 12223344444555555555555555554443
No 38
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.12 E-value=1.3e-09 Score=65.34 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=80.3
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLV 82 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~ 82 (116)
.+++.+|..+..+|..+|.+.||+|+..+++.++..+|.+-+.--+.++....|.|.+|+|++.+|+-+++.-.. +...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa-gEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA-GELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc-cccc
Confidence 478999999999999999999999999999999999998888888999999999999999999999988754433 2122
Q ss_pred hHHHHHHHHhh--hCCCCCCceeHHHH
Q 033583 83 NQEQLMEVFRS--FDRDGNGYITAAEL 107 (116)
Q Consensus 83 ~~~~~~~~f~~--~D~~~~g~i~~~e~ 107 (116)
....+..+-+. .|..+.|......|
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknF 197 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNF 197 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHH
Confidence 22233333333 56666665544443
No 39
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.2e-09 Score=69.59 Aligned_cols=105 Identities=22% Similarity=0.315 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH-------HHhh
Q 033583 8 QLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI-------SEQV 80 (116)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~-------~~~~ 80 (116)
...++..++.++|.+++|.|+..++..++..........+...-+..++.+.+|.|+|++|...+.... ....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 346788899999999999999999999987765555566778888999999999999999998775421 1000
Q ss_pred hhhHH----HHHHHHhhhCCCCCCceeHHHHHHHHH
Q 033583 81 LVNQE----QLMEVFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 81 ~~~~~----~~~~~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
..... .-++.|+..|.|++|.+|.+||..+|.
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH 190 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH 190 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC
Confidence 11112 225689999999999999999999875
No 40
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.04 E-value=3.8e-09 Score=56.47 Aligned_cols=69 Identities=17% Similarity=0.428 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 6 SEQLKQLKDIFMRFDMD--LDGSLTQLELAALLR-ALGLKPT----GDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 6 ~~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+.-+..+...|..|+.. ++|.|+..+++.++. .++..++ ++++..++..+|.+++|.|++++|+.++..
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 34466788899999865 479999999999997 4444455 889999999999999999999999988754
No 41
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.01 E-value=4.2e-09 Score=56.32 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHHHHHHHhhCc-CCCCcccHHHHHHHHhhhHHHhhhhhH-HHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMDS-NGNGLVEFDELVALILPDISEQVLVNQ-EQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d~-~~~~~i~~~ef~~~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|+.||. +++|.|+..++..++...++.. .+. ..+..+++.+|.|++|.|+.+||..++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~--ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL--LKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh--ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 467889999999 9999999999999987645432 233 789999999999999999999999988765
No 42
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.93 E-value=3e-08 Score=66.05 Aligned_cols=103 Identities=21% Similarity=0.358 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHc-CCCCCH--------------------------------------------
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRAL-GLKPTG-------------------------------------------- 45 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~-------------------------------------------- 45 (116)
.+..-|+++|+.++|+|+..++...+... +.+++.
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 56778999999999999999999887642 222221
Q ss_pred --HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHH-hhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 46 --DQLHILLADMDSNGNGLVEFDELVALILPDISE-QVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 46 --~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+.++.+|+.+|.|..|.|+.+||..++..+-.. +.....+.+-.+-+.+|.++||.|..+||...++-
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 225567777888888888888888777544332 12245566777788888888888888888777653
No 43
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.93 E-value=8.5e-09 Score=56.61 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=60.4
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhh
Q 033583 1 MVMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 1 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
|..+++++...+..+|..+++ ++|.|+-.+.+.++... +++.+.+..++...|.+.+|.++++||+.+++..
T Consensus 1 ~~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 1 MPKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp ----SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 567899999999999999985 58999999999998774 5778999999999999999999999999887643
No 44
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.93 E-value=2.9e-09 Score=45.04 Aligned_cols=29 Identities=41% Similarity=0.708 Sum_probs=24.4
Q ss_pred HHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 86 QLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 86 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+++.+|+.+|+|++|.|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 35778999999999999999999888764
No 45
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.89 E-value=4.1e-08 Score=56.30 Aligned_cols=105 Identities=14% Similarity=0.256 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHHHHhcCCC-----------CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 4 VQSEQLKQLKDIFMRFDMDL-----------DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
++..++.++...|+.+.++. .-.++++.+.++ ..+.-++-...+.++| ..++.|.+++++|+.++
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELkenpfk~ri~e~F---SeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKENPFKRRICEVF---SEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcChHHHHHHHHh---ccCCCCcccHHHHHHHH
Confidence 67788888888888776531 124666555444 4555555555555554 55899999999999987
Q ss_pred hhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 73 LPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
...... ....-++..+|+.+|.++++.|..+++...+.++
T Consensus 98 SV~sE~--APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l 137 (189)
T KOG0038|consen 98 SVFSEM--APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL 137 (189)
T ss_pred HHHHhh--ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH
Confidence 653322 1344567889999999999999999999988876
No 46
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.89 E-value=2.4e-08 Score=53.94 Aligned_cols=69 Identities=13% Similarity=0.230 Sum_probs=54.9
Q ss_pred HHHHHHHHhhC-cCCCC-cccHHHHHHHHhhhHHHh--hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMD-SNGNG-LVEFDELVALILPDISEQ--VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|..|+ .+++| .|+..++..++....+.. .......+..+++.+|.+++|.|+.+||..++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 35677899998 77888 599999999886543311 11355689999999999999999999999998765
No 47
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.85 E-value=2.9e-08 Score=53.04 Aligned_cols=68 Identities=13% Similarity=0.262 Sum_probs=54.7
Q ss_pred HHHHHHHhhCc-CC-CCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 47 QLHILLADMDS-NG-NGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 47 ~~~~~~~~~d~-~~-~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
.+..+|..|+. ++ +|.|+.++|..++......+...+.+++..+++.+|.+++|.|+.+||..++..+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 56778999987 56 7899999999998643211222577899999999999999999999999988765
No 48
>PLN02964 phosphatidylserine decarboxylase
Probab=98.85 E-value=3.3e-08 Score=69.24 Aligned_cols=70 Identities=30% Similarity=0.427 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 5 QSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
++.+...+..+|..+|.+++|.|+..+|..++..++...+++++..+|+.+|.+++|.|+++++..++..
T Consensus 174 te~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4455566899999999999999999999999998887788899999999999999999999999998765
No 49
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=2e-08 Score=64.23 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHH---hhhhh
Q 033583 8 QLKQLKDIFMRFDMDLDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISE---QVLVN 83 (116)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~---~~~~~ 83 (116)
.+.+-.+.|...|.|++|.++.+||..++..-.. .+..--|..-+...|++++|.|++++|+.-+...... +.+ .
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeW-v 239 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEW-V 239 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccc-c
Confidence 4456678899999999999999999999855332 3444567778888999999999999998776543321 111 1
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 84 QEQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 84 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
..+-...+...|.|++|+++.+|++.-+
T Consensus 240 ~~Ere~F~~~~DknkDG~L~~dEl~~WI 267 (325)
T KOG4223|consen 240 LTEREQFFEFRDKNKDGKLDGDELLDWI 267 (325)
T ss_pred cccHHHHHHHhhcCCCCccCHHHHhccc
Confidence 1122356667788888888888776543
No 50
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.84 E-value=3.4e-08 Score=53.42 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=55.6
Q ss_pred HHHHHHHHhhCc-CC-CCcccHHHHHHHHhhhHHH--hhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMDS-NG-NGLVEFDELVALILPDISE--QVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d~-~~-~~~i~~~ef~~~~~~~~~~--~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|..+|. ++ +|.|+..++..++....+. ....+...+..+++.+|.+++|.|+.++|..++..+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467889999987 86 6999999999987643322 112466789999999999999999999999988765
No 51
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.84 E-value=8.7e-09 Score=44.36 Aligned_cols=30 Identities=40% Similarity=0.806 Sum_probs=26.5
Q ss_pred HHHHHHhhhCCCCCCceeHHHHHHHHH-hhC
Q 033583 86 QLMEVFRSFDRDGNGYITAAELAGSMA-IIG 115 (116)
Q Consensus 86 ~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~g 115 (116)
+++.+|+.+|.+++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999999 687
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.82 E-value=6.6e-08 Score=52.10 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=56.7
Q ss_pred HHHHHHHHhhC-cCCCC-cccHHHHHHHHhhhHHHh--hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMD-SNGNG-LVEFDELVALILPDISEQ--VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+.+.++|..+| .+++| .|+..++..++....+.. ...+...+..+++.+|.+++|.|+.++|..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 56889999997 99999 599999999986534321 01356789999999999999999999999988765
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.80 E-value=1.4e-08 Score=42.92 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRA 38 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 38 (116)
+++.+|..+|.|++|+|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3567788888888888888888887765
No 54
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.79 E-value=8.4e-08 Score=51.21 Aligned_cols=69 Identities=10% Similarity=0.199 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCc--CCCCcccHHHHHHHHhhhHHHh--hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMDS--NGNGLVEFDELVALILPDISEQ--VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d~--~~~~~i~~~ef~~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+.+..+|..+|. +++|.|+..++..++....+.. ...+...+..++..+|.+++|.|+.++|..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 457788999999 7999999999999886533321 11246789999999999999999999999988754
No 55
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.78 E-value=6.6e-08 Score=51.66 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=56.1
Q ss_pred HHHHHHHHhhC-cCCCC-cccHHHHHHHHhhhHHHh--hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMD-SNGNG-LVEFDELVALILPDISEQ--VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~~~~~~--~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|..+| .+++| .|+..++..++...++.. ...+.+.+..+++.+|.+++|.|+.++|..++..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46788999998 78999 599999999987633321 11466779999999999999999999999888754
No 56
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.78 E-value=1.2e-07 Score=54.47 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=76.3
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHh--hhhhHHHHHH
Q 033583 13 KDIFMRFDMDLDGSLTQLELAALLRALGL-KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQ--VLVNQEQLME 89 (116)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~--~~~~~~~~~~ 89 (116)
++++..|..++.|.++.++|..++.-+.- .+.+-.+.-+|+.||-++++.|+-+++...+...-... .....-....
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 45678889999999999999999876653 44455777889999999999999999987764322211 0111223456
Q ss_pred HHhhhCCCCCCceeHHHHHHHHHh
Q 033583 90 VFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+..-.|.|++|.|+..||.++...
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHh
Confidence 778889999999999999998764
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.73 E-value=1.2e-07 Score=53.13 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHH
Q 033583 42 KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 42 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
......+..+|..+|.+++|.|+..|+..+. + ......+...|..+|.+++|.||.+||...+.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---l----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR---L----DPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---c----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 3445678999999999999999999998764 1 12345567899999999999999999998874
No 58
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.72 E-value=6e-08 Score=47.04 Aligned_cols=52 Identities=27% Similarity=0.540 Sum_probs=42.9
Q ss_pred CCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 60 NGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+|.|+.++|..++ ..++... .+..++..+|..+|.+++|.|+.+||..++..
T Consensus 2 ~G~i~~~~~~~~l-~~~g~~~-~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRAL-SKLGIKD-LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHH-HHTTSSS-SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHH-HHhCCCC-CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6889999999988 3332211 56778999999999999999999999999864
No 59
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.72 E-value=1.7e-07 Score=50.87 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|..+|.+++|.|+.+++..++.. . ....+.+..+++.+|.+++|.|+.++|..++..+
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~----~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLK-S----GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHH-c----CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 45778899999999999999999998754 1 1456788899999999999999999999988754
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=1.2e-07 Score=46.64 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=50.6
Q ss_pred HHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 48 LHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 48 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
+..+|..+|.+++|.|++.+|..++..... ......+..+|..+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE---GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999988754321 2456678889999999999999999998765
No 61
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.70 E-value=5.7e-07 Score=48.00 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 7 EQLKQLKDIFMRFDMDLDGSLTQLELAALLRA-----LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
.-+..+..+|..|. ++.+.++..+|+.++.. +.....+..+..++...|.+++|.|+|.||+.++..
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 34567788999997 45679999999999854 234456789999999999999999999999998764
No 62
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.69 E-value=2.4e-07 Score=53.59 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCc
Q 033583 23 LDGSLTQLELAALLRA-LGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGY 101 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 101 (116)
..|-|++.-|..++.. +...-+++.|..+|..+|.++.|.|.-+.+..++.. ++.. .+.+++..+|+.+-.+..|.
T Consensus 77 a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr--~~~eEV~~m~r~~p~d~~G~ 153 (171)
T KOG0031|consen 77 APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDR--FTDEEVDEMYREAPIDKKGN 153 (171)
T ss_pred CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH-hccc--CCHHHHHHHHHhCCcccCCc
Confidence 3445555555544432 222223444555555555555555555544444322 2221 34445555555555555555
Q ss_pred eeHHHHHHHHH
Q 033583 102 ITAAELAGSMA 112 (116)
Q Consensus 102 i~~~e~~~~l~ 112 (116)
+....|..++.
T Consensus 154 ~dy~~~~~~it 164 (171)
T KOG0031|consen 154 FDYKAFTYIIT 164 (171)
T ss_pred eeHHHHHHHHH
Confidence 55555555443
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.66 E-value=2.9e-07 Score=60.87 Aligned_cols=62 Identities=23% Similarity=0.488 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
++.++|...|.+.||.|..+|+...++.++.+++++++..++...|+++.+.|++++|.+.+
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 34444445555555555555555555555555555555555555555555555555544443
No 64
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.65 E-value=2.1e-07 Score=62.25 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH----hhCcCCCCcccHHHHHHHHhhhHHHhh
Q 033583 5 QSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLA----DMDSNGNGLVEFDELVALILPDISEQV 80 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~----~~d~~~~~~i~~~ef~~~~~~~~~~~~ 80 (116)
|-+....+...|-.+|.+.+|.|+.+++...-.. ..+.--++++|. ......+|+++|++|+-++......
T Consensus 273 S~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k-- 347 (493)
T KOG2562|consen 273 SYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK-- 347 (493)
T ss_pred eHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC--
Confidence 4444455555677889999999999998876332 345567888888 3334467899999999887554333
Q ss_pred hhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 81 LVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 81 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.+...+...|+.+|.+++|.|+.+|++.+.+.
T Consensus 348 -~t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 348 -DTPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred -CCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 35567899999999999999999999988764
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.63 E-value=9.8e-08 Score=41.01 Aligned_cols=30 Identities=47% Similarity=0.701 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-HcC
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLR-ALG 40 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 40 (116)
+++.+|..+|.+++|+|+..+|..++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 477899999999999999999999998 554
No 66
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.62 E-value=3.9e-07 Score=45.89 Aligned_cols=61 Identities=23% Similarity=0.422 Sum_probs=50.9
Q ss_pred HHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 49 HILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 49 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+|..+|.+++|.|+.+++..++... + .+...+..+|+.+|.+++|.|+.++|...+..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g----~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G----LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C----CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 467889999999999999999887531 1 356678999999999999999999999887643
No 67
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.62 E-value=5.8e-07 Score=48.12 Aligned_cols=69 Identities=10% Similarity=0.256 Sum_probs=53.6
Q ss_pred HHHHHHHHh-hCcCCCC-cccHHHHHHHHhhhHHHhh--hhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLAD-MDSNGNG-LVEFDELVALILPDISEQV--LVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~-~d~~~~~-~i~~~ef~~~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|.. .+.++++ .|+.+||..++....+... ......+..+++.+|.+++|.|+.+||..++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 346778888 5676765 8999999999876543211 1245678899999999999999999999988765
No 68
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.57 E-value=1.1e-06 Score=46.90 Aligned_cols=66 Identities=11% Similarity=0.212 Sum_probs=53.0
Q ss_pred HHHHHHHhhCcC--CCCcccHHHHHHHHhhhHHHhhhhh----HHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 47 QLHILLADMDSN--GNGLVEFDELVALILPDISEQVLVN----QEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 47 ~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
.+..+|..|... .+|.|+.+++..++....+.. .+ ...+..+|+.+|.+++|.|+.++|..++..+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~--~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF--LKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh--hccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 466788888755 368999999999986544332 33 6789999999999999999999999988765
No 69
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.52 E-value=7.9e-07 Score=50.64 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
+.+.+-.+.||++++|.|+..+++.+|..+|-.++++++..++... .|.+|.|.|+.|+..+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 3455567788999999999999999998888888888888888665 4567889999887654
No 70
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.49 E-value=3.1e-07 Score=37.42 Aligned_cols=25 Identities=36% Similarity=0.676 Sum_probs=21.0
Q ss_pred HHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 87 LMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 87 ~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568899999999999999998764
No 71
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.42 E-value=2.7e-06 Score=58.01 Aligned_cols=74 Identities=27% Similarity=0.471 Sum_probs=64.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGL---KPTGDQLHILLADMDSNGNGLVEFDELVALILPDI 76 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 76 (116)
+++|+++++.+.+.|...| +++|+++..++..++...+. ....+++..+....+.+.+|.|++++|+.++....
T Consensus 11 ~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 11 SQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred ccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 4689999999999999999 99999999999999987653 34578999999999999999999999998765443
No 72
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.40 E-value=2.3e-06 Score=57.07 Aligned_cols=98 Identities=20% Similarity=0.321 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHcC-CCCC--HHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHH--H-----------
Q 033583 15 IFMRFDMDLDGSLTQLELAALLRALG-LKPT--GDQLHILLADMDSNGNGLVEFDELVALILPDIS--E----------- 78 (116)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~--~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~--~----------- 78 (116)
-|..+|+..+|.|+..+|..++-... .+.. ...+.++-..+..+ ...|+++||.+++.-.-. .
T Consensus 323 EF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy~~A 401 (489)
T KOG2643|consen 323 EFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFYHMA 401 (489)
T ss_pred HHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHHHHc
Confidence 48899999999999999999886653 2222 22455666666555 345999998877531110 0
Q ss_pred ------h-----------hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 79 ------Q-----------VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 79 ------~-----------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
. .......+.-+|..||.|+||.|+.+||..++++
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 0 0011123456899999999999999999999864
No 73
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.36 E-value=3.9e-06 Score=39.77 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 26 SLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
.++..|++.+|+.++..+.+.-+..+|..+|++++|.+..+||..++.
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 367888999999988888888899999999999999999999887753
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.35 E-value=4.1e-06 Score=56.06 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 40 GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 40 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+.......+..+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||.+.+..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4556678899999999999999999999842 356899999999999999999998865
No 75
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.31 E-value=3.1e-06 Score=56.51 Aligned_cols=95 Identities=22% Similarity=0.381 Sum_probs=66.7
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHc------CCC--------C-CHHHHHHHH--HhhCcCCCCcccHHHHHHHHhhh
Q 033583 13 KDIFMRFDMDLDGSLTQLELAALLRAL------GLK--------P-TGDQLHILL--ADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~------~~~--------~-~~~~~~~~~--~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
+-.|..||.|+||.|+.+||..+.+-. +.. . -..++...+ .-+.+++++.+++++|+.++..
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~- 314 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN- 314 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH-
Confidence 346889999999999999999886421 110 0 011222222 2356788899999999998743
Q ss_pred HHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 76 ISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 76 ~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
...+-+..-|..+|+..+|.|+..+|...+...
T Consensus 315 ------Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 315 ------LQEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred ------HHHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 345566777888888888999999988877653
No 76
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.26 E-value=5.1e-06 Score=55.61 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
...+..+|..+|.+++|.|+..||.. +..+|..+|.+++|.|++++|...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34678899999999999999999942 578999999999999999999998753
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.26 E-value=2.3e-06 Score=34.81 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH
Q 033583 12 LKDIFMRFDMDLDGSLTQLELAAL 35 (116)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~ 35 (116)
++..|..+|.|++|.|+..||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356778888888888888888764
No 78
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.26 E-value=4.9e-06 Score=51.96 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 7 EQLKQLKDIFMRFDMDLDGSLTQLELAALLRALG---LKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
.-.+.+..+|.+.|.|.+|+|+..++...+..-. ..-..++-+..|+..|.+++|.|+|++|.-.+
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 3446788999999999999999999998875421 12233455667888999999999999996554
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.24 E-value=7.2e-06 Score=55.10 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALG----LKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
.+..+|...|.+++|.|+..||..+...++ ..++...+.++.+.+|-+++|.|++.||+.+++.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 477899999999999999999999976653 4678899999999999999999999999998753
No 80
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.20 E-value=5.6e-06 Score=53.52 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHH
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRALG-LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQL 87 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (116)
...+...|..||.+++|.+++.+....+.-+. ...+...+.-.|..++...+|.++-.+|..++..... ...-.+
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg----v~~l~v 333 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG----VEVLRV 333 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC----cceeec
Confidence 35678889999999999999999888876664 4567778888999999999999988777665533221 122234
Q ss_pred HHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 88 MEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 88 ~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
-..|+..+...+|+|+.++|+.+....+
T Consensus 334 ~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 334 PVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cccchhhhcccCcceeHHHHHHHHHhCc
Confidence 5689999999999999999999987654
No 81
>PF14658 EF-hand_9: EF-hand domain
Probab=98.16 E-value=1.5e-05 Score=39.97 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=51.0
Q ss_pred HHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCC-CceeHHHHHHHHHh
Q 033583 50 ILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGN-GYITAAELAGSMAI 113 (116)
Q Consensus 50 ~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-g~i~~~e~~~~l~~ 113 (116)
.+|..+|.+..|.|...++...+...-.+ .....++..+...+|+++. |.|+.++|..+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~--~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGR--SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCC--CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 46889999999999999988887542221 2466789999999999998 99999999999874
No 82
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.10 E-value=7.6e-05 Score=39.94 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=53.2
Q ss_pred HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhh--hhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 46 DQLHILLADMDSNGNGLVEFDELVALILPDISEQV--LVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 46 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~--~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+..+|..|. ...+.++..||..++...++.-. ......+..+++..|.++||.|+..||..++..+
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35667888886 34568999999999877665321 1356778999999999999999999999887654
No 83
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.06 E-value=1.6e-05 Score=54.18 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=55.6
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHH---------------------
Q 033583 19 FDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDIS--------------------- 77 (116)
Q Consensus 19 ~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~--------------------- 77 (116)
.|..+||.|+++||+.+ ..+-+. ++.....+|..+|..++|.++++++..++.....
T Consensus 83 aD~tKDglisf~eF~af-e~~lC~-pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~ 160 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAF-ESVLCA-PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIR 160 (694)
T ss_pred hhhcccccccHHHHHHH-HhhccC-chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHH
Confidence 34555666666666654 222111 2445556666666666666666666555532210
Q ss_pred ----------Hh-hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 78 ----------EQ-VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 78 ----------~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+- .....+..+.+|+..|+.++|+||.=+|..++..
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhh
Confidence 00 0012345678999999999999999998887654
No 84
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.97 E-value=3e-06 Score=47.36 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHH
Q 033583 41 LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELA 108 (116)
Q Consensus 41 ~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~ 108 (116)
.......+...|..+|.+++|.|+..|+..+.... .+ ...=++..++.=|.|+||.||..|+.
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~~----~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-MP----PEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-ST----TGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-hh----hHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 34455667777777887777777777776553321 11 11123446677777888888877764
No 85
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.87 E-value=0.0002 Score=51.10 Aligned_cols=103 Identities=17% Similarity=0.312 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhH
Q 033583 5 QSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQ 84 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 84 (116)
..+....+..+|...|.+++|.++..+...++..+...+....+..+|...+..+.+.+.++++..+... .. ...
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~-~~----~rp 205 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE-LT----KRP 205 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh-hc----cCc
Confidence 4455667899999999999999999999999999998999999999999998888999999999887532 11 122
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 85 EQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 85 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
++..+|..+-.+ .+.++.+++..++...
T Consensus 206 -ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 206 -EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred -hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 778888888444 8889999999998765
No 86
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.83 E-value=7.1e-05 Score=46.91 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=52.9
Q ss_pred HHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHH
Q 033583 45 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 45 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
...+..+|...|++.++.|+..+....+.....+......++-+..|+..|++++|.|+++|++--+.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 34678899999999999999999887765544443333445556789999999999999999975443
No 87
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.81 E-value=0.00081 Score=46.23 Aligned_cols=105 Identities=21% Similarity=0.347 Sum_probs=72.5
Q ss_pred cHHHHHHHHHHHHHh---cCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHH-HhhCcCCCCcccHHHHHHHHhhhHHHh
Q 033583 5 QSEQLKQLKDIFMRF---DMDLDGSLTQLELAALLRA-LGLKPTGDQLHILL-ADMDSNGNGLVEFDELVALILPDISEQ 79 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~---d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~-~~~d~~~~~~i~~~ef~~~~~~~~~~~ 79 (116)
...+..+++.+|..+ +.++..+++.++|...--. .+.+..++++..+. ...|...+|-|+|+||+.+-. ..+.
T Consensus 28 kra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~-~lC~- 105 (694)
T KOG0751|consen 28 KRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFES-VLCA- 105 (694)
T ss_pred ccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHh-hccC-
Confidence 334445677777665 5566678999999876433 34444444444444 445666789999999988743 2221
Q ss_pred hhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 80 VLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 80 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
.......+|..||..++|.+|.+++..++.+.
T Consensus 106 ---pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 106 ---PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred ---chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 23355779999999999999999999988754
No 88
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.79 E-value=0.00076 Score=47.17 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=80.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-HHcCCCCCHHHHHHHHHhhC---cCC--CCcccHHHHHHHHhhhH
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALL-RALGLKPTGDQLHILLADMD---SNG--NGLVEFDELVALILPDI 76 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~~~~~~~~~~~~~~~~~~~d---~~~--~~~i~~~ef~~~~~~~~ 76 (116)
.|.+..+..+.++|...|.|.+|.++-.|+-.+= .+++.++...++..+-...+ +++ +..++...|+-+...+.
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfi 267 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFI 267 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHH
Confidence 4778888999999999999999999999998773 34566666666555554432 222 33567777766544332
Q ss_pred HHhh---------------------------------------hhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 77 SEQV---------------------------------------LVNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 77 ~~~~---------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
..+. ..-.+.+..+|..+|.|+||-++..|+...+...+
T Consensus 268 ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 268 ERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 1110 11245678899999999999999999999887653
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.74 E-value=0.00025 Score=33.67 Aligned_cols=49 Identities=16% Similarity=0.349 Sum_probs=34.4
Q ss_pred ccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 63 VEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 63 i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+++.|...++.. + +.......+..+|+..|.+++|.+..+||..+++.+
T Consensus 2 msf~Evk~lLk~-~--NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKM-M--NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHH-T--T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-H--ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 566666555432 1 223456678889999999999999999999999875
No 90
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.69 E-value=0.00074 Score=40.20 Aligned_cols=101 Identities=16% Similarity=0.259 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCC----------------------------------------------
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALGLKP---------------------------------------------- 43 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---------------------------------------------- 43 (116)
..|++-...+|.|+||.|..-+-..-++++|.++
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3566777789999999998877766665433221
Q ss_pred -------CHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhh---h-hhHHHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 44 -------TGDQLHILLADMDSNGNGLVEFDELVALILPDISEQV---L-VNQEQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 44 -------~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~---~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
.++..+++|..+...+.+.+++.|+..++...++... + ...-+...+|... .+.+|.+..++++.+.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 1456788888888777788888888887765443211 1 1223444555555 6778889988888764
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.67 E-value=9e-05 Score=30.11 Aligned_cols=27 Identities=41% Similarity=0.677 Sum_probs=20.2
Q ss_pred HHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 87 LMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 87 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777788888888888888777764
No 92
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00027 Score=48.45 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=63.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI 76 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 76 (116)
.+++++-+.+...|+.+.++..|+|+-.--++++.. ..+.-.++..++...|.+.+|.+++.|||.+|+...
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 468888889999999999999999999888888766 456678999999999999999999999999987654
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.63 E-value=0.00011 Score=29.83 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 033583 12 LKDIFMRFDMDLDGSLTQLELAALLRA 38 (116)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~ 38 (116)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777778877888888888777654
No 94
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.51 E-value=0.00079 Score=45.74 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=73.7
Q ss_pred HHHHHHHhc----CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH---H---Hhhh
Q 033583 12 LKDIFMRFD----MDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI---S---EQVL 81 (116)
Q Consensus 12 l~~~f~~~d----~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~---~---~~~~ 81 (116)
+.++|...- .-.+|.+++.+|..++-++...-++.-++-+|+.+|.+++|.++..+...+..... . .-..
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l 392 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEAL 392 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcc
Confidence 566676332 34588999999999999988888888999999999999999999998765543221 1 1111
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHH
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAG 109 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 109 (116)
.-.+.+..++...-+...+.||..+|+.
T Consensus 393 ~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 393 PFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 2345566778888888899999999987
No 95
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.37 E-value=0.0031 Score=34.74 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 45 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 45 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
......+|...+. ++|.|+-++...++.. . ....+.+..++...|.+++|.++.+||.-.+.-
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~----S-~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMK----S-GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHH----T-TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHH----c-CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3456778888874 5799999998776532 2 246688999999999999999999999877653
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.34 E-value=0.00057 Score=35.93 Aligned_cols=61 Identities=18% Similarity=0.400 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHhhCcCC----CCcccHHHHHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRAL-GL-KPTGDQLHILLADMDSNG----NGLVEFDELVALI 72 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~~----~~~i~~~ef~~~~ 72 (116)
++..+|..+.. +.+.++..+|..+|..- +. ..+.+.+..++..+.++. .+.++.++|...+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 35677888844 67788888888888654 22 457778888887776653 5667777777765
No 97
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.31 E-value=0.004 Score=45.76 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=78.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHH
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTG-----DQLHILLADMDSNGNGLVEFDELVALILPDISE 78 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 78 (116)
.++....++++.|..++....|.++..+++..+..+|++... .++..+....+...-|.+++.+|...+-+....
T Consensus 741 ~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 741 TSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred hhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 567778899999999999999999999999999999887653 345555566666666889999999988654433
Q ss_pred hhhhhHHHHHHHHhhhCCCCCCceeHHHHHH
Q 033583 79 QVLVNQEQLMEVFRSFDRDGNGYITAAELAG 109 (116)
Q Consensus 79 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 109 (116)
. .+...+..+|+.|-+++. .|..+|+.+
T Consensus 821 l--~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 L--DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred h--cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 2 355667778888855444 788888876
No 98
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.28 E-value=0.0019 Score=33.95 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=50.9
Q ss_pred HHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCC----CCCceeHHHHHHHHHh
Q 033583 47 QLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRD----GNGYITAAELAGSMAI 113 (116)
Q Consensus 47 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~~ 113 (116)
+|..+|..+.. +.+.++.++|..++........ .+...+..++..+.++ ..+.+|.+.|..+|.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~-~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPR-LTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TT-SSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcccc-CcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 47889999955 6788999999999877666532 3677788888777655 4799999999999865
No 99
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.16 E-value=0.0005 Score=38.46 Aligned_cols=62 Identities=27% Similarity=0.373 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q 033583 7 EQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVA 70 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 70 (116)
.....+.=.|..+|.|+||.|+..|+..+...+ .+.+.=+...+..+|.++++.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344456667999999999999999999886544 34444578899999999999999999864
No 100
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.15 E-value=0.0019 Score=45.15 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=67.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI 76 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 76 (116)
+++++++......|..+|.++.|+++.+.+..+++..+...+...+++...+.+..-+|.+...+|.+++....
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999988888999999999999888889999999998875544
No 101
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.012 Score=32.92 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRA 38 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 38 (116)
++|+++++.= .|...|.++++.++--++.+++..
T Consensus 62 ~mtpeqlqfH--YF~MHDldknn~lDGiEl~kAiTH 95 (144)
T KOG4065|consen 62 KMTPEQLQFH--YFSMHDLDKNNFLDGIELLKAITH 95 (144)
T ss_pred hCCHHHHhhh--hhhhhccCcCCcchHHHHHHHHHH
Confidence 3566655432 378889999999999888888754
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0025 Score=46.13 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=58.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 5 QSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
++....+++.+|..+|+.-+|+++-.+-+.+|... .++...+..++..-|+|++|.++.++|+-+++.
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 44455678899999999999999999999998774 466778899999999999999999999877643
No 103
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.77 E-value=0.011 Score=36.32 Aligned_cols=65 Identities=14% Similarity=0.264 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 46 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 46 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+....+|..||.+.+|.|++.++..++-. ++.+ .+.-.++.+....|-|.+|.||.-||.-+++.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEK-Lgap--QTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEK-LGAP--QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHH-hCCc--hhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 35667888899999999999998776532 2211 34456677888888999999998887776654
No 104
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.55 E-value=0.014 Score=40.70 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=52.9
Q ss_pred HHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 47 QLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 47 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
++...|...| ++.|.|+..+...++...-........++++.+....+.+.+|.|+.++|..++..+
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3556777777 889999999999887654333334567889999999999999999999999876543
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.45 E-value=0.078 Score=31.34 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=47.9
Q ss_pred HHHHHHHh---cCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH
Q 033583 12 LKDIFMRF---DMDLDGSLTQLELAALLRALG---LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI 76 (116)
Q Consensus 12 l~~~f~~~---d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 76 (116)
|+++|..| -......++...|..+++..+ ..++...+.-+|..+-..+...|+|++|..++....
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 34556655 344556899999999999865 357888999999998766667899999999886533
No 106
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.22 E-value=0.011 Score=38.86 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 46 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 46 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
..+..+|..+|.+++|.+++.+....++...++. .+..-++.+|+.|+.+-||.++.++|.-+|..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~--~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPP--VTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCC--CcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 4678899999999999999999988766544443 47778899999999999999999888887764
No 107
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.98 E-value=0.021 Score=44.54 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=53.8
Q ss_pred CCCHHH---HHHHHHhhCcCCCCcccHHHHHHHHhhhH---HH-hhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 42 KPTGDQ---LHILLADMDSNGNGLVEFDELVALILPDI---SE-QVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 42 ~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~---~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.++++. ...+|..+|.+.+|.+++.+|.+++...= +. -.......+..++...||+.+|.|+..++.++|-.
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 355554 45589999999999999999998875321 00 00123347889999999999999999999998753
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=95.73 E-value=0.16 Score=36.46 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=60.3
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhh------
Q 033583 23 LDGSLTQLELAALLRALGL--KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSF------ 94 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~------ 94 (116)
+.|.+++.+|..+.+.+.. .....++..+|..+..+ .+.++.++|..++.....+. ..+.+.+..++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~-~~~~~~~~~i~~~~~~~~~~ 90 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDEL-DCTLAEAQRIVEEVINRRHH 90 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCc-CCCHHHHHHHHHHHHhhccc
Confidence 4689999999988877642 34678999999999654 46799999999987655533 12333344443322
Q ss_pred -CCCCCCceeHHHHHHHHH
Q 033583 95 -DRDGNGYITAAELAGSMA 112 (116)
Q Consensus 95 -D~~~~g~i~~~e~~~~l~ 112 (116)
...+.+.++.+.|..+|.
T Consensus 91 ~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 91 VTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccCcCHHHHHHHHc
Confidence 112335589999998885
No 109
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.13 E-value=0.078 Score=37.96 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=70.4
Q ss_pred cccHHHHHHHHHHHHHh-----------cCCCC---CcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCcCCCCcccHHH
Q 033583 3 MVQSEQLKQLKDIFMRF-----------DMDLD---GSLTQLELAALLRALG-LKPTGDQLHILLADMDSNGNGLVEFDE 67 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~-----------d~~~~---g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~e 67 (116)
.|+.+++..+..+|..- |++-. .++.+..|..+++.+. +..+...+..+|...|.+.+|.+++.+
T Consensus 497 ~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~ 576 (671)
T KOG4347|consen 497 SLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKD 576 (671)
T ss_pred ccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHH
Confidence 46777888877777532 12211 2466667777766653 345556778899999999999999999
Q ss_pred HHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHH
Q 033583 68 LVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAEL 107 (116)
Q Consensus 68 f~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 107 (116)
+++.+...... ...+.+..+|+.+|+.++ ....++.
T Consensus 577 lv~gL~~l~~~---~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 577 LVSGLSILKAG---DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHhhccCCcc-ccccccc
Confidence 98887543332 356678889999999888 7766654
No 110
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.37 E-value=0.12 Score=36.71 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=49.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKP----TGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
.|++.-++.+..+|..+|.++||.++-.++..++......+ ..++.. -....|.+++..|++.|.
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHH
Confidence 47888899999999999999999999999999988765433 111100 112568899999988774
No 111
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.10 E-value=0.045 Score=36.14 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALG-LKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+.++=.|..+|.|.++-|...|++-+-.-+. ......=...++..+|.+++..|+++|+...+..
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3444456777777777777777665533221 2333344556777777777777777777766544
No 112
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.03 E-value=0.16 Score=40.15 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=48.8
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhh
Q 033583 16 FMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 16 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
|..+|+++.|.|+..+|.+++... ...++++++-++.....+.+...+|++|+.-++..
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 566789999999999999997653 34577888989888888888999999999877543
No 113
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.58 E-value=0.18 Score=33.64 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
+.+--...+.=+|.++|.|.+|.|+..|+..+- ....+.=++..|..+|...+|.|+-.|++-.+.
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 344555666677889999999999998887752 223344567788888888889999999887764
No 114
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.25 E-value=0.15 Score=36.56 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHH
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDEL 68 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 68 (116)
-+.++|+.+|.+.+|.|+..++...|..+......+.+.-+|..++.++. ....++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45789999999999999999999999888766667788889999998887 6777765
No 115
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.61 Score=26.27 Aligned_cols=69 Identities=23% Similarity=0.205 Sum_probs=45.3
Q ss_pred CCCHHHHH-HHHHhhCcCCCCcccHHHHHHHHhhhHH-------Hhhh----hhHHHHHHHHhhhCCCCCCceeHHHHHH
Q 033583 42 KPTGDQLH-ILLADMDSNGNGLVEFDELVALILPDIS-------EQVL----VNQEQLMEVFRSFDRDGNGYITAAELAG 109 (116)
Q Consensus 42 ~~~~~~~~-~~~~~~d~~~~~~i~~~ef~~~~~~~~~-------~~~~----~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 109 (116)
.++++.+. ..|+-.|.++++.++--+++.++...-. +... ....-+..+++.-|.+++|+|...||..
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 34555443 3556678888898888888766543322 1111 1223456688888999999999999976
Q ss_pred H
Q 033583 110 S 110 (116)
Q Consensus 110 ~ 110 (116)
.
T Consensus 142 ~ 142 (144)
T KOG4065|consen 142 R 142 (144)
T ss_pred h
Confidence 4
No 116
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.04 E-value=0.28 Score=32.78 Aligned_cols=92 Identities=24% Similarity=0.256 Sum_probs=60.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHH
Q 033583 12 LKDIFMRFDMDLDGSLTQLELAALLRAL---GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLM 88 (116)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 88 (116)
|+.=|..+-.+.++......+..+-..+ ..++....+..||+..|.+.++.++..|+..+... ....=++
T Consensus 213 L~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld-------knE~Cik 285 (434)
T KOG3555|consen 213 LRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD-------KNEACIK 285 (434)
T ss_pred HHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-------CchhHHH
Confidence 4444554434444444433343332222 23456778999999999999999999998776421 2333456
Q ss_pred HHHhhhCCCCCCceeHHHHHHH
Q 033583 89 EVFRSFDRDGNGYITAAELAGS 110 (116)
Q Consensus 89 ~~f~~~D~~~~g~i~~~e~~~~ 110 (116)
..|..-|..++|.|+..|+-.-
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~C 307 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYC 307 (434)
T ss_pred HHHhhhcccccCccccchhhhh
Confidence 7788889999999999987543
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.48 E-value=1.4 Score=26.62 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-------CCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALGL-------KPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
.++.++|.+++..+.+.++..|+..+++.-.. ....-++...+... .+.+|.+..++...+.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 46778899999888889999999999876322 22333445555444 4567888888866553
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.45 E-value=0.18 Score=25.65 Aligned_cols=29 Identities=34% Similarity=0.629 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHH
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
+.+.+..+|+.+ .++.+.||.+++++.|.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 446677888888 77788888888887653
No 119
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=0.092 Score=39.22 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
.+++.....+..+|...|.+.+|.|+..+....+.. ..+....+..++...+....+.+++.+|+-.++.
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 356778888889999999999999999999998766 5677788999999999999999999988776654
No 120
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.34 E-value=1.4 Score=23.74 Aligned_cols=64 Identities=13% Similarity=0.254 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHH-------cC----CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhh
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRA-------LG----LKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-------~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
.++++.+|..+ .|.+|.++...|...|.. ++ ....+..+..+|.... ....|+.++|+..+...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 35788889988 688999999999988763 22 1226677788887752 34569999999987553
No 121
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=91.08 E-value=1.8 Score=31.97 Aligned_cols=69 Identities=19% Similarity=0.363 Sum_probs=54.3
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 44 TGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 44 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
...++..+|...|++.+|.+++.+-..++.. ++. ......++.+|+..+...++.+..+++..+...++
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~-~n~--~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQ-LNV--QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHH-HHH--hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 4567889999999999999999998887543 222 24556677788888889999999999998877654
No 122
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=1.9 Score=32.25 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+|.++-.+-.+.|..+. .+.|+|+-.+-+.++-..+ ++..-+..++...|.+.+|+++..+|.-+|..
T Consensus 10 vT~~Er~K~~~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred cchHHHHHHHHHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 56677777777777774 5689999999999986644 55678889999999999999999999877643
No 123
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=1 Score=31.82 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=42.2
Q ss_pred HHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHH
Q 033583 48 LHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 48 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
..+.|+.+..|..|.|+-.--..++ .+. -....++..++.+-|.++||-+|..||...+.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFF----tKS-klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFF----TKS-KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhh----hhc-cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 4456666777777766543322222 111 24567899999999999999999999988765
No 124
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.17 E-value=0.67 Score=30.69 Aligned_cols=59 Identities=29% Similarity=0.463 Sum_probs=39.7
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHH-c--CCCCC--HHH-----------HHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 14 DIFMRFDMDLDGSLTQLELAALLRA-L--GLKPT--GDQ-----------LHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~-~--~~~~~--~~~-----------~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
..|..+|.|++|.++..++-.++.. + .+.+. +.+ -+.++..+|.+.+..|+.++|+...
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 3456678899999999999887653 1 12211 111 2235566788888899999998764
No 125
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=0.33 Score=32.77 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 9 LKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGD-QLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 9 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
..++++.|..+|+.++|+|+..-+..++..++...++. .+..+-..+++..-|.|-..+|...+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 46788999999999999999999999999988444444 44445555676666777777765443
No 126
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.18 E-value=2.3 Score=28.34 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhh-----hhh-----HH--HH-HHHHhh
Q 033583 28 TQLELAALLRAL-GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQV-----LVN-----QE--QL-MEVFRS 93 (116)
Q Consensus 28 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-----~~~-----~~--~~-~~~f~~ 93 (116)
|..+++.+-..+ |..+..-.-...|...|.+++|.++-.++-+++...+.... ... .+ .| ..+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 444555554433 23333333455677778899999999998888765543210 001 11 12 236778
Q ss_pred hCCCCCCceeHHHHHHH
Q 033583 94 FDRDGNGYITAAELAGS 110 (116)
Q Consensus 94 ~D~~~~g~i~~~e~~~~ 110 (116)
.|.+.+..||.+||...
T Consensus 305 vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLND 321 (442)
T ss_pred cccchhhhhhHHHHHhh
Confidence 89999999999999754
No 127
>PLN02228 Phosphoinositide phospholipase C
Probab=88.44 E-value=3.3 Score=29.91 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=31.4
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCC----CCCceeHHHHHHHHH
Q 033583 44 TGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRD----GNGYITAAELAGSMA 112 (116)
Q Consensus 44 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~----~~g~i~~~e~~~~l~ 112 (116)
+.+++..+|..+..+ +.++.++|..++....... ....+.+..++..+... ..|.++.+.|..+|.
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGER-HAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCc-cCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 455666666665432 3466666655554332221 12233344444444322 234566666666553
No 128
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=87.90 E-value=4.9 Score=28.50 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=46.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh---Cc-----CCCCcccHHHHHHHHhhh
Q 033583 15 IFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADM---DS-----NGNGLVEFDELVALILPD 75 (116)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~~~i~~~ef~~~~~~~ 75 (116)
+|..+....++.++...|..+|++.|...++..+..++..+ +. .....++.+.|...+...
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 67777666679999999999999999988888888887654 32 123468888887766443
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=87.60 E-value=1.9 Score=31.28 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 59 GNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 59 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+.|.++|++|..++..... .......++..+|..+-. +.+.++.++|..+|...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~-~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKI-TEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhcc-ccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHh
Confidence 3578999999876543221 112356789999999954 44689999999999764
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.42 E-value=3.2 Score=30.22 Aligned_cols=70 Identities=7% Similarity=0.019 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhh-------CCCCCCceeHHHHHHHHHh
Q 033583 43 PTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSF-------DRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~-------D~~~~g~i~~~e~~~~l~~ 113 (116)
.+..++..+|..+..++ +.++.++|..++....+.....+.+.+..++..+ ..-+.+.++.+.|..+|.+
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34567788887775333 6788888877776544321112333333333222 1223455888888877743
No 131
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=87.18 E-value=4.9 Score=24.43 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=8.3
Q ss_pred CCCCCceeHHHHHHHHHhhC
Q 033583 96 RDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 96 ~~~~g~i~~~e~~~~l~~~g 115 (116)
+.....||..||..++...|
T Consensus 70 ~k~~~~iT~~Df~~F~A~FG 89 (181)
T PF11422_consen 70 PKNTNVITIPDFYKFLARFG 89 (181)
T ss_dssp -SS-SEEEHHHHHHHHHHSS
T ss_pred CCCCceeeHHHHHHHHHHhC
Confidence 33344444444444444443
No 132
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.88 E-value=8.1 Score=29.67 Aligned_cols=68 Identities=6% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhh-------hhHHHHHHHHhhhCCCC----CCceeHHHHHHHHH
Q 033583 45 GDQLHILLADMDSNGNGLVEFDELVALILPDISEQVL-------VNQEQLMEVFRSFDRDG----NGYITAAELAGSMA 112 (116)
Q Consensus 45 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~-------~~~~~~~~~f~~~D~~~----~g~i~~~e~~~~l~ 112 (116)
..+++.+|..+..+..-.++.+++..++......+.+ .....+..+...|.++. +|.++.+=|.+++.
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~ 298 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLM 298 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhh
Confidence 3688999999987777889999999988765543221 34567778888887775 58888888877764
No 133
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=86.43 E-value=4 Score=22.72 Aligned_cols=55 Identities=15% Similarity=0.388 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q 033583 12 LKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVAL 71 (116)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 71 (116)
+-..|..+...++-..+..+++.+|...|.....+.+..++..+ +|+ +.++++..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel----~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL----KGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh----cCC-CHHHHHHH
Confidence 34556777778888999999999999999999999999999887 233 66776554
No 134
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=86.27 E-value=3.9 Score=22.39 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=34.4
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhh---CCCCCCceeHHHHHHHHHhhC
Q 033583 44 TGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSF---DRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 44 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~---D~~~~g~i~~~e~~~~l~~~g 115 (116)
....++.-|..+.. +|.+....|-.++.- .. ..+-+.++|..+ -.-....|+.+|+..++.++.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM--~d----SkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGM--KD----SKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT----S-----HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCC--cc----cHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 46677777777755 677888888777642 11 222222233222 122256688888888887763
No 135
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.95 E-value=2.4 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=17.8
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 85 EQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 85 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
++++.+|..+ .|.+|.++...|..+|..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 4567777777 777777877777776654
No 136
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.30 E-value=2.6 Score=23.08 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCc---CCCCcccHHHHHHHHhh
Q 033583 8 QLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDS---NGNGLVEFDELVALILP 74 (116)
Q Consensus 8 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~i~~~ef~~~~~~ 74 (116)
-...+...|..+.. +|+|+...|...+. -.-+.+-..++|..+-- -....|+.+++..++.+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 35678888888876 89999999998753 33456666666655411 12456899988887643
No 137
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=84.51 E-value=4.5 Score=21.53 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhh
Q 033583 26 SLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSF 94 (116)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~ 94 (116)
.||..|+....+..+.+++.+.++.+.......+-.-.+-++-..++........-.....+..+|..|
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 688999999999999999999999999888655544445444444433222211113445556666554
No 138
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=84.37 E-value=17 Score=28.12 Aligned_cols=85 Identities=13% Similarity=0.284 Sum_probs=58.8
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCC--Ccc-----cHHHHHHHHhhhHHHhhhhhHHHHHHHHh
Q 033583 20 DMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGN--GLV-----EFDELVALILPDISEQVLVNQEQLMEVFR 92 (116)
Q Consensus 20 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~--~~i-----~~~ef~~~~~~~~~~~~~~~~~~~~~~f~ 92 (116)
..+..|.|+...+..++.+ .-.+..++++...+..... ..| +++.|..++.. .....++..+|.
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~k------lcpR~eie~iF~ 228 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNK------LCPRPEIEEIFR 228 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHh------cCCchhHHHHHH
Confidence 4577899999888877655 2334677887777654322 234 44444444321 234468899999
Q ss_pred hhCCCCCCceeHHHHHHHHHh
Q 033583 93 SFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 93 ~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.+..++...+|.++|..+++.
T Consensus 229 ki~~~~kpylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 229 KISGKKKPYLTKEQLVDFLNK 249 (1189)
T ss_pred HhccCCCccccHHHHHHHHhh
Confidence 999999999999999999874
No 139
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=83.97 E-value=1.5 Score=29.35 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=44.5
Q ss_pred HHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHH
Q 033583 47 QLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 47 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 112 (116)
-+...|..+|++.++.|...|+..+ ...+.... ....=.+..|+.-|.++|..||..|++.-|.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpF-K~~l~k~s-~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPF-KRVLLKKS-KPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchH-HHHHHhhc-cHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3566788889999998888886554 22222111 1223356688888999999999999987654
No 140
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.89 E-value=1.1 Score=35.98 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGL 41 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~ 41 (116)
.|++.++++..++|..+|++..|.|+..++..+++.+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~p 1448 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDP 1448 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCC
Confidence 388999999999999999999999999999999988643
No 141
>PLN02222 phosphoinositide phospholipase C 2
Probab=83.28 E-value=6.3 Score=28.68 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCc-CCCCcccHHHHHHHHh
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALGL--KPTGDQLHILLADMDS-NGNGLVEFDELVALIL 73 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~ 73 (116)
++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. ...+.++++.|...+.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 34444555532 357777777776655422 2345555666655421 1244566666666653
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.85 E-value=5.8 Score=30.19 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=64.9
Q ss_pred cccHHHHHH-HHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCH-HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhh
Q 033583 3 MVQSEQLKQ-LKDIFMRFDMDLDGSLTQLELAALLRALGLKPTG-DQLHILLADMDSNGNGLVEFDELVALILPDISEQV 80 (116)
Q Consensus 3 ~l~~~~~~~-l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 80 (116)
..++-++.. +++.+...|..-...|+..+++.++.......+. ..+.+-|..... ..+.++|++|..+....+-...
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccc
Confidence 345666654 4667777776666679999999999887766543 344455554432 3567999999887655543322
Q ss_pred hhhHHHHHHHHh--hhCCCCCCceeHHHHHHHHH
Q 033583 81 LVNQEQLMEVFR--SFDRDGNGYITAAELAGSMA 112 (116)
Q Consensus 81 ~~~~~~~~~~f~--~~D~~~~g~i~~~e~~~~l~ 112 (116)
.....+....|- .-+...--.++..+|.++|.
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~ 248 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLI 248 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHH
Confidence 122222222221 11222235688888888875
No 143
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=81.01 E-value=2.1 Score=16.37 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=10.2
Q ss_pred CCCCCCceeHHHHHHH
Q 033583 95 DRDGNGYITAAELAGS 110 (116)
Q Consensus 95 D~~~~g~i~~~e~~~~ 110 (116)
|.+++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677888777766543
No 144
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.43 E-value=3.7 Score=20.95 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHH
Q 033583 24 DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISE 78 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 78 (116)
+-.+++..+..++.. .++......+...|+.-..+.|+.++|+..++...++
T Consensus 6 sp~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 6 SPWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred CCcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 446666666666655 3444444555555544456778999988887665543
No 145
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=77.60 E-value=13 Score=22.26 Aligned_cols=18 Identities=11% Similarity=0.241 Sum_probs=13.1
Q ss_pred CCCCcccHHHHHHHHHHc
Q 033583 22 DLDGSLTQLELAALLRAL 39 (116)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~ 39 (116)
+.|.+|+..++..+++..
T Consensus 28 eqDr~LPIANV~RIMK~~ 45 (168)
T KOG0869|consen 28 EQDRFLPIANVSRIMKKA 45 (168)
T ss_pred hhhhhccHHHHHHHHHhc
Confidence 346678888888887764
No 146
>PLN02228 Phosphoinositide phospholipase C
Probab=76.71 E-value=27 Score=25.57 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhCcC----CCCcccHHHHHHHHhh
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALG--LKPTGDQLHILLADMDSN----GNGLVEFDELVALILP 74 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~~ 74 (116)
++..+|..+-. ++.++.++|..+|.... ...+.+.+..++..+... ..+.++.+.|...+..
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 34455666643 35899999999997753 234566788888877543 2356999999888754
No 147
>PLN02222 phosphoinositide phospholipase C 2
Probab=76.45 E-value=25 Score=25.76 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCC-CCCCceeHHHHHHHHHh
Q 033583 42 KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDR-DGNGYITAAELAGSMAI 113 (116)
Q Consensus 42 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~ 113 (116)
..+..++..+|..+.. .+.++.++|..++........ .+.+.+..++..+.. ...+.++.+.|..+|.+
T Consensus 21 ~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~-~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 21 SEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDK-ATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCcc-CCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 4456799999999854 468999999988876665432 355555566665432 34667999999998864
No 148
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=75.56 E-value=13 Score=21.71 Aligned_cols=35 Identities=9% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCC
Q 033583 60 NGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDR 96 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 96 (116)
.+.|+++.|..++..++... ...+-.+.+|..|-.
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d--~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVD--LPEDLCQHLFLSFQK 80 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S----HHHHHHHHHHS--
T ss_pred CCCcCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHhC
Confidence 45799999998887666532 455556667777643
No 149
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=75.18 E-value=9.1 Score=19.40 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 27 LTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
++-.++..++...+..++.+++..+++.-+..+-..++-+.+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3445788888888888999999999888655443344444444443
No 150
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=75.18 E-value=7.8 Score=20.25 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCC
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNG 59 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 59 (116)
..++++...-. ..|+||+.++..+|.. ...+...+..++..+...+
T Consensus 7 ~~i~~Li~~gK--~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 7 EAIKKLIEKGK--KKGYLTYDEINDALPE--DDLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHHHHHHHHHH--HHSS-BHHHHHHH-S---S---HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHh--hcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHHCC
Confidence 34444444432 4789999999999875 3466678888887765443
No 151
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=74.13 E-value=1.3 Score=27.50 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 24 DGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
+|++|..++.-+... .-+.+.=+...|..+|.+++++|+.++|-..+
T Consensus 202 d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 566666655433211 11222334556666777777777777765554
No 152
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=74.04 E-value=5.2 Score=22.59 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 43 PTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
++++..+.++..+-.+..|+|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 56778888888888888889999998877653
No 153
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.02 E-value=5.3 Score=27.35 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 84 QEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 84 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
...++++|+.+|+.+.|+|+..-++.++..++
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 46789999999999999999999988887654
No 154
>PHA02105 hypothetical protein
Probab=73.76 E-value=9 Score=18.71 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=30.7
Q ss_pred cccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCcCCCC--cccHHHHHHHH
Q 033583 26 SLTQLELAALLRALG---LKPTGDQLHILLADMDSNGNG--LVEFDELVALI 72 (116)
Q Consensus 26 ~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~--~i~~~ef~~~~ 72 (116)
+++.++|.+++.+-. .++..+.+..+-..+...+-. .+++++|-+++
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 467788888876532 345555666666666665544 47999987765
No 155
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=71.76 E-value=11 Score=23.08 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=24.5
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCc
Q 033583 20 DMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDS 57 (116)
Q Consensus 20 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 57 (116)
..+.+|+++..++...+..-+..++.+++..+....++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35779999999999998876667888999998876543
No 156
>PLN02230 phosphoinositide phospholipase C 4
Probab=71.72 E-value=38 Score=25.02 Aligned_cols=64 Identities=11% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhCc-------CCCCcccHHHHHHHHhh
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALLRALGL---KPTGDQLHILLADMDS-------NGNGLVEFDELVALILP 74 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~~~~~ 74 (116)
.++..+|..+-.+ .+.++.++|..+|..... ..+.+.+..++..+.. -..+.++.+.|...+..
T Consensus 29 ~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3566778888543 489999999999977532 2355666666654321 12346999999887643
No 157
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=71.53 E-value=19 Score=21.37 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=36.3
Q ss_pred CCCcccHHHHHHHHhhhHH-HhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 59 GNGLVEFDELVALILPDIS-EQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 59 ~~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
....++-..|..++...-- ... .+...+..+|...-..+...|+.++|..+|..+.
T Consensus 15 ~~~~m~~~~F~Kl~kD~~i~d~k-~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 15 NGTEMDSKNFAKLCKDCGIIDKK-LTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp TSSEEEHHHHHHHHHHTSS--SS-S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHcCCCCCC-CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3445777777777643211 111 4667788899887666667799999999988763
No 158
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=71.44 E-value=5 Score=20.06 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=16.0
Q ss_pred hhhCCCCCCceeHHHHHHHHHh
Q 033583 92 RSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 92 ~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
+.+|...+..||.+++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4667777788888888777653
No 159
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=70.26 E-value=15 Score=19.62 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=33.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 22 DLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
+..-.++..+|...|+..-......+...+-..+|...+++||.=||-.+.
T Consensus 18 g~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 18 GKRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp TT-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CCCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 334578888888888876443344555666677888888888877775554
No 160
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=69.35 E-value=16 Score=22.31 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCc
Q 033583 21 MDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDS 57 (116)
Q Consensus 21 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 57 (116)
.+.+|+++.+++...++.-+...+.+.+.++...-++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 4789999999999998765566888999988876543
No 161
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=68.98 E-value=19 Score=20.46 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCC
Q 033583 23 LDGSLTQLELAALLRAL--GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNG 100 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 100 (116)
-||.++..|...+...+ ....+......+...++.......++.+|+..+...... .....-+..++...-.||
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~r~~ll~~l~~ia~ADG-- 111 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSP--EEREDLLRMLIAIAYADG-- 111 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--H--HHHHHHHHHHHHHCTCTT--
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhch--HHHHHHHHHHHHHHhcCC--
Confidence 48888888888776554 223344555565555544434457788887766543332 134455677777776654
Q ss_pred ceeHHH
Q 033583 101 YITAAE 106 (116)
Q Consensus 101 ~i~~~e 106 (116)
.++..|
T Consensus 112 ~~~~~E 117 (140)
T PF05099_consen 112 EISPEE 117 (140)
T ss_dssp C-SCCH
T ss_pred CCCHHH
Confidence 444444
No 162
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.62 E-value=20 Score=24.96 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q 033583 12 LKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVAL 71 (116)
Q Consensus 12 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 71 (116)
..++|..+.+ -+|+|+-..-+..+-. ..+++.-+..++...|++.+|.++-++|.-+
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4556766654 3788887777765533 4677788889999999999999999998543
No 163
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=68.06 E-value=25 Score=21.46 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=8.8
Q ss_pred CCcccHHHHHHHHhhhHH
Q 033583 60 NGLVEFDELVALILPDIS 77 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~ 77 (116)
.|.++..+|..-+..++.
T Consensus 34 ~Gklsm~dFsk~I~~Yme 51 (186)
T PF12983_consen 34 EGKLSMADFSKKIMEYME 51 (186)
T ss_pred cCcccHHHHHHHHHHHHH
Confidence 455555555544444443
No 164
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=67.14 E-value=11 Score=17.18 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcC--CCCCcccHHHHHHHHHH
Q 033583 8 QLKQLKDIFMRFDM--DLDGSLTQLELAALLRA 38 (116)
Q Consensus 8 ~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~ 38 (116)
-+..+..+|.+|.. +....++..+|+..++.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34556677777742 23457888888887764
No 165
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=66.69 E-value=23 Score=21.16 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=47.6
Q ss_pred HHHHHHHHh----cCCCCC-cccHHHHHHHHHHcC----CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHh--
Q 033583 11 QLKDIFMRF----DMDLDG-SLTQLELAALLRALG----LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQ-- 79 (116)
Q Consensus 11 ~l~~~f~~~----d~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~-- 79 (116)
.+.+.|+.| |+..+| .++-.+|..+++..+ ..++.-++...|..+....-+.++|++|..++.......
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k 92 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFK 92 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhhc
Confidence 344455554 333344 577777888877643 345555667777776555567899999966653322110
Q ss_pred hhhhHHHHHHHHhhh
Q 033583 80 VLVNQEQLMEVFRSF 94 (116)
Q Consensus 80 ~~~~~~~~~~~f~~~ 94 (116)
.-...+.+..+.+.+
T Consensus 93 ~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 93 GKSKEEALDAICQLL 107 (180)
T ss_pred CCCHHHHHHHHHHHH
Confidence 012344555555554
No 166
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=66.68 E-value=33 Score=22.39 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=41.8
Q ss_pred CCCCcccHHHHHHHHHHcC--CCCCHHH---HHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCC
Q 033583 22 DLDGSLTQLELAALLRALG--LKPTGDQ---LHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDR 96 (116)
Q Consensus 22 ~~~g~i~~~e~~~~l~~~~--~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~ 96 (116)
.-||.++..|.. +.+.+. ..++.+. +..+|+.- .....++++|+..+.............-+..+|+..=.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~A 142 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFA 142 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 348899999988 334432 3344554 45555443 33447888988877654432211111223444544433
Q ss_pred CCCCceeHHH
Q 033583 97 DGNGYITAAE 106 (116)
Q Consensus 97 ~~~g~i~~~e 106 (116)
||.++..|
T Consensus 143 --DG~l~~~E 150 (267)
T PRK09430 143 --DGSLHPNE 150 (267)
T ss_pred --cCCCCHHH
Confidence 45566655
No 167
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=66.22 E-value=17 Score=30.06 Aligned_cols=56 Identities=11% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 52 LADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 52 ~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
|..||+++.|.|+..+|-.++.. ...-+..++..++.-...|.+...+.++|..-+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~----~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEG----HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhc----cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 45678888888888888777632 122355566666776777777777777776543
No 168
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.18 E-value=15 Score=18.39 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 033583 24 DGSLTQLELAALLRALGLKPTGDQLHILLADM 55 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (116)
+--|+.+.++....+.|..+++..+..+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45788999999999999999999999888764
No 169
>PRK00523 hypothetical protein; Provisional
Probab=65.91 E-value=17 Score=18.71 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 033583 24 DGSLTQLELAALLRALGLKPTGDQLHILLADM 55 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (116)
+--|+.+-++..+.+.|..+++..+.++++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44788889999999999999999999988765
No 170
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.06 E-value=50 Score=24.61 Aligned_cols=80 Identities=25% Similarity=0.349 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhh-----hhhHHHHHHHHhhhCCCCCCc
Q 033583 27 LTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQV-----LVNQEQLMEVFRSFDRDGNGY 101 (116)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~-----~~~~~~~~~~f~~~D~~~~g~ 101 (116)
++.+++. ......++.+..+|..+|. ++|.++-+++..++.....-.. ....+....++...|.+..|.
T Consensus 4 ~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 5666666 2223334566666666665 5666666666655543332111 012233345666777777777
Q ss_pred eeHHHHHHHHH
Q 033583 102 ITAAELAGSMA 112 (116)
Q Consensus 102 i~~~e~~~~l~ 112 (116)
+...++...+.
T Consensus 78 ~~~~~~~~ll~ 88 (646)
T KOG0039|consen 78 ITNEDLEILLL 88 (646)
T ss_pred eeecchhHHHH
Confidence 77666666554
No 171
>PLN02223 phosphoinositide phospholipase C
Probab=65.02 E-value=44 Score=24.33 Aligned_cols=28 Identities=14% Similarity=0.016 Sum_probs=15.7
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 44 TGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 44 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
..+++..+|..+. ++.|.++.+.+..++
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl 41 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFI 41 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHH
Confidence 4456666666663 344556655555444
No 172
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=64.62 E-value=20 Score=19.22 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCc
Q 033583 24 DGSLTQLELAALLRALG--LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGY 101 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~ 101 (116)
||.++..|...+-..+. ...+..+...+...+........++.+|...+...... .....-+..+++..-. ||.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~l~~L~~vA~A--DG~ 88 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDY--EERLELVEALWEVAYA--DGE 88 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHh--cCC
Confidence 78888888776654321 24566677777766655545567888888876543321 1344455666666543 566
Q ss_pred eeHHHHHH
Q 033583 102 ITAAELAG 109 (116)
Q Consensus 102 i~~~e~~~ 109 (116)
++..|-.-
T Consensus 89 ~~~~E~~~ 96 (104)
T cd07313 89 LDEYEEHL 96 (104)
T ss_pred CCHHHHHH
Confidence 77776543
No 173
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=64.50 E-value=32 Score=21.67 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=20.3
Q ss_pred CCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCC
Q 033583 59 GNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNG 100 (116)
Q Consensus 59 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 100 (116)
..|.|+..+....+.+.+......+.+.+..+.+.+.+=+.|
T Consensus 110 ~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 110 NGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp TTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred CCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 345666666666655433222234555555555555444443
No 174
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=64.37 E-value=24 Score=19.89 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q 033583 13 KDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVA 70 (116)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 70 (116)
-..|..+-..++..++..++..+|...+..+...++..++..+.. .+.++++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344555666777789999999999999999988888888877722 45666654
No 175
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.22 E-value=14 Score=28.31 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
.++..+..+...+|..+.++ +|.++-...+-++.. ..+....+..++...|.+.+|.++..+|...++..
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhhhHH
Confidence 36778888888889888776 889999888888755 45566677889999999999999999997766543
No 176
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=63.94 E-value=21 Score=19.16 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHHHHcC-CCCCH---HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCC
Q 033583 24 DGSLTQLELAALLRALG-LKPTG---DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGN 99 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~-~~~~~---~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 99 (116)
||.++..|...+-..+. ...+. ..+...+.... ....++.+|...+.............-+..++...-. |
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--D 87 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGK---ESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--D 87 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--c
Confidence 77888877766543321 22322 34444444332 2226777877776553321112344455666666544 5
Q ss_pred CceeHHHHH
Q 033583 100 GYITAAELA 108 (116)
Q Consensus 100 g~i~~~e~~ 108 (116)
|.++..|-.
T Consensus 88 G~~~~~E~~ 96 (106)
T cd07316 88 GELSEAERE 96 (106)
T ss_pred CCCCHHHHH
Confidence 667777743
No 177
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=63.72 E-value=12 Score=18.49 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHH
Q 033583 26 SLTQLELAALLRALGLKPTGDQLHI 50 (116)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~ 50 (116)
.|+..+|..+|+.....++.+++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4788888888888777777777665
No 178
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=61.39 E-value=16 Score=17.06 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLAD 54 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (116)
.+++.+...|...|.. +.+.+..+...+...++ ++...|...|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 5788888888888876 55788888888777754 666777777754
No 179
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.38 E-value=30 Score=19.82 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHhhCcCC--CCcccHHHHHHHHhhhHH---H--hh----------hhhHHHHHHHHhhhCCCCCCceeH
Q 033583 42 KPTGDQLHILLADMDSNG--NGLVEFDELVALILPDIS---E--QV----------LVNQEQLMEVFRSFDRDGNGYITA 104 (116)
Q Consensus 42 ~~~~~~~~~~~~~~d~~~--~~~i~~~ef~~~~~~~~~---~--~~----------~~~~~~~~~~f~~~D~~~~g~i~~ 104 (116)
.++-..+.++|+....++ +..++..+...++..... + +. ....--+-.++..||++++|.|+.
T Consensus 37 lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~v 116 (127)
T PF09068_consen 37 LVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRV 116 (127)
T ss_dssp G--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEH
T ss_pred eeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeeh
Confidence 355566777777765553 345888887766654441 0 00 111123457889999999999999
Q ss_pred HHHHHHHHhh
Q 033583 105 AELAGSMAII 114 (116)
Q Consensus 105 ~e~~~~l~~~ 114 (116)
-.++..+..+
T Consensus 117 ls~KvaL~~L 126 (127)
T PF09068_consen 117 LSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHh
Confidence 9999888665
No 180
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=60.21 E-value=20 Score=17.64 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=19.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 033583 25 GSLTQLELAALLRALGLKPTGDQLHILLAD 54 (116)
Q Consensus 25 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (116)
-.+|.+++...+..++..++..++..++..
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQ 37 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 356667777777777666666666665544
No 181
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=58.63 E-value=25 Score=18.63 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhhhCCCCCCceeH
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITA 104 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~ 104 (116)
.+..++.++|+.+..+++..++.
T Consensus 56 SS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 56 SSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred cCHHHHHHHHHHHHhcCcccEEE
Confidence 35678899999999888877653
No 182
>PRK01844 hypothetical protein; Provisional
Probab=58.09 E-value=25 Score=18.09 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=27.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 033583 24 DGSLTQLELAALLRALGLKPTGDQLHILLADM 55 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (116)
+--|+.+-++..+.+.|..+++..+..+.+..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44788889999999999999999999988765
No 183
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=56.56 E-value=21 Score=16.74 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLA 53 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 53 (116)
.+|++++..|...|.. +.+++..+...+...+ .++...|...|.
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l--~l~~~~V~~WF~ 49 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKEL--GLTERQVKNWFQ 49 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHH--TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hccccccccccccccc--cccccccccCHH
Confidence 5788999999988874 5677787777777665 455667776664
No 184
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=56.49 E-value=12 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCC
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDL 23 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~ 23 (116)
++||++++.++..-...+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 4689999999998888888754
No 185
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=56.36 E-value=3.3 Score=17.31 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=13.2
Q ss_pred HHHHhhhCCCCCCceeHHH
Q 033583 88 MEVFRSFDRDGNGYITAAE 106 (116)
Q Consensus 88 ~~~f~~~D~~~~g~i~~~e 106 (116)
+.++..-|.|++-.||.++
T Consensus 2 ~~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIED 20 (30)
T ss_pred hhHhhccccCCCcEEEEec
Confidence 3456677888888887654
No 186
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=55.96 E-value=35 Score=19.10 Aligned_cols=55 Identities=13% Similarity=0.314 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 14 DIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
..|..+-..++..++..++..+|...|..+....+..+++.+.. .+..+++..-.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 34555666777799999999999999998888888888877622 46677666543
No 187
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=54.33 E-value=60 Score=23.47 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 5 QSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
....++....+|.++-+.+..-++-.+++.++.+++......+-...|...+.. ...+.+.+++..+.
T Consensus 480 ~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~ 547 (612)
T COG5069 480 VWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIH 547 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccc-cccchHHHHHHHHh
Confidence 344555666778777666566789999999999988766544434444332211 11245555544443
No 188
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.05 E-value=11 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=16.2
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 44 TGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 44 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
.-+.+..+.+..|-|.+|.|+.+|=-.++
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFl 94 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFL 94 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHH
Confidence 34445555555666666666666654444
No 189
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.82 E-value=11 Score=23.06 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=21.5
Q ss_pred cccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHH
Q 033583 62 LVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAG 109 (116)
Q Consensus 62 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 109 (116)
.++|++...++.....+....-.-+...-.+-+|+=.+|.++++|+.+
T Consensus 20 sLsF~QIA~FCglHplEvk~iADGE~aq~IkGldPI~~GQLtreEi~r 67 (230)
T COG3820 20 SLSFDQIADFCGLHPLEVKGIADGEVAQGIKGLDPIANGQLTREEIAR 67 (230)
T ss_pred cccHHHHHHHhCcCcceeeeeccchhhccccCCCccccCcccHHHHHh
Confidence 355555544443322221111222333444555555566666666543
No 190
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=52.54 E-value=1e+02 Score=23.71 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 13 KDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 13 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
.=++..||+.-+|.|..-.|+..+-.+......+.+..+|...-.++ ..++...|-.+++
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~-sq~~q~~l~lLL~ 532 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASST-SQCDQRRLGLLLH 532 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCch-hhHHHHHHHHHHH
Confidence 34567899999999999999988877776666777778888764333 2333555544443
No 191
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.27 E-value=32 Score=17.60 Aligned_cols=33 Identities=9% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 033583 24 DGSLTQLELAALLRALGLKPTGDQLHILLADMD 56 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (116)
+--|+.+-++..+.+.|..+++..+.++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 457888888988889999999999998887653
No 192
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=51.79 E-value=29 Score=16.98 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALG 40 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 40 (116)
.+|+++...|...|...-.- -...+..+...+...+|
T Consensus 7 ~Ft~~Q~~~Le~~fe~~~y~-~~~~~~~~r~~la~~lg 43 (58)
T TIGR01565 7 KFTAEQKEKMRDFAEKLGWK-LKDKRREEVREFCEEIG 43 (58)
T ss_pred CCCHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHHHhC
Confidence 58899999998888554210 00155666666666554
No 193
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=51.15 E-value=10 Score=23.35 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
...+.++++|..||+++-=..+.+++.+.+..-|
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~g 85 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAG 85 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc
Confidence 4677889999999999988899999888876543
No 194
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=50.98 E-value=89 Score=22.30 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCcCC------------------CCcccHHHHHHHHhhhHHHhhhhhHHHH
Q 033583 27 LTQLELAALLRALGLK-PTGDQLHILLADMDSNG------------------NGLVEFDELVALILPDISEQVLVNQEQL 87 (116)
Q Consensus 27 i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~------------------~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 87 (116)
|.+++-...|..+.++ +-.+.+...|..|.... ....+|.+|++....-.+++ .-...+
T Consensus 198 veYeERMe~LeevtyPkPL~e~L~~af~~y~~~hPWv~~~~l~PKSVvRdM~E~amtF~dyV~~YgLaRSEG--vlLRYL 275 (461)
T PF12029_consen 198 VEYEERMERLEEVTYPKPLAELLEAAFETYRRGHPWVGDFELSPKSVVRDMYERAMTFSDYVSRYGLARSEG--VLLRYL 275 (461)
T ss_pred CCHHHHHHHHhhCCCCCchHHHHHHHHHHHHhcCCcccCCCCCcchHHHHHHHhhCCHHHHHHHhCcchhhh--HHHHHH
Confidence 6677777777777654 44567777887764321 13478888888876655554 344455
Q ss_pred HHHHhhhC
Q 033583 88 MEVFRSFD 95 (116)
Q Consensus 88 ~~~f~~~D 95 (116)
-.+|+.+.
T Consensus 276 sDAyraL~ 283 (461)
T PF12029_consen 276 SDAYRALR 283 (461)
T ss_pred HHHHHHHh
Confidence 55555553
No 195
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=50.39 E-value=20 Score=14.88 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=7.1
Q ss_pred CCceeHHHHHHHH
Q 033583 99 NGYITAAELAGSM 111 (116)
Q Consensus 99 ~g~i~~~e~~~~l 111 (116)
.|.||.+||...-
T Consensus 14 ~G~IseeEy~~~k 26 (31)
T PF09851_consen 14 KGEISEEEYEQKK 26 (31)
T ss_pred cCCCCHHHHHHHH
Confidence 4556666665543
No 196
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=50.38 E-value=69 Score=20.86 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAAL 35 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~ 35 (116)
.||-.+++.++.++..++.+ +|.++..++...
T Consensus 176 tLSySEleAv~~IL~~L~~~-egrlse~eLAer 207 (251)
T TIGR02787 176 TLSYSELEAVEHIFEELDGN-EGLLVASKIADR 207 (251)
T ss_pred hccHhHHHHHHHHHHHhccc-cccccHHHHHHH
Confidence 34555555555555555321 355555554443
No 197
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=49.91 E-value=32 Score=16.93 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=12.3
Q ss_pred ccHHH-HHHHHHHHHHhcCCCCC
Q 033583 4 VQSEQ-LKQLKDIFMRFDMDLDG 25 (116)
Q Consensus 4 l~~~~-~~~l~~~f~~~d~~~~g 25 (116)
||..+ +.-+..++..++.+...
T Consensus 3 L~~~ERl~Lve~LwdSL~~~~~~ 25 (63)
T TIGR02574 3 LSPDERIQLVEDIWDSIAAEAKH 25 (63)
T ss_pred CCHHHHHHHHHHHHHHhccCccc
Confidence 44433 34557777777754433
No 198
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.82 E-value=33 Score=19.73 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=6.2
Q ss_pred HHHHHhhhCCCCCC
Q 033583 87 LMEVFRSFDRDGNG 100 (116)
Q Consensus 87 ~~~~f~~~D~~~~g 100 (116)
+..+|+.-|+.+.|
T Consensus 80 yehLFevNdkskGG 93 (132)
T KOG3442|consen 80 YEHLFEVNDKSKGG 93 (132)
T ss_pred HHHHHhccCcccCc
Confidence 34444444444433
No 199
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=48.97 E-value=48 Score=18.69 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=38.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q 033583 14 DIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVA 70 (116)
Q Consensus 14 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 70 (116)
..|...-..++..++..++..+|...+..+...++..++..+.. .+..+++.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34445555677789999999999999988888888888877732 45666553
No 200
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=48.70 E-value=21 Score=14.92 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=5.7
Q ss_pred eeHHHHHHHHH
Q 033583 102 ITAAELAGSMA 112 (116)
Q Consensus 102 i~~~e~~~~l~ 112 (116)
||.+||+.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66666666654
No 201
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=47.61 E-value=24 Score=14.88 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=6.3
Q ss_pred CceeHHHHHHHHH
Q 033583 100 GYITAAELAGSMA 112 (116)
Q Consensus 100 g~i~~~e~~~~l~ 112 (116)
|.|+.+++..+..
T Consensus 3 ~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 3 GTISKEEYLDMAS 15 (33)
T ss_pred ceecHHHHHHHHH
Confidence 4455555544443
No 202
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=47.01 E-value=61 Score=19.27 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 033583 7 EQLKQLKDIFMRFDMDLDGSLTQLELAALLRA 38 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 38 (116)
..+..+......+|..+.+|+|..+++.++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 34455666666777778888999999988743
No 203
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=45.89 E-value=47 Score=17.70 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=5.7
Q ss_pred CCcccHHHHHHH
Q 033583 60 NGLVEFDELVAL 71 (116)
Q Consensus 60 ~~~i~~~ef~~~ 71 (116)
+|.|+-+++-.+
T Consensus 27 n~~it~E~y~~V 38 (85)
T cd08324 27 NDYFSTEDAEIV 38 (85)
T ss_pred cCCccHHHHHHH
Confidence 344555555443
No 204
>PF13551 HTH_29: Winged helix-turn helix
Probab=42.71 E-value=55 Score=17.52 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-H-HcCCCCCHHHHHHHHH
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALL-R-ALGLKPTGDQLHILLA 53 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~-~~~~~~~~~~~~~~~~ 53 (116)
+++++...+.+.+......+.+..+...+...+ . ..+..++...+..++.
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~ 109 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILK 109 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHH
Confidence 555666665555554433322345555665543 2 2344555555555543
No 205
>PF14713 DUF4464: Domain of unknown function (DUF4464)
Probab=42.18 E-value=94 Score=20.06 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHhhCcCCC-CcccHHHHHHH
Q 033583 43 PTGDQLHILLADMDSNGN-GLVEFDELVAL 71 (116)
Q Consensus 43 ~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~ 71 (116)
+...++...+..+...+. +.++.++|.+.
T Consensus 28 L~~~~~ar~LveLGyr~~g~vl~~eeF~~r 57 (233)
T PF14713_consen 28 LEDEELARQLVELGYRGTGEVLSREEFEAR 57 (233)
T ss_pred cCCHHHHHHHHHcCCCCCCcccCHHHHHHH
Confidence 344444444444444444 34677777554
No 206
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=41.97 E-value=1.2e+02 Score=23.74 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHh---hhCCCCCCceeHHHHHHHHHh
Q 033583 46 DQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFR---SFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 46 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~---~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.++...++..+....+..+.++|+..+.. .+.........+...|+ .-|+..-|.++..+|...|..
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lms-lg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMS-LGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHh-cCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 45666777788777788999999887532 12111111222333443 445566688999999888754
No 207
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=41.61 E-value=38 Score=17.92 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=15.3
Q ss_pred cccHHHHHHHHHHHHHhcCCCCC
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDG 25 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g 25 (116)
+||++|++.+++++..- ++++|
T Consensus 51 ~lTpDQVrAlHRlvTsS-pe~d~ 72 (92)
T PHA02681 51 KMTDDQVRAFHALVTSS-PEDDP 72 (92)
T ss_pred cCCHHHHHHHHHHHhCC-CCCCC
Confidence 58889999888877544 44443
No 208
>cd08310 Death_NFkB-like Death domain of Nuclear Factor-KappaB precursor proteins. Death Domain (DD) of Nuclear Factor-KappaB (NF-kB) precursor proteins. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). Two of these, NF-kB1 and NF-kB2 are produced from the processing of the precursor proteins p105 and p100, respectively. In addition to RHD, p105 and p100 contain ANK repeats and a C-terminal DD. NF-kBs are regulated by the Inhibitor of NF-kB (IkB) Kinase (IKK) complex through classical and non-canonical pathways, which differ in the IKK subunits involved and downstream targets. IKKs facilitate the release of NF-kB dimers from an inactive state, allowing them to migrate to the nucleus where they regulate gene transcription. The precursor proteins p105 and p100 function
Probab=41.46 E-value=51 Score=16.81 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=14.8
Q ss_pred HHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 88 MEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 88 ~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
..++..|...+ -|.+.+..+|..+|
T Consensus 39 ~~LL~~we~~~---~tv~~L~~~L~~mg 63 (72)
T cd08310 39 KMLLDYFEMQG---GTLERLRDALEVLG 63 (72)
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHHcC
Confidence 44445554333 46677777777776
No 209
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.37 E-value=76 Score=18.81 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=49.9
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHh
Q 033583 15 IFMRFDMDLDGSLTQLELAALLRAL--GLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFR 92 (116)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~ 92 (116)
+|... +-||.++..|...+..-+ ...++...+..+......-+...+++-.|.+.+.+.+... ...+-+..+++
T Consensus 35 lf~Vm--~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e--~R~eli~~mwe 110 (148)
T COG4103 35 LFHVM--EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEE--QRLELIGLMWE 110 (148)
T ss_pred HHHHH--hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHH
Confidence 34444 346666666655443222 3456667777777665544556788888888876555432 23333444444
Q ss_pred hhCCCCCCceeHHHHHHHH
Q 033583 93 SFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 93 ~~D~~~~g~i~~~e~~~~l 111 (116)
.. ..||.++.-|-+-++
T Consensus 111 Ia--~ADg~l~e~Ed~vi~ 127 (148)
T COG4103 111 IA--YADGELDESEDHVIW 127 (148)
T ss_pred HH--HccccccHHHHHHHH
Confidence 43 345556655544333
No 210
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.91 E-value=44 Score=25.52 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCc------eeHHHHHHHHHhhCC
Q 033583 48 LHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGY------ITAAELAGSMAIIGN 116 (116)
Q Consensus 48 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~------i~~~e~~~~l~~~g~ 116 (116)
+..+++.||...+|.|..-+|.-.+..... ....+.++.+|...-..+.-. +-..++.++.+.+||
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck---~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE 543 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCK---AHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGE 543 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhc---chhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 455778899999998888777655433222 245667788998874444332 335566677777664
No 211
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=40.09 E-value=50 Score=16.29 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 90 VFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
+++.++.+....++.++...-....|
T Consensus 9 v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 9 VLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 33444444444455555555444443
No 212
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=39.93 E-value=69 Score=17.91 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHhcCCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q 033583 17 MRFDMDLDGSLTQLELAALLRA----------LGLKPTGDQLHILLADMDSNGNGLVEFDELVAL 71 (116)
Q Consensus 17 ~~~d~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 71 (116)
+.||...+.+|+.+++..++.. .|..++..-+-.+..+-...+...++..=+.++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~ql 74 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQI 74 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3578889999999999999874 233355555556665555555555555444333
No 213
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=39.43 E-value=87 Score=18.90 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=12.7
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 85 EQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 85 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.+++..++.-..-.+..+..++|..++..
T Consensus 57 ~eIk~~~~~~~~~~~~~~d~~~~~~~~~~ 85 (163)
T PF09888_consen 57 HEIKNMYRSGSFIEDFEIDEEEFKEFLNM 85 (163)
T ss_pred HHHHHhhcCCCCcccccCCHHHHHHHHHH
Confidence 33333333333333333555555555544
No 214
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=39.38 E-value=35 Score=16.77 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.9
Q ss_pred HHhcCCCCCcccHHHHHHH
Q 033583 17 MRFDMDLDGSLTQLELAAL 35 (116)
Q Consensus 17 ~~~d~~~~g~i~~~e~~~~ 35 (116)
...+.+++|+|+...+..+
T Consensus 22 ~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 22 SQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHCTTTTTBEEHHHHTTS
T ss_pred HHHHhcCCCcEeHHHHHch
Confidence 3455666777777666644
No 215
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=39.27 E-value=80 Score=18.46 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCCcccHHHHHHHHhhhHHHhhhhhHHHH-HHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 59 GNGLVEFDELVALILPDISEQVLVNQEQL-MEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 59 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~-~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+....+.++|+.-+....+...-...+.+ +..|+.. +.-|+.+++..+...+
T Consensus 72 ~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL----~r~Is~gei~~v~s~L 124 (135)
T COG5502 72 PKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVL----KRHISPGEIDKVRSRL 124 (135)
T ss_pred CCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH----HHhCCHHHHHHHHHHC
Confidence 45578999998776655542222233333 3677777 3447778877776654
No 216
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=38.95 E-value=1.2e+02 Score=20.42 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=34.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLAD 54 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (116)
.||..++.+|++.|.+. -||+..+=..+-..+ ++++..|+.+|..
T Consensus 178 aFT~~Ql~~LEkrF~~Q-----KYLS~~DR~~LA~~L--gLTdaQVKtWfQN 222 (309)
T KOG0488|consen 178 AFSDHQLFELEKRFEKQ-----KYLSVADRIELAASL--GLTDAQVKTWFQN 222 (309)
T ss_pred hhhHHHHHHHHHHHHHh-----hcccHHHHHHHHHHc--CCchhhHHHHHhh
Confidence 47888999999988654 388888888877775 4677788887754
No 217
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=38.64 E-value=85 Score=23.32 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=45.6
Q ss_pred HHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 49 HILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 49 ~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
...|..+|.+..+.++..+.+..+...- .....+.+.+..+..|...+|.+...||.+++..+
T Consensus 596 ~~rf~~lD~~k~~~~~i~~v~~vlk~~~---~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 596 KTRFAFLDADKKAYQAIADVLKVLKSEN---VGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 3466677888888888888877765422 12355667777788888889999999988877654
No 218
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=38.35 E-value=1e+02 Score=19.29 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=29.6
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhH
Q 033583 16 FMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPDI 76 (116)
Q Consensus 16 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~ 76 (116)
...++|.....=..+++.+.|..-+.-.-.+.+...+..++....+.-.|+.|...++.++
T Consensus 128 It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~fa~~l 188 (194)
T PF07199_consen 128 ITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCFADYL 188 (194)
T ss_pred HHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHHHHHH
Confidence 3345555555555666666655443222334444444444433333445555555554433
No 219
>PLN02223 phosphoinositide phospholipase C
Probab=38.13 E-value=1.6e+02 Score=21.65 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHH---HHc-C-CCCCHHHHHHHHHhhCcC--------CCCcccHHHHHHHHhh
Q 033583 10 KQLKDIFMRFDMDLDGSLTQLELAALL---RAL-G-LKPTGDQLHILLADMDSN--------GNGLVEFDELVALILP 74 (116)
Q Consensus 10 ~~l~~~f~~~d~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~~~~ 74 (116)
..+..+|..+- .+.|.++...+..++ ... + ...+.++...++..+-.. ..+.++.+.|...+..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 34566687773 667889988888887 332 2 345666666666654322 1245899999887744
No 220
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=36.18 E-value=41 Score=14.20 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=9.9
Q ss_pred ceeHHHHHHHHHhhC
Q 033583 101 YITAAELAGSMAIIG 115 (116)
Q Consensus 101 ~i~~~e~~~~l~~~g 115 (116)
.++..+++..|+..|
T Consensus 3 ~l~~~~Lk~~l~~~g 17 (35)
T smart00513 3 KLKVSELKDELKKRG 17 (35)
T ss_pred cCcHHHHHHHHHHcC
Confidence 356677777777654
No 221
>PF14164 YqzH: YqzH-like protein
Probab=35.85 E-value=63 Score=16.24 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=13.1
Q ss_pred HHHHHhhhCCC-CCCceeHHHHHHHHH
Q 033583 87 LMEVFRSFDRD-GNGYITAAELAGSMA 112 (116)
Q Consensus 87 ~~~~f~~~D~~-~~g~i~~~e~~~~l~ 112 (116)
++.+|+++..| ..-+++..|+..++.
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~~ 36 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELCK 36 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHHH
Confidence 34455555544 344455555555444
No 222
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=35.62 E-value=41 Score=14.34 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=9.7
Q ss_pred eeHHHHHHHHHhhC
Q 033583 102 ITAAELAGSMAIIG 115 (116)
Q Consensus 102 i~~~e~~~~l~~~g 115 (116)
++..|++..|+..|
T Consensus 4 l~v~eLk~~l~~~g 17 (35)
T PF02037_consen 4 LTVAELKEELKERG 17 (35)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHCC
Confidence 56677777777665
No 223
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=34.45 E-value=86 Score=17.40 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHh
Q 033583 27 LTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALIL 73 (116)
Q Consensus 27 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 73 (116)
++..++..+|...+..+....+..+...+. | .+.++++....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHHHH
Confidence 999999999999999999888888887762 2 46677765543
No 224
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=33.90 E-value=1.5e+02 Score=20.10 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 60 NGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
.|.|+.+|=+..+...-.. ...+.++..++.++ ||.+||..++
T Consensus 300 ~G~itReeal~~v~~~d~~---~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGE---FPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhccc---ccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4778888877776553222 23455666666666 4555565543
No 225
>PRK01381 Trp operon repressor; Provisional
Probab=33.85 E-value=80 Score=17.42 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAAL 35 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~ 35 (116)
+|+++...+...+..+..=-.|.+|..++...
T Consensus 33 lTp~Er~al~~R~~I~~~L~~g~~sQREIa~~ 64 (99)
T PRK01381 33 LTPDEREALGTRVRIVEELLRGELSQREIKQE 64 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH
Confidence 45566666655555554333455555555544
No 226
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=33.78 E-value=36 Score=15.32 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=11.6
Q ss_pred CCCCCCceeHHHHHHHHH
Q 033583 95 DRDGNGYITAAELAGSMA 112 (116)
Q Consensus 95 D~~~~g~i~~~e~~~~l~ 112 (116)
+....|.++.+++++.+.
T Consensus 7 ~g~~~GP~s~~el~~l~~ 24 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLIS 24 (45)
T ss_pred CCeEECCcCHHHHHHHHH
Confidence 344567777777776654
No 227
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=33.74 E-value=1.9e+02 Score=21.16 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHcCCCCCHHHHHH---HHHhhCcCCCCcccHHHHHHHHhh
Q 033583 3 MVQSEQLKQLKDIFMRFD-MDLDGSLTQLELAALLRALGLKPTGDQLHI---LLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~---~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+|.++-+..|.++|+..- +-+|-=|+.+.+..+=. +|..+++++.+. ++..|- .|.|+=+++.--++.
T Consensus 82 qfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~g~~~~~~~~e~lr~~lh~yk---kg~idgddl~~eia~ 153 (533)
T TIGR00470 82 QFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-LGIDIDDEKKERLREVFHLYK---KGAIDGDDLVFEIAK 153 (533)
T ss_pred hhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-hCCCCChhHHHHHHHHHHHhh---cCCCccchhHHHHHH
Confidence 456677777778777653 33565677777777644 887777665444 555553 456666666544443
No 228
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=33.46 E-value=1.3e+02 Score=19.02 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhh
Q 033583 7 EQLKQLKDIFMRFDMDLDGSLTQLELAALLRALG---LKPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVN 83 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~ 83 (116)
+.-.++.+++...-..+.|.|+..++...+.... ..++++++..+...+.+-+.| +....|-+-.......+ ...
T Consensus 94 ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~-~~e 171 (223)
T PF04157_consen 94 ELAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVP-YSE 171 (223)
T ss_dssp HHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST--CH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCC-chh
Confidence 3445677777766556678999999999987753 256888888888888776654 22211110000000000 001
Q ss_pred H-HHHHHHHhhhCCCCCCceeHHHHHHHH
Q 033583 84 Q-EQLMEVFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 84 ~-~~~~~~f~~~D~~~~g~i~~~e~~~~l 111 (116)
. .....+.........|.+|..++..-+
T Consensus 172 ~~~~~~~il~~~~~~~~g~vt~~~l~~~~ 200 (223)
T PF04157_consen 172 LSKDQSRILELAEEENGGGVTASELAEKL 200 (223)
T ss_dssp H-HHHHHHHHHH--TTTSEEEHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 1 222334444435566788888877654
No 229
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=32.74 E-value=64 Score=15.38 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=20.1
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 033583 23 LDGSLTQLELAALLRALGLKPTGDQLHILL 52 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 52 (116)
..|.|+..||-.-+.......+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 367888888887776655555556666555
No 230
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=32.50 E-value=61 Score=20.30 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=18.3
Q ss_pred HHhhhCCCCCCceeHHHHHHHHHh
Q 033583 90 VFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
++.-+|.+++|.++.+|+..+...
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHH
Confidence 344678899999999888877654
No 231
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=32.03 E-value=71 Score=15.69 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHhhCcC-CCCcccHHHHHHHH
Q 033583 43 PTGDQLHILLADMDSN-GNGLVEFDELVALI 72 (116)
Q Consensus 43 ~~~~~~~~~~~~~d~~-~~~~i~~~ef~~~~ 72 (116)
++-+.++.+++-+-.. +...++.+++.+++
T Consensus 12 l~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL 42 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDPGGYDISLEELQEFL 42 (60)
T ss_dssp EEHHHHHHHHHHH-GGG--TT--HHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCCCCCCCHHHHHHHH
Confidence 4445555555555111 22234555554444
No 232
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=30.56 E-value=79 Score=16.68 Aligned_cols=46 Identities=17% Similarity=0.046 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHH
Q 033583 27 LTQLELAALLRAL-GLKPTGDQLHILLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 27 i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
=+...=..+|..- |..++.+-.+.+-..++...+..|+++|+|...
T Consensus 29 HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 29 HPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3343344555554 344554444444444555556679999988763
No 233
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=30.54 E-value=78 Score=15.73 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCC
Q 033583 23 LDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNG 59 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 59 (116)
.++-++..++...+...+..+++..+...++..+.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3456777777777777677777777777777765543
No 234
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=30.52 E-value=2.2e+02 Score=21.87 Aligned_cols=54 Identities=17% Similarity=0.345 Sum_probs=32.2
Q ss_pred HHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 50 ILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 50 ~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.+|+...+.+...+..+++...+ ..+.+..++..++...++.||++.|......
T Consensus 408 ~iF~nv~~p~~~~i~ld~~~~f~----------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 408 KIFKNVAKPGVILIDLDDLLRFM----------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHhccCCCCccchhhhhhhhcC----------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 34444444444445555554443 4556777888887765555998888765543
No 235
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=30.36 E-value=2.2e+02 Score=20.93 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHcCCCCCHHH---HHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 3 MVQSEQLKQLKDIFMRFD-MDLDGSLTQLELAALLRALGLKPTGDQ---LHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d-~~~~g~i~~~e~~~~l~~~~~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
+|.++-+..|.++|+..- +-+|-=|+.+.+..+=.-+|..++.+. +.+++..|- .|.|+=+++.--++.
T Consensus 82 qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~yk---kg~~~gddl~~e~~~ 154 (529)
T PRK06253 82 QFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYK---KGEIDGDDLVLEISK 154 (529)
T ss_pred hhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhh---cCCCccchhHHHHHH
Confidence 456666777777777653 334556777777776444777777666 555555553 456666666544443
No 236
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=30.36 E-value=74 Score=19.63 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=28.9
Q ss_pred cCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCc
Q 033583 20 DMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDS 57 (116)
Q Consensus 20 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 57 (116)
...+||+++..++.+.=+.-+.+.+.+++..+...-|+
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 45789999999998875555667778888888876544
No 237
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=29.59 E-value=71 Score=18.89 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCCc
Q 033583 5 QSEQLKQLKDIFMRFDMDLDGS 26 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g~ 26 (116)
|+.++.++..+|..++.++++.
T Consensus 45 T~~qi~rLe~if~~lg~~~~~~ 66 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEGK 66 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCccC
Confidence 5678889999999998776653
No 238
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=29.40 E-value=96 Score=23.74 Aligned_cols=20 Identities=35% Similarity=0.684 Sum_probs=15.7
Q ss_pred HHHHHHHhhhCCCCCCceeH
Q 033583 85 EQLMEVFRSFDRDGNGYITA 104 (116)
Q Consensus 85 ~~~~~~f~~~D~~~~g~i~~ 104 (116)
..+.+....||+|+||.|.-
T Consensus 587 ~~ime~l~~fDKD~DGmIEN 606 (879)
T KOG2119|consen 587 YAIMEYLEQFDKDNDGMIEN 606 (879)
T ss_pred HHHHHHHHhhcccCCccccc
Confidence 34447889999999999853
No 239
>PF09127 Leuk-A4-hydro_C: Leukotriene A4 hydrolase, C-terminal; InterPro: IPR015211 This C-terminal domain is found in peptidases belonging to MEROPS peptidase family M1, particularly: aminopeptidase-1 of Caenorhabditis elegans, aminopeptidase O, aminopeptidase B and the bifunctional leukotriene A4 hydrolase/aminopeptidase. The domain adopts a structure consisting of two layers of parallel alpha-helices, five in the inner layer and four in the outer, arranged in an antiparallel manner, with perpendicular loops containing short helical segments on top. It is required for the formation of a deep cleft harbouring the catalytic Zn2+ site in leukotriene A4 hydrolase []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0019370 leukotriene biosynthetic process; PDB: 3FUJ_A 3FU3_A 3FTX_A 3FTS_A 3B7R_L 2VJ8_A 3FTW_A 3FUF_A 3FU0_A 3CHO_A ....
Probab=29.39 E-value=1.2e+02 Score=17.65 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLR 37 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~ 37 (116)
+++..+..+.+.| .+...+|..|-..-+.-+++
T Consensus 49 l~~~~l~~Ld~~y-~l~~s~NaEI~~rW~~l~i~ 81 (143)
T PF09127_consen 49 LSPEKLQALDKVY-KLSNSKNAEIRFRWLRLAIK 81 (143)
T ss_dssp -CHHHHHHHHHHH-CHCT-SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHh
Confidence 5556666666655 44444555555555554444
No 240
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=29.21 E-value=24 Score=18.45 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=10.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHH
Q 033583 26 SLTQLELAALLRALGLKPTGDQLHILL 52 (116)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~ 52 (116)
.=+..+|-++|..+|..+.+..++-++
T Consensus 40 k~~~p~fPkFLn~LGteIiEnAVefiL 66 (88)
T PF15144_consen 40 KNPEPDFPKFLNLLGTEIIENAVEFIL 66 (88)
T ss_pred CCCCCchHHHHHHhhHHHHHHHHHHHH
Confidence 333334444444444333333333333
No 241
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=28.75 E-value=34 Score=19.07 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=11.2
Q ss_pred CCceeHHHHHHHHHhhC
Q 033583 99 NGYITAAELAGSMAIIG 115 (116)
Q Consensus 99 ~g~i~~~e~~~~l~~~g 115 (116)
.|.|+.+||..++..++
T Consensus 27 ~~~is~~ef~~iI~~IN 43 (118)
T PF10256_consen 27 SGYISPEEFEEIINTIN 43 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 55677777777766653
No 242
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=28.63 E-value=1.7e+02 Score=18.92 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcC-CCCcccHHHHHHHHh
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSN-GNGLVEFDELVALIL 73 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~~~i~~~ef~~~~~ 73 (116)
+|+++..++...+.. ..|...-........|..+++.++......+... ....+++++|...+.
T Consensus 19 ~~~~~~~~~~~~~~~------~lI~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~~G~~~~~~r~~ir 83 (256)
T TIGR02933 19 LSPDQLQQFDQAWQR------QRHIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDEQALDAAERRAMLA 83 (256)
T ss_pred CCHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555555555433322 2333333344446678888888885554333111 112368888876554
No 243
>PF14473 RD3: RD3 protein
Probab=28.30 E-value=1.3e+02 Score=17.58 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLAD 54 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (116)
+++.+..+|..+|.+..+...|.+=. .|+.++.. ..+...++-.+|+.
T Consensus 72 i~~~ErlqLE~lCski~P~~~g~vI~-RFRellae--~e~~~~Ev~~iFr~ 119 (133)
T PF14473_consen 72 ISPGERLQLEDLCSKIPPCECGPVIS-RFRELLAE--NEPEVWEVPRIFRS 119 (133)
T ss_pred CCHHHHHHHHHHHhcCChhhhHHHHH-HHHHHHHc--cCCCHHHHHHHHHH
Confidence 56666666666676666665553321 34444333 34445555555543
No 244
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=28.08 E-value=71 Score=19.29 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=11.0
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHH
Q 033583 44 TGDQLHILLADMDSNGNGLVEFDELVAL 71 (116)
Q Consensus 44 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 71 (116)
+...+..++..+..++...++.++|-..
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~ 110 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKA 110 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHH
Confidence 4445555554443333333444444433
No 245
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=28.07 E-value=61 Score=17.76 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=10.6
Q ss_pred CCcccHHHHHHHHhhh
Q 033583 60 NGLVEFDELVALILPD 75 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~ 75 (116)
+|.|+.++|...+...
T Consensus 38 ~~~i~~EeF~~~Lq~~ 53 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQEE 53 (96)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 5778888888776543
No 246
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=27.90 E-value=1.7e+02 Score=21.22 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=16.6
Q ss_pred HHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 86 QLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 86 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
.+..+|+..|.++=--|+..|++.++.-+
T Consensus 129 vL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 129 VLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred HHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 34556666666555556666666655544
No 247
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=27.11 E-value=2.2e+02 Score=19.78 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=38.2
Q ss_pred HHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhh
Q 033583 17 MRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVALILPD 75 (116)
Q Consensus 17 ~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 75 (116)
..+|+.+.|.++.--.+.++..+......+.+.-+|... .+.+|.+.+-.|..++...
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHH
Confidence 446788888888888888777765554556677777766 3446655555555555443
No 248
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=26.86 E-value=1.3e+02 Score=19.47 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=19.3
Q ss_pred CCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCC
Q 033583 60 NGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNG 100 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g 100 (116)
...++-++.... ......+.....+.+..+++.......|
T Consensus 22 ~NvLS~~El~~~-~~L~~~GkiLeg~~Ld~aL~~~~~~~~~ 61 (256)
T PF14932_consen 22 SNVLSEEELQAF-EELQKSGKILEGEALDEALKTISAFSPK 61 (256)
T ss_pred hccCCHHHHHHH-HHHHHcCCcCCHHHHHHHHHHcccccCC
Confidence 345555555443 1112222234555666666666655444
No 249
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.53 E-value=71 Score=26.76 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
..+.+.+++..+|++.+|.|...++..+++.+
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L 1446 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL 1446 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhc
Confidence 45678889999999999999999999999876
No 250
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=26.21 E-value=92 Score=15.11 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 033583 4 VQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMD 56 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 56 (116)
||+.....+..+|.... ..+.++..++...| ..+...+..++..+.
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L~ 47 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRLA 47 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHHH
Confidence 66777778888887775 56778887777764 345566666666653
No 251
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=26.18 E-value=1.2e+02 Score=16.47 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=11.8
Q ss_pred CCcccHHHHHHHHhhhH
Q 033583 60 NGLVEFDELVALILPDI 76 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~ 76 (116)
+|.|+.+||...+....
T Consensus 37 ~~~i~~EeF~~~Lq~~l 53 (92)
T smart00549 37 NGTITAEEFTSRLQEAL 53 (92)
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 57788888877765443
No 252
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.87 E-value=67 Score=18.81 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=13.9
Q ss_pred CcCCCCcccHHHHHHHHh
Q 033583 56 DSNGNGLVEFDELVALIL 73 (116)
Q Consensus 56 d~~~~~~i~~~ef~~~~~ 73 (116)
..+..|..+|++||+.+.
T Consensus 82 ~~~qsGqttF~ef~~~la 99 (137)
T COG5562 82 RRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHhcCCccHHHHHHHHH
Confidence 345578899999998864
No 253
>TIGR01345 malate_syn_G malate synthase G. This model describes the G isozyme of malate synthase. Isocitrate synthase and malate synthase form the glyoxylate shunt, which generates additional TCA cycle intermediates.
Probab=25.86 E-value=2.3e+02 Score=21.69 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
...+.+......|-.+..|.++..+.+.+|+.+|
T Consensus 53 ~~r~~lq~~id~wh~~~~~~~d~~~y~~fl~~ig 86 (721)
T TIGR01345 53 AERDEIQAAIDEWHRSNPGPIDKAAYKSFLREIG 86 (721)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcC
Confidence 4556666666666666667799999999999987
No 254
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=25.73 E-value=1.6e+02 Score=17.94 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=14.4
Q ss_pred cccHHHHHHHHHHHHHhcC
Q 033583 3 MVQSEQLKQLKDIFMRFDM 21 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~ 21 (116)
.++++.+.++.++...+..
T Consensus 15 ~~~~~~~~~i~~ii~~~~~ 33 (169)
T PRK07571 15 PSGDKRFKVLEATMKRNQY 33 (169)
T ss_pred cCcHHHHHHHHHHHHHcCC
Confidence 4678888888888887754
No 255
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=25.66 E-value=1e+02 Score=15.34 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=10.3
Q ss_pred CCcccHHHHHHHHHHHHHhcC
Q 033583 1 MVMVQSEQLKQLKDIFMRFDM 21 (116)
Q Consensus 1 ~~~l~~~~~~~l~~~f~~~d~ 21 (116)
|+.||+.+.+-+.-+-...+.
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~ 21 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEE 21 (65)
T ss_dssp -----HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 667888887777665555543
No 256
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=25.25 E-value=47 Score=15.64 Aligned_cols=20 Identities=10% Similarity=0.333 Sum_probs=11.3
Q ss_pred CcccHHHHHHH-HHHHHHhcC
Q 033583 2 VMVQSEQLKQL-KDIFMRFDM 21 (116)
Q Consensus 2 ~~l~~~~~~~l-~~~f~~~d~ 21 (116)
+++|++++.+- .++...+||
T Consensus 13 ~~MS~eEI~~er~eL~~~LdP 33 (49)
T PF08621_consen 13 ASMSPEEIEEEREELLESLDP 33 (49)
T ss_pred HhCCHHHHHHHHHHHHHhCCH
Confidence 35677777543 445555654
No 257
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=25.17 E-value=1.7e+02 Score=17.89 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=19.9
Q ss_pred CCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhh
Q 033583 60 NGLVEFDELVALILPDISEQVLVNQEQLMEVFRSF 94 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~ 94 (116)
..+++.++|+..+...-. ....+.+.+..+|...
T Consensus 147 ~~kmt~~~Fi~~~~~~~~-~~~~~~~~L~~iY~~I 180 (185)
T cd00171 147 KKKMTLEDFIKNLRGIND-GEDFPREFLKELYDSI 180 (185)
T ss_pred CCCCCHHHHHHHHhcccC-CCCCCHHHHHHHHHHH
Confidence 356788888877643222 2235566666666554
No 258
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=25.15 E-value=1.3e+02 Score=18.05 Aligned_cols=14 Identities=14% Similarity=0.536 Sum_probs=6.0
Q ss_pred ccHHHHHHHHHHHH
Q 033583 4 VQSEQLKQLKDIFM 17 (116)
Q Consensus 4 l~~~~~~~l~~~f~ 17 (116)
|++++..++.....
T Consensus 40 lgeeEfeef~~lLK 53 (162)
T PF12207_consen 40 LGEEEFEEFKELLK 53 (162)
T ss_dssp S-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44555554444443
No 259
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=25.12 E-value=1.1e+02 Score=15.73 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=22.4
Q ss_pred hHHHHHHHHhhhCCCCCCceeHHHHHHHHHhhCC
Q 033583 83 NQEQLMEVFRSFDRDGNGYITAAELAGSMAIIGN 116 (116)
Q Consensus 83 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~g~ 116 (116)
..+.++.+|...-. .+..|..|...+...+|.
T Consensus 37 ~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG~ 68 (71)
T PF06569_consen 37 KYEDLKDIYEMVMS--KDSFSPSEMQAIAEELGQ 68 (71)
T ss_pred hHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHh
Confidence 45566666666533 556888898888888874
No 260
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=24.86 E-value=77 Score=22.44 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=20.4
Q ss_pred CcccHHHHH-HHHHHHHHhcC-CCCCcccHH
Q 033583 2 VMVQSEQLK-QLKDIFMRFDM-DLDGSLTQL 30 (116)
Q Consensus 2 ~~l~~~~~~-~l~~~f~~~d~-~~~g~i~~~ 30 (116)
..||++|.+ +..++|..||+ ..+|.|..+
T Consensus 405 ~~mt~eeke~ea~~l~~lf~rl~~~g~i~~~ 435 (446)
T PF10165_consen 405 PEMTEEEKEREAERLFVLFDRLEKTGVIQVQ 435 (446)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCcCcc
Confidence 357777774 67888888875 467888763
No 261
>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.75 E-value=79 Score=15.99 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=16.4
Q ss_pred HHhhhCCCCC----C-ceeHHHHHHHHHhhC
Q 033583 90 VFRSFDRDGN----G-YITAAELAGSMAIIG 115 (116)
Q Consensus 90 ~f~~~D~~~~----g-~i~~~e~~~~l~~~g 115 (116)
-.+.|++|+. | .+|.+||..+...++
T Consensus 40 DiR~Wspdh~KMGKGiTLt~eE~~~l~d~l~ 70 (72)
T COG4443 40 DIRAWSPDHSKMGKGITLTNEEFKALKDLLN 70 (72)
T ss_pred cccccCcchhhhcCceeecHHHHHHHHHHHh
Confidence 3456666643 2 277888888776654
No 262
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=24.56 E-value=2.6e+02 Score=19.70 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=32.8
Q ss_pred cccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 62 LVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 62 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
.++++.+.-.....-. ....+.++.++...|.+++|......+.+++..
T Consensus 74 ~~~l~k~~~~~~~~~~---gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYEK---GTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred cchHHHHhhHHhhhcc---CcccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 4666666443221111 123456777888999999999999998888765
No 263
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.43 E-value=2.8e+02 Score=20.03 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhh
Q 033583 11 QLKDIFMRFDMDLDGSLTQLELAALLRALG-LKPTGDQLHILLADMDSNGNGLVEFDELVALILP 74 (116)
Q Consensus 11 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 74 (116)
.++.+-+.+|.+.+|.|+.+|--.+++.-. +.-+...-.+.|.. .+..|+.+++-.+|..
T Consensus 69 Air~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 69 AIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 455566688999999999999999987643 32222222223322 3567888887666643
No 264
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.30 E-value=1.2e+02 Score=15.62 Aligned_cols=18 Identities=6% Similarity=0.143 Sum_probs=7.2
Q ss_pred HHHHcCCCCCHHHHHHHH
Q 033583 35 LLRALGLKPTGDQLHILL 52 (116)
Q Consensus 35 ~l~~~~~~~~~~~~~~~~ 52 (116)
++..+....+.+.+..-|
T Consensus 5 ii~~Lh~G~~~e~vk~~F 22 (71)
T PF04282_consen 5 IIKRLHEGEDPEEVKEEF 22 (71)
T ss_pred HHHHHhCCCCHHHHHHHH
Confidence 333333333344444444
No 265
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=24.26 E-value=79 Score=16.18 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=10.3
Q ss_pred CCCceeHHHHHHHHHh
Q 033583 98 GNGYITAAELAGSMAI 113 (116)
Q Consensus 98 ~~g~i~~~e~~~~l~~ 113 (116)
..|.++.+||+.++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4566777777766643
No 266
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.13 E-value=1.2e+02 Score=18.29 Aligned_cols=45 Identities=16% Similarity=0.111 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhCcC----CCCcccHHHHHHHH
Q 033583 28 TQLELAALLRALGLKPTGDQLHILLADMDSN----GNGLVEFDELVALI 72 (116)
Q Consensus 28 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~ 72 (116)
+.+||.+.|+..-..+++++.+++...|+.. .....+-++.++-+
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~L 50 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAEL 50 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHc
Confidence 5667777776544456777777766655321 12224566665554
No 267
>PTZ00315 2'-phosphotransferase; Provisional
Probab=23.85 E-value=2.1e+02 Score=21.37 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=29.2
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCc
Q 033583 21 MDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDS 57 (116)
Q Consensus 21 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 57 (116)
.+.+|++..+++....+.-+..++.+.+..+...-++
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 4679999999999987765566788898888876443
No 268
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=23.72 E-value=1.9e+02 Score=17.99 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 033583 3 MVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLAD 54 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (116)
.+|.+++.+|...| ++++|+.-.+-..+.+.++ +++..++-+|..
T Consensus 108 ~ft~~Ql~~LE~~F-----~~~~Yvvg~eR~~LA~~L~--LsetQVkvWFQN 152 (197)
T KOG0843|consen 108 AFTPEQLLKLEHAF-----EGNQYVVGAERKQLAQSLS--LSETQVKVWFQN 152 (197)
T ss_pred ccCHHHHHHHHHHH-----hcCCeeechHHHHHHHHcC--CChhHhhhhhhh
Confidence 47888888888777 5678888888888877765 445566666643
No 269
>PF15244 HSD3: Hydroxy-steroid dehydrogenase
Probab=23.71 E-value=2.4e+02 Score=20.10 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 65 FDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 65 ~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
|=+|+.-+-..+..........+..+|+..-....|.+..+-+++.+..+
T Consensus 362 YL~Fi~dVT~eIL~~GlfSnr~Lervfe~HI~~Nk~~Lde~kMr~ll~~L 411 (419)
T PF15244_consen 362 YLKFIEDVTNEILKRGLFSNRVLERVFERHIDQNKHRLDEEKMRHLLEQL 411 (419)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhcccCHHHHHHHHHHH
Confidence 33344444333333334456778889988877888999999999888765
No 270
>PHA02142 putative RNA ligase
Probab=23.47 E-value=30 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=20.9
Q ss_pred HHhhhCCCCCCceeHHHHHHHHHhhC
Q 033583 90 VFRSFDRDGNGYITAAELAGSMAIIG 115 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l~~~g 115 (116)
+|..|+.++.+.++.+++..+|.++|
T Consensus 274 vF~v~~i~~~~yl~~~e~~~~~~~~g 299 (366)
T PHA02142 274 AFRAWFIDEQRFATDEEFQDLCRTLG 299 (366)
T ss_pred EEEEEEeccceeCCHHHHHHHHHHcC
Confidence 55666677888999999999988776
No 271
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=23.34 E-value=1.3e+02 Score=15.98 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=39.7
Q ss_pred CCcccHHHHHHHHHHcCC-----CCCHHHHHHHHHhhCcCCCCcccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCC
Q 033583 24 DGSLTQLELAALLRALGL-----KPTGDQLHILLADMDSNGNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDG 98 (116)
Q Consensus 24 ~g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 98 (116)
||.++..|...+.+.+.. ......+..++......- ...+..++...+.....+ .....-+..++.....
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~ia~a-- 90 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPP--ELRETAFAVAVDIAAA-- 90 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHc--
Confidence 788888888777665431 223445555555442210 023445555554432221 1344445556666544
Q ss_pred CCceeHHH
Q 033583 99 NGYITAAE 106 (116)
Q Consensus 99 ~g~i~~~e 106 (116)
||.++..|
T Consensus 91 DG~~~~~E 98 (111)
T cd07176 91 DGEVDPEE 98 (111)
T ss_pred cCCCCHHH
Confidence 45677665
No 272
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=23.29 E-value=2.9e+02 Score=19.81 Aligned_cols=89 Identities=10% Similarity=0.182 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh----CcCCCCcccHHHHHHHHhhhH------
Q 033583 7 EQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADM----DSNGNGLVEFDELVALILPDI------ 76 (116)
Q Consensus 7 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~~~~~~~------ 76 (116)
++...+..++ .+-....+..+.+||.+.++.....+. +.+..++..- .....+...+|..+++++..+
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~-~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~M~FD~E 363 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELL-EFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLMMMFDAE 363 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHH-HHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHHHHhCch
Confidence 3344566667 666666789999999999986432221 2233333111 111234467777766665443
Q ss_pred -HHhhhhhHHHHHHHHhhhCCC
Q 033583 77 -SEQVLVNQEQLMEVFRSFDRD 97 (116)
Q Consensus 77 -~~~~~~~~~~~~~~f~~~D~~ 97 (116)
++.......+++.+|...+.+
T Consensus 364 RSD~VyKiLnKlK~v~st~~~~ 385 (445)
T PF13608_consen 364 RSDCVYKILNKLKGVFSTMGQD 385 (445)
T ss_pred hhHHHHHHHHHHHHHHhccCCC
Confidence 222334456777777777665
No 273
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=23.03 E-value=90 Score=15.43 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=12.0
Q ss_pred HHhhhCCCCCCceeHHHHHHHH
Q 033583 90 VFRSFDRDGNGYITAAELAGSM 111 (116)
Q Consensus 90 ~f~~~D~~~~g~i~~~e~~~~l 111 (116)
+|+.| .+..|.|+.-++...|
T Consensus 12 A~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 12 AFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHH-HHhCCCccHHHHHHHH
Confidence 34444 4456777776665544
No 274
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=22.80 E-value=1.2e+02 Score=16.68 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=11.4
Q ss_pred ccHHHHHHHHHHcC--CCCCHHHHHHHHHhh
Q 033583 27 LTQLELAALLRALG--LKPTGDQLHILLADM 55 (116)
Q Consensus 27 i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~ 55 (116)
++..++..+...+. ..++.+.+..++..|
T Consensus 30 l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF 60 (108)
T PF14842_consen 30 LDEEEIERISREMAKLGSVSPEEVEEVLEEF 60 (108)
T ss_dssp S-HHHHHHHHHHHHT-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444554444331 245555555555444
No 275
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=22.76 E-value=1.5e+02 Score=16.52 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=5.2
Q ss_pred CHHHHHHHHHh
Q 033583 44 TGDQLHILLAD 54 (116)
Q Consensus 44 ~~~~~~~~~~~ 54 (116)
+.+++..++..
T Consensus 80 ~~dElrai~~~ 90 (112)
T PRK14981 80 TRDELRAIFAK 90 (112)
T ss_pred CHHHHHHHHHH
Confidence 34455555533
No 276
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=22.61 E-value=1.4e+02 Score=15.87 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=21.2
Q ss_pred cccHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhCCCCCCc--eeHHHHHHHH
Q 033583 62 LVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGY--ITAAELAGSM 111 (116)
Q Consensus 62 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~--i~~~e~~~~l 111 (116)
.++|.+.+.+++..+. +....+|..-|.+||.. =|-+|+++++
T Consensus 22 ~L~F~DvL~~I~~vlp-------~aT~tAFeYEDE~gDRITVRSDeEm~AMl 66 (91)
T cd06395 22 QLLFRDVLDVIGQVLP-------EATTTAFEYEDEDGDRITVRSDEEMKAML 66 (91)
T ss_pred cccHHHHHHHHHHhcc-------cccccceeeccccCCeeEecchHHHHHHH
Confidence 3666666666544222 23344566666666543 2334444443
No 277
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=22.54 E-value=2.9e+02 Score=19.64 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=42.9
Q ss_pred cccHHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHcCCCCCHH---HHHHHHHhhCcCCCCcccHHHHHHHHhhhHHH
Q 033583 3 MVQSEQLKQLKDIFMRFD-MDLDGSLTQLELAALLRALGLKPTGD---QLHILLADMDSNGNGLVEFDELVALILPDISE 78 (116)
Q Consensus 3 ~l~~~~~~~l~~~f~~~d-~~~~g~i~~~e~~~~l~~~~~~~~~~---~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 78 (116)
++.++-...+.++|...- +-+|--|+.+.+..+ ..++...+++ .+.+++..|. .|.|+=+++.-.++.-+.-
T Consensus 82 QFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i-~~i~~d~~de~~e~lrevlh~YK---KG~idGDdLv~eIa~aL~v 157 (536)
T COG2024 82 QFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQI-EEIGIDEPDEKVERLREVLHAYK---KGEIDGDDLVHEIAEALEV 157 (536)
T ss_pred HhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHH-HHhcCCCchhhHHHHHHHHHHHh---cCCCCcchhHHHHHHHhcc
Confidence 355666667777776653 223433444444333 5555555444 4455555553 4556666665544433322
Q ss_pred hhhhhHHHHHHHHhhh
Q 033583 79 QVLVNQEQLMEVFRSF 94 (116)
Q Consensus 79 ~~~~~~~~~~~~f~~~ 94 (116)
......+.+..+|.-|
T Consensus 158 ~d~~~~~vle~vFPEf 173 (536)
T COG2024 158 DDGTGLRVLEEVFPEF 173 (536)
T ss_pred CcchHHHHHHHhChHH
Confidence 1112233444555433
No 278
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=22.31 E-value=2.2e+02 Score=18.07 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=28.8
Q ss_pred CCcccHHHHHHHHhhhHHHhhhh---------hHHHHHHHHhhhCCCCCCcee
Q 033583 60 NGLVEFDELVALILPDISEQVLV---------NQEQLMEVFRSFDRDGNGYIT 103 (116)
Q Consensus 60 ~~~i~~~ef~~~~~~~~~~~~~~---------~~~~~~~~f~~~D~~~~g~i~ 103 (116)
.|.++|..++.-+.....+.... -...+...-+.||++.+|.|-
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 47799999988887665432111 112344556889999999864
No 279
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.19 E-value=2.4e+02 Score=18.45 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=43.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH-HHhhhHHHhhhhhHHHHHHHHhh
Q 033583 15 IFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVA-LILPDISEQVLVNQEQLMEVFRS 93 (116)
Q Consensus 15 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~-~~~~~~~~~~~~~~~~~~~~f~~ 93 (116)
+...+.. .+|.++.+.+..++.+ ...--+.+..++...-.+.+.-++-+++.. +++.++- ......+.+.-+.+.
T Consensus 6 il~~l~~-~~~~~P~~al~~A~~~--~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LL-aq~re~~A~~~li~l 81 (249)
T PF06685_consen 6 ILEQLSY-NDGEFPREALEAAIEQ--REEITPELLKILEDAIERANELLDDEEYNLHFYALYLL-AQFREERALPPLIRL 81 (249)
T ss_pred HHHHHHh-ccccCcHHHHHHHHHC--HHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHH-HHHhhhhhHHHHHHH
Confidence 3334433 5688999988888763 111122333333332111111112222221 1111111 001122334455566
Q ss_pred hCCCC------CCceeHHHHHHHHHhhCC
Q 033583 94 FDRDG------NGYITAAELAGSMAIIGN 116 (116)
Q Consensus 94 ~D~~~------~g~i~~~e~~~~l~~~g~ 116 (116)
+..++ -|-...+++..++.++|+
T Consensus 82 ~~~~~~~~~~l~GD~~tE~l~~ilasv~~ 110 (249)
T PF06685_consen 82 FSQDDDFLEDLFGDFITEDLPRILASVGD 110 (249)
T ss_pred HcCCcchHHHHHcchhHhHHHHHHHHHhC
Confidence 65555 355666777777777653
No 280
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=22.15 E-value=1.2e+02 Score=15.00 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=17.7
Q ss_pred HHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 87 LMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 87 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+..+...+...-...++..|+..+.+++
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi 65 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSI 65 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4444444444447778888888877764
No 281
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=22.08 E-value=2.1e+02 Score=17.68 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHcCC-CCCHHHHHHHHHhh
Q 033583 25 GSLTQLELAALLRALGL-KPTGDQLHILLADM 55 (116)
Q Consensus 25 g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~ 55 (116)
..+..=++...++.+|. ..-+.+|..++..+
T Consensus 45 d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i 76 (183)
T PF01397_consen 45 DPLEKLELIDTLQRLGISYHFEDEIKEILDSI 76 (183)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56677778888999996 56778888877654
No 282
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=21.97 E-value=1.1e+02 Score=17.01 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=13.0
Q ss_pred CCceeHHHHHHHHHhhC
Q 033583 99 NGYITAAELAGSMAIIG 115 (116)
Q Consensus 99 ~g~i~~~e~~~~l~~~g 115 (116)
.+.||-+++..+|..++
T Consensus 78 ~~kI~d~~L~~iL~~i~ 94 (107)
T PF01984_consen 78 RGKIDDEQLKEILEQIS 94 (107)
T ss_dssp SS-B-HHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 67899999999998875
No 283
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=21.91 E-value=94 Score=16.25 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=8.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCC
Q 033583 5 QSEQLKQLKDIFMRFDMDLDG 25 (116)
Q Consensus 5 ~~~~~~~l~~~f~~~d~~~~g 25 (116)
+++.++++-.-+..|+.+..|
T Consensus 59 ~~~~v~~II~~~~LF~~~~~~ 79 (87)
T PF14297_consen 59 SEEYVEEIINEYGLFDIEEYG 79 (87)
T ss_pred CHHHHHHHHHHhCCcccCCCc
Confidence 333444433333444433333
No 284
>PF11165 DUF2949: Protein of unknown function (DUF2949); InterPro: IPR021336 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.91 E-value=1.2e+02 Score=14.91 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=9.6
Q ss_pred CceeHHHHHHHHHhh
Q 033583 100 GYITAAELAGSMAII 114 (116)
Q Consensus 100 g~i~~~e~~~~l~~~ 114 (116)
|.||.+++..++.-+
T Consensus 42 GLItL~QL~~i~DWl 56 (58)
T PF11165_consen 42 GLITLEQLDQIFDWL 56 (58)
T ss_pred ccccHHHHHHHHHHH
Confidence 667777776666544
No 285
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=21.83 E-value=78 Score=14.02 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=6.4
Q ss_pred CceeHHHHHHH
Q 033583 100 GYITAAELAGS 110 (116)
Q Consensus 100 g~i~~~e~~~~ 110 (116)
|.||.+++..+
T Consensus 25 g~IT~eey~eI 35 (40)
T PF09693_consen 25 GWITKEEYKEI 35 (40)
T ss_pred CeECHHHHHHh
Confidence 55666666544
No 286
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.65 E-value=1.4e+02 Score=17.73 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.1
Q ss_pred CcccHHHHHHHHHHHHHhcC
Q 033583 2 VMVQSEQLKQLKDIFMRFDM 21 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~ 21 (116)
++||+++...+..+...|..
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~ 61 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYA 61 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 46999999999999988854
No 287
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=21.34 E-value=88 Score=15.39 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=9.6
Q ss_pred eeHHHHHHHHHhhC
Q 033583 102 ITAAELAGSMAIIG 115 (116)
Q Consensus 102 i~~~e~~~~l~~~g 115 (116)
++.+++...|..+|
T Consensus 19 i~~~ei~~~L~~lg 32 (71)
T smart00874 19 LSAEEIEEILKRLG 32 (71)
T ss_pred CCHHHHHHHHHHCC
Confidence 66677777777665
No 288
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.26 E-value=57 Score=20.06 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHh
Q 033583 82 VNQEQLMEVFRSFDRDGNGYITAAELAGSMAI 113 (116)
Q Consensus 82 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 113 (116)
...+.++.+|..||++.--..+.+++.+.+..
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d 81 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQD 81 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcC
Confidence 45667788888888877777777777666543
No 289
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=21.16 E-value=98 Score=15.42 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=8.0
Q ss_pred eeHHHHHHHHHhhC
Q 033583 102 ITAAELAGSMAIIG 115 (116)
Q Consensus 102 i~~~e~~~~l~~~g 115 (116)
++.+++..+|..+|
T Consensus 19 i~~~~i~~~L~~lg 32 (70)
T PF03484_consen 19 ISPEEIIKILKRLG 32 (70)
T ss_dssp --HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCC
Confidence 66666666666665
No 290
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=21.06 E-value=1.4e+02 Score=16.25 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=7.5
Q ss_pred ccHHHHHHHHHHHHHhcC
Q 033583 4 VQSEQLKQLKDIFMRFDM 21 (116)
Q Consensus 4 l~~~~~~~l~~~f~~~d~ 21 (116)
|+++++++++..-.++.+
T Consensus 34 lTEDElkEF~~kseQlrr 51 (97)
T PF15337_consen 34 LTEDELKEFQVKSEQLRR 51 (97)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 291
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=20.93 E-value=72 Score=15.08 Aligned_cols=15 Identities=40% Similarity=0.370 Sum_probs=7.8
Q ss_pred CCCcccHHHHHHHHH
Q 033583 23 LDGSLTQLELAALLR 37 (116)
Q Consensus 23 ~~g~i~~~e~~~~l~ 37 (116)
+++.+|..|+...+.
T Consensus 19 g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 19 GGGPLSLSEIAARLP 33 (51)
T ss_dssp TTS-BEHHHHHHTST
T ss_pred CCCCCCHHHHHHHcC
Confidence 345666666655543
No 292
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.80 E-value=1.1e+02 Score=14.05 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=18.3
Q ss_pred CCccc-HHHHHHHHHHcCCCCCHHHHHHHHHh
Q 033583 24 DGSLT-QLELAALLRALGLKPTGDQLHILLAD 54 (116)
Q Consensus 24 ~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~ 54 (116)
.|.|+ ...+.+.++..+..++++.+..+++.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45565 44444555556677777776666543
No 293
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=20.69 E-value=2e+02 Score=17.10 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 033583 2 VMVQSEQLKQLKDIFMRFDMDLDGSLTQLELAALLRALGLKPTGDQLHILLADM 55 (116)
Q Consensus 2 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 55 (116)
..+++.....+..++.... ..|.+...++...| ++++..+..+++..
T Consensus 2 ~~~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L-----~Vsp~sVt~ml~rL 48 (154)
T COG1321 2 AMLSETEEDYLETIYELLE--EKGFARTKDIAERL-----KVSPPSVTEMLKRL 48 (154)
T ss_pred CccchHHHHHHHHHHHHHh--ccCcccHHHHHHHh-----CCCcHHHHHHHHHH
Confidence 4567777777887777665 67888887777764 23344555555554
No 294
>PHA02335 hypothetical protein
Probab=20.66 E-value=1.8e+02 Score=16.37 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=7.8
Q ss_pred CcccHHHHHHHH
Q 033583 61 GLVEFDELVALI 72 (116)
Q Consensus 61 ~~i~~~ef~~~~ 72 (116)
..|++++|..-+
T Consensus 23 ~sVt~ddf~~Dl 34 (118)
T PHA02335 23 QSVTYDDFEEDL 34 (118)
T ss_pred ccccHHHHHHHH
Confidence 457777776554
No 295
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=20.64 E-value=2.5e+02 Score=18.58 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhc-CCCCCcccHHHHHHHHHHcCC--------------CCCHHHHHH-HHHhhCcCCCCcccHHHHHHHH
Q 033583 9 LKQLKDIFMRFD-MDLDGSLTQLELAALLRALGL--------------KPTGDQLHI-LLADMDSNGNGLVEFDELVALI 72 (116)
Q Consensus 9 ~~~l~~~f~~~d-~~~~g~i~~~e~~~~l~~~~~--------------~~~~~~~~~-~~~~~d~~~~~~i~~~ef~~~~ 72 (116)
+.++.+-|.... ......+|..++.+++..+-. .++++.+.+ +-..+... .|+|+.-+....+
T Consensus 2 i~~L~~~~q~~Q~~~~~~rLSErnciEiv~kL~~~~~ldli~T~dGkeyiT~~~L~~EI~~el~~~-gGRv~~~dL~~~L 80 (272)
T PF09743_consen 2 IEELQADFQRAQLASSSQRLSERNCIEIVNKLIEKKLLDLIHTTDGKEYITPEQLEKEIKDELYVH-GGRVNLVDLAQAL 80 (272)
T ss_pred HHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHcCCeeEEEECCCCEEECHHHHHHHHHHHHHHc-CCceEHHHHHHhc
Confidence 455666665543 334667888888877764310 133443333 22233333 3667777766665
Q ss_pred hh
Q 033583 73 LP 74 (116)
Q Consensus 73 ~~ 74 (116)
..
T Consensus 81 nV 82 (272)
T PF09743_consen 81 NV 82 (272)
T ss_pred Cc
Confidence 43
No 296
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=20.55 E-value=1.5e+02 Score=15.63 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=9.3
Q ss_pred hcCCCCCcccHHHHHHH
Q 033583 19 FDMDLDGSLTQLELAAL 35 (116)
Q Consensus 19 ~d~~~~g~i~~~e~~~~ 35 (116)
.+.+++|+++..-+..+
T Consensus 32 ~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 32 IEKSRDGYIDISLLVSF 48 (82)
T ss_pred hcCCCCCCEeHHHHhcc
Confidence 34445666666555544
No 297
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=20.30 E-value=1.6e+02 Score=19.36 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=12.9
Q ss_pred ccHHHHHHHHHHHHH-h-cCCCCCcccHHHHHHHHHHc
Q 033583 4 VQSEQLKQLKDIFMR-F-DMDLDGSLTQLELAALLRAL 39 (116)
Q Consensus 4 l~~~~~~~l~~~f~~-~-d~~~~g~i~~~e~~~~l~~~ 39 (116)
|++++..++.+.+.. + +.+ .|.++..++...+..+
T Consensus 209 L~~~E~~~W~~~~~~rL~~~~-~~~~tl~~~~~~i~~L 245 (269)
T PF08411_consen 209 LSEEEQQRWQEYCQQRLTDPD-GGWLTLEEYFQEIEEL 245 (269)
T ss_dssp --HHHHHHHHHHHHHHS-HHH------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHHH
Confidence 455555555543332 1 222 4555555555555443
No 298
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=20.06 E-value=1.8e+02 Score=16.26 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=32.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q 033583 26 SLTQLELAALLRALGLKPTGDQLHILLADMDSNGNGLVEFDELVAL 71 (116)
Q Consensus 26 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 71 (116)
.|+..++..+|...|..+...++..+...+. .++.++.+.-
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHh
Confidence 8999999999999999998888888887762 2566776643
No 299
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=20.03 E-value=1.8e+02 Score=16.35 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=27.0
Q ss_pred CcccHHHHHHHHhhhHHHhhh-hhHHHHHHHHhhhCCCCCCceeHHHHHHHHHhh
Q 033583 61 GLVEFDELVALILPDISEQVL-VNQEQLMEVFRSFDRDGNGYITAAELAGSMAII 114 (116)
Q Consensus 61 ~~i~~~ef~~~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 114 (116)
+..+.++|+.-+......... .....++..|..+ ...|+..++..+...+
T Consensus 67 ~~~~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l----~~~v~~ge~~~v~~~L 117 (125)
T PF10025_consen 67 GRFDLDEFLARVAERLGGADEDDAERLARAVFAAL----REAVSEGEFEDVRSQL 117 (125)
T ss_dssp ---SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHH----HHHS-HHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHccCCCcccHHHHHHHHHHHH----HHHCCHHHHHHHHHHC
Confidence 349999999988764432211 2333455555555 3447777777766554
Done!