Query 033584
Match_columns 116
No_of_seqs 105 out of 1024
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1div_A Ribosomal protein L9; r 100.0 3.3E-37 1.1E-41 220.3 15.5 114 1-115 33-147 (149)
2 3r8s_H 50S ribosomal protein L 100.0 7.5E-37 2.6E-41 218.5 13.4 114 1-115 33-148 (149)
3 1nkw_F 50S ribosomal protein L 100.0 2.1E-36 7.3E-41 215.5 15.1 112 1-115 32-144 (146)
4 3v2d_I 50S ribosomal protein L 100.0 3.7E-36 1.3E-40 214.7 11.2 113 1-115 33-146 (148)
5 3bbo_J Ribosomal protein L9; l 100.0 2.3E-36 7.9E-41 224.2 -0.6 116 1-116 82-197 (197)
6 2hba_A BL17, 50S ribosomal pro 96.1 0.0032 1.1E-07 36.9 2.3 19 1-19 33-51 (52)
7 3ghd_A A cystathionine beta-sy 84.3 0.48 1.7E-05 28.3 1.8 26 54-80 30-55 (70)
8 3gby_A Uncharacterized protein 70.1 3.3 0.00011 26.1 2.7 22 53-74 106-127 (128)
9 3k6e_A CBS domain protein; str 69.9 4.2 0.00014 27.1 3.4 23 52-74 121-143 (156)
10 2ef7_A Hypothetical protein ST 65.8 4.9 0.00017 25.2 2.9 22 53-74 105-126 (133)
11 3kpb_A Uncharacterized protein 65.2 3.4 0.00012 25.5 2.0 21 53-73 100-120 (122)
12 3lqn_A CBS domain protein; csg 65.2 5.1 0.00018 25.8 3.0 22 53-74 123-144 (150)
13 3fio_A A cystathionine beta-sy 63.1 3.8 0.00013 23.0 1.8 19 56-74 32-50 (70)
14 2yzi_A Hypothetical protein PH 62.7 4.7 0.00016 25.5 2.4 21 54-74 110-130 (138)
15 2nyc_A Nuclear protein SNF4; b 62.1 6.2 0.00021 24.9 2.9 22 53-74 121-142 (144)
16 3hf7_A Uncharacterized CBS-dom 61.8 9.7 0.00033 24.1 3.8 22 52-73 106-127 (130)
17 2emq_A Hypothetical conserved 61.2 6.3 0.00021 25.5 2.8 22 53-74 119-140 (157)
18 3i8n_A Uncharacterized protein 61.0 5.8 0.0002 25.0 2.6 20 53-72 109-128 (130)
19 3jtf_A Magnesium and cobalt ef 61.0 12 0.00041 23.5 4.1 22 52-73 105-126 (129)
20 2p9m_A Hypothetical protein MJ 60.8 15 0.00052 22.9 4.6 21 53-73 116-136 (138)
21 3kxr_A Magnesium transporter, 58.9 13 0.00044 26.0 4.3 25 52-76 153-177 (205)
22 3oco_A Hemolysin-like protein 58.3 7.6 0.00026 25.3 2.9 22 53-74 123-144 (153)
23 3lv9_A Putative transporter; C 58.1 7.9 0.00027 24.9 2.9 21 53-73 125-145 (148)
24 1o50_A CBS domain-containing p 57.7 7.8 0.00027 25.2 2.8 22 53-74 133-154 (157)
25 4gqw_A CBS domain-containing p 57.4 7.1 0.00024 24.8 2.5 22 53-74 123-144 (152)
26 2uv4_A 5'-AMP-activated protei 56.7 7.6 0.00026 25.2 2.6 20 53-72 131-150 (152)
27 3nqr_A Magnesium and cobalt ef 56.6 5.3 0.00018 25.1 1.8 20 53-72 106-125 (127)
28 1yav_A Hypothetical protein BS 56.6 8.8 0.0003 25.0 3.0 37 35-74 107-143 (159)
29 3ctu_A CBS domain protein; str 55.6 8 0.00027 25.0 2.6 22 53-74 122-143 (156)
30 3sl7_A CBS domain-containing p 54.6 9.6 0.00033 25.0 2.9 22 53-74 136-157 (180)
31 3ocm_A Putative membrane prote 52.0 11 0.00039 25.4 3.0 22 53-74 137-158 (173)
32 2pfi_A Chloride channel protei 50.8 14 0.00048 23.8 3.2 23 55-77 129-151 (164)
33 1q1v_A DEK protein; winged-hel 50.2 7.2 0.00025 23.6 1.5 25 59-83 30-55 (70)
34 3lhh_A CBS domain protein; str 49.9 11 0.00037 25.2 2.6 22 53-74 144-165 (172)
35 3fhm_A Uncharacterized protein 48.8 13 0.00046 24.3 2.9 22 53-74 65-86 (165)
36 3lfr_A Putative metal ION tran 48.6 5.3 0.00018 25.6 0.8 22 53-74 107-128 (136)
37 2p5k_A Arginine repressor; DNA 47.7 8.5 0.00029 21.4 1.5 33 60-94 18-50 (64)
38 1m2d_A [2Fe-2S] ferredoxin; th 45.3 11 0.00037 24.0 1.9 28 54-81 69-98 (110)
39 3k2v_A Putative D-arabinose 5- 45.3 15 0.0005 23.6 2.6 21 53-73 68-88 (149)
40 2rc3_A CBS domain; in SITU pro 45.0 13 0.00046 23.2 2.3 20 55-74 113-132 (135)
41 2oux_A Magnesium transporter; 45.0 15 0.00053 26.9 3.0 22 53-74 239-260 (286)
42 4fry_A Putative signal-transdu 44.3 19 0.00064 23.2 3.0 20 55-74 117-136 (157)
43 2ahq_A Sigma-54, RNA polymeras 44.2 6.7 0.00023 24.2 0.7 22 62-84 38-59 (76)
44 1pbj_A Hypothetical protein; s 44.1 9.5 0.00033 23.4 1.5 19 56-74 105-123 (125)
45 3k6e_A CBS domain protein; str 43.7 21 0.00071 23.6 3.2 22 53-74 55-76 (156)
46 2amw_A Hypothetical protein NE 43.4 9.3 0.00032 22.7 1.3 34 60-93 38-71 (83)
47 2o16_A Acetoin utilization pro 41.2 19 0.00065 23.5 2.7 19 56-74 118-136 (160)
48 2rih_A Conserved protein with 41.2 11 0.00037 23.9 1.4 20 53-72 108-127 (141)
49 3ddj_A CBS domain-containing p 41.0 20 0.00067 25.7 2.9 22 53-74 265-286 (296)
50 2j9l_A Chloride channel protei 40.2 21 0.00071 23.5 2.8 23 55-77 147-169 (185)
51 3fv6_A YQZB protein; CBS domai 40.1 15 0.00051 23.9 2.0 18 57-74 128-145 (159)
52 1dv5_A APO-DCP, APO-D-alanyl c 39.5 10 0.00035 22.5 1.0 35 59-93 36-70 (80)
53 2lki_A Putative uncharacterize 39.4 9.9 0.00034 24.3 1.0 34 60-93 60-93 (105)
54 3l6i_A Uncharacterized lipopro 38.7 99 0.0034 21.6 7.0 50 61-113 13-70 (181)
55 4esy_A CBS domain containing m 38.7 3.9 0.00013 27.3 -1.1 21 54-74 143-163 (170)
56 1tif_A IF3-N, translation init 38.5 34 0.0012 21.1 3.3 29 50-79 17-45 (78)
57 2yvy_A MGTE, Mg2+ transporter 38.2 15 0.0005 26.7 1.9 22 53-74 237-258 (278)
58 2v8q_E 5'-AMP-activated protei 36.3 24 0.00081 25.7 2.8 24 53-76 303-326 (330)
59 3t4n_C Nuclear protein SNF4; C 35.7 26 0.00087 25.4 2.9 22 53-74 300-321 (323)
60 3a1y_A 50S ribosomal protein P 35.3 15 0.00051 21.3 1.2 24 61-85 16-39 (58)
61 2auv_A Potential NAD-reducing 34.3 10 0.00035 22.9 0.4 19 55-73 66-84 (85)
62 3l2b_A Probable manganase-depe 34.0 26 0.00089 24.5 2.6 22 53-74 45-66 (245)
63 1vr9_A CBS domain protein/ACT 33.8 33 0.0011 23.7 3.1 24 53-76 110-133 (213)
64 1im3_D Cytomegalovirus protein 33.6 16 0.00055 22.9 1.2 10 54-63 13-24 (95)
65 2lbf_B 60S acidic ribosomal pr 32.7 19 0.00066 21.7 1.5 24 61-85 18-41 (70)
66 1y5h_A Hypothetical protein RV 31.1 15 0.0005 22.9 0.8 17 56-72 114-130 (133)
67 2d4z_A Chloride channel protei 30.7 27 0.00091 25.5 2.2 20 54-73 227-246 (250)
68 2lbf_A 60S acidic ribosomal pr 29.0 23 0.00079 21.2 1.4 24 61-85 22-45 (69)
69 4hti_A Receptor-type tyrosine- 27.9 88 0.003 20.1 4.1 23 45-72 53-75 (99)
70 2qrd_G Protein C1556.08C; AMPK 27.7 35 0.0012 24.8 2.5 22 53-74 295-316 (334)
71 3ry3_A Putative solute-binding 26.6 93 0.0032 24.6 4.9 55 45-103 89-147 (528)
72 1h05_A 3-dehydroquinate dehydr 26.2 43 0.0015 23.1 2.5 27 57-83 22-51 (146)
73 1jsu_C P27, KIP1, CIP2; comple 26.1 29 0.001 21.7 1.5 19 56-74 8-26 (84)
74 2zy9_A Mg2+ transporter MGTE; 25.6 47 0.0016 26.4 3.0 22 53-74 257-278 (473)
75 2lv7_A Calcium-binding protein 25.2 40 0.0014 20.7 2.0 25 60-85 51-75 (100)
76 1b4a_A Arginine repressor; hel 25.2 23 0.00079 24.2 1.0 34 60-95 18-51 (149)
77 3kh5_A Protein MJ1225; AMPK, A 25.1 23 0.00077 24.8 0.9 19 53-71 261-279 (280)
78 1pvm_A Conserved hypothetical 25.1 17 0.00059 24.3 0.3 21 53-73 113-133 (184)
79 1g6u_A Domain swapped dimer; d 24.6 93 0.0032 16.9 4.3 30 7-36 17-46 (48)
80 1b4r_A Protein (PKD1_human); P 24.6 1.2E+02 0.0042 18.3 4.2 26 89-114 51-79 (80)
81 1neu_A Myelin P0 protein; stru 24.2 1E+02 0.0036 18.2 3.9 32 84-115 83-119 (124)
82 2uyg_A 3-dehydroquinate dehydr 23.3 46 0.0016 23.0 2.2 27 57-83 19-48 (149)
83 2d28_C XPSE, type II secretion 22.9 39 0.0013 21.9 1.8 19 60-78 47-65 (149)
84 3oi8_A Uncharacterized protein 22.9 76 0.0026 20.4 3.2 16 53-68 140-155 (156)
85 2yy0_A C-MYC-binding protein; 22.0 1.2E+02 0.004 17.1 5.1 36 7-42 16-51 (53)
86 1ykh_B RNA polymerase II holoe 21.9 1.8E+02 0.0061 19.2 5.1 33 10-42 92-124 (132)
87 1gtz_A 3-dehydroquinate dehydr 21.8 42 0.0014 23.4 1.7 27 57-83 26-55 (156)
88 2c4w_A 3-dehydroquinate dehydr 21.5 34 0.0012 24.4 1.3 26 57-82 29-59 (176)
89 2fu4_A Ferric uptake regulatio 21.5 40 0.0014 19.6 1.4 23 61-84 33-55 (83)
90 1yke_B RNA polymerase II holoe 21.4 1.9E+02 0.0065 19.7 5.1 34 10-43 92-125 (151)
91 3bwu_D FIMD, outer membrane us 21.2 1.5E+02 0.0052 18.8 4.4 24 91-114 29-52 (125)
92 1uqr_A 3-dehydroquinate dehydr 21.2 43 0.0015 23.3 1.7 27 57-83 21-50 (154)
93 2p9r_A Alpha-2-M, alpha-2-macr 20.8 1.5E+02 0.0051 17.9 4.7 32 83-114 66-97 (102)
No 1
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=100.00 E-value=3.3e-37 Score=220.35 Aligned_cols=114 Identities=29% Similarity=0.483 Sum_probs=110.8
Q ss_pred CCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCCeeEeeeCHHHHHHHHHHhcCCcee
Q 033584 1 MGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVD 80 (116)
Q Consensus 1 ~glA~~aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~l~i~~k~g~~GklfGSVt~~dIa~~L~~~~g~~id 80 (116)
||+|++||++|+++++.+++++++++++.+++|++++++|++. +|+|.+++|++|+||||||++||+++|.+++|++||
T Consensus 33 ~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i~~k~g~~gklfGSVt~~dIa~al~~~~g~~id 111 (149)
T 1div_A 33 QGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKL-TVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLD 111 (149)
T ss_dssp TTSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEECBCGGGEEEEEECHHHHHHHHHHHHCCCCC
T ss_pred CCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEEEeCCCCcEEeecCHHHHHHHHHHhhCCeec
Confidence 6999999999999999999999999999999999999999997 799999999999999999999999999999999999
Q ss_pred cccccccC-ccceeeEEEEEEecCCeEEEEEEEEee
Q 033584 81 KKIVDLPE-IRETGEYIAQLKLHPEVTARIRLNVFA 115 (116)
Q Consensus 81 kk~I~l~~-Ik~lG~y~V~i~L~~~V~a~i~v~V~~ 115 (116)
|++|.||. ||++|+|+|+|+||++|+|+++|+|++
T Consensus 112 k~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~ 147 (149)
T 1div_A 112 KRKIELADAIRALGYTNVPVKLHPEVTATLKVHVTE 147 (149)
T ss_dssp GGGBCCCSCEEESEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hheEECCCCccccEEEEEEEEECCCCEEEEEEEEEe
Confidence 99999985 999999999999999999999999986
No 2
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=100.00 E-value=7.5e-37 Score=218.48 Aligned_cols=114 Identities=29% Similarity=0.403 Sum_probs=109.5
Q ss_pred CCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCCeeEeeeCHHHHHHHHHHhcCCcee
Q 033584 1 MGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVD 80 (116)
Q Consensus 1 ~glA~~aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~l~i~~k~g~~GklfGSVt~~dIa~~L~~~~g~~id 80 (116)
||+|++||++|+++++.+++++++++++.+++|++++++|++..+++|.+++|++|+||||||++||+++|.++ |++||
T Consensus 33 ~glA~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~~~v~i~~k~g~~gklfGSVt~~dIa~al~~~-g~~id 111 (149)
T 3r8s_H 33 QGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAA-GVEVA 111 (149)
T ss_dssp SSSEECCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECBCTTSEEEEEECHHHHHHHHHTT-SCCCC
T ss_pred CCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCCCceEcccCHHHHHHHHHHc-CCcee
Confidence 69999999999999999999999999999999999999999953699999999999999999999999999988 99999
Q ss_pred ccccccc--CccceeeEEEEEEecCCeEEEEEEEEee
Q 033584 81 KKIVDLP--EIRETGEYIAQLKLHPEVTARIRLNVFA 115 (116)
Q Consensus 81 kk~I~l~--~Ik~lG~y~V~i~L~~~V~a~i~v~V~~ 115 (116)
|++|.|| |||++|+|+|+|+||++|+|+++|+|++
T Consensus 112 k~~I~l~~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~ 148 (149)
T 3r8s_H 112 KSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVA 148 (149)
T ss_dssp TTSEECSSCCEEESEEEEEEECSSSSCCCCEEEEEEE
T ss_pred hheEEcCCccccceEEEEEEEEECCCCEEEEEEEEEE
Confidence 9999997 5999999999999999999999999986
No 3
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=2.1e-36 Score=215.52 Aligned_cols=112 Identities=33% Similarity=0.498 Sum_probs=108.9
Q ss_pred CCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCCeeEeeeCHHHHHHHHHHhcCCcee
Q 033584 1 MGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVD 80 (116)
Q Consensus 1 ~glA~~aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~l~i~~k~g~~GklfGSVt~~dIa~~L~~~~g~~id 80 (116)
||+|++||++|+++++.+++++++++++.+++|++++++|++. +|+|.+++| +|+||||||++||+++|.++ |++||
T Consensus 32 ~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~-~v~i~~k~g-~gklfGSVt~~dIa~al~~~-g~~id 108 (146)
T 1nkw_F 32 QGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGV-AVELSVRAG-EGKIYGAVTHQDVANSLDQL-GFDVD 108 (146)
T ss_pred CCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEEEcC-CCceeeccCHHHHHHHHHHc-CCeec
Confidence 6999999999999999999999999999999999999999997 799999999 99999999999999999999 99999
Q ss_pred cccccccC-ccceeeEEEEEEecCCeEEEEEEEEee
Q 033584 81 KKIVDLPE-IRETGEYIAQLKLHPEVTARIRLNVFA 115 (116)
Q Consensus 81 kk~I~l~~-Ik~lG~y~V~i~L~~~V~a~i~v~V~~ 115 (116)
|++|.||. ||++|+|+|+|+||++|+|+++|+|++
T Consensus 109 k~~I~l~~~Ik~~G~~~v~vkLh~~V~a~i~v~V~~ 144 (146)
T 1nkw_F 109 RRKIDMPKTVKEVGEYDIAYRAHPEVTIPMKLVVHA 144 (146)
T ss_pred hheEECCCcccccEEEEEEEEECCCCEEEEEEEEEe
Confidence 99999985 999999999999999999999999986
No 4
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=3.7e-36 Score=214.68 Aligned_cols=113 Identities=31% Similarity=0.475 Sum_probs=109.4
Q ss_pred CCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCCeeEeeeCHHHHHHHHHHhcCCcee
Q 033584 1 MGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVD 80 (116)
Q Consensus 1 ~glA~~aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~l~i~~k~g~~GklfGSVt~~dIa~~L~~~~g~~id 80 (116)
||+|++||++|+++++.+++++++++++.+++|++++++|++. +++|.+++|++ +||||||++||+++|.+++|++||
T Consensus 33 ~g~A~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~-~v~i~~kag~~-kLfGSVt~~dIa~al~~~~g~~id 110 (148)
T 3v2d_I 33 RGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENL-TLTIPVRAGET-KIYGSVTAKDIAEALSRQHGVTID 110 (148)
T ss_dssp GTSEEECCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHSSSC-CEEEECCBSSS-SBSSCBCHHHHHHHHTTTTCCCCC
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEEEcCCC-ccccccCHHHHHHHHHHhcCCCcc
Confidence 6999999999999999999999999999999999999999997 79999999999 999999999999999998899999
Q ss_pred ccccccc-CccceeeEEEEEEecCCeEEEEEEEEee
Q 033584 81 KKIVDLP-EIRETGEYIAQLKLHPEVTARIRLNVFA 115 (116)
Q Consensus 81 kk~I~l~-~Ik~lG~y~V~i~L~~~V~a~i~v~V~~ 115 (116)
|++|.|| |||++|+|+|+|+||++|+|+++|+|++
T Consensus 111 k~~I~l~~pIk~~G~~~v~v~Lh~~V~a~i~v~V~~ 146 (148)
T 3v2d_I 111 PKRLALEKPIKELGEYVLTYKPHPEVPIQLKVSVVA 146 (148)
T ss_dssp TTSSCCSSCBCSCEEEEEECCSBTTBCCEEEEEEEC
T ss_pred hheEEcCchhhceEEEEEEEEECCCcEEEEEEEEEe
Confidence 9999998 5999999999999999999999999985
No 5
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.3e-36 Score=224.21 Aligned_cols=116 Identities=81% Similarity=1.213 Sum_probs=111.0
Q ss_pred CCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCCeeEeeeCHHHHHHHHHHhcCCcee
Q 033584 1 MGKAQIVTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQLQRDVD 80 (116)
Q Consensus 1 ~glA~~aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~~l~i~~k~g~~GklfGSVt~~dIa~~L~~~~g~~id 80 (116)
||+|++||++|+++++.+++++++++++.+++|++++++|++...|+|.+++|++|+||||||++||+++|.+++|++||
T Consensus 82 ~glAv~AT~~nlk~~e~~~~~~e~~~~~~~~~A~~la~~L~~~~~v~i~~kaGe~GkLFGSVT~~dIa~al~~~~Gi~Id 161 (197)
T 3bbo_J 82 TGKAQLMTPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDID 161 (197)
T ss_dssp TTCCCCCCHHHHHHHHTTTHHHHGGGTTTTHHHHTHHHHSSSCCCCBCCCCBCTTSSBSSCCSSHHHHGGGTSSSSCCCC
T ss_pred CCceecCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEeCCCCcEecccCHHHHHHHHHHhhCCeee
Confidence 69999999999999999999999999999999999999999962499999999999999999999999999988899999
Q ss_pred cccccccCccceeeEEEEEEecCCeEEEEEEEEeeC
Q 033584 81 KKIVDLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 116 (116)
Q Consensus 81 kk~I~l~~Ik~lG~y~V~i~L~~~V~a~i~v~V~~~ 116 (116)
|++|.||+||++|+|+|+|+||+||+++|+|+|+++
T Consensus 162 k~~I~L~~IK~lG~y~V~VkLh~eV~a~i~V~V~~~ 197 (197)
T 3bbo_J 162 KRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197 (197)
T ss_dssp STTCCSCCCSSSSCEEECCCCBTTBCCCEEEBCCCC
T ss_pred eeEEEeccccceEEEEEEEEECCCcEEEEEEEEEeC
Confidence 999999889999999999999999999999999875
No 6
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=96.10 E-value=0.0032 Score=36.94 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=17.1
Q ss_pred CCceeecCHHHHHHHHHHH
Q 033584 1 MGKAQIVTPLLLKEMKMEE 19 (116)
Q Consensus 1 ~glA~~aT~~n~k~~~~~~ 19 (116)
+|+|++||++|+++++.++
T Consensus 33 ~g~A~~AT~~n~~~~~~~~ 51 (52)
T 2hba_A 33 QGLAIEATPANLKALEAQK 51 (52)
T ss_dssp TTSEEECCHHHHHHHHHHH
T ss_pred CCceeeCCHHHHHHHHHhh
Confidence 6999999999999998664
No 7
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=84.28 E-value=0.48 Score=28.25 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=20.7
Q ss_pred CCCeeEeeeCHHHHHHHHHHhcCCcee
Q 033584 54 KGKQIFGSVTAQDVVDIIKAQLQRDVD 80 (116)
Q Consensus 54 ~~GklfGSVt~~dIa~~L~~~~g~~id 80 (116)
++|+|.|.||-.||...+... |.+..
T Consensus 30 d~~~lvGIvT~~Di~~~~~~~-~~~~~ 55 (70)
T 3ghd_A 30 EGDEILGVVTERDILDKVVAK-GKNPK 55 (70)
T ss_dssp ETTEEEEEEEHHHHHHHTTTT-TCCGG
T ss_pred ECCEEEEEEEHHHHHHHHHhc-CCCcc
Confidence 468999999999999887665 65543
No 8
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=70.09 E-value=3.3 Score=26.10 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=19.1
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.+++.+.
T Consensus 106 d~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 106 DEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp CTTCBEEEEEEHHHHHHHHHTT
T ss_pred CCCCCEEEEEEHHHHHHHHHhh
Confidence 4688999999999999998753
No 9
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=69.90 E-value=4.2 Score=27.14 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.6
Q ss_pred cCCCCeeEeeeCHHHHHHHHHHh
Q 033584 52 GGKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 52 ~g~~GklfGSVt~~dIa~~L~~~ 74 (116)
+.++|++-|-||..||.+++...
T Consensus 121 Vd~~g~l~GiiT~~Dil~~~~~~ 143 (156)
T 3k6e_A 121 VDAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHHH
T ss_pred EecCCEEEEEEEHHHHHHHHHHH
Confidence 46789999999999999999765
No 10
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=65.82 E-value=4.9 Score=25.21 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++.|.||..||.+.+...
T Consensus 105 d~~g~~~Giit~~dll~~~~~~ 126 (133)
T 2ef7_A 105 DDKGNLKGIISIRDITRAIDDM 126 (133)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHHH
Confidence 4578999999999999998765
No 11
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=65.20 E-value=3.4 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=17.6
Q ss_pred CCCCeeEeeeCHHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~ 73 (116)
.++|++-|.||..||.+++..
T Consensus 100 d~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 100 DDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CTTCBEEEEEEHHHHHHHHC-
T ss_pred CCCCCEEEEEeHHHHHHHhhc
Confidence 456899999999999998754
No 12
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=65.18 E-value=5.1 Score=25.77 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||...+...
T Consensus 123 d~~g~~~Giit~~dil~~l~~~ 144 (150)
T 3lqn_A 123 NEDGYFEGILTRRAILKLLNKK 144 (150)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCCCcEEEEEEHHHHHHHHHHH
Confidence 4689999999999999999875
No 13
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=63.08 E-value=3.8 Score=22.95 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=17.0
Q ss_pred CeeEeeeCHHHHHHHHHHh
Q 033584 56 KQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 56 GklfGSVt~~dIa~~L~~~ 74 (116)
|++.|.||..|+..++...
T Consensus 32 ~~l~Givt~~dl~~~~~~~ 50 (70)
T 3fio_A 32 DEILGVVTERDILDKVVAK 50 (70)
T ss_dssp TEEEEEEEHHHHHHHTTTT
T ss_pred CEEEEEEEHHHHHHHHHHc
Confidence 8999999999999998654
No 14
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=62.70 E-value=4.7 Score=25.50 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred CCCeeEeeeCHHHHHHHHHHh
Q 033584 54 KGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 54 ~~GklfGSVt~~dIa~~L~~~ 74 (116)
++|++-|.||..||.+.+...
T Consensus 110 ~~g~~~Giit~~dil~~~~~~ 130 (138)
T 2yzi_A 110 EEGKIVGIFTLSDLLEASRRR 130 (138)
T ss_dssp ETTEEEEEEEHHHHHHHHHCC
T ss_pred CCCCEEEEEEHHHHHHHHHHH
Confidence 478999999999999999765
No 15
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=62.08 E-value=6.2 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=18.8
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||..++...
T Consensus 121 d~~g~~~Giit~~dil~~l~~~ 142 (144)
T 2nyc_A 121 DDVGRLVGVLTLSDILKYILLG 142 (144)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCCEEEEEEHHHHHHHHHhc
Confidence 3578999999999999998654
No 16
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=61.78 E-value=9.7 Score=24.09 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=18.9
Q ss_pred cCCCCeeEeeeCHHHHHHHHHH
Q 033584 52 GGKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 52 ~g~~GklfGSVt~~dIa~~L~~ 73 (116)
..++|++-|-||..||.++|..
T Consensus 106 vd~~g~lvGiit~~Dil~~l~g 127 (130)
T 3hf7_A 106 VDEYGDIQGLVTVEDILEEIVG 127 (130)
T ss_dssp ECTTSCEEEEEEHHHHHHHHHC
T ss_pred EcCCCCEEEEeeHHHHHHHHhC
Confidence 3568999999999999999863
No 17
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=61.17 E-value=6.3 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.5
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++.|.||..||...+...
T Consensus 119 d~~g~~~Giit~~dil~~~~~~ 140 (157)
T 2emq_A 119 NDDGYFAGIFTRREVLKQLNKQ 140 (157)
T ss_dssp CSSSSEEEEEEHHHHHHHHHHT
T ss_pred cCCCeEEEEEEHHHHHHHHHHH
Confidence 4578999999999999999875
No 18
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=61.01 E-value=5.8 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=17.8
Q ss_pred CCCCeeEeeeCHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIK 72 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~ 72 (116)
.++|++-|.||..||.++|.
T Consensus 109 d~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 109 DEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp CTTSCEEEEEEHHHHHHHHH
T ss_pred cCCCCEEEEEEHHHHHHHHc
Confidence 56789999999999999885
No 19
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=60.98 E-value=12 Score=23.51 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=18.1
Q ss_pred cCCCCeeEeeeCHHHHHHHHHH
Q 033584 52 GGKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 52 ~g~~GklfGSVt~~dIa~~L~~ 73 (116)
..++|++-|.||..||.++|..
T Consensus 105 vd~~g~~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 105 IDEHGGISGLVTMEDVLEQIVG 126 (129)
T ss_dssp ECC-CCEEEEEEHHHHHHHHHH
T ss_pred EeCCCCEEEEEEHHHHHHHHhC
Confidence 3467899999999999999864
No 20
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=60.82 E-value=15 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~ 73 (116)
.++|++.|.||..||...+..
T Consensus 116 d~~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 116 DKNNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp CTTSBEEEEEEHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHh
Confidence 457899999999999998865
No 21
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=58.89 E-value=13 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=21.2
Q ss_pred cCCCCeeEeeeCHHHHHHHHHHhcC
Q 033584 52 GGKGKQIFGSVTAQDVVDIIKAQLQ 76 (116)
Q Consensus 52 ~g~~GklfGSVt~~dIa~~L~~~~g 76 (116)
+.++|++-|.||..||.+.+.....
T Consensus 153 VD~~g~lvGiIT~~Dil~~i~~e~~ 177 (205)
T 3kxr_A 153 IDDAGELIGRVTLRAATALVREHYE 177 (205)
T ss_dssp ECTTSBEEEEEEHHHHHHHHHHHHC
T ss_pred EcCCCeEEEEEEHHHHHHHHHHHHH
Confidence 3568899999999999999987644
No 22
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=58.33 E-value=7.6 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.7
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.++|...
T Consensus 123 d~~g~~vGivt~~dil~~l~~~ 144 (153)
T 3oco_A 123 DEYGGTSGIITDKDVYEELFGN 144 (153)
T ss_dssp CTTSCEEEEECHHHHHHHHHC-
T ss_pred eCCCCEEEEeeHHHHHHHHhcc
Confidence 4678999999999999999753
No 23
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=58.11 E-value=7.9 Score=24.90 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.5
Q ss_pred CCCCeeEeeeCHHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~ 73 (116)
.++|++-|.||..||.++|..
T Consensus 125 d~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 125 DEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp CTTSSEEEEEEHHHHHHHHHH
T ss_pred eCCCCEEEEEEHHHHHHHHhC
Confidence 467899999999999999864
No 24
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=57.66 E-value=7.8 Score=25.24 Aligned_cols=22 Identities=9% Similarity=0.222 Sum_probs=19.0
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++.|.||..||...+...
T Consensus 133 d~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 133 DEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHS
T ss_pred cCCCEEEEEEEHHHHHHHHHHh
Confidence 3578999999999999998754
No 25
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=57.43 E-value=7.1 Score=24.81 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.8
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.+.+...
T Consensus 123 d~~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 123 DSDGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp CTTSBEEEEEEHHHHHHHHHC-
T ss_pred CCCCcEEEEEEHHHHHHHHHhc
Confidence 4678999999999999998754
No 26
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=56.73 E-value=7.6 Score=25.17 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCCCeeEeeeCHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIK 72 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~ 72 (116)
.++|++-|.||..||.+++.
T Consensus 131 d~~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 131 DENDVVKGIVSLSDILQALV 150 (152)
T ss_dssp CTTSBEEEEEEHHHHHHHHC
T ss_pred CCCCeEEEEEEHHHHHHHHH
Confidence 35789999999999998874
No 27
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=56.62 E-value=5.3 Score=25.09 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCCCeeEeeeCHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIK 72 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~ 72 (116)
.++|++-|.||..||.++|.
T Consensus 106 d~~g~~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 106 DEFGGVSGLVTIEDILELIV 125 (127)
T ss_dssp CTTSCEEEEEEHHHHHHHC-
T ss_pred eCCCCEEEEEEHHHHHHHHh
Confidence 56889999999999998864
No 28
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=56.58 E-value=8.8 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=25.3
Q ss_pred HHHHHhhccCeEEEEEecCCCCeeEeeeCHHHHHHHHHHh
Q 033584 35 QLALIFETVGAFKVKRKGGKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 35 ~l~~~l~~~~~l~i~~k~g~~GklfGSVt~~dIa~~L~~~ 74 (116)
+....+... .+ +.. +.++|++-|.||..||...+...
T Consensus 107 ~a~~~m~~~-~~-lpV-vd~~g~~vGiit~~dil~~~~~~ 143 (159)
T 1yav_A 107 KGFGMVINN-GF-VCV-ENDEQVFEGIFTRRVVLKELNKH 143 (159)
T ss_dssp HHHHHTTTC-SE-EEE-ECTTCBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHhC-CE-EEE-EeCCCeEEEEEEHHHHHHHHHHH
Confidence 334444443 34 333 23578999999999999999865
No 29
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=55.61 E-value=8 Score=25.04 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.8
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||..++...
T Consensus 122 d~~g~~~Giit~~dil~~l~~~ 143 (156)
T 3ctu_A 122 DAEGIFQGIITRKSILKAVNAL 143 (156)
T ss_dssp CTTSBEEEEEETTHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHHH
Confidence 4679999999999999999876
No 30
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=54.64 E-value=9.6 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.2
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.+++...
T Consensus 136 d~~g~~vGiit~~dil~~~~~~ 157 (180)
T 3sl7_A 136 DADGKLIGILTRGNVVRAALQI 157 (180)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHHHH
Confidence 4688999999999999998754
No 31
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=52.02 E-value=11 Score=25.38 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|-||..||.++|...
T Consensus 137 de~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 137 DEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp CTTCCEEEEECHHHHHHHHHCC
T ss_pred eCCCCEEEEEeHHHHHHHHhCc
Confidence 5678999999999999999753
No 32
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=50.79 E-value=14 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.8
Q ss_pred CCeeEeeeCHHHHHHHHHHhcCC
Q 033584 55 GKQIFGSVTAQDVVDIIKAQLQR 77 (116)
Q Consensus 55 ~GklfGSVt~~dIa~~L~~~~g~ 77 (116)
+|++-|.||..||.+.+....+.
T Consensus 129 ~g~l~Giit~~dil~~~~~~~~~ 151 (164)
T 2pfi_A 129 RGRAVGCVSWVEMKKAISNLTNP 151 (164)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHSC
T ss_pred CCEEEEEEEHHHHHHHHHhhhCC
Confidence 58999999999999999876443
No 33
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=50.20 E-value=7.2 Score=23.58 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=21.6
Q ss_pred EeeeCHHHHHHHHHHhc-CCceeccc
Q 033584 59 FGSVTAQDVVDIIKAQL-QRDVDKKI 83 (116)
Q Consensus 59 fGSVt~~dIa~~L~~~~-g~~idkk~ 83 (116)
+-+||.++|...|...+ |+++.-++
T Consensus 30 L~tvT~K~VR~~Le~~~pg~dLs~kK 55 (70)
T 1q1v_A 30 LEEVTMKQICKKVYENYPTYDLTERK 55 (70)
T ss_dssp GGGCCHHHHHHHHHHHCSSSCCSHHH
T ss_pred HHHHhHHHHHHHHHHHccCCCChHHH
Confidence 56799999999999999 99887655
No 34
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=49.91 E-value=11 Score=25.17 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.0
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.++|...
T Consensus 144 d~~g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 144 DEYGDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp CTTSCEEEEEEHHHHHHHHHTT
T ss_pred eCCCCEEEEeeHHHHHHHHhCC
Confidence 4678999999999999998753
No 35
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=48.80 E-value=13 Score=24.34 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.0
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++.|.||..||...+...
T Consensus 65 d~~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 65 DADGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHhc
Confidence 4678999999999999988764
No 36
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=48.57 E-value=5.3 Score=25.57 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.++|...
T Consensus 107 d~~g~lvGiit~~Dil~~l~~~ 128 (136)
T 3lfr_A 107 DEYGGVAGLVTIEDVLEQIVGD 128 (136)
T ss_dssp CTTSCEEEEEEHHHHHTTC---
T ss_pred eCCCCEEEEEEHHHHHHHHhCC
Confidence 5678999999999999987643
No 37
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=47.67 E-value=8.5 Score=21.43 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=24.7
Q ss_pred eeeCHHHHHHHHHHhcCCceecccccccCccceee
Q 033584 60 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGE 94 (116)
Q Consensus 60 GSVt~~dIa~~L~~~~g~~idkk~I~l~~Ik~lG~ 94 (116)
|.+|..||++.|.+. |..|+...|. ..++.+|.
T Consensus 18 ~~~t~~el~~~l~~~-~~~vs~~Tv~-R~L~~lg~ 50 (64)
T 2p5k_A 18 EIETQDELVDMLKQD-GYKVTQATVS-RDIKELHL 50 (64)
T ss_dssp CCCSHHHHHHHHHHT-TCCCCHHHHH-HHHHHHTC
T ss_pred CCCCHHHHHHHHHHh-CCCcCHHHHH-HHHHHcCC
Confidence 358999999999887 8888887774 23556664
No 38
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=45.32 E-value=11 Score=24.05 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=21.0
Q ss_pred CCCeeEeeeCHHHHHHHHHHhc--CCceec
Q 033584 54 KGKQIFGSVTAQDVVDIIKAQL--QRDVDK 81 (116)
Q Consensus 54 ~~GklfGSVt~~dIa~~L~~~~--g~~idk 81 (116)
++|.+||-||+.++.+.|.+-. |-.+++
T Consensus 69 P~~~~y~~vt~e~v~~il~~~l~~g~~v~~ 98 (110)
T 1m2d_A 69 PDGVWYGQVKPEDVDEIVEKHLKGGEPVER 98 (110)
T ss_dssp TTTEEECSCCGGGHHHHHHHTTTTSCCCGG
T ss_pred eCCEEEecCCHHHHHHHHHHHHHCCcChHH
Confidence 4689999999999988887632 544544
No 39
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=45.30 E-value=15 Score=23.63 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.0
Q ss_pred CCCCeeEeeeCHHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~ 73 (116)
.++|++.|.||..|+...+..
T Consensus 68 d~~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 68 DDDMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp CTTCBEEEEEEHHHHHHHHCS
T ss_pred CCCCcEEEEecHHHHHHHHhc
Confidence 457899999999999988754
No 40
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=44.99 E-value=13 Score=23.20 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.1
Q ss_pred CCeeEeeeCHHHHHHHHHHh
Q 033584 55 GKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 55 ~GklfGSVt~~dIa~~L~~~ 74 (116)
+|++-|.||..||..++...
T Consensus 113 ~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 113 DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp TTEEEEEEEHHHHHHHHHC-
T ss_pred CCEEEEEEEHHHHHHHHHhc
Confidence 58999999999999998653
No 41
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=44.99 E-value=15 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.+.+...
T Consensus 239 d~~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 239 DYDDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHH
T ss_pred cCCCeEEEEEEHHHHHHHHHHH
Confidence 4678999999999999998765
No 42
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=44.30 E-value=19 Score=23.20 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=18.3
Q ss_pred CCeeEeeeCHHHHHHHHHHh
Q 033584 55 GKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 55 ~GklfGSVt~~dIa~~L~~~ 74 (116)
+|++-|.||..||.+++...
T Consensus 117 ~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 117 GGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp TTEEEEEEEHHHHHHHHHTT
T ss_pred CCEEEEEEEHHHHHHHHHHH
Confidence 58999999999999999865
No 43
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=44.19 E-value=6.7 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.6
Q ss_pred eCHHHHHHHHHHhcCCceecccc
Q 033584 62 VTAQDVVDIIKAQLQRDVDKKIV 84 (116)
Q Consensus 62 Vt~~dIa~~L~~~~g~~idkk~I 84 (116)
.|-.+|++.|+++ |+.|-||.|
T Consensus 38 lSD~~I~~~L~~~-Gi~IaRRTV 59 (76)
T 2ahq_A 38 YSDQEIANILKEK-GFKVARRTV 59 (76)
T ss_dssp CCHHHHHHHHTTT-SSCCCHHHH
T ss_pred CCHHHHHHHHHHc-CCCccHHHH
Confidence 5788999999988 999999887
No 44
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=44.13 E-value=9.5 Score=23.41 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.9
Q ss_pred CeeEeeeCHHHHHHHHHHh
Q 033584 56 KQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 56 GklfGSVt~~dIa~~L~~~ 74 (116)
|++.|.||..||...+..+
T Consensus 105 ~~~~Gvit~~dl~~~l~~~ 123 (125)
T 1pbj_A 105 DEIIGVISATDILRAKMAK 123 (125)
T ss_dssp TEEEEEEEHHHHHHHHC--
T ss_pred CEEEEEEEHHHHHHHHHhc
Confidence 8999999999999988643
No 45
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=43.73 E-value=21 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||.+||..++...
T Consensus 55 d~~~~lvGiit~~Di~~~~~~~ 76 (156)
T 3k6e_A 55 TDEKQFVGTIGLRDIMAYQMEH 76 (156)
T ss_dssp CC-CBEEEEEEHHHHHHHHHHH
T ss_pred cCCCcEEEEEEecchhhhhhhc
Confidence 4678999999999999988765
No 46
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=43.42 E-value=9.3 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=25.9
Q ss_pred eeeCHHHHHHHHHHhcCCceecccccccCcccee
Q 033584 60 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 93 (116)
Q Consensus 60 GSVt~~dIa~~L~~~~g~~idkk~I~l~~Ik~lG 93 (116)
=|+..-+++-.|.+.||++|+-..+....++++|
T Consensus 38 DSl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~ 71 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSVDDDEISAQTFETLG 71 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHH
T ss_pred CHHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHH
Confidence 4788889999999999999998776443355544
No 47
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=41.24 E-value=19 Score=23.46 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.0
Q ss_pred CeeEeeeCHHHHHHHHHHh
Q 033584 56 KQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 56 GklfGSVt~~dIa~~L~~~ 74 (116)
|++-|.||..||...+...
T Consensus 118 g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 118 DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp TEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 8999999999999987754
No 48
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=41.24 E-value=11 Score=23.93 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.7
Q ss_pred CCCCeeEeeeCHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIK 72 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~ 72 (116)
.++|++.|.||..||.+++.
T Consensus 108 d~~g~~~Giit~~dll~~~~ 127 (141)
T 2rih_A 108 NKNGELVGVLSIRDLCFERA 127 (141)
T ss_dssp CTTSCEEEEEEHHHHHSCHH
T ss_pred cCCCcEEEEEEHHHHHHHHH
Confidence 35789999999999987654
No 49
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=40.95 E-value=20 Score=25.69 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.5
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.+++...
T Consensus 265 d~~g~~~Giit~~Dil~~l~~~ 286 (296)
T 3ddj_A 265 NKDNTIRGIITERDLLIALHHI 286 (296)
T ss_dssp CTTSCEEEEEEHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHHHHHHHHH
Confidence 4588999999999999999865
No 50
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=40.16 E-value=21 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.4
Q ss_pred CCeeEeeeCHHHHHHHHHHhcCC
Q 033584 55 GKQIFGSVTAQDVVDIIKAQLQR 77 (116)
Q Consensus 55 ~GklfGSVt~~dIa~~L~~~~g~ 77 (116)
+|++-|.||..||..++......
T Consensus 147 ~g~~vGiit~~dll~~l~~~~~~ 169 (185)
T 2j9l_A 147 NGRLLGIITKKDVLKHIAQMANQ 169 (185)
T ss_dssp TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred CCEEEEEEEHHHHHHHHHHhhcc
Confidence 78999999999999999876443
No 51
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=40.09 E-value=15 Score=23.94 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=16.8
Q ss_pred eeEeeeCHHHHHHHHHHh
Q 033584 57 QIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 57 klfGSVt~~dIa~~L~~~ 74 (116)
++-|.||..||..++.+.
T Consensus 128 ~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 128 EVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp EEEEEEEHHHHHHHHHHH
T ss_pred eEEEEEEHHHHHHHHHHH
Confidence 999999999999999875
No 52
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=39.52 E-value=10 Score=22.53 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=27.3
Q ss_pred EeeeCHHHHHHHHHHhcCCceecccccccCcccee
Q 033584 59 FGSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 93 (116)
Q Consensus 59 fGSVt~~dIa~~L~~~~g~~idkk~I~l~~Ik~lG 93 (116)
.=|+..-+++-.|.+.||++|+-..+....++++|
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~ 70 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPN 70 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHH
T ss_pred cChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHH
Confidence 56888999999999999999997766543466554
No 53
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=39.44 E-value=9.9 Score=24.27 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=26.6
Q ss_pred eeeCHHHHHHHHHHhcCCceecccccccCcccee
Q 033584 60 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETG 93 (116)
Q Consensus 60 GSVt~~dIa~~L~~~~g~~idkk~I~l~~Ik~lG 93 (116)
=|+..-+++-.|.+.||++|+-..+....++++|
T Consensus 60 DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~ 93 (105)
T 2lki_A 60 DSMAVVNVITALEEYFDFSVDDDEISAQTFETLG 93 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHH
T ss_pred cHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHH
Confidence 4788888999999999999998776544466655
No 54
>3l6i_A Uncharacterized lipoprotein YCEB; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.01A {Escherichia coli}
Probab=38.69 E-value=99 Score=21.62 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=32.3
Q ss_pred eeCHHHHHHHHHHhcCCceecccccccCc--cceeeEEEEEEecC------CeEEEEEEEE
Q 033584 61 SVTAQDVVDIIKAQLQRDVDKKIVDLPEI--RETGEYIAQLKLHP------EVTARIRLNV 113 (116)
Q Consensus 61 SVt~~dIa~~L~~~~g~~idkk~I~l~~I--k~lG~y~V~i~L~~------~V~a~i~v~V 113 (116)
|||-++|-++|.+++ .++| ++.++.+ =.+-..+..++|.+ .+.+...+.|
T Consensus 13 sISE~ei~~yL~k~~--~~~k-~~gl~gl~~~~v~l~~l~v~iG~~~~~rv~l~~~~~~~v 70 (181)
T 3l6i_A 13 TITEQEINQSLAKHN--NFSK-DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDM 70 (181)
T ss_dssp EEEHHHHHHHHHHHC--CCEE-EEEETTTEEEEEEEEEEEEEESSSSTTCEEEEEEEEEEE
T ss_pred eECHHHHHHHHHHhc--Chhh-eeCCCceEEEEEEeCCceeecCCCCCCEEEEEEEEEEEE
Confidence 699999999999884 4555 3555543 25556667777754 3444444444
No 55
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=38.68 E-value=3.9 Score=27.25 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.6
Q ss_pred CCCeeEeeeCHHHHHHHHHHh
Q 033584 54 KGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 54 ~~GklfGSVt~~dIa~~L~~~ 74 (116)
++|++-|-||..||.++|..+
T Consensus 143 d~g~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 143 QDGVPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp ETTEEEEEEEHHHHTTTSCCC
T ss_pred ECCEEEEEEEHHHHHHHHHhc
Confidence 468999999999999887543
No 56
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=38.46 E-value=34 Score=21.09 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=22.5
Q ss_pred EecCCCCeeEeeeCHHHHHHHHHHhcCCce
Q 033584 50 RKGGKGKQIFGSVTAQDVVDIIKAQLQRDV 79 (116)
Q Consensus 50 ~k~g~~GklfGSVt~~dIa~~L~~~~g~~i 79 (116)
+=.|++|...|.++..+-.....+. |+++
T Consensus 17 rli~~~Ge~lGv~~~~eAl~~A~e~-~LDL 45 (78)
T 1tif_A 17 RLIDQNGDQLGIKSKQEALEIAARR-NLDL 45 (78)
T ss_dssp EEECTTSCEEEEEEHHHHHHHHHHT-TCEE
T ss_pred EEECCCCcCCCcccHHHHHHHHHHc-CCCE
Confidence 3468999999999999887776665 7653
No 57
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=38.20 E-value=15 Score=26.74 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=17.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.+.+...
T Consensus 237 d~~g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 237 DEEGRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp CTTSBEEEEEEHHHHHHHC---
T ss_pred eCCCeEEEEEEHHHHHHHHHHH
Confidence 4678999999999999988654
No 58
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=36.26 E-value=24 Score=25.75 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=20.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHhcC
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQLQ 76 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~~g 76 (116)
.++|++-|-||..||.+++....|
T Consensus 303 d~~g~l~Giit~~Dil~~~~~~~~ 326 (330)
T 2v8q_E 303 DEHDVVKGIVSLSDILQALVLTGG 326 (330)
T ss_dssp CTTSBEEEEEEHHHHHHHHHSSCC
T ss_pred cCCCcEEEEEeHHHHHHHHHhhcc
Confidence 457899999999999999987644
No 59
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=35.69 E-value=26 Score=25.41 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.1
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||.++|...
T Consensus 300 d~~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 300 DDVGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCcEEEEEEHHHHHHHHHhc
Confidence 4678999999999999998753
No 60
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=35.26 E-value=15 Score=21.29 Aligned_cols=24 Identities=4% Similarity=0.275 Sum_probs=20.5
Q ss_pred eeCHHHHHHHHHHhcCCceeccccc
Q 033584 61 SVTAQDVVDIIKAQLQRDVDKKIVD 85 (116)
Q Consensus 61 SVt~~dIa~~L~~~~g~~idkk~I~ 85 (116)
++|..+|...|+.- |+++|...+.
T Consensus 16 ~~t~~~I~~il~aa-Gveve~~~~~ 39 (58)
T 3a1y_A 16 EINEENLKAVLQAA-GVEPEEARIK 39 (58)
T ss_dssp CCCHHHHHHHHHHT-TCCCCHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHH
Confidence 89999999999887 9999976554
No 61
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=34.34 E-value=10 Score=22.93 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=15.8
Q ss_pred CCeeEeeeCHHHHHHHHHH
Q 033584 55 GKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 55 ~GklfGSVt~~dIa~~L~~ 73 (116)
+|.+||.||+.++.+.|.+
T Consensus 66 ~~~~y~~vt~e~v~~il~~ 84 (85)
T 2auv_A 66 GEKVYGNVTPGQVKKILAE 84 (85)
T ss_dssp GGGCCCCSSSSHHHHHHHH
T ss_pred CCEEECCCCHHHHHHHHHh
Confidence 3689999999999887753
No 62
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=33.96 E-value=26 Score=24.52 Aligned_cols=22 Identities=5% Similarity=0.238 Sum_probs=18.7
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++.|-||..||...+...
T Consensus 45 d~~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 45 DGNNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CTTCBEEEEEEHHHHHHHHHCC
T ss_pred cCCCEEEEEEEHHHHHHHHHHh
Confidence 4578999999999999998643
No 63
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=33.82 E-value=33 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=19.6
Q ss_pred CCCCeeEeeeCHHHHHHHHHHhcC
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQLQ 76 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~~g 76 (116)
.++|++.|.||..||...+....+
T Consensus 110 d~~g~lvGiit~~Dil~~~~~~~~ 133 (213)
T 1vr9_A 110 DEEMRLKGAVSLHDFLEALIEALA 133 (213)
T ss_dssp CTTCBEEEEEEHHHHHHHHHHSCC
T ss_pred cCCCEEEEEEEHHHHHHHHHHHhc
Confidence 356899999999999999876533
No 64
>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich, immunoglobulin (IG) fold, immunoglobulin (IG)-like domain, protein complex; 2.20A {Human herpesvirus 5} SCOP: b.1.18.5
Probab=33.61 E-value=16 Score=22.92 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=7.8
Q ss_pred CCCeeE--eeeC
Q 033584 54 KGKQIF--GSVT 63 (116)
Q Consensus 54 ~~Gklf--GSVt 63 (116)
+||++| |||+
T Consensus 13 ~ng~~f~rgsi~ 24 (95)
T 1im3_D 13 DNGKLFARGSIV 24 (95)
T ss_dssp CSSEEEEEEEEE
T ss_pred eCCeEEeeceEe
Confidence 689999 5664
No 65
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=32.73 E-value=19 Score=21.72 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.4
Q ss_pred eeCHHHHHHHHHHhcCCceeccccc
Q 033584 61 SVTAQDVVDIIKAQLQRDVDKKIVD 85 (116)
Q Consensus 61 SVt~~dIa~~L~~~~g~~idkk~I~ 85 (116)
++|..||...|+.- |+++|...+.
T Consensus 18 ~~ta~~I~~il~aa-Gvevd~~~~~ 41 (70)
T 2lbf_B 18 SPSAKDIKKILDSV-GIEADDDRLN 41 (70)
T ss_dssp SCCHHHHHHHHHTT-TCCCCTTHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHH
Confidence 68999999999887 9999976654
No 66
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=31.10 E-value=15 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=15.1
Q ss_pred CeeEeeeCHHHHHHHHH
Q 033584 56 KQIFGSVTAQDVVDIIK 72 (116)
Q Consensus 56 GklfGSVt~~dIa~~L~ 72 (116)
|++-|.||..||.+.+.
T Consensus 114 g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 114 HRLVGIVTEADIARHLP 130 (133)
T ss_dssp TEEEEEEEHHHHHHTCC
T ss_pred CEEEEEEEHHHHHHHHH
Confidence 79999999999988764
No 67
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=30.69 E-value=27 Score=25.51 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.6
Q ss_pred CCCeeEeeeCHHHHHHHHHH
Q 033584 54 KGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 54 ~~GklfGSVt~~dIa~~L~~ 73 (116)
++|+|=|.||-+|+..+|..
T Consensus 227 ~~GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 227 SMGKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp ETTEEEEEEEHHHHHHHHHC
T ss_pred ECCEEEEEEEHHHHHHHHHH
Confidence 36899999999999999863
No 68
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=29.03 E-value=23 Score=21.22 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=20.5
Q ss_pred eeCHHHHHHHHHHhcCCceeccccc
Q 033584 61 SVTAQDVVDIIKAQLQRDVDKKIVD 85 (116)
Q Consensus 61 SVt~~dIa~~L~~~~g~~idkk~I~ 85 (116)
+||..+|...|+.- |+++|...+.
T Consensus 22 ~~ta~~I~~il~Aa-Gveve~~~~~ 45 (69)
T 2lbf_A 22 TVTEDKINALIKAA-GVNVEPFWPG 45 (69)
T ss_dssp CCCHHHHHHHHHHH-TCCCCTHHHH
T ss_pred CCCHHHHHHHHHHc-CCCccHHHHH
Confidence 79999999999887 9999876543
No 69
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=27.95 E-value=88 Score=20.11 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=18.4
Q ss_pred eEEEEEecCCCCeeEeeeCHHHHHHHHH
Q 033584 45 AFKVKRKGGKGKQIFGSVTAQDVVDIIK 72 (116)
Q Consensus 45 ~l~i~~k~g~~GklfGSVt~~dIa~~L~ 72 (116)
.++|....++.+ +|+.|++...-
T Consensus 53 aVTFrV~~N~~n-----~taadVA~~a~ 75 (99)
T 4hti_A 53 AVTFKVSANVQN-----VTTEDVEKATV 75 (99)
T ss_dssp EEEEEECCCTTC-----CCHHHHHHHHH
T ss_pred eEEEEeccCCCC-----CCHHHHHHHHH
Confidence 588888887765 89999997643
No 70
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=27.74 E-value=35 Score=24.77 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=19.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|.||..||..++...
T Consensus 295 d~~g~l~Giit~~dil~~~~~~ 316 (334)
T 2qrd_G 295 DENLKLEGILSLADILNYIIYD 316 (334)
T ss_dssp CTTCBEEEEEEHHHHHHHHHSC
T ss_pred CCCCeEEEEEeHHHHHHHHHhc
Confidence 4678999999999999999764
No 71
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=26.59 E-value=93 Score=24.64 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=37.6
Q ss_pred eEEEEEecCC---CCeeEeeeCHHHHHHHHHHhcCCceeccccc-ccCccceeeEEEEEEecC
Q 033584 45 AFKVKRKGGK---GKQIFGSVTAQDVVDIIKAQLQRDVDKKIVD-LPEIRETGEYIAQLKLHP 103 (116)
Q Consensus 45 ~l~i~~k~g~---~GklfGSVt~~dIa~~L~~~~g~~idkk~I~-l~~Ik~lG~y~V~i~L~~ 103 (116)
+++|..+-|- ||. -||+.|++-.+....... .+.... +..++.++.|+|.|+|..
T Consensus 89 t~tf~LR~gv~f~DG~---p~TA~DV~~s~~~~~~~~-~~~~~~~i~~v~~~d~~Tv~i~l~~ 147 (528)
T 3ry3_A 89 TWLLTLKPDLKFSDGS---PLTAKDVAFTYNNAAASG-GKVDMGNFLSAEVIDPLNVRIHLKA 147 (528)
T ss_dssp EEEEEECTTCBCTTSC---BCCHHHHHHHHHHHTSSS-CSSCCSSEEEEEEEETTEEEEEESS
T ss_pred EEEEEECCCCEeCCcC---CCCHHHHHHHHHHHHhcc-cccccccceEEEEecCCEEEEEECC
Confidence 7899998774 776 589999999987542211 011111 124788999999999864
No 72
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=26.22 E-value=43 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=17.7
Q ss_pred eeEeeeCHHHHHHHHHH---hcCCceeccc
Q 033584 57 QIFGSVTAQDVVDIIKA---QLQRDVDKKI 83 (116)
Q Consensus 57 klfGSVt~~dIa~~L~~---~~g~~idkk~ 83 (116)
.+||+.|-.||.+.+.+ ..|++++=++
T Consensus 22 ~iYG~~tl~di~~~l~~~a~~~g~~~~~~Q 51 (146)
T 1h05_A 22 AVYGGTTHDELVALIEREAAELGLKAVVRQ 51 (146)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcCCcCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 58999999999999875 4477776443
No 73
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=26.06 E-value=29 Score=21.65 Aligned_cols=19 Identities=16% Similarity=0.522 Sum_probs=15.2
Q ss_pred CeeEeeeCHHHHHHHHHHh
Q 033584 56 KQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 56 GklfGSVt~~dIa~~L~~~ 74 (116)
-.|||+|+..++-..+...
T Consensus 8 R~LFG~vd~eEl~~~f~~~ 26 (84)
T 1jsu_C 8 RNLFGPVDHEELTRDLEKH 26 (84)
T ss_dssp CCSSCCCCHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHH
Confidence 3699999999988777654
No 74
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=25.63 E-value=47 Score=26.39 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.3
Q ss_pred CCCCeeEeeeCHHHHHHHHHHh
Q 033584 53 GKGKQIFGSVTAQDVVDIIKAQ 74 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~~ 74 (116)
.++|++-|-||..||.+.+...
T Consensus 257 De~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 257 DEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp CTTSBEEEEEEHHHHHHHHHHH
T ss_pred cCCCEEEEEEehHhhHHHHHHH
Confidence 5689999999999999998764
No 75
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.24 E-value=40 Score=20.72 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=20.7
Q ss_pred eeeCHHHHHHHHHHhcCCceeccccc
Q 033584 60 GSVTAQDVVDIIKAQLQRDVDKKIVD 85 (116)
Q Consensus 60 GSVt~~dIa~~L~~~~g~~idkk~I~ 85 (116)
|.|+..++...|... |..++...++
T Consensus 51 G~I~~~El~~~l~~l-g~~~~~~ei~ 75 (100)
T 2lv7_A 51 GFISKQELGTAMRSL-GYMPNEVELE 75 (100)
T ss_dssp SCBCHHHHHHHHHHH-TCCCCTTTHH
T ss_pred CcCCHHHHHHHHHHh-CCCCCHHHHH
Confidence 689999999999886 9888776653
No 76
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=25.17 E-value=23 Score=24.23 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=23.0
Q ss_pred eeeCHHHHHHHHHHhcCCceecccccccCccceeeE
Q 033584 60 GSVTAQDVVDIIKAQLQRDVDKKIVDLPEIRETGEY 95 (116)
Q Consensus 60 GSVt~~dIa~~L~~~~g~~idkk~I~l~~Ik~lG~y 95 (116)
+.+|-.|+++.|.+. |+.+....|.= +|+.+|.-
T Consensus 18 ~~~tq~eL~~~L~~~-G~~VtqaTisR-DL~eL~~v 51 (149)
T 1b4a_A 18 DIETQDELVDRLREA-GFNVTQATVSR-DIKEMQLV 51 (149)
T ss_dssp CCCSHHHHHHHHHHT-TCCCCHHHHHH-HHHHTTCE
T ss_pred CCccHHHHHHHHHHc-CCCcCHHHHHH-HHHHcCCe
Confidence 457888999999888 99887666531 24444443
No 77
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=25.14 E-value=23 Score=24.84 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.1
Q ss_pred CCCCeeEeeeCHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDII 71 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L 71 (116)
.++|++-|.||..||..+|
T Consensus 261 d~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 261 DENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp CTTCBEEEEEEHHHHGGGG
T ss_pred CCCCeEEEEEeHHHHHHhh
Confidence 4678999999999998764
No 78
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=25.06 E-value=17 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=17.5
Q ss_pred CCCCeeEeeeCHHHHHHHHHH
Q 033584 53 GKGKQIFGSVTAQDVVDIIKA 73 (116)
Q Consensus 53 g~~GklfGSVt~~dIa~~L~~ 73 (116)
.++|++.|.||..||.+++..
T Consensus 113 d~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 113 DDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp CTTCCEEEEEEHHHHTTTSCH
T ss_pred cCCCeEEEEEEHHHHHHHHHh
Confidence 356899999999999887655
No 79
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.61 E-value=93 Score=16.90 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=18.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033584 7 VTPLLLKEMKMEEERIEAEKKRVKEEAQQL 36 (116)
Q Consensus 7 aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l 36 (116)
.+|+.+..++...+..+++.+......+++
T Consensus 17 fspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777776666655554444443
No 80
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=24.59 E-value=1.2e+02 Score=18.30 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=19.4
Q ss_pred ccceeeEEEEEEecCC---eEEEEEEEEe
Q 033584 89 IRETGEYIAQLKLHPE---VTARIRLNVF 114 (116)
Q Consensus 89 Ik~lG~y~V~i~L~~~---V~a~i~v~V~ 114 (116)
...-|.|.|.+.+..+ ..+...|.|.
T Consensus 51 Y~~~G~YtV~Ltv~~g~~~~~a~~~V~V~ 79 (80)
T 1b4r_A 51 YVLPGRYHVTAVLALGAGSALLGTDVQVE 79 (80)
T ss_dssp ECSSEEEEEEEEEECSSCEEEEEEEEEEB
T ss_pred CCCCcEEEEEEEEEeCCceEEEEEEEEEE
Confidence 7789999999988766 3455666664
No 81
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=24.18 E-value=1e+02 Score=18.24 Aligned_cols=32 Identities=22% Similarity=0.551 Sum_probs=20.4
Q ss_pred ccccC--ccceeeEEEEEEecCCe---EEEEEEEEee
Q 033584 84 VDLPE--IRETGEYIAQLKLHPEV---TARIRLNVFA 115 (116)
Q Consensus 84 I~l~~--Ik~lG~y~V~i~L~~~V---~a~i~v~V~~ 115 (116)
+.+.+ ...-|.|.+.+.-.++. .+.+.|.|.+
T Consensus 83 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~ 119 (124)
T 1neu_A 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE 119 (124)
T ss_dssp EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC
T ss_pred EEEccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEec
Confidence 44443 66789999999987664 6677777753
No 82
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=23.26 E-value=46 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=21.2
Q ss_pred eeEeeeCHHHHHHHHHH---hcCCceeccc
Q 033584 57 QIFGSVTAQDVVDIIKA---QLQRDVDKKI 83 (116)
Q Consensus 57 klfGSVt~~dIa~~L~~---~~g~~idkk~ 83 (116)
.+||+.|-.||.+.+.+ ..|++++=++
T Consensus 19 ~iYG~~tl~di~~~l~~~a~~~g~~v~~~Q 48 (149)
T 2uyg_A 19 EVYGRTTLEELEALCEAWGAELGLGVVFRQ 48 (149)
T ss_dssp SSSCSCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcCCcCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 58999999999999875 4477776444
No 83
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=22.92 E-value=39 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=17.2
Q ss_pred eeeCHHHHHHHHHHhcCCc
Q 033584 60 GSVTAQDVVDIIKAQLQRD 78 (116)
Q Consensus 60 GSVt~~dIa~~L~~~~g~~ 78 (116)
|.||..+++++|..++|++
T Consensus 47 g~i~e~~l~~~la~~~g~p 65 (149)
T 2d28_C 47 GLVSERDHAETCAEVLGLP 65 (149)
T ss_dssp TCSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHhhCCc
Confidence 6799999999999999974
No 84
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=22.91 E-value=76 Score=20.36 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.8
Q ss_pred CCCCeeEeeeCHHHHH
Q 033584 53 GKGKQIFGSVTAQDVV 68 (116)
Q Consensus 53 g~~GklfGSVt~~dIa 68 (116)
.++|++-|-||..||.
T Consensus 140 d~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 140 DEYGGTSGLVTFEDII 155 (156)
T ss_dssp CTTSSEEEEEEHHHHC
T ss_pred CCCCCEEEEEEHHHhc
Confidence 5678999999999974
No 85
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.00 E-value=1.2e+02 Score=17.07 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=29.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033584 7 VTPLLLKEMKMEEERIEAEKKRVKEEAQQLALIFET 42 (116)
Q Consensus 7 aT~~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~ 42 (116)
++......+.......+.+-....++..++..+|+.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777888888888888888888888888888875
No 86
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.85 E-value=1.8e+02 Score=19.21 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033584 10 LLLKEMKMEEERIEAEKKRVKEEAQQLALIFET 42 (116)
Q Consensus 10 ~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~ 42 (116)
+.++.|+.+.+..+.+..+...++..+-+++++
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777788888888877765
No 87
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=21.80 E-value=42 Score=23.43 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=21.2
Q ss_pred eeEeeeCHHHHHHHHHH---hcCCceeccc
Q 033584 57 QIFGSVTAQDVVDIIKA---QLQRDVDKKI 83 (116)
Q Consensus 57 klfGSVt~~dIa~~L~~---~~g~~idkk~ 83 (116)
.+||+.|-.||.+.+.+ ..|++++=++
T Consensus 26 ~iYG~~Tl~di~~~l~~~a~~~g~~v~~~Q 55 (156)
T 1gtz_A 26 EIYGSDTLADVEALCVKAAAAHGGTVDFRQ 55 (156)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 58999999999999875 4477776443
No 88
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=21.48 E-value=34 Score=24.35 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=20.3
Q ss_pred eeEeeeCHHHHHHHHHH-----hcCCceecc
Q 033584 57 QIFGSVTAQDVVDIIKA-----QLQRDVDKK 82 (116)
Q Consensus 57 klfGSVt~~dIa~~L~~-----~~g~~idkk 82 (116)
.+||+.|-.||.+.+.+ ..|++|+=+
T Consensus 29 ~iYG~~Tl~di~~~l~~~a~~~~~g~~l~~~ 59 (176)
T 2c4w_A 29 RLYGMVTLDQIHEIMQTFVKQGNLDVELEFF 59 (176)
T ss_dssp GGGTSCCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcCCcCCHHHHHHHHHHHhccccCCCEEEEE
Confidence 58999999999999886 445666643
No 89
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.47 E-value=40 Score=19.59 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.1
Q ss_pred eeCHHHHHHHHHHhcCCceecccc
Q 033584 61 SVTAQDVVDIIKAQLQRDVDKKIV 84 (116)
Q Consensus 61 SVt~~dIa~~L~~~~g~~idkk~I 84 (116)
.+|..||++.+.+. +..+++-.|
T Consensus 33 ~~s~~el~~~l~~~-~~~is~~TV 55 (83)
T 2fu4_A 33 HVSAEDLYKRLIDM-GEEIGLATV 55 (83)
T ss_dssp SBCHHHHHHHHHHT-TCCCCHHHH
T ss_pred CCCHHHHHHHHHHh-CCCCCHhhH
Confidence 58999999999877 767776655
No 90
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.35 E-value=1.9e+02 Score=19.66 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033584 10 LLLKEMKMEEERIEAEKKRVKEEAQQLALIFETV 43 (116)
Q Consensus 10 ~n~k~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~ 43 (116)
+.++.|+.+.+..+.+..+...++..+-+++++.
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777778888888888877764
No 91
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=21.20 E-value=1.5e+02 Score=18.79 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.0
Q ss_pred ceeeEEEEEEecCCeEEEEEEEEe
Q 033584 91 ETGEYIAQLKLHPEVTARIRLNVF 114 (116)
Q Consensus 91 ~lG~y~V~i~L~~~V~a~i~v~V~ 114 (116)
.-|+|.|.|.+...-..+..|...
T Consensus 29 ~PG~Y~vdI~vN~~~~~~~~i~f~ 52 (125)
T 3bwu_D 29 PPGTYRVDIYLNNGYMATRDVTFN 52 (125)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCcEEEEEEEECCeEccceEEEEE
Confidence 359999999999888777776653
No 92
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=21.19 E-value=43 Score=23.34 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.3
Q ss_pred eeEeeeCHHHHHHHHHH---hcCCceeccc
Q 033584 57 QIFGSVTAQDVVDIIKA---QLQRDVDKKI 83 (116)
Q Consensus 57 klfGSVt~~dIa~~L~~---~~g~~idkk~ 83 (116)
.+||+.|-.||.+.+.+ ..|++++=++
T Consensus 21 ~iYG~~Tl~di~~~l~~~a~~~g~~l~~~Q 50 (154)
T 1uqr_A 21 HIYGSQTLSDIEQHLQQSAQAQGYELDYFQ 50 (154)
T ss_dssp GGTTCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 58999999999999875 4477776444
No 93
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=20.84 E-value=1.5e+02 Score=17.87 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=22.7
Q ss_pred cccccCccceeeEEEEEEecCCeEEEEEEEEe
Q 033584 83 IVDLPEIRETGEYIAQLKLHPEVTARIRLNVF 114 (116)
Q Consensus 83 ~I~l~~Ik~lG~y~V~i~L~~~V~a~i~v~V~ 114 (116)
.+.||+--.+|.|.|.+....+...+-.+.|.
T Consensus 66 ~f~Lp~~~~~G~y~i~~~~~~~~~~~~~F~Ve 97 (102)
T 2p9r_A 66 SFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVE 97 (102)
T ss_dssp EEECCSSCCCEEEEEEEECTTSCEEEEEEEEC
T ss_pred EEECCCCCCCeeEEEEEEECCCCeEEEEEEEE
Confidence 46677666899999999986554555555554
Done!