Query 033591
Match_columns 115
No_of_seqs 126 out of 1210
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:02:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 9.2E-20 2E-24 116.6 10.8 89 4-93 68-156 (160)
2 KOG0027 Calmodulin and related 99.8 1.3E-17 2.9E-22 106.7 9.9 90 3-93 56-149 (151)
3 KOG0028 Ca2+-binding protein ( 99.6 2.9E-15 6.3E-20 94.9 9.9 90 4-94 82-171 (172)
4 KOG0031 Myosin regulatory ligh 99.6 1.2E-14 2.6E-19 91.6 10.0 94 1-95 74-167 (171)
5 PTZ00183 centrin; Provisional 99.6 2.2E-14 4.7E-19 91.6 11.1 90 3-93 65-154 (158)
6 PTZ00184 calmodulin; Provision 99.6 2.8E-14 6E-19 90.0 11.3 89 3-92 59-147 (149)
7 cd05022 S-100A13 S-100A13: S-1 99.5 3.3E-14 7.2E-19 83.4 7.4 68 27-95 7-77 (89)
8 KOG0034 Ca2+/calmodulin-depend 99.5 1.9E-13 4.1E-18 90.0 10.4 91 4-94 79-176 (187)
9 PF13499 EF-hand_7: EF-hand do 99.5 1E-13 2.2E-18 76.8 7.6 62 29-91 1-66 (66)
10 COG5126 FRQ1 Ca2+-binding prot 99.5 3.2E-13 6.9E-18 86.6 9.5 85 27-113 19-104 (160)
11 cd05027 S-100B S-100B: S-100B 99.5 3.9E-13 8.4E-18 78.8 8.4 66 28-94 8-80 (88)
12 KOG0027 Calmodulin and related 99.5 5.6E-13 1.2E-17 85.2 9.4 87 27-114 7-95 (151)
13 KOG0044 Ca2+ sensor (EF-Hand s 99.5 4.8E-13 1E-17 88.3 8.8 90 3-93 76-175 (193)
14 KOG0030 Myosin essential light 99.4 2E-12 4.4E-17 80.3 8.9 85 6-92 64-150 (152)
15 cd05031 S-100A10_like S-100A10 99.4 4.7E-12 1E-16 75.0 8.1 67 27-94 7-80 (94)
16 PTZ00183 centrin; Provisional 99.4 3.6E-11 7.8E-16 76.6 12.7 109 3-113 29-138 (158)
17 cd05029 S-100A6 S-100A6: S-100 99.4 6E-12 1.3E-16 73.7 8.3 67 28-95 10-81 (88)
18 cd05025 S-100A1 S-100A1: S-100 99.4 7.3E-12 1.6E-16 73.9 8.4 69 27-95 8-82 (92)
19 cd05026 S-100Z S-100Z: S-100Z 99.4 7.4E-12 1.6E-16 74.1 8.3 67 28-95 10-83 (93)
20 KOG0037 Ca2+-binding protein, 99.4 1.3E-11 2.9E-16 81.9 9.9 84 3-94 106-189 (221)
21 smart00027 EH Eps15 homology d 99.3 1.6E-11 3.4E-16 73.0 8.2 66 26-94 8-73 (96)
22 KOG0030 Myosin essential light 99.3 1.8E-11 3.9E-16 76.2 8.0 90 24-114 7-98 (152)
23 PTZ00184 calmodulin; Provision 99.3 1.1E-10 2.4E-15 73.4 11.9 110 3-113 23-132 (149)
24 KOG0038 Ca2+-binding kinase in 99.3 1.7E-11 3.7E-16 77.1 7.7 92 3-94 83-178 (189)
25 PF13833 EF-hand_8: EF-hand do 99.3 1.8E-11 3.9E-16 65.2 6.8 52 41-93 1-53 (54)
26 cd00052 EH Eps15 homology doma 99.3 2.3E-11 5.1E-16 67.2 7.4 61 31-94 2-62 (67)
27 cd00213 S-100 S-100: S-100 dom 99.3 2E-11 4.4E-16 71.3 7.1 69 26-95 6-81 (88)
28 KOG0044 Ca2+ sensor (EF-Hand s 99.2 8.9E-11 1.9E-15 77.6 9.2 91 4-95 40-130 (193)
29 KOG0028 Ca2+-binding protein ( 99.2 5E-10 1.1E-14 71.3 11.4 109 3-113 45-154 (172)
30 KOG0036 Predicted mitochondria 99.2 1.3E-10 2.7E-15 83.6 9.2 86 3-95 63-148 (463)
31 cd05023 S-100A11 S-100A11: S-1 99.2 2E-10 4.3E-15 67.4 8.4 67 27-94 8-81 (89)
32 cd00051 EFh EF-hand, calcium b 99.2 1.3E-10 2.8E-15 62.3 7.1 61 30-91 2-62 (63)
33 PF14658 EF-hand_9: EF-hand do 99.1 3.7E-10 8E-15 62.2 6.8 61 32-93 2-64 (66)
34 cd00252 SPARC_EC SPARC_EC; ext 99.1 4.2E-10 9.1E-15 69.0 7.7 60 27-91 47-106 (116)
35 KOG0041 Predicted Ca2+-binding 99.1 5.9E-10 1.3E-14 73.5 8.2 76 28-104 99-174 (244)
36 cd05030 calgranulins Calgranul 99.1 1.2E-09 2.6E-14 64.0 7.0 67 28-95 8-81 (88)
37 KOG0031 Myosin regulatory ligh 99.0 5.4E-09 1.2E-13 66.3 8.9 79 28-113 32-110 (171)
38 PLN02964 phosphatidylserine de 99.0 6.4E-09 1.4E-13 79.5 9.5 80 28-112 143-226 (644)
39 PLN02964 phosphatidylserine de 98.8 4.7E-08 1E-12 74.8 10.8 64 30-94 181-244 (644)
40 cd05024 S-100A10 S-100A10: A s 98.8 8.4E-08 1.8E-12 56.2 8.3 66 28-95 8-78 (91)
41 PF13833 EF-hand_8: EF-hand do 98.8 5E-08 1.1E-12 51.7 6.7 52 4-56 1-53 (54)
42 PF00036 EF-hand_1: EF hand; 98.7 2.4E-08 5.3E-13 46.5 4.1 29 29-57 1-29 (29)
43 KOG0034 Ca2+/calmodulin-depend 98.7 5.5E-07 1.2E-11 59.6 10.8 89 4-97 47-136 (187)
44 PF12763 EF-hand_4: Cytoskelet 98.6 4.6E-07 9.9E-12 54.6 8.0 66 25-94 7-72 (104)
45 PF13405 EF-hand_6: EF-hand do 98.6 1.1E-07 2.4E-12 44.8 4.1 30 29-58 1-31 (31)
46 KOG0377 Protein serine/threoni 98.6 4.9E-07 1.1E-11 66.1 8.8 92 3-94 511-616 (631)
47 PF13499 EF-hand_7: EF-hand do 98.5 5.5E-07 1.2E-11 49.5 5.5 52 3-54 12-66 (66)
48 KOG4223 Reticulocalbin, calume 98.5 5.1E-07 1.1E-11 63.4 5.9 88 3-91 212-303 (325)
49 PF00036 EF-hand_1: EF hand; 98.5 3E-07 6.4E-12 42.8 3.3 28 66-93 1-28 (29)
50 KOG0037 Ca2+-binding protein, 98.4 4.4E-06 9.5E-11 55.9 9.9 101 4-111 70-170 (221)
51 KOG2643 Ca2+ binding protein, 98.4 3.1E-07 6.7E-12 66.8 3.0 91 4-98 212-319 (489)
52 KOG0036 Predicted mitochondria 98.3 1.2E-05 2.7E-10 58.4 10.7 64 29-93 15-79 (463)
53 PRK12309 transaldolase/EF-hand 98.2 1E-05 2.3E-10 59.1 8.2 58 23-94 329-386 (391)
54 PF14788 EF-hand_10: EF hand; 98.2 1.2E-05 2.5E-10 42.1 5.7 49 44-93 1-49 (51)
55 PF13202 EF-hand_5: EF hand; P 98.2 4.8E-06 1E-10 37.3 3.6 25 30-54 1-25 (25)
56 cd05022 S-100A13 S-100A13: S-1 98.1 9.5E-06 2.1E-10 47.5 5.6 56 3-58 21-77 (89)
57 cd05029 S-100A6 S-100A6: S-100 98.0 2.9E-05 6.4E-10 45.3 6.4 54 5-58 26-81 (88)
58 KOG0040 Ca2+-binding actin-bun 98.0 3.4E-05 7.3E-10 63.6 8.2 68 27-95 2252-2326(2399)
59 cd05026 S-100Z S-100Z: S-100Z 98.0 3.8E-05 8.2E-10 45.3 6.3 55 4-58 24-83 (93)
60 cd05027 S-100B S-100B: S-100B 98.0 4.7E-05 1E-09 44.5 6.4 56 3-58 21-81 (88)
61 cd05030 calgranulins Calgranul 97.9 3.5E-05 7.7E-10 44.9 5.5 55 4-58 23-81 (88)
62 cd00213 S-100 S-100: S-100 dom 97.9 6.4E-05 1.4E-09 43.6 6.0 56 3-58 22-81 (88)
63 cd00051 EFh EF-hand, calcium b 97.9 8.9E-05 1.9E-09 39.0 6.2 51 3-54 12-62 (63)
64 PF10591 SPARC_Ca_bdg: Secrete 97.9 6.4E-06 1.4E-10 50.3 1.7 61 26-89 52-112 (113)
65 cd05031 S-100A10_like S-100A10 97.9 6.2E-05 1.3E-09 44.3 5.8 54 5-58 24-81 (94)
66 KOG2562 Protein phosphatase 2 97.9 8.1E-05 1.8E-09 54.9 7.4 85 4-89 328-420 (493)
67 cd05023 S-100A11 S-100A11: S-1 97.8 9.6E-05 2.1E-09 43.3 6.2 53 6-58 26-82 (89)
68 cd00052 EH Eps15 homology doma 97.8 0.00012 2.7E-09 39.8 6.3 52 3-57 11-62 (67)
69 KOG4666 Predicted phosphate ac 97.8 4.2E-05 9.1E-10 54.3 5.2 89 3-93 271-359 (412)
70 smart00027 EH Eps15 homology d 97.8 0.00014 3E-09 42.9 6.5 52 3-57 22-73 (96)
71 KOG0046 Ca2+-binding actin-bun 97.8 0.00014 3.1E-09 54.4 7.7 67 28-96 19-88 (627)
72 KOG0751 Mitochondrial aspartat 97.8 0.00016 3.6E-09 53.9 7.4 53 3-58 86-138 (694)
73 cd05025 S-100A1 S-100A1: S-100 97.8 0.00014 3E-09 42.6 5.8 56 3-58 22-82 (92)
74 KOG4223 Reticulocalbin, calume 97.7 7.7E-05 1.7E-09 52.7 4.9 71 23-94 72-142 (325)
75 PF13202 EF-hand_5: EF hand; P 97.6 8.6E-05 1.9E-09 33.2 2.9 25 67-91 1-25 (25)
76 cd00252 SPARC_EC SPARC_EC; ext 97.6 0.00031 6.8E-09 43.1 5.9 47 3-54 60-106 (116)
77 PF13405 EF-hand_6: EF-hand do 97.5 0.00017 3.8E-09 33.6 3.3 27 66-92 1-27 (31)
78 cd05024 S-100A10 S-100A10: A s 97.5 0.00099 2.1E-08 39.1 6.6 55 4-58 20-78 (91)
79 smart00054 EFh EF-hand, calciu 97.5 0.00024 5.2E-09 31.3 3.3 27 30-56 2-28 (29)
80 KOG2643 Ca2+ binding protein, 97.4 0.00027 6E-09 51.9 4.8 82 7-94 372-454 (489)
81 KOG4065 Uncharacterized conser 97.3 0.0012 2.6E-08 40.4 5.8 60 31-90 70-142 (144)
82 PF14658 EF-hand_9: EF-hand do 97.3 0.003 6.4E-08 34.9 6.7 54 3-56 10-64 (66)
83 KOG4251 Calcium binding protei 97.2 0.00058 1.3E-08 47.0 4.0 69 26-94 99-169 (362)
84 PF09279 EF-hand_like: Phospho 97.2 0.0022 4.7E-08 36.7 5.7 70 29-99 1-75 (83)
85 smart00054 EFh EF-hand, calciu 97.1 0.00094 2E-08 29.3 2.9 27 67-93 2-28 (29)
86 KOG1029 Endocytic adaptor prot 96.7 0.0039 8.4E-08 49.1 5.1 66 26-94 193-258 (1118)
87 PRK12309 transaldolase/EF-hand 96.7 0.004 8.6E-08 45.8 5.0 41 3-57 346-386 (391)
88 PF14788 EF-hand_10: EF hand; 96.5 0.021 4.5E-07 29.9 5.8 49 8-57 2-50 (51)
89 PF12763 EF-hand_4: Cytoskelet 96.4 0.025 5.5E-07 34.0 6.6 52 3-57 21-72 (104)
90 KOG2562 Protein phosphatase 2 96.3 0.013 2.8E-07 43.7 5.7 107 3-113 237-363 (493)
91 PF08726 EFhand_Ca_insen: Ca2+ 96.1 0.003 6.5E-08 35.2 1.4 56 26-90 4-66 (69)
92 KOG0042 Glycerol-3-phosphate d 96.1 0.011 2.4E-07 45.2 4.6 75 28-103 593-667 (680)
93 KOG4666 Predicted phosphate ac 96.0 0.0076 1.6E-07 43.2 3.1 84 28-113 259-343 (412)
94 PLN02952 phosphoinositide phos 96.0 0.13 2.8E-06 40.0 9.8 89 3-93 12-110 (599)
95 KOG2243 Ca2+ release channel ( 95.8 0.02 4.4E-07 48.2 5.0 60 33-94 4062-4121(5019)
96 PF05517 p25-alpha: p25-alpha 95.8 0.1 2.2E-06 33.6 7.4 63 33-95 7-71 (154)
97 KOG0038 Ca2+-binding kinase in 95.8 0.031 6.7E-07 35.8 4.8 67 33-100 76-143 (189)
98 KOG0377 Protein serine/threoni 95.8 0.042 9.1E-07 41.1 6.2 56 3-58 559-617 (631)
99 KOG4578 Uncharacterized conser 95.6 0.0082 1.8E-07 43.0 2.0 66 27-95 332-400 (421)
100 KOG1955 Ral-GTPase effector RA 95.6 0.04 8.7E-07 41.7 5.5 64 27-93 230-293 (737)
101 KOG0040 Ca2+-binding actin-bun 95.3 0.14 3E-06 43.7 8.1 81 3-92 2308-2397(2399)
102 KOG4347 GTPase-activating prot 95.0 0.06 1.3E-06 41.8 5.0 76 8-85 535-610 (671)
103 KOG0751 Mitochondrial aspartat 94.9 0.32 7E-06 37.0 8.4 86 7-95 52-138 (694)
104 KOG4251 Calcium binding protei 94.6 0.1 2.2E-06 36.3 5.0 85 8-93 216-309 (362)
105 KOG3555 Ca2+-binding proteogly 94.6 0.12 2.5E-06 37.5 5.4 63 28-95 250-312 (434)
106 KOG3866 DNA-binding protein of 94.1 0.13 2.9E-06 36.8 4.8 66 33-99 249-330 (442)
107 KOG1265 Phospholipase C [Lipid 93.5 1.5 3.3E-05 35.8 10.0 85 8-97 205-303 (1189)
108 KOG0041 Predicted Ca2+-binding 93.2 1.2 2.7E-05 30.1 7.9 84 3-87 111-197 (244)
109 KOG2871 Uncharacterized conser 92.4 0.13 2.8E-06 37.6 2.6 67 25-92 306-373 (449)
110 PF09279 EF-hand_like: Phospho 91.6 0.61 1.3E-05 26.4 4.5 54 3-56 11-69 (83)
111 KOG0169 Phosphoinositide-speci 91.6 0.94 2E-05 36.0 6.7 67 28-95 136-202 (746)
112 PF08976 DUF1880: Domain of un 91.5 0.22 4.7E-06 30.5 2.6 33 61-93 3-35 (118)
113 PF05042 Caleosin: Caleosin re 91.5 1.4 3.1E-05 28.9 6.5 33 63-95 94-126 (174)
114 KOG0035 Ca2+-binding actin-bun 91.1 1.4 3.1E-05 35.8 7.3 71 27-98 746-821 (890)
115 KOG0998 Synaptic vesicle prote 89.8 0.14 3.1E-06 41.4 0.9 67 25-94 280-346 (847)
116 PF09069 EF-hand_3: EF-hand; 89.0 3.2 6.9E-05 24.3 8.0 63 28-94 3-76 (90)
117 KOG1029 Endocytic adaptor prot 88.1 3 6.5E-05 33.7 6.9 58 32-93 20-77 (1118)
118 KOG0039 Ferric reductase, NADH 85.6 2.6 5.7E-05 33.3 5.6 81 5-93 2-89 (646)
119 PF10591 SPARC_Ca_bdg: Secrete 85.5 0.29 6.3E-06 29.8 0.3 46 3-51 66-111 (113)
120 KOG0169 Phosphoinositide-speci 85.5 15 0.00032 29.7 9.4 86 3-94 148-233 (746)
121 KOG1707 Predicted Ras related/ 84.7 1.3 2.9E-05 34.4 3.4 58 28-92 315-376 (625)
122 KOG3449 60S acidic ribosomal p 84.6 4.2 9.1E-05 24.7 4.9 55 30-90 3-57 (112)
123 PF12174 RST: RCD1-SRO-TAF4 (R 83.8 2.9 6.3E-05 23.3 3.8 50 4-57 5-54 (70)
124 PLN02228 Phosphoinositide phos 82.2 11 0.00023 29.6 7.4 69 24-95 20-94 (567)
125 PLN02230 phosphoinositide phos 81.7 11 0.00024 29.6 7.4 69 24-94 25-103 (598)
126 KOG4347 GTPase-activating prot 80.7 3.2 6.8E-05 32.7 4.2 68 45-112 535-602 (671)
127 PF12174 RST: RCD1-SRO-TAF4 (R 80.6 1.6 3.4E-05 24.3 2.0 51 42-96 6-56 (70)
128 PLN02222 phosphoinositide phos 80.4 12 0.00027 29.3 7.3 67 26-95 23-92 (581)
129 PTZ00373 60S Acidic ribosomal 80.0 11 0.00024 23.0 6.3 54 30-89 5-58 (112)
130 TIGR01848 PHA_reg_PhaR polyhyd 79.9 11 0.00023 22.9 5.4 61 35-97 10-80 (107)
131 PF03672 UPF0154: Uncharacteri 79.7 4.6 0.0001 22.1 3.5 33 41-74 28-60 (64)
132 cd07313 terB_like_2 tellurium 78.9 3.1 6.7E-05 24.4 3.0 53 41-93 12-65 (104)
133 PF07308 DUF1456: Protein of u 78.7 9 0.00019 21.2 5.4 30 46-76 15-44 (68)
134 PRK00523 hypothetical protein; 77.2 5.7 0.00012 22.2 3.5 42 31-74 27-68 (72)
135 PF04876 Tenui_NCP: Tenuivirus 74.8 20 0.00043 23.2 5.9 43 5-56 97-139 (175)
136 PF05042 Caleosin: Caleosin re 74.6 7 0.00015 25.8 3.9 63 27-90 95-163 (174)
137 cd05833 Ribosomal_P2 Ribosomal 74.6 15 0.00032 22.3 5.1 57 31-93 4-60 (109)
138 PF09068 EF-hand_2: EF hand; 74.4 6.4 0.00014 24.5 3.6 29 29-57 98-126 (127)
139 cd08330 CARD_ASC_NALP1 Caspase 73.2 9.1 0.0002 21.8 3.8 54 40-99 25-78 (82)
140 cd00086 homeodomain Homeodomai 72.9 11 0.00024 19.3 5.2 39 27-73 12-50 (59)
141 TIGR01639 P_fal_TIGR01639 Plas 72.2 9.2 0.0002 20.5 3.5 32 42-74 7-38 (61)
142 COG3763 Uncharacterized protei 72.2 9.9 0.00022 21.2 3.6 43 31-75 26-68 (71)
143 PF01023 S_100: S-100/ICaBP ty 72.1 11 0.00023 18.9 3.9 29 28-56 6-36 (44)
144 PRK01844 hypothetical protein; 72.0 8.8 0.00019 21.5 3.4 42 31-74 26-67 (72)
145 PLN02223 phosphoinositide phos 71.6 23 0.00051 27.6 6.6 71 24-95 12-94 (537)
146 KOG4578 Uncharacterized conser 71.1 6.8 0.00015 28.6 3.5 53 4-56 346-398 (421)
147 PF07879 PHB_acc_N: PHB/PHA ac 69.6 12 0.00026 20.5 3.5 22 35-56 10-31 (64)
148 KOG0046 Ca2+-binding actin-bun 67.9 22 0.00048 27.7 5.7 56 3-58 30-87 (627)
149 PLN02952 phosphoinositide phos 67.8 23 0.0005 28.0 6.0 55 41-96 13-68 (599)
150 PF07499 RuvA_C: RuvA, C-termi 67.5 14 0.00031 18.5 3.6 37 48-89 4-40 (47)
151 COG4359 Uncharacterized conser 65.9 37 0.0008 23.0 5.9 77 4-94 10-88 (220)
152 PF11116 DUF2624: Protein of u 65.0 25 0.00054 20.4 6.2 31 44-75 14-44 (85)
153 PF00046 Homeobox: Homeobox do 64.2 18 0.00039 18.5 4.5 38 28-73 13-50 (57)
154 KOG4004 Matricellular protein 64.1 2.7 5.9E-05 28.4 0.4 60 33-95 192-252 (259)
155 PF03979 Sigma70_r1_1: Sigma-7 63.6 7.3 0.00016 22.1 2.1 44 29-77 8-51 (82)
156 cd07316 terB_like_DjlA N-termi 62.3 29 0.00062 20.1 4.8 8 42-49 13-20 (106)
157 KOG0998 Synaptic vesicle prote 61.9 5.8 0.00013 32.5 1.9 64 28-94 11-74 (847)
158 KOG3555 Ca2+-binding proteogly 61.4 13 0.00028 27.4 3.4 66 28-93 211-278 (434)
159 PF00404 Dockerin_1: Dockerin 61.2 12 0.00027 15.6 2.1 12 39-50 2-13 (21)
160 PLN00138 large subunit ribosom 61.0 36 0.00077 20.8 5.3 51 33-89 6-56 (113)
161 TIGR03573 WbuX N-acetyl sugar 59.5 29 0.00064 25.2 5.1 12 62-73 303-314 (343)
162 PF08461 HTH_12: Ribonuclease 57.5 15 0.00033 20.0 2.6 38 40-78 9-46 (66)
163 PF01885 PTS_2-RNA: RNA 2'-pho 57.4 28 0.00061 23.1 4.3 36 38-74 26-61 (186)
164 PRK00819 RNA 2'-phosphotransfe 55.8 43 0.00092 22.2 4.9 35 39-74 28-62 (179)
165 PF13331 DUF4093: Domain of un 53.7 42 0.00092 19.4 5.8 25 43-70 61-85 (87)
166 KOG2301 Voltage-gated Ca2+ cha 53.7 20 0.00042 31.7 3.7 69 24-95 1413-1486(1592)
167 PF09336 Vps4_C: Vps4 C termin 53.5 26 0.00056 18.9 3.0 26 44-70 29-54 (62)
168 KOG4070 Putative signal transd 53.2 39 0.00084 22.0 4.2 68 28-95 12-87 (180)
169 cd08327 CARD_RAIDD Caspase act 52.3 47 0.001 19.5 4.4 47 41-93 32-78 (94)
170 KOG0506 Glutaminase (contains 52.2 43 0.00093 25.9 4.9 62 31-93 89-158 (622)
171 cd08332 CARD_CASP2 Caspase act 51.7 46 0.001 19.2 4.2 48 41-94 31-78 (90)
172 COG2818 Tag 3-methyladenine DN 51.6 10 0.00023 25.2 1.5 63 8-72 36-98 (188)
173 KOG1954 Endocytosis/signaling 50.4 37 0.0008 25.6 4.3 57 30-90 446-502 (532)
174 KOG1955 Ral-GTPase effector RA 50.3 22 0.00047 27.6 3.2 33 25-57 262-294 (737)
175 cd08785 CARD_CARD9-like Caspas 49.7 39 0.00084 19.5 3.6 55 40-97 26-80 (86)
176 PF10643 Cytochrome-c551: Phot 48.6 49 0.0011 22.6 4.3 63 7-74 166-229 (233)
177 cd08324 CARD_NOD1_CARD4 Caspas 48.3 54 0.0012 19.0 4.9 50 40-95 25-74 (85)
178 PF09373 PMBR: Pseudomurein-bi 48.1 22 0.00048 16.5 2.0 15 5-19 2-16 (33)
179 cd08819 CARD_MDA5_2 Caspase ac 47.8 56 0.0012 19.1 5.5 53 41-97 30-82 (88)
180 cd04411 Ribosomal_P1_P2_L12p R 47.5 61 0.0013 19.5 7.4 43 45-93 17-59 (105)
181 PRK14981 DNA-directed RNA poly 47.3 40 0.00087 20.4 3.5 15 7-21 11-25 (112)
182 PF02885 Glycos_trans_3N: Glyc 46.2 47 0.001 17.8 3.9 39 28-69 18-56 (66)
183 TIGR02675 tape_meas_nterm tape 46.1 33 0.0007 19.1 2.8 17 40-56 26-42 (75)
184 KOG3077 Uncharacterized conser 46.0 1.1E+02 0.0023 21.7 7.7 70 25-97 61-133 (260)
185 COG4103 Uncharacterized protei 45.7 40 0.00088 21.6 3.4 59 31-93 33-94 (148)
186 TIGR00135 gatC glutamyl-tRNA(G 44.7 49 0.0011 19.0 3.6 29 45-74 1-29 (93)
187 cd08326 CARD_CASP9 Caspase act 44.3 61 0.0013 18.5 4.3 49 41-95 27-75 (84)
188 cd01671 CARD Caspase activatio 43.3 56 0.0012 17.8 3.6 49 41-95 24-72 (80)
189 cd08315 Death_TRAILR_DR4_DR5 D 41.6 73 0.0016 18.7 4.3 40 27-73 3-42 (96)
190 smart00389 HOX Homeodomain. DN 41.0 49 0.0011 16.5 5.1 38 28-73 13-50 (56)
191 PF06627 DUF1153: Protein of u 40.9 68 0.0015 18.8 3.6 33 42-80 47-79 (90)
192 PRK09430 djlA Dna-J like membr 39.8 1E+02 0.0022 21.7 5.1 50 40-95 67-122 (267)
193 cd08323 CARD_APAF1 Caspase act 39.4 62 0.0013 18.7 3.3 48 41-94 25-72 (86)
194 PF05099 TerB: Tellurite resis 39.4 11 0.00024 23.1 0.2 54 40-93 35-89 (140)
195 KOG4403 Cell surface glycoprot 39.1 82 0.0018 24.1 4.6 97 7-108 44-146 (575)
196 PF12419 DUF3670: SNF2 Helicas 38.9 93 0.002 19.5 4.4 49 41-89 80-137 (141)
197 PRK06402 rpl12p 50S ribosomal 38.8 90 0.0019 18.9 5.5 40 44-89 16-55 (106)
198 PRK00034 gatC aspartyl/glutamy 38.5 72 0.0016 18.3 3.6 30 44-74 2-31 (95)
199 PF14513 DAG_kinase_N: Diacylg 38.5 1E+02 0.0022 19.5 6.4 72 1-76 1-80 (138)
200 PF10897 DUF2713: Protein of u 38.4 81 0.0017 21.5 4.1 41 5-45 175-226 (246)
201 PF11829 DUF3349: Protein of u 37.8 89 0.0019 18.5 4.9 45 28-72 39-83 (96)
202 KOG1707 Predicted Ras related/ 37.8 88 0.0019 24.9 4.8 62 28-90 195-262 (625)
203 COG1460 Uncharacterized protei 37.2 63 0.0014 19.8 3.2 14 7-20 12-25 (114)
204 PF06384 ICAT: Beta-catenin-in 36.9 53 0.0012 18.7 2.7 22 49-71 21-42 (78)
205 PHA03155 hypothetical protein; 36.9 1E+02 0.0022 18.9 5.3 90 1-94 1-90 (115)
206 PF12875 DUF3826: Protein of u 36.8 38 0.00083 22.6 2.4 55 53-109 86-140 (188)
207 KOG0843 Transcription factor E 35.6 90 0.0019 20.9 3.9 38 28-73 115-152 (197)
208 PF08044 DUF1707: Domain of un 35.6 62 0.0013 16.8 2.7 31 41-72 20-50 (53)
209 KOG0035 Ca2+-binding actin-bun 35.3 1.6E+02 0.0035 24.7 6.0 46 6-52 803-848 (890)
210 PF03732 Retrotrans_gag: Retro 35.0 83 0.0018 17.3 4.9 13 44-56 26-38 (96)
211 PF13623 SurA_N_2: SurA N-term 34.8 1.2E+02 0.0026 19.2 7.5 25 46-71 91-115 (145)
212 PF13829 DUF4191: Domain of un 34.6 1E+02 0.0023 21.2 4.3 35 39-74 162-196 (224)
213 PF05517 p25-alpha: p25-alpha 34.4 1.3E+02 0.0027 19.3 5.9 53 6-58 17-71 (154)
214 PF04282 DUF438: Family of unk 34.0 89 0.0019 17.4 4.8 48 21-72 9-56 (71)
215 PF04361 DUF494: Protein of un 34.0 1.3E+02 0.0028 19.4 5.0 41 29-72 4-45 (155)
216 COG2058 RPP1A Ribosomal protei 33.4 1.1E+02 0.0025 18.5 5.9 52 34-92 7-58 (109)
217 COG3426 Butyrate kinase [Energ 33.3 1.3E+02 0.0028 21.9 4.7 52 39-97 213-267 (358)
218 cd08329 CARD_BIRC2_BIRC3 Caspa 32.5 66 0.0014 18.8 2.8 51 41-97 34-84 (94)
219 PF02761 Cbl_N2: CBL proto-onc 32.3 1.1E+02 0.0023 17.8 6.0 51 41-92 19-69 (85)
220 TIGR00624 tag DNA-3-methyladen 31.6 23 0.00049 23.5 0.7 61 27-91 52-116 (179)
221 PF02671 PAH: Paired amphipath 30.8 75 0.0016 15.6 3.9 15 43-57 17-31 (47)
222 PLN00153 histone H2A; Provisio 30.1 1.5E+02 0.0031 18.7 4.6 63 11-84 48-110 (129)
223 PF03963 FlgD: Flagellar hook 29.7 77 0.0017 18.0 2.7 19 5-23 28-46 (81)
224 PF03874 RNA_pol_Rpb4: RNA pol 29.3 63 0.0014 19.3 2.4 45 25-75 54-98 (117)
225 PF02037 SAP: SAP domain; Int 29.3 64 0.0014 15.0 2.0 15 44-58 3-17 (35)
226 PF08349 DUF1722: Protein of u 29.2 1.4E+02 0.0029 18.0 4.3 47 48-95 53-99 (117)
227 PF01988 VIT1: VIT family; In 29.2 1.2E+02 0.0026 20.3 4.0 32 45-79 80-111 (213)
228 PF10982 DUF2789: Protein of u 29.1 1.1E+02 0.0024 17.2 3.1 35 48-83 6-40 (74)
229 PF10668 Phage_terminase: Phag 28.9 1E+02 0.0022 16.6 3.3 34 30-70 9-42 (60)
230 cd00074 H2A Histone 2A; H2A is 28.0 1.5E+02 0.0032 18.1 5.4 48 29-83 58-105 (115)
231 PTZ00017 histone H2A; Provisio 27.8 1.6E+02 0.0036 18.6 4.8 62 12-84 52-113 (134)
232 KOG4286 Dystrophin-like protei 27.2 64 0.0014 26.5 2.6 53 29-82 471-523 (966)
233 COG5502 Uncharacterized conser 27.1 1.7E+02 0.0037 18.5 5.7 50 5-58 73-125 (135)
234 PRK09462 fur ferric uptake reg 27.1 1.6E+02 0.0036 18.3 4.5 43 30-73 19-61 (148)
235 PRK10353 3-methyl-adenine DNA 26.6 22 0.00048 23.7 0.1 63 27-91 53-119 (187)
236 COG5562 Phage envelope protein 26.5 41 0.00089 21.3 1.2 16 4-19 85-100 (137)
237 PF08414 NADPH_Ox: Respiratory 26.5 1.5E+02 0.0033 17.7 7.3 60 28-93 30-92 (100)
238 PF07128 DUF1380: Protein of u 26.4 1.2E+02 0.0026 19.3 3.3 31 45-76 27-57 (139)
239 COG0721 GatC Asp-tRNAAsn/Glu-t 26.1 1.4E+02 0.0031 17.5 3.5 30 44-74 2-31 (96)
240 cd05831 Ribosomal_P1 Ribosomal 25.8 1.6E+02 0.0034 17.6 5.0 46 40-91 13-58 (103)
241 PF04963 Sigma54_CBD: Sigma-54 25.5 2.1E+02 0.0045 19.0 5.5 48 38-89 44-94 (194)
242 smart00513 SAP Putative DNA-bi 25.5 84 0.0018 14.4 2.4 15 44-58 3-17 (35)
243 COG1955 FlaJ Archaeal flagella 25.2 2.6E+02 0.0055 22.0 5.3 24 50-74 105-128 (527)
244 PF02864 STAT_bind: STAT prote 25.0 1.5E+02 0.0033 20.8 3.9 65 43-111 177-250 (254)
245 PRK03430 hypothetical protein; 24.9 2E+02 0.0043 18.7 4.2 39 30-71 5-44 (157)
246 smart00657 RPOL4c DNA-directed 24.2 1.3E+02 0.0028 18.2 3.2 12 63-74 84-95 (118)
247 PLN00157 histone H2A; Provisio 24.2 2E+02 0.0042 18.2 4.1 63 11-84 50-112 (132)
248 TIGR01565 homeo_ZF_HD homeobox 23.6 98 0.0021 16.5 2.2 36 28-71 14-53 (58)
249 PF12244 DUF3606: Protein of u 23.4 1.3E+02 0.0028 15.8 3.3 24 48-74 21-44 (57)
250 PF10398 DUF2443: Protein of u 23.1 1.6E+02 0.0034 16.7 4.2 42 63-111 15-56 (79)
251 PLN00156 histone H2AX; Provisi 23.1 2.1E+02 0.0046 18.2 4.7 63 11-84 53-115 (139)
252 PF00690 Cation_ATPase_N: Cati 22.7 1.3E+02 0.0027 16.0 2.7 26 33-58 9-34 (69)
253 TIGR03685 L21P_arch 50S riboso 22.5 1.9E+02 0.0041 17.4 5.5 41 44-90 16-56 (105)
254 PF11181 YflT: Heat induced st 22.3 1.7E+02 0.0036 17.1 3.3 26 48-76 71-96 (103)
255 KOG4301 Beta-dystrobrevin [Cyt 22.3 1.6E+02 0.0035 21.9 3.7 60 31-92 113-172 (434)
256 PF12674 Zn_ribbon_2: Putative 22.2 1.5E+02 0.0033 16.8 3.0 14 8-21 42-55 (81)
257 COG5394 Uncharacterized protei 21.8 2.5E+02 0.0054 18.6 4.5 59 35-95 19-88 (193)
258 smart00414 H2A Histone 2A. 21.7 2E+02 0.0043 17.3 4.4 61 12-83 34-94 (106)
259 PF03997 VPS28: VPS28 protein; 21.3 2.7E+02 0.0058 18.7 4.4 41 43-89 141-185 (188)
260 PF06207 DUF1002: Protein of u 21.2 2E+02 0.0044 19.8 3.9 46 46-92 173-222 (225)
261 cd00171 Sec7 Sec7 domain; Doma 21.2 2.3E+02 0.0051 18.6 4.1 36 74-110 142-177 (185)
262 PLN02230 phosphoinositide phos 21.2 2.6E+02 0.0056 22.4 4.8 32 63-95 27-58 (598)
263 PF15601 Imm42: Immunity prote 21.1 2.3E+02 0.005 17.9 4.1 46 10-58 18-63 (134)
264 PF04558 tRNA_synt_1c_R1: Glut 20.8 74 0.0016 20.7 1.6 47 26-74 83-129 (164)
265 cd08313 Death_TNFR1 Death doma 20.8 1.8E+02 0.0039 16.5 3.1 25 44-71 8-32 (80)
266 PF01475 FUR: Ferric uptake re 20.8 2E+02 0.0043 17.0 3.8 31 43-74 22-52 (120)
267 PF11593 Med3: Mediator comple 20.7 3.7E+02 0.0081 20.2 5.4 12 83-94 44-55 (379)
268 COG4003 Uncharacterized protei 20.7 65 0.0014 18.7 1.2 13 63-75 46-58 (98)
269 TIGR03830 CxxCG_CxxCG_HTH puta 20.6 2E+02 0.0044 17.1 4.2 30 39-71 59-88 (127)
270 smart00222 Sec7 Sec7 domain. D 20.5 2.1E+02 0.0046 18.8 3.8 37 74-111 144-180 (187)
271 TIGR01529 argR_whole arginine 20.3 2.4E+02 0.0052 17.8 4.0 35 40-75 12-46 (146)
272 COG1508 RpoN DNA-directed RNA 20.3 4.1E+02 0.0089 20.5 9.8 85 6-94 88-175 (444)
273 COG1859 KptA RNA:NAD 2'-phosph 20.2 2.4E+02 0.0052 19.3 4.0 36 39-75 54-89 (211)
274 cd07176 terB tellurite resista 20.1 54 0.0012 18.9 0.9 8 42-49 16-23 (111)
275 cd07357 HN_L-whirlin_R2_like S 20.0 1.1E+02 0.0024 17.5 2.0 34 62-95 16-49 (81)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.83 E-value=9.2e-20 Score=116.60 Aligned_cols=89 Identities=34% Similarity=0.511 Sum_probs=85.1
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
+++.|+|.+|+.+|+..+....+.+++.++|+.||++++|+|+.++|+.+++.+| ..+++++++.+++.++.+++|.|+
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~ 146 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEID 146 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEe
Confidence 4589999999999999998888899999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 033591 84 EMEFCTLMFR 93 (115)
Q Consensus 84 ~~eF~~~l~~ 93 (115)
|++|+..+..
T Consensus 147 ~~eF~~~~~~ 156 (160)
T COG5126 147 YEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-17 Score=106.68 Aligned_cols=90 Identities=33% Similarity=0.508 Sum_probs=81.7
Q ss_pred CCCCCccHHHHHHHHHHhhCCcC----hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEG----FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDG 78 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~----~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~ 78 (115)
+++|.|++.+|+.++........ ..++++.+|+.||++++|+||..||+.+|+.+| .+.+.+++..++..++.++
T Consensus 56 dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~ 134 (151)
T KOG0027|consen 56 DGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDG 134 (151)
T ss_pred CCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCC
Confidence 46799999999999987765433 345999999999999999999999999999999 9999999999999999999
Q ss_pred CCcccHHHHHHHHHh
Q 033591 79 DGALNEMEFCTLMFR 93 (115)
Q Consensus 79 ~g~I~~~eF~~~l~~ 93 (115)
+|.|+|.+|++++..
T Consensus 135 dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 135 DGKVNFEEFVKMMSG 149 (151)
T ss_pred CCeEeHHHHHHHHhc
Confidence 999999999999864
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=2.9e-15 Score=94.89 Aligned_cols=90 Identities=40% Similarity=0.653 Sum_probs=85.4
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
+.|.|+|++|+..++..+....+.+++..+|+.+|.+++|.|+..+|+.+...|| .+++++++..++..++.+++|-|+
T Consensus 82 ~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevn 160 (172)
T KOG0028|consen 82 GSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVN 160 (172)
T ss_pred cCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhccccccccc
Confidence 4689999999999999888888999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 033591 84 EMEFCTLMFRL 94 (115)
Q Consensus 84 ~~eF~~~l~~~ 94 (115)
-++|..+|++.
T Consensus 161 eeEF~~imk~t 171 (172)
T KOG0028|consen 161 EEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHhcC
Confidence 99999998754
No 4
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.61 E-value=1.2e-14 Score=91.65 Aligned_cols=94 Identities=26% Similarity=0.358 Sum_probs=88.3
Q ss_pred CCCCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCC
Q 033591 1 MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDG 80 (115)
Q Consensus 1 ~~~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g 80 (115)
|...+|.|+|.-||.++...++..++++.+..+|+.||+++.|.|..+.|+++|...| .+++++||+.++..+..+..|
T Consensus 74 ~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G 152 (171)
T KOG0031|consen 74 MKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKG 152 (171)
T ss_pred HHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCC
Confidence 3467899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccHHHHHHHHHhhC
Q 033591 81 ALNEMEFCTLMFRLS 95 (115)
Q Consensus 81 ~I~~~eF~~~l~~~~ 95 (115)
.|+|..|+.++.+..
T Consensus 153 ~~dy~~~~~~ithG~ 167 (171)
T KOG0031|consen 153 NFDYKAFTYIITHGE 167 (171)
T ss_pred ceeHHHHHHHHHccc
Confidence 999999999998543
No 5
>PTZ00183 centrin; Provisional
Probab=99.60 E-value=2.2e-14 Score=91.58 Aligned_cols=90 Identities=36% Similarity=0.629 Sum_probs=72.4
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+++|.|+|.+|+.++............++.+|+.+|.+++|+|+..+|..++..+| ..+++.++..++..++.+++|.|
T Consensus 65 ~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i 143 (158)
T PTZ00183 65 DGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEI 143 (158)
T ss_pred CCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcC
Confidence 35677888888887765544445556788888888888888888888888888888 78888888888888888888888
Q ss_pred cHHHHHHHHHh
Q 033591 83 NEMEFCTLMFR 93 (115)
Q Consensus 83 ~~~eF~~~l~~ 93 (115)
+|++|+.++..
T Consensus 144 ~~~ef~~~~~~ 154 (158)
T PTZ00183 144 SEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHhc
Confidence 88888888764
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.60 E-value=2.8e-14 Score=90.01 Aligned_cols=89 Identities=30% Similarity=0.576 Sum_probs=72.8
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+++|.|+|++|+.++...+........+..+|+.+|.+++|+|+..++..++..+| ..++.+++..++..++.+++|+|
T Consensus 59 ~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i 137 (149)
T PTZ00184 59 DGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQI 137 (149)
T ss_pred CCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcC
Confidence 35678889998888776554444556788889999999999999999998888888 77888888888888888888999
Q ss_pred cHHHHHHHHH
Q 033591 83 NEMEFCTLMF 92 (115)
Q Consensus 83 ~~~eF~~~l~ 92 (115)
+|.+|+.++.
T Consensus 138 ~~~ef~~~~~ 147 (149)
T PTZ00184 138 NYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHh
Confidence 9999988765
No 7
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.55 E-value=3.3e-14 Score=83.38 Aligned_cols=68 Identities=22% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhcC-CCCCceeHHHHHHHHHh-cCCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 27 MQELSNGFRLLMD-EDKGLITFESLKKNSAL-LGLQDMSD-EELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 27 ~~~~~~~F~~~D~-~~~g~i~~~el~~~l~~-~~~~~~~~-~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
...+..+|+.||+ +++|+|+..||+.+++. +| ..++. +++..+++.+|.+++|.|+|+||+.++....
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3578999999999 99999999999999999 99 88888 9999999999999999999999999987663
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.53 E-value=1.9e-13 Score=90.05 Aligned_cols=91 Identities=27% Similarity=0.378 Sum_probs=76.5
Q ss_pred CCCC-ccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCC--HHHH----HHHHHhcCC
Q 033591 4 ANSG-VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMS--DEEL----MCMLREGDL 76 (115)
Q Consensus 4 ~~~~-i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~--~~e~----~~~~~~~d~ 76 (115)
++|. |+|.+|+..++..........+++.+|++||.+++|+|+.+++..++..+.....+ ++.+ ++++..+|.
T Consensus 79 ~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 79 GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADT 158 (187)
T ss_pred CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCC
Confidence 3444 99999999999998877777799999999999999999999999999987314444 4544 556788999
Q ss_pred CCCCcccHHHHHHHHHhh
Q 033591 77 DGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 77 ~~~g~I~~~eF~~~l~~~ 94 (115)
+++|+|+++||++++.+.
T Consensus 159 d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CCCCcCcHHHHHHHHHcC
Confidence 999999999999998754
No 9
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.52 E-value=1e-13 Score=76.82 Aligned_cols=62 Identities=39% Similarity=0.576 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHH----HHHHHhcCCCCCCcccHHHHHHHH
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEEL----MCMLREGDLDGDGALNEMEFCTLM 91 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~----~~~~~~~d~~~~g~I~~~eF~~~l 91 (115)
+++.+|+.+|.+++|+|+.+||..+++.++ ...++.++ ..+++.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLG-RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTT-SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998 76655554 445999999999999999999875
No 10
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.50 E-value=3.2e-13 Score=86.62 Aligned_cols=85 Identities=27% Similarity=0.327 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc-ccccchhHH
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSP-GLMKNSTNL 105 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~-~~~~~~~~~ 105 (115)
.++++++|..+|++++|.|+.++|..+++.+| .+++..++.+++..++. +++.|+|.+|+.+|....+ ..+++...|
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~ 96 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELRE 96 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHH
Confidence 36899999999999999999999999999999 99999999999999998 8899999999999988764 455677888
Q ss_pred HHHHhcCC
Q 033591 106 FLEALNVD 113 (115)
Q Consensus 106 ~~~~~~~~ 113 (115)
.++.+|.|
T Consensus 97 aF~~fD~d 104 (160)
T COG5126 97 AFKLFDKD 104 (160)
T ss_pred HHHHhCCC
Confidence 88888876
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.48 E-value=3.9e-13 Score=78.78 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=61.2
Q ss_pred HHHHHHHHhhc-CCCCC-ceeHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 28 QELSNGFRLLM-DEDKG-LITFESLKKNSAL-----LGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 28 ~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
..++.+|+.|| ++++| .|+..+|+.+|+. +| ...+++++..+++.+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57899999998 79999 5999999999999 89 88899999999999999999999999999988754
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=5.6e-13 Score=85.24 Aligned_cols=87 Identities=36% Similarity=0.492 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccc--hhH
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKN--STN 104 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~--~~~ 104 (115)
..++..+|+.||++++|+|+..+|..+++.+| ..+++.++..+++.+|.+++|.|++.+|+.++.......... ...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 46799999999999999999999999999999 999999999999999999999999999999998776543322 344
Q ss_pred HHHHHhcCCC
Q 033591 105 LFLEALNVDD 114 (115)
Q Consensus 105 ~~~~~~~~~~ 114 (115)
.+.+++.+.|
T Consensus 86 el~eaF~~fD 95 (151)
T KOG0027|consen 86 ELKEAFRVFD 95 (151)
T ss_pred HHHHHHHHHc
Confidence 5555555443
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.47 E-value=4.8e-13 Score=88.34 Aligned_cols=90 Identities=22% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc----CC------CCCCHHHHHHHHH
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL----GL------QDMSDEELMCMLR 72 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----~~------~~~~~~e~~~~~~ 72 (115)
+++|.|+|.||+.+++..+++ ...+.+.++|++||.+++|+|+.+|+..+++.. +. ...+++-+.++|+
T Consensus 76 ~~dg~i~F~Efi~als~~~rG-t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~ 154 (193)
T KOG0044|consen 76 NKDGTIDFLEFICALSLTSRG-TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFS 154 (193)
T ss_pred cCCCCcCHHHHHHHHHHHcCC-cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHH
Confidence 678999999999999887764 556889999999999999999999998877763 30 1124556788999
Q ss_pred hcCCCCCCcccHHHHHHHHHh
Q 033591 73 EGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 73 ~~d~~~~g~I~~~eF~~~l~~ 93 (115)
.+|.|++|.|+++||+.....
T Consensus 155 k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 155 KMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HcCCCCCCcccHHHHHHHhhh
Confidence 999999999999999987653
No 14
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.42 E-value=2e-12 Score=80.34 Aligned_cols=85 Identities=24% Similarity=0.437 Sum_probs=74.6
Q ss_pred CCccHHHHHHHHHHhhCC--cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 6 SGVVFEDFFPAMVEKLGA--EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 6 ~~i~~~eFl~~~~~~~~~--~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
..|+|++|+.++....++ ..+-+.+.+..+.||++++|.|...||+++|..+| ..++++|++.+++.. .+++|.|.
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~-eD~nG~i~ 141 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQ-EDSNGCIN 141 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHccc-cccCCcCc
Confidence 469999999988766543 34568999999999999999999999999999999 999999999999876 45689999
Q ss_pred HHHHHHHHH
Q 033591 84 EMEFCTLMF 92 (115)
Q Consensus 84 ~~eF~~~l~ 92 (115)
|+.|++.+.
T Consensus 142 YE~fVk~i~ 150 (152)
T KOG0030|consen 142 YEAFVKHIM 150 (152)
T ss_pred HHHHHHHHh
Confidence 999998765
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.38 E-value=4.7e-12 Score=75.01 Aligned_cols=67 Identities=24% Similarity=0.286 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcC-CC-CCceeHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 27 MQELSNGFRLLMD-ED-KGLITFESLKKNSAL-----LGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 27 ~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
...++.+|+.||. ++ +|+|+..||+.+++. +| ..++++++..+++.+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3578999999997 87 799999999999986 56 67899999999999999999999999999988754
No 16
>PTZ00183 centrin; Provisional
Probab=99.37 E-value=3.6e-11 Score=76.62 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=87.1
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL-GLQDMSDEELMCMLREGDLDGDGA 81 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~e~~~~~~~~d~~~~g~ 81 (115)
+++|.|++.+|..++... ........+..+|+.+|.+++|.|+..+|..++... . ...+++.+..+|+.+|.+++|.
T Consensus 29 ~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~-~~~~~~~l~~~F~~~D~~~~G~ 106 (158)
T PTZ00183 29 DGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLG-ERDPREEILKAFRLFDDDKTGK 106 (158)
T ss_pred CCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhc-CCCcHHHHHHHHHHhCCCCCCc
Confidence 568899999999988644 223445689999999999999999999999887664 3 4556788899999999999999
Q ss_pred ccHHHHHHHHHhhCcccccchhHHHHHHhcCC
Q 033591 82 LNEMEFCTLMFRLSPGLMKNSTNLFLEALNVD 113 (115)
Q Consensus 82 I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 113 (115)
|+..+|..++......+.+.....++..++.+
T Consensus 107 i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~ 138 (158)
T PTZ00183 107 ISLKNLKRVAKELGETITDEELQEMIDEADRN 138 (158)
T ss_pred CcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Confidence 99999999998766666555566666766654
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.37 E-value=6e-12 Score=73.73 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcC-CC-CCceeHHHHHHHHHh---cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLMD-ED-KGLITFESLKKNSAL---LGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~---~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+..+|+.|+. ++ +|+|+..||+.+++. +| .+++++++.++++.+|.+++|+|+|++|+.++....
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 468889999997 66 899999999999973 68 889999999999999999999999999999987653
No 18
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.37 E-value=7.3e-12 Score=73.88 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhc-CCCCCc-eeHHHHHHHHHh-cCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 27 MQELSNGFRLLM-DEDKGL-ITFESLKKNSAL-LGL---QDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 27 ~~~~~~~F~~~D-~~~~g~-i~~~el~~~l~~-~~~---~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
.+.++++|+.|| .+++|+ |+..||+.+|+. +|. ..++++++..+++.+|.+++|.|+|++|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 357999999997 999995 999999999986 540 346889999999999999999999999999987653
No 19
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.36 E-value=7.4e-12 Score=74.09 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=58.3
Q ss_pred HHHHHHHHhhc-CCCCC-ceeHHHHHHHHHh-c----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLM-DEDKG-LITFESLKKNSAL-L----GLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~----~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+..+|+.|| ++++| +|+..||+.+++. + + ...++.++.++++.+|.+++|.|+|+||+.++....
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 56888999999 78998 5999999999976 2 3 345788999999999999999999999999998763
No 20
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-11 Score=81.93 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+..|+|.|.||.++.... ..++.+|+.||.|+.|.|+..||+.+|..+| ..++++-.+.+++.++..++|.|
T Consensus 106 ~~~G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i 177 (221)
T KOG0037|consen 106 DNSGTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRI 177 (221)
T ss_pred CCCCccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCce
Confidence 567899999999976432 5799999999999999999999999999999 99999999999999998889999
Q ss_pred cHHHHHHHHHhh
Q 033591 83 NEMEFCTLMFRL 94 (115)
Q Consensus 83 ~~~eF~~~l~~~ 94 (115)
.+++|+.++...
T Consensus 178 ~FD~FI~ccv~L 189 (221)
T KOG0037|consen 178 DFDDFIQCCVVL 189 (221)
T ss_pred eHHHHHHHHHHH
Confidence 999999887643
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.32 E-value=1.6e-11 Score=72.99 Aligned_cols=66 Identities=24% Similarity=0.263 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
....+..+|..+|.+++|.|+..+++.+++..+ ++++++.+++..++.+++|.|+|++|+.++...
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 346799999999999999999999999999977 688999999999999999999999999988655
No 22
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.31 E-value=1.8e-11 Score=76.15 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=81.2
Q ss_pred cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC--CCCcccHHHHHHHHHhhCcccccc
Q 033591 24 EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLD--GDGALNEMEFCTLMFRLSPGLMKN 101 (115)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~--~~g~I~~~eF~~~l~~~~~~~~~~ 101 (115)
++...+++++|..||..++|+|+..++..+|+.+| .++++.++.+.+.++..+ +-.+|+|++|+.+++...++....
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 45668999999999999999999999999999999 999999999999998776 447899999999999998887788
Q ss_pred hhHHHHHHhcCCC
Q 033591 102 STNLFLEALNVDD 114 (115)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (115)
+...+.+.+.+.|
T Consensus 86 t~edfvegLrvFD 98 (152)
T KOG0030|consen 86 TYEDFVEGLRVFD 98 (152)
T ss_pred cHHHHHHHHHhhc
Confidence 8888888888876
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.31 E-value=1.1e-10 Score=73.44 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+++|.|++.+|..++... ........+..+|+.+|.+++|.|+.+++..++............+..+|+.+|.+++|.|
T Consensus 23 ~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i 101 (149)
T PTZ00184 23 DGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFI 101 (149)
T ss_pred CCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeE
Confidence 568899999999987543 3234456899999999999999999999999887653134456678889999999999999
Q ss_pred cHHHHHHHHHhhCcccccchhHHHHHHhcCC
Q 033591 83 NEMEFCTLMFRLSPGLMKNSTNLFLEALNVD 113 (115)
Q Consensus 83 ~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 113 (115)
+..+|..++........+.....++..+|.+
T Consensus 102 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 132 (149)
T PTZ00184 102 SAAELRHVMTNLGEKLTDEEVDEMIREADVD 132 (149)
T ss_pred eHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC
Confidence 9999999998765555544455555555543
No 24
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.30 E-value=1.7e-11 Score=77.07 Aligned_cols=92 Identities=25% Similarity=0.373 Sum_probs=78.3
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHH----HHHHhcCCCC
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELM----CMLREGDLDG 78 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~----~~~~~~d~~~ 78 (115)
.+.|.+||++|+.+++..+...+..-++..+|+++|-++++.|...+|...++++.-..++++|+. +++...|.++
T Consensus 83 DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~Dg 162 (189)
T KOG0038|consen 83 DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDG 162 (189)
T ss_pred CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Confidence 356789999999999988766555568888999999999999999999999998852468888875 4577899999
Q ss_pred CCcccHHHHHHHHHhh
Q 033591 79 DGALNEMEFCTLMFRL 94 (115)
Q Consensus 79 ~g~I~~~eF~~~l~~~ 94 (115)
+|++++.+|.+++.+.
T Consensus 163 Dgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 163 DGKLSFAEFEHVILRA 178 (189)
T ss_pred CCcccHHHHHHHHHhC
Confidence 9999999999988753
No 25
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.30 E-value=1.8e-11 Score=65.24 Aligned_cols=52 Identities=38% Similarity=0.552 Sum_probs=48.6
Q ss_pred CCCceeHHHHHHHHHhcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 41 DKGLITFESLKKNSALLGLQD-MSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~-~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
.+|.|+.++|+.+++.+| .. ++++++..++..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998889 88 99999999999999999999999999999864
No 26
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.30 E-value=2.3e-11 Score=67.17 Aligned_cols=61 Identities=26% Similarity=0.335 Sum_probs=56.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
+.+|+.+|++++|.|+.+|++.+++.+| .+++++..+++.++.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999988 488999999999999999999999999988654
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.29 E-value=2e-11 Score=71.30 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhcC--CCCCceeHHHHHHHHHh-cCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 26 FMQELSNGFRLLMD--EDKGLITFESLKKNSAL-LGLQDM----SDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 26 ~~~~~~~~F~~~D~--~~~g~i~~~el~~~l~~-~~~~~~----~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+.++.+|..||. +++|.|+..+|..+++. +| .++ +..++..++..++.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34678999999999 89999999999999986 55 444 589999999999999999999999999987653
No 28
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=8.9e-11 Score=77.63 Aligned_cols=91 Identities=20% Similarity=0.245 Sum_probs=82.1
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
.+|.++-++|..+.+......++..-...+|+.||.+++|.|+..|+..++..+. ....++.+...|+.+|.+++|+|+
T Consensus 40 P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEc
Confidence 4789999999999998887677777889999999999999999999999999887 778888899899999999999999
Q ss_pred HHHHHHHHHhhC
Q 033591 84 EMEFCTLMFRLS 95 (115)
Q Consensus 84 ~~eF~~~l~~~~ 95 (115)
++|+++++....
T Consensus 119 ~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 119 KEEMLKIVQAIY 130 (193)
T ss_pred HHHHHHHHHHHH
Confidence 999999887663
No 29
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=5e-10 Score=71.28 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=84.8
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh-cCCCCCCHHHHHHHHHhcCCCCCCc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSAL-LGLQDMSDEELMCMLREGDLDGDGA 81 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~e~~~~~~~~d~~~~g~ 81 (115)
...|+|++.|+-.++...-. ....+++.++..-+|+++.|.|+.++|..+++. ++ ..-+.+++.+.|+.+|.+++|+
T Consensus 45 ~~~g~iD~~EL~vAmralGF-E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~-e~dt~eEi~~afrl~D~D~~Gk 122 (172)
T KOG0028|consen 45 DMAGKIDVEELKVAMRALGF-EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG-ERDTKEEIKKAFRLFDDDKTGK 122 (172)
T ss_pred CCCCcccHHHHHHHHHHcCC-CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh-ccCcHHHHHHHHHcccccCCCC
Confidence 45788999998665544322 234567888888888999999999999888765 46 6668899999999999999999
Q ss_pred ccHHHHHHHHHhhCcccccchhHHHHHHhcCC
Q 033591 82 LNEMEFCTLMFRLSPGLMKNSTNLFLEALNVD 113 (115)
Q Consensus 82 I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 113 (115)
|+..+|+.+.+...+.+.++.-.-+.+.++.|
T Consensus 123 is~~~lkrvakeLgenltD~El~eMIeEAd~d 154 (172)
T KOG0028|consen 123 ISQRNLKRVAKELGENLTDEELMEMIEEADRD 154 (172)
T ss_pred cCHHHHHHHHHHhCccccHHHHHHHHHHhccc
Confidence 99999999999888887776666666666654
No 30
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.21 E-value=1.3e-10 Score=83.58 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=77.9
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+.+|.++|++|...+.. .+.++..+|...|.+++|.|...|+...|+.+| .+++.++++++++.+|.++++.|
T Consensus 63 ~~dg~vDy~eF~~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I 135 (463)
T KOG0036|consen 63 NRDGRVDYSEFKRYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATI 135 (463)
T ss_pred CcCCcccHHHHHHHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeee
Confidence 56899999999888753 346799999999999999999999999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHhhC
Q 033591 83 NEMEFCTLMFRLS 95 (115)
Q Consensus 83 ~~~eF~~~l~~~~ 95 (115)
+++||...+....
T Consensus 136 ~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 136 DLEEWRDHLLLYP 148 (463)
T ss_pred ccHHHHhhhhcCC
Confidence 9999998876443
No 31
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=2e-10 Score=67.40 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=58.3
Q ss_pred HHHHHHHHHh-hcCCCCC-ceeHHHHHHHHHhc-----CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 27 MQELSNGFRL-LMDEDKG-LITFESLKKNSALL-----GLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 27 ~~~~~~~F~~-~D~~~~g-~i~~~el~~~l~~~-----~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
...+..+|+. +|++++| .|+..||+.++..- + ...++.++.++++.+|.+++|.|+|+||+.++...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~-~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK-NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc-CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3578999999 6788876 99999999999885 3 45678999999999999999999999999988765
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.20 E-value=1.3e-10 Score=62.32 Aligned_cols=61 Identities=41% Similarity=0.626 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLM 91 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l 91 (115)
+..+|..+|.+++|.|+..++..+++.++ .+.+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57889999999999999999999999999 88999999999999999999999999998765
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=99.14 E-value=3.7e-10 Score=62.15 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=57.2
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHh
Q 033591 32 NGFRLLMDEDKGLITFESLKKNSALLGLQ-DMSDEELMCMLREGDLDGD-GALNEMEFCTLMFR 93 (115)
Q Consensus 32 ~~F~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~e~~~~~~~~d~~~~-g~I~~~eF~~~l~~ 93 (115)
.+|..||+++.|.|....++..|+.++ . .+++++++.+.+.+|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~-~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVT-GRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHc-CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 379999999999999999999999998 6 8899999999999999998 99999999999874
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.13 E-value=4.2e-10 Score=69.03 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLM 91 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l 91 (115)
...+.++|..+|.+++|+|+..||..+. ++ ..+..+..++..+|.+++|.||++||+.++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3578999999999999999999999876 44 457788899999999999999999999998
No 35
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.12 E-value=5.9e-10 Score=73.45 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchhH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTN 104 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~ 104 (115)
..+..+|+.+|.+.+|+|+..||+.+|..+| .+.+.--+..+++.+|.|.+|+|+|-+|+-+++....+.+.++..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~ 174 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSG 174 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchH
Confidence 5688999999999999999999999999999 888888999999999999999999999999998887776665433
No 36
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=1.2e-09 Score=63.99 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCC--CCCceeHHHHHHHHH-hcCCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLMDE--DKGLITFESLKKNSA-LLGLQDMS----DEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D~~--~~g~i~~~el~~~l~-~~~~~~~~----~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+...|+.|+.. .+|.|+..||+.+++ .++ ..++ ++++..++..+|.+++|.|+|++|+.++....
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5688899999865 489999999999997 566 6666 89999999999999999999999999988654
No 37
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.00 E-value=5.4e-09 Score=66.27 Aligned_cols=79 Identities=32% Similarity=0.434 Sum_probs=66.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchhHHHH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFL 107 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~ 107 (115)
.+++++|.++|.|++|.|.+++|+.++.++| ...++++++.+++.. .|.|+|.-|++++-...++- +++.-+.
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlG-k~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gt--dpe~~I~ 104 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLG-KIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGT--DPEEVIL 104 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCC--CHHHHHH
Confidence 6899999999999999999999999999999 999999999999775 57899999999997776652 2345555
Q ss_pred HHhcCC
Q 033591 108 EALNVD 113 (115)
Q Consensus 108 ~~~~~~ 113 (115)
.|+...
T Consensus 105 ~AF~~F 110 (171)
T KOG0031|consen 105 NAFKTF 110 (171)
T ss_pred HHHHhc
Confidence 555443
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=98.96 E-value=6.4e-09 Score=79.46 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-CCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQ-DMSDEE---LMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNST 103 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~e---~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~ 103 (115)
++++++|..+|++++|.+ +..+++.+| . .+++++ +..+++.+|.+++|.|+++||+.++........++.-
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG-~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCS-IEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 455556666666666654 555555555 3 344444 4555555666666666666666655544333333334
Q ss_pred HHHHHHhcC
Q 033591 104 NLFLEALNV 112 (115)
Q Consensus 104 ~~~~~~~~~ 112 (115)
.+++.++|.
T Consensus 218 ~eaFk~fDk 226 (644)
T PLN02964 218 EELFKAADL 226 (644)
T ss_pred HHHHHHhCC
Confidence 444444443
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.85 E-value=4.7e-08 Score=74.79 Aligned_cols=64 Identities=16% Similarity=0.298 Sum_probs=60.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
+..+|+.+|.+++|.|+.+||..++..++ ...+++++..+|+.+|.+++|.|+++||..++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 79999999999999999999999999999 88899999999999999999999999999999873
No 40
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.80 E-value=8.4e-08 Score=56.22 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHh-----cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSAL-----LGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~-----~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+..+|..|. .+.+.++..||+.+++. +. ...++..++++++.+|.|+||.|+|.||+.++....
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 56888999997 55679999999999976 34 456789999999999999999999999999987653
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.79 E-value=5e-08 Score=51.72 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=44.4
Q ss_pred CCCCccHHHHHHHHHHhhCCc-ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 033591 4 ANSGVVFEDFFPAMVEKLGAE-GFMQELSNGFRLLMDEDKGLITFESLKKNSAL 56 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~-~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 56 (115)
++|.|+.++|..++ ..+... .+.+++..+|..+|.+++|+|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47899999999999 444434 66678999999999999999999999998864
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.75 E-value=2.4e-08 Score=46.51 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
+++.+|+.||+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36778888888888888888888888754
No 43
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.70 E-value=5.5e-07 Score=59.55 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=73.5
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCc-eeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGL-ITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~-i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
..|.++.++|+.+.....+ .-...+++.|+.+++|. |+++++.+++..+.+....++.+.-.++.+|.+++|.|
T Consensus 47 ~~g~lt~eef~~i~~~~~N-----p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I 121 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALN-----PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFI 121 (187)
T ss_pred ccCccCHHHHHHHHHHhcC-----cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcC
Confidence 5688999999999855433 24678999999999998 99999999999987233444488888999999999999
Q ss_pred cHHHHHHHHHhhCcc
Q 033591 83 NEMEFCTLMFRLSPG 97 (115)
Q Consensus 83 ~~~eF~~~l~~~~~~ 97 (115)
+.+++..++......
T Consensus 122 ~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 122 SREELKQILRMMVGE 136 (187)
T ss_pred cHHHHHHHHHHHHcc
Confidence 999999999887553
No 44
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.62 E-value=4.6e-07 Score=54.58 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 25 GFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
.....+..+|...++ ++|.|+..+.+.++...+ ++.+.+.++|...|.+++|+++++||+.+|+-.
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 455788999999985 689999999999999877 899999999999999999999999999877643
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.60 E-value=1.1e-07 Score=44.85 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHH-hcC
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSA-LLG 58 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~-~~~ 58 (115)
+++.+|+.+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.58 E-value=4.9e-07 Score=66.14 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=71.7
Q ss_pred CCCCCccHHHHHHHHHHhhCC-----------cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCC---CCCCHHHHH
Q 033591 3 SANSGVVFEDFFPAMVEKLGA-----------EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGL---QDMSDEELM 68 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~-----------~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~---~~~~~~e~~ 68 (115)
+.+|++.|.+.+..+...... ......++.+|+.+|.|+.|.||.+||+.+++-++. ..++.+++.
T Consensus 511 s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~ 590 (631)
T KOG0377|consen 511 SDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEIL 590 (631)
T ss_pred CcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHH
Confidence 346778887777755422110 112346888999999999999999999998887631 467899999
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 69 CMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 69 ~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
++...+|.|++|.|++.||+.+++-.
T Consensus 591 ~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 591 ELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHhhccCCCCcccHHHHHHHHhhh
Confidence 99999999999999999999987643
No 47
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.49 E-value=5.5e-07 Score=49.48 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=42.6
Q ss_pred CCCCCccHHHHHHHHHHhhCC---cChHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 033591 3 SANSGVVFEDFFPAMVEKLGA---EGFMQELSNGFRLLMDEDKGLITFESLKKNS 54 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 54 (115)
+++|.|+.+||..++...... ....+.+..+|+.+|++++|.|+.+||..++
T Consensus 12 d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 12 DGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 568999999999998776542 2234577788999999999999999998765
No 48
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=5.1e-07 Score=63.42 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCCCCccHHHHHHHHHHhhC-CcChH---HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 033591 3 SANSGVVFEDFFPAMVEKLG-AEGFM---QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDG 78 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~-~~~~~---~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~ 78 (115)
+++|+|+++||+.=+-..-. ...+. .+-...+...|+|++|+++..|++.++---+ ......++..++...|.++
T Consensus 212 n~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~-~d~A~~EA~hL~~eaD~dk 290 (325)
T KOG4223|consen 212 NGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSE-QDHAKAEARHLLHEADEDK 290 (325)
T ss_pred CCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCC-ccHHHHHHHHHhhhhccCc
Confidence 67999999999997655433 22222 2344667778999999999999998886655 5667889999999999999
Q ss_pred CCcccHHHHHHHH
Q 033591 79 DGALNEMEFCTLM 91 (115)
Q Consensus 79 ~g~I~~~eF~~~l 91 (115)
+|++|++|.+.-.
T Consensus 291 D~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 291 DGKLSKEEILEHY 303 (325)
T ss_pred cccccHHHHhhCc
Confidence 9999999987643
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.46 E-value=3e-07 Score=42.80 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 66 ELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 66 e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
|+.++|+.+|.|++|+|+++||+.++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999875
No 50
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.45 E-value=4.4e-06 Score=55.93 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=61.5
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
+.|.|+-+|...+++---..+-..+..+.+..+||.+.+|.|...||+.+.+.+. .-.++++.+|.|+.|+|+
T Consensus 70 ~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-------~Wr~vF~~~D~D~SG~I~ 142 (221)
T KOG0037|consen 70 RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYIN-------QWRNVFRTYDRDRSGTID 142 (221)
T ss_pred ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-------HHHHHHHhcccCCCCccc
Confidence 3455666666665542222233345566666677777777777777777665554 234567777777777777
Q ss_pred HHHHHHHHHhhCcccccchhHHHHHHhc
Q 033591 84 EMEFCTLMFRLSPGLMKNSTNLFLEALN 111 (115)
Q Consensus 84 ~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 111 (115)
..|+.+.+....-.+..+-.+.+.+=+|
T Consensus 143 ~sEL~~Al~~~Gy~Lspq~~~~lv~kyd 170 (221)
T KOG0037|consen 143 SSELRQALTQLGYRLSPQFYNLLVRKYD 170 (221)
T ss_pred HHHHHHHHHHcCcCCCHHHHHHHHHHhc
Confidence 7777777776666555555555555444
No 51
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.36 E-value=3.1e-07 Score=66.85 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=65.9
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc------CCC--------CCC-HHHHH
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL------GLQ--------DMS-DEELM 68 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~------~~~--------~~~-~~e~~ 68 (115)
..|-|||.||+-++...... ...++-+|++||.|++|.|+.+||..+++.. | . ..+ ..+++
T Consensus 212 ~~GLIsfSdYiFLlTlLS~p---~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g-~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLSIP---ERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVG-VRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred CCCeeeHHHHHHHHHHHccC---cccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccc-eecccCccccceehhhhh
Confidence 46889999999988776543 3458999999999999999999998887542 2 1 011 12233
Q ss_pred HHH--HhcCCCCCCcccHHHHHHHHHhhCccc
Q 033591 69 CML--REGDLDGDGALNEMEFCTLMFRLSPGL 98 (115)
Q Consensus 69 ~~~--~~~d~~~~g~I~~~eF~~~l~~~~~~~ 98 (115)
.-+ .-+..++++++++++|...+.+....+
T Consensus 288 saL~~yFFG~rg~~kLs~deF~~F~e~Lq~Ei 319 (489)
T KOG2643|consen 288 SALLTYFFGKRGNGKLSIDEFLKFQENLQEEI 319 (489)
T ss_pred hhHHHHhhccCCCccccHHHHHHHHHHHHHHH
Confidence 222 236788889999999999888765443
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.2e-05 Score=58.37 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALLGLQD-MSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~-~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
+++.+|+.||.+++|.++..++...+..+. .+ ...+-+..++..+|.+.+|.|+|.+|.+.+..
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~-~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLD-HPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcC-CCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 455556666655666666666555555554 33 33334444555555555555666555555543
No 53
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.21 E-value=1e-05 Score=59.06 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=49.9
Q ss_pred CcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 23 AEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 23 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
.......+..+|+.+|.+++|.|+.+|+. + +..+|+.+|.+++|.|+++||...+...
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~------~--------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWL------G--------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHH------H--------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34456788999999999999999999983 1 4678999999999999999999988764
No 54
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.17 E-value=1.2e-05 Score=42.07 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=40.4
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
+++..|++.+|+.++ ..+++..+..+|+.+|..++|++..+||..+++.
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 468899999999999 9999999999999999999999999999988765
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=4.8e-06 Score=37.32 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHH
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNS 54 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l 54 (115)
++.+|+.+|.|++|.|+..|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4568888888888888888887753
No 56
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.14 E-value=9.5e-06 Score=47.54 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=46.2
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChH-HHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFM-QELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~-~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
.++|+|+..|+..++...+...-+. +.+..+++.+|.+++|.|++.||..++..+.
T Consensus 21 ~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 21 GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3678999999999998744432223 6899999999999999999999999887764
No 57
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.05 E-value=2.9e-05 Score=45.34 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=45.9
Q ss_pred CCCccHHHHHHHHHHh--hCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 5 NSGVVFEDFFPAMVEK--LGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~--~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+|.|+.+||..++... +....+.+++..+++.+|.+++|.|+..+|..++..+.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 6799999999999743 34445778999999999999999999999998887654
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.02 E-value=3.4e-05 Score=63.58 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCC-------CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDM-------SDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~-------~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..++.-+|+.||++.+|.++..+|+..|+++| ..+ ++.++..++..+|++.+|+|+..+|+.+|-+..
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcC-CCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 35778899999999999999999999999998 765 344899999999999999999999999887654
No 59
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.00 E-value=3.8e-05 Score=45.26 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=44.8
Q ss_pred CCC-CccHHHHHHHHHHhh----CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 4 ANS-GVVFEDFFPAMVEKL----GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 4 ~~~-~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
++| +|+..|+..++.... ........+..+++.+|.+++|.|+..||..++..+.
T Consensus 24 gdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 24 GDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 566 599999999986642 2233557899999999999999999999999987764
No 60
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.97 E-value=4.7e-05 Score=44.46 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=46.3
Q ss_pred CCCC-CccHHHHHHHHHH----hhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANS-GVVFEDFFPAMVE----KLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~-~i~~~eFl~~~~~----~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+++| .|+.+++..++.. .+....+..++..+++..|++++|.|+..+|..++..+.
T Consensus 21 dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 21 EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4678 5999999999987 344445667899999999999999999999988886543
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.95 E-value=3.5e-05 Score=44.94 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=44.8
Q ss_pred CCCCccHHHHHHHHHHhhCCcCh----HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGF----MQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~----~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
.+|.|+.+|+..++........+ ...+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 36789999999999754432222 67899999999999999999999999887653
No 62
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.89 E-value=6.4e-05 Score=43.58 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=45.3
Q ss_pred CCCCCccHHHHHHHHHHhhCC----cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANSGVVFEDFFPAMVEKLGA----EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~----~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+++|.|+.+++..++...+.. .....++..+++.+|.+++|.|+.++|..++..+.
T Consensus 22 ~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 22 GDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred CCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 367999999999998653321 12467899999999999999999999999887654
No 63
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.89 E-value=8.9e-05 Score=38.95 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=42.3
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNS 54 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 54 (115)
+++|.|++.+|..++.... ...+.+.+..+|..+|.+++|.|+..++...+
T Consensus 12 ~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 12 DGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4578999999999987643 34566788999999999999999999998765
No 64
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.89 E-value=6.4e-06 Score=50.34 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~ 89 (115)
-...+.+.|..+|.+++|.++..|++.+...+. ..+.=+..++...|.++++.|+..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 346788899999999999999999988765443 3444577899999999999999999975
No 65
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.88 E-value=6.2e-05 Score=44.33 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=45.1
Q ss_pred CCCccHHHHHHHHHHhh----CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 5 NSGVVFEDFFPAMVEKL----GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+|.|+.+++..++.... ....+.+.+..+++.+|.+++|.|+.++|..++..++
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 58999999999886532 2234567899999999999999999999999988765
No 66
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.87 E-value=8.1e-05 Score=54.86 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh-------cCCCCCC-HHHHHHHHHhcC
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSAL-------LGLQDMS-DEELMCMLREGD 75 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-------~~~~~~~-~~e~~~~~~~~d 75 (115)
.+|+++|.+|+.++..... ..+..-++-+|+++|.+++|.++..|++-..+. .|...++ +.-+.+++..+.
T Consensus 328 ~eGrmdykdFv~FilA~e~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvk 406 (493)
T KOG2562|consen 328 VEGRMDYKDFVDFILAEED-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVK 406 (493)
T ss_pred ecCcccHHHHHHHHHHhcc-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhC
Confidence 4788999999998755433 334467999999999999999999998765543 3423343 455677888888
Q ss_pred CCCCCcccHHHHHH
Q 033591 76 LDGDGALNEMEFCT 89 (115)
Q Consensus 76 ~~~~g~I~~~eF~~ 89 (115)
+...++|+.++|..
T Consensus 407 P~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 407 PEDENKITLQDLKG 420 (493)
T ss_pred ccCCCceeHHHHhh
Confidence 78889999999865
No 67
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.85 E-value=9.6e-05 Score=43.27 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=43.9
Q ss_pred CCccHHHHHHHHHHhh----CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 6 SGVVFEDFFPAMVEKL----GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 6 ~~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
++|+.+||..++.... ........+..+++.+|.+++|.|+.+||..++..+.
T Consensus 26 ~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred CeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3899999999998764 2233457899999999999999999999999887654
No 68
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.84 E-value=0.00012 Score=39.79 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=43.5
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
+++|.|+.+++..++... . .+.+.+..+|+.+|.+++|.|+.+++..++..+
T Consensus 11 ~~~G~i~~~el~~~l~~~-g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 11 DGDGLISGDEARPFLGKS-G--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CCCCcCcHHHHHHHHHHc-C--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 467999999999988653 2 356789999999999999999999998887654
No 69
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.83 E-value=4.2e-05 Score=54.28 Aligned_cols=89 Identities=7% Similarity=0.026 Sum_probs=73.4
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+++|.++|.+....++...+.+....-++-+|++|+.+.+|+++..+|..+|+... .+..-.+--++...+...+++|
T Consensus 271 ~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~~lf~~i~q~d~~ki 348 (412)
T KOG4666|consen 271 GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVPVLFPSIEQKDDPKI 348 (412)
T ss_pred CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--CcceeeccccchhhhcccCcce
Confidence 45789999999999988877777778899999999999999999999988887642 2444445567888888889999
Q ss_pred cHHHHHHHHHh
Q 033591 83 NEMEFCTLMFR 93 (115)
Q Consensus 83 ~~~eF~~~l~~ 93 (115)
++.+|..++..
T Consensus 349 ~~~~f~~fa~~ 359 (412)
T KOG4666|consen 349 YASNFRKFAAT 359 (412)
T ss_pred eHHHHHHHHHh
Confidence 99999987654
No 70
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.80 E-value=0.00014 Score=42.94 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=44.2
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
+++|.|++.++..++... ..+.+++..+|+.+|.+++|.|+.++|..++..+
T Consensus 22 d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 22 NQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 468899999999998763 2455789999999999999999999999888764
No 71
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.80 E-value=0.00014 Score=54.42 Aligned_cols=67 Identities=27% Similarity=0.352 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC---CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQ---DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSP 96 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 96 (115)
..+...|...| +++|+|+..++..++...+ . ...+++++.++...+.+.+|+|+|++|+.++....+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~-~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAK-LPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhc-ccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 56888999999 9999999999999999976 3 345899999999999999999999999997766543
No 72
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.75 E-value=0.00016 Score=53.94 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=44.8
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
.++|-|||+||..+-+.. +.+....+.+|..||+.++|.+|.++++.++++..
T Consensus 86 tKDglisf~eF~afe~~l---C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 86 TKDGLISFQEFRAFESVL---CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred cccccccHHHHHHHHhhc---cCchHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 468899999999876554 44567789999999999999999999999998754
No 73
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.75 E-value=0.00014 Score=42.63 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=45.4
Q ss_pred CCCC-CccHHHHHHHHHHhh----CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANS-GVVFEDFFPAMVEKL----GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~-~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+++| .|+..++..++...+ +...+.+.+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 22 dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 22 EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 4678 599999999986532 2234567899999999999999999999999887654
No 74
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=7.7e-05 Score=52.70 Aligned_cols=71 Identities=18% Similarity=0.118 Sum_probs=61.4
Q ss_pred CcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 23 AEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 23 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
...+.+.+..++..+|.+++|.|+..|++.++.... ...-..++.+-|..++.+.+|.|+|+++...+...
T Consensus 72 ~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~-k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~ 142 (325)
T KOG4223|consen 72 PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQ-KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGR 142 (325)
T ss_pred cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhc
Confidence 345678999999999999999999999999998876 65666777888889999999999999999887753
No 75
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.63 E-value=8.6e-05 Score=33.16 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 033591 67 LMCMLREGDLDGDGALNEMEFCTLM 91 (115)
Q Consensus 67 ~~~~~~~~d~~~~g~I~~~eF~~~l 91 (115)
++.+|..+|.|++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999998764
No 76
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.58 E-value=0.00031 Score=43.09 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=40.1
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNS 54 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 54 (115)
+++|.|+.+|...+. .......+...|..+|.+++|.||.+|+...+
T Consensus 60 d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 60 NYDGKLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred CCCCcCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 578999999999876 13345678889999999999999999999888
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.53 E-value=0.00017 Score=33.65 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033591 66 ELMCMLREGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 66 e~~~~~~~~d~~~~g~I~~~eF~~~l~ 92 (115)
++..+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 78
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.47 E-value=0.00099 Score=39.12 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=45.3
Q ss_pred CCCCccHHHHHHHHHHhh----CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 4 ANSGVVFEDFFPAMVEKL----GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
..++++..||..++...+ +.......+..+++.+|.+++|.|++.|+..++..+.
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456899999999986554 3344557899999999999999999999998887654
No 79
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.46 E-value=0.00024 Score=31.35 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHh
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSAL 56 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 56 (115)
++.+|+.+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777766653
No 80
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00027 Score=51.90 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=50.5
Q ss_pred CccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 033591 7 GVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL-GLQDMSDEELMCMLREGDLDGDGALNEM 85 (115)
Q Consensus 7 ~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~e~~~~~~~~d~~~~g~I~~~ 85 (115)
.||++||.+++.-..+ .+.+..+...| ....+.|+..+++++...+ | ..+++.-++-+|..+|.|+||.++++
T Consensus 372 gISl~Ef~~Ff~Fl~~----l~dfd~Al~fy-~~Ag~~i~~~~f~raa~~vtG-veLSdhVvdvvF~IFD~N~Dg~LS~~ 445 (489)
T KOG2643|consen 372 GISLQEFKAFFRFLNN----LNDFDIALRFY-HMAGASIDEKTFQRAAKVVTG-VELSDHVVDVVFTIFDENNDGTLSHK 445 (489)
T ss_pred CcCHHHHHHHHHHHhh----hhHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcC-cccccceeeeEEEEEccCCCCcccHH
Confidence 4666666655432211 12233332222 1234556666666665553 5 56666656666778899999999999
Q ss_pred HHHHHHHhh
Q 033591 86 EFCTLMFRL 94 (115)
Q Consensus 86 eF~~~l~~~ 94 (115)
||+.+|++.
T Consensus 446 EFl~Vmk~R 454 (489)
T KOG2643|consen 446 EFLAVMKRR 454 (489)
T ss_pred HHHHHHHHH
Confidence 999999765
No 81
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0012 Score=40.36 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhc------CC--CC-CCHHHHHHHHH----hcCCCCCCcccHHHHHHH
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALL------GL--QD-MSDEELMCMLR----EGDLDGDGALNEMEFCTL 90 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~------~~--~~-~~~~e~~~~~~----~~d~~~~g~I~~~eF~~~ 90 (115)
-..|+++|-+++|.++--|+..+++-. |. .+ .++.|+..++. .-|.|++|.|+|.||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 458999999999999999999988864 21 12 35777776654 568889999999999864
No 82
>PF14658 EF-hand_9: EF-hand domain
Probab=97.28 E-value=0.003 Score=34.87 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=46.0
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCC-CceeHHHHHHHHHh
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDK-GLITFESLKKNSAL 56 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~i~~~el~~~l~~ 56 (115)
.+.|.|.-..+..++...-...+++.++..+.+.+|+++. |.|+.+.|..+|+.
T Consensus 10 ~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 10 QKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4578899999999887665546677899999999999998 99999999999874
No 83
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.20 E-value=0.00058 Score=47.03 Aligned_cols=69 Identities=17% Similarity=0.095 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCC--CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQD--MSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~--~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
..+.+..+|+..|.+.+|.||..|+++.+..---.- -.-++-...|..+|++++|.|+|+||..-+...
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 346899999999999999999999998775411000 011233345778899999999999997655443
No 84
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.15 E-value=0.0022 Score=36.72 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhhCcccc
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALLGLQ-DMSDEELMCMLREGDLD----GDGALNEMEFCTLMFRLSPGLM 99 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~e~~~~~~~~d~~----~~g~I~~~eF~~~l~~~~~~~~ 99 (115)
++..+|..+-. +.+.+|.++|..-|+.-.-. ..+.+++..++..+..+ ..+.+++++|...|.+..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~~~ 75 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENSIF 75 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCBSS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCCCC
Confidence 46789999954 89999999999999876402 46899999999887544 4689999999999987765543
No 85
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.05 E-value=0.00094 Score=29.29 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 67 LMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 67 ~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
+..+++.++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999998764
No 86
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0039 Score=49.08 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
..-+...+|..+|+...|++|-..-+.+|...+ ++...+..++..-|.|+||+++.+||+-.|.-.
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 345788899999999999999998888887766 888999999999999999999999998877543
No 87
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.68 E-value=0.004 Score=45.78 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
+++|.|+.+||+. ...+|+.+|.+++|.|+.+||..+++..
T Consensus 346 dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 346 DGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred CCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5688999999952 4678999999999999999999988753
No 88
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.55 E-value=0.021 Score=29.86 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 8 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 8 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
++|.|-..++.. ++=.-...-+..+|+..|+.++|.+..+|+.+.++.+
T Consensus 2 msf~Evk~lLk~-~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKM-MNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHH-TT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 677777776643 2222344678889999999999999999999888764
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.44 E-value=0.025 Score=34.01 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=40.4
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
..+|.|+-+.-..++... .-+...+..++.+.|.+++|+++.+||.-+|.-+
T Consensus 21 ~~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 21 PQDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp SSTTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 456888888887766432 3455789999999999999999999998887643
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.32 E-value=0.013 Score=43.66 Aligned_cols=107 Identities=15% Similarity=0.239 Sum_probs=67.2
Q ss_pred CCCCCccHHHHHHH-----HHHhhCCc--------ChHHHHHHH---HHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHH
Q 033591 3 SANSGVVFEDFFPA-----MVEKLGAE--------GFMQELSNG---FRLLMDEDKGLITFESLKKNSALLGLQDMSDEE 66 (115)
Q Consensus 3 ~~~~~i~~~eFl~~-----~~~~~~~~--------~~~~~~~~~---F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e 66 (115)
.+.|.|+..+.+.. +....... -+-+.+..+ |--+|++++|.|++++|+.-.. ..++.-=
T Consensus 237 s~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d----~tlt~~i 312 (493)
T KOG2562|consen 237 SRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD----HTLTERI 312 (493)
T ss_pred ccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc----cchhhHH
Confidence 45777887776652 22111111 111344444 6667999999999999876543 3345667
Q ss_pred HHHHHHh----cCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHHhcCC
Q 033591 67 LMCMLRE----GDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEALNVD 113 (115)
Q Consensus 67 ~~~~~~~----~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 113 (115)
++++|.+ .-...+|+++|++|+.++..........+..-.++.+|++
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld 363 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLD 363 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeecc
Confidence 7888883 3444689999999999887665443344444445555554
No 91
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.14 E-value=0.003 Score=35.19 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC-------CCcccHHHHHHH
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDG-------DGALNEMEFCTL 90 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~-------~g~I~~~eF~~~ 90 (115)
+.+++..+|+.+ .+++++||..+|++.|. +++++-++..+..-. .|.++|..|++.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~--------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT--------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS---------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC--------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 447899999999 78999999999998762 223355665543322 266888888753
No 92
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.12 E-value=0.011 Score=45.17 Aligned_cols=75 Identities=20% Similarity=0.205 Sum_probs=67.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNST 103 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~ 103 (115)
...+.-|..+|.++.|+++..++.++|+..+ .+.+++.+.+++...+.+.+|.+...+|.+++.....+..+.+.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~~R 667 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEGSR 667 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHHHH
Confidence 3456679999999999999999999999999 89999999999999999999999999999999988888776554
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.00 E-value=0.0076 Score=43.15 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=64.4
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchhHHH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALL-GLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLF 106 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~ 106 (115)
..++..|.+||.+++|.++..+....+.-+ | .+.+++-++-.++.++...||.+.-.+|..+++- ..+.++-.-.-+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~-p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~-~lgv~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCG-PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV-VLGVEVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeC-CCCcHHHHHHHHHhcccccccccchHHHHHHHHH-hcCcceeecccc
Confidence 578899999999999999988877666655 5 5677888888899999999999998888877774 445555445555
Q ss_pred HHHhcCC
Q 033591 107 LEALNVD 113 (115)
Q Consensus 107 ~~~~~~~ 113 (115)
+.++++.
T Consensus 337 f~~i~q~ 343 (412)
T KOG4666|consen 337 FPSIEQK 343 (412)
T ss_pred chhhhcc
Confidence 5555543
No 94
>PLN02952 phosphoinositide phospholipase C
Probab=95.97 E-value=0.13 Score=39.98 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=63.5
Q ss_pred CCCCCccHHHHHHHHHHhh-CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--CCCHHHHHHHHHhcC----
Q 033591 3 SANSGVVFEDFFPAMVEKL-GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ--DMSDEELMCMLREGD---- 75 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~--~~~~~e~~~~~~~~d---- 75 (115)
+..|.++|.+|..+....- +...+..++..+|..+-. +.+.++.++|...|+... . ..+.+++..++..+-
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q-~e~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQ-DELDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhC-CCcCCCHHHHHHHHHHHHhhcc
Confidence 3467899999988765442 233456799999999954 447899999999998874 3 356777777765431
Q ss_pred ---CCCCCcccHHHHHHHHHh
Q 033591 76 ---LDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 76 ---~~~~g~I~~~eF~~~l~~ 93 (115)
......++++.|...|..
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccccCcCHHHHHHHHcC
Confidence 112345899999999874
No 95
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.81 E-value=0.02 Score=48.18 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=51.4
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 33 GFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 33 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
.|+-+|+++.|.|+..+|..+|..-. ..++.+++-++.....+.+...+|.+|+.-+...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k--~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK--HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc--cchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 47888999999999999999998643 5788999999988888899999999998766544
No 96
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.78 E-value=0.1 Score=33.58 Aligned_cols=63 Identities=10% Similarity=0.175 Sum_probs=47.1
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhcCC--CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 33 GFRLLMDEDKGLITFESLKKNSALLGL--QDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 33 ~F~~~D~~~~g~i~~~el~~~l~~~~~--~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
.|..|-..+...++...|..+|+..+. ..++...++.+|..+-..+..+|+|++|+.+|....
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 333334566678999999999999752 468999999999997766677899999999987653
No 97
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.76 E-value=0.031 Score=35.75 Aligned_cols=67 Identities=12% Similarity=0.231 Sum_probs=50.6
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhcCCCCCC-HHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCccccc
Q 033591 33 GFRLLMDEDKGLITFESLKKNSALLGLQDMS-DEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMK 100 (115)
Q Consensus 33 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~-~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~ 100 (115)
+-..|-.+|.|.+|.+++..+++-+. ..-+ +-.+.-.|+.+|-++++.|.-++....+.+...+.+.
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~s-E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFS-EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHH-hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 44445579999999999999888776 3222 3344556788999999999999999999887655443
No 98
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=95.76 E-value=0.042 Score=41.07 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCCCccHHHHHHHHHHhh---CCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANSGVVFEDFFPAMVEKL---GAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~---~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+.+|.||.+||..++.... +..-...++..+-+.+|-+++|.|+.+||-++++-+.
T Consensus 559 D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 559 DNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred CCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 5689999999999765443 3444567888899999999999999999999987654
No 99
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.60 E-value=0.0082 Score=42.98 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHH---HHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 27 MQELSNGFRLLMDEDKGLITFESL---KKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el---~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
+..+.+.|..+|+++++.|...|. +.++..-. ....=..++++..|.|+|..|++.|+...+.-..
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s---~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS---KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhc---cHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 346778899999999999999985 45554433 2344456789999999999999999999886543
No 100
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=0.04 Score=41.67 Aligned_cols=64 Identities=28% Similarity=0.352 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
.+-....|+..-+|-.|.|+-.--+..+++.. ++-+|+..+|+..|.+.||.+++.|||..+.-
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 34566789999999999999877777777654 77899999999999999999999999988753
No 101
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.32 E-value=0.14 Score=43.67 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=55.8
Q ss_pred CCCCCccHHHHHHHHHHhhC-CcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh----cCCC
Q 033591 3 SANSGVVFEDFFPAMVEKLG-AEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE----GDLD 77 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~-~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~----~d~~ 77 (115)
+++|.|+..+|+.+|...-. +-....+++.+|+.+|. +..||+..++.. ++|++++.-++.. +++.
T Consensus 2308 ~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~--------~ltreqaefc~s~m~~~~e~~ 2378 (2399)
T KOG0040|consen 2308 NRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQ--------NLTREQAEFCMSKMKPYAETS 2378 (2399)
T ss_pred CCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHh--------cCCHHHHHHHHHHhhhhcccc
Confidence 46789999999998875532 22334689999999988 888999888764 3566666655443 3332
Q ss_pred ----CCCcccHHHHHHHHH
Q 033591 78 ----GDGALNEMEFCTLMF 92 (115)
Q Consensus 78 ----~~g~I~~~eF~~~l~ 92 (115)
..+.++|.+|++.+.
T Consensus 2379 ~~~s~q~~l~y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2379 SGRSDQVALDYKDFVNSLF 2397 (2399)
T ss_pred cCCCccccccHHHHHHHHh
Confidence 224588888887653
No 102
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.97 E-value=0.06 Score=41.75 Aligned_cols=76 Identities=26% Similarity=0.305 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 033591 8 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEM 85 (115)
Q Consensus 8 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~ 85 (115)
|+|..|..++.....-..+..-+.++|+.+|..++|.++..++...+..+- ..---+.+.-+++.++.+++ ..+.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccc
Confidence 566666666655444334445678899999999999999999998888775 33334555666777777765 44433
No 103
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.88 E-value=0.32 Score=37.04 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=55.5
Q ss_pred CccHHHHHHHHHHhhCCcChHHHHHHHHHh-hcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHH
Q 033591 7 GVVFEDFFPAMVEKLGAEGFMQELSNGFRL-LMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEM 85 (115)
Q Consensus 7 ~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~-~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~ 85 (115)
.++-++|+..........+...+...+... -|..++|.|+.+||...=.-+. .++......|..+|..++|.|+++
T Consensus 52 ~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~ 128 (694)
T KOG0751|consen 52 YMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFE 128 (694)
T ss_pred ccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehH
Confidence 367777777655555544444444444433 3566788888888776444344 234455566777888888888888
Q ss_pred HHHHHHHhhC
Q 033591 86 EFCTLMFRLS 95 (115)
Q Consensus 86 eF~~~l~~~~ 95 (115)
++..++....
T Consensus 129 ~~~~if~~t~ 138 (694)
T KOG0751|consen 129 DVADIFGQTN 138 (694)
T ss_pred HHHHHHhccc
Confidence 8888877654
No 104
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.60 E-value=0.1 Score=36.26 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh-----cCCCCCCHHHHHH----HHHhcCCCC
Q 033591 8 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSAL-----LGLQDMSDEELMC----MLREGDLDG 78 (115)
Q Consensus 8 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-----~~~~~~~~~e~~~----~~~~~d~~~ 78 (115)
++-.||+.++.-.-........+..+.+.+|.+++..++..+|....-. -| +.+..-.+.. .=..+|.|.
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqg-qdiddnwvkdRkkEFeElIDsNh 294 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQG-QDIDDNWVKDRKKEFEELIDSNH 294 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhc-cchHHHHHHHHHHHHHHHhhcCC
Confidence 5557787776433332334456788899999999999999998764321 12 3333333222 223468899
Q ss_pred CCcccHHHHHHHHHh
Q 033591 79 DGALNEMEFCTLMFR 93 (115)
Q Consensus 79 ~g~I~~~eF~~~l~~ 93 (115)
+|.+++.|...++..
T Consensus 295 DGivTaeELe~y~dP 309 (362)
T KOG4251|consen 295 DGIVTAEELEDYVDP 309 (362)
T ss_pred ccceeHHHHHhhcCc
Confidence 999999888776543
No 105
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.60 E-value=0.12 Score=37.53 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+.+.|..+|.+.+|.++..||..+- ....+.=+.-+|...|...+|.|+-.|++..+.+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhh-----ccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 578999999999999999999988765 223455677789999999999999999999987654
No 106
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.09 E-value=0.13 Score=36.79 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=47.4
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHh-----cCCCCCCHHHH-----------HHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 033591 33 GFRLLMDEDKGLITFESLKKNSAL-----LGLQDMSDEEL-----------MCMLREGDLDGDGALNEMEFCTLMFRLSP 96 (115)
Q Consensus 33 ~F~~~D~~~~g~i~~~el~~~l~~-----~~~~~~~~~e~-----------~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 96 (115)
.|.++|.+++|.++-.||..+++. .. ....++.+ +.+++.+|.|.+.-|+.++|++--.+...
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYd-pkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYD-PKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 477788999999999998887765 23 11122221 23578899999999999999998776654
Q ss_pred ccc
Q 033591 97 GLM 99 (115)
Q Consensus 97 ~~~ 99 (115)
+.+
T Consensus 328 ~~p 330 (442)
T KOG3866|consen 328 NPP 330 (442)
T ss_pred CCc
Confidence 443
No 107
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.54 E-value=1.5 Score=35.84 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=65.6
Q ss_pred ccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc----------CCCCCCHHHHHHHHHhcCCC
Q 033591 8 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL----------GLQDMSDEELMCMLREGDLD 77 (115)
Q Consensus 8 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----------~~~~~~~~e~~~~~~~~d~~ 77 (115)
.++..|..++.... +..++..+|..+-.++.-++|.++|...+..- - ....+..+..+++.+..+
T Consensus 205 f~~e~f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilf-p~~~~~r~~~liekyEp~ 279 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILF-PPADPRRIQSLIEKYEPN 279 (1189)
T ss_pred ccHHHHHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhc-CCCCHHHHHHHHHHcCCc
Confidence 45666666665443 33579999999988888999999999998762 2 356788999999998777
Q ss_pred C----CCcccHHHHHHHHHhhCcc
Q 033591 78 G----DGALNEMEFCTLMFRLSPG 97 (115)
Q Consensus 78 ~----~g~I~~~eF~~~l~~~~~~ 97 (115)
+ .|.++-+.|+..+......
T Consensus 280 ~~~a~~gqms~dgf~ryl~gdEn~ 303 (1189)
T KOG1265|consen 280 SDNAEKGQMSTDGFVRYLMGDENA 303 (1189)
T ss_pred hhhhhccccchhhhHHHhhCCccc
Confidence 4 5889999999998875444
No 108
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=93.19 E-value=1.2 Score=30.08 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCC-HHHHHHHHHh--cCCCCC
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMS-DEELMCMLRE--GDLDGD 79 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~-~~e~~~~~~~--~d~~~~ 79 (115)
.++|.|++.|..-+|.+ +..+.+.-.++.+.+..|.|.+|+||..++--+++...-..+. +..+..+-.. +|....
T Consensus 111 ~rDgfIdl~ELK~mmEK-LgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVske 189 (244)
T KOG0041|consen 111 DRDGFIDLMELKRMMEK-LGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKE 189 (244)
T ss_pred cccccccHHHHHHHHHH-hCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchhhh
Confidence 56899999998777754 5556676788999999999999999999998888764202333 3333434332 555554
Q ss_pred CcccHHHH
Q 033591 80 GALNEMEF 87 (115)
Q Consensus 80 g~I~~~eF 87 (115)
|-.--..|
T Consensus 190 GV~GAknF 197 (244)
T KOG0041|consen 190 GVSGAKNF 197 (244)
T ss_pred hhhhHHHH
Confidence 44333344
No 109
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=0.13 Score=37.64 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH-hcCCCCCCcccHHHHHHHHH
Q 033591 25 GFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLR-EGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~-~~d~~~~g~I~~~eF~~~l~ 92 (115)
++.++++++|+.+|+.++|+|+..-++.++..++ ..+++.+.-.+.+ .+++.+-|.|-..+|..-+.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N-~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN-RLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhc-ccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 4458999999999999999999999999999998 7676655444443 46666666665555554443
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.63 E-value=0.61 Score=26.38 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCCCCccHHHHHHHHHHhhCC-cChHHHHHHHHHhhcCC----CCCceeHHHHHHHHHh
Q 033591 3 SANSGVVFEDFFPAMVEKLGA-EGFMQELSNGFRLLMDE----DKGLITFESLKKNSAL 56 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~-~~~~~~~~~~F~~~D~~----~~g~i~~~el~~~l~~ 56 (115)
+..+.|+.++|..++...-+. ....+.+..++..|.++ ..+.+|.++|...|.+
T Consensus 11 ~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 11 SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 346789999999999877665 23578899999998654 4799999999988765
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=91.61 E-value=0.94 Score=36.01 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
.-+..+|...|++.+|.++..+...+++.++ ..+.+..+..+++..+..+++++...+|+.......
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc
Confidence 4556678888889999999888888888888 777888888888888777788888888877766543
No 112
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=91.53 E-value=0.22 Score=30.50 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 61 DMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 61 ~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
-+++++++.++..+-.|..|+|.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 478999999999999999999999999987763
No 113
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.50 E-value=1.4 Score=28.94 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 63 SDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 63 ~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
.++..+++|..++..+.+.+++.|...+++...
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 356688899988887788899999999988643
No 114
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=91.14 E-value=1.4 Score=35.83 Aligned_cols=71 Identities=21% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHH-----HHHHHHHhcCCCCCCcccHHHHHHHHHhhCccc
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDE-----ELMCMLREGDLDGDGALNEMEFCTLMFRLSPGL 98 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~-----e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~ 98 (115)
..+++..|+.++....|..+.+++...+-.+| .+..++ +...++...+.+.-|.|++.+|...|.+.....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLG-YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 36899999999999999999999999999999 666542 233455566777779999999999998766543
No 115
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.81 E-value=0.14 Score=41.37 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 25 GFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
.....+..+|...|.+.+|.|+..+....+...| ++...+..+|...+..+.|.+++.+|+..+...
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 3446778899999999999999999998887766 788899999999999999999999998776544
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.96 E-value=3.2 Score=24.32 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHh-------cCCC----CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSAL-------LGLQ----DMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~-------~~~~----~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
++++.+|+.+ .|++|.++...|...++. +| + ...+..+..+|.... ....|+.+.|+.-+...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vg-E~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVG-EGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT--GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhC-ccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 6789999999 789999999988777664 23 2 136777888888763 45679999999988764
No 117
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=3 Score=33.75 Aligned_cols=58 Identities=26% Similarity=0.297 Sum_probs=47.7
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 32 NGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 32 ~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
..|..+ +.+.|+|+-..-+..+-..| ++..-+.+++...|.|.||+++..||.-.|+-
T Consensus 20 ~qF~~L-kp~~gfitg~qArnfflqS~---LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 20 AQFGQL-KPGQGFITGDQARNFFLQSG---LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHhcc-CCCCCccchHhhhhhHHhcC---CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 344444 57899999999888887766 77888999999999999999999999766653
No 118
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.62 E-value=2.6 Score=33.26 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=59.3
Q ss_pred CCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc---CC----CCCCHHHHHHHHHhcCCC
Q 033591 5 NSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL---GL----QDMSDEELMCMLREGDLD 77 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~---~~----~~~~~~e~~~~~~~~d~~ 77 (115)
++ |++++|. +..+..+.+++-.|.+.|. .+|.++.+++..++..+ +. .....+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 45 8999998 4456677899999999998 99999999988877653 20 223344455667778888
Q ss_pred CCCcccHHHHHHHHHh
Q 033591 78 GDGALNEMEFCTLMFR 93 (115)
Q Consensus 78 ~~g~I~~~eF~~~l~~ 93 (115)
..+.+.+.++..++..
T Consensus 74 ~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQ 89 (646)
T ss_pred ccceeeecchhHHHHh
Confidence 8888777777666653
No 119
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=85.55 E-value=0.29 Score=29.82 Aligned_cols=46 Identities=11% Similarity=-0.041 Sum_probs=30.1
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHH
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLK 51 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~ 51 (115)
+++|.++-.|...+.... ...+.-+...|+..|.+++|.||..|..
T Consensus 66 n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 66 NKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred CCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 467778888876654322 2333467889999999999999988854
No 120
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=85.54 E-value=15 Score=29.68 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 3 SANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
+++|.+++.+-+.++...... -....+...|+..+..+++.+...++......+. ..+ ++..++..+..+ .+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~-~rp---ev~~~f~~~s~~-~~~l 221 (746)
T KOG0169|consen 148 NKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKELT-KRP---EVYFLFVQYSHG-KEYL 221 (746)
T ss_pred ccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc-cCc---hHHHHHHHHhCC-CCcc
Confidence 457889998888876544322 2335677888888888899999999988888777 433 777777776554 6777
Q ss_pred cHHHHHHHHHhh
Q 033591 83 NEMEFCTLMFRL 94 (115)
Q Consensus 83 ~~~eF~~~l~~~ 94 (115)
+..+++.++...
T Consensus 222 s~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 222 STDDLLRFLEEE 233 (746)
T ss_pred CHHHHHHHHHHh
Confidence 777777766654
No 121
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.65 E-value=1.3 Score=34.40 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCC----CHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDM----SDEELMCMLREGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~----~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~ 92 (115)
.-+..+|..||.+++|.++..|++.+++..+ ... +..+.. -.+..|.+++..|+....
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P-~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAP-GSPWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCC-CCCCCCCcccccc------eecccceeehhhHHHHHH
Confidence 5678899999999999999999999999875 322 111111 122568888888876554
No 122
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=84.62 E-value=4.2 Score=24.67 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTL 90 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~ 90 (115)
+..+|-++...++...+..+++.++..+| ...+.+.++.++..+. |+ +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG-~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVG-AEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhC-cccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 45567777788888999999999999999 9999999999998874 33 45555543
No 123
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.84 E-value=2.9 Score=23.28 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=34.8
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
.+-.++|...+.+++..+.. .....+...|.. =..+.|+.++|.+.++..
T Consensus 5 ~sp~~~F~~L~~~l~~~l~~-~~~~~l~~~Y~~---~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 5 TSPWMPFPMLFSALSKHLPP-SKMDLLQKHYEE---FKKKKISREEFVRKLRQI 54 (70)
T ss_pred CCCcccHHHHHHHHHHHCCH-HHHHHHHHHHHH---HHHCCCCHHHHHHHHHHH
Confidence 34468899999988877642 223344444444 478899999999888875
No 124
>PLN02228 Phosphoinositide phospholipase C
Probab=82.17 E-value=11 Score=29.55 Aligned_cols=69 Identities=10% Similarity=0.117 Sum_probs=52.1
Q ss_pred cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHhhC
Q 033591 24 EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ--DMSDEELMCMLREGDLD----GDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~--~~~~~e~~~~~~~~d~~----~~g~I~~~eF~~~l~~~~ 95 (115)
..+..++..+|..+-. ++.++.++|...|+... . ..+.+.+..++..+... ..|.++.+.|..+|....
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~ 94 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQ-GERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDT 94 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhc-CCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcc
Confidence 4466899999999853 36899999999998864 2 24567788888877543 346799999999997653
No 125
>PLN02230 phosphoinositide phospholipase C 4
Probab=81.72 E-value=11 Score=29.64 Aligned_cols=69 Identities=22% Similarity=0.151 Sum_probs=50.5
Q ss_pred cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC---CCCHHHHHHHHHhcC-------CCCCCcccHHHHHHHHHh
Q 033591 24 EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ---DMSDEELMCMLREGD-------LDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~~e~~~~~~~~d-------~~~~g~I~~~eF~~~l~~ 93 (115)
..+..++..+|..+-.+ .+.++.++|...|.... . ..+.+++..++..+. .-..+.++.+.|..+|.+
T Consensus 25 ~~p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADG-DAHMSPEQLQKLMAEEG-GGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhC-CCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34567999999999544 48999999999998864 2 346677777776432 123456999999998876
Q ss_pred h
Q 033591 94 L 94 (115)
Q Consensus 94 ~ 94 (115)
.
T Consensus 103 ~ 103 (598)
T PLN02230 103 T 103 (598)
T ss_pred c
Confidence 4
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=80.69 E-value=3.2 Score=32.70 Aligned_cols=68 Identities=16% Similarity=0.015 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHHhcC
Q 033591 45 ITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEALNV 112 (115)
Q Consensus 45 i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~~ 112 (115)
|....+.++++.+-+-..+.--+.++|...|.+.+|-+++.+++..+.....+.+-++..-++...++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~ 602 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDP 602 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccC
Confidence 33444555555443122334445778889999999999999999999988888777777777766554
No 127
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.60 E-value=1.6 Score=24.33 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=36.7
Q ss_pred CCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 033591 42 KGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSP 96 (115)
Q Consensus 42 ~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 96 (115)
.-.+++.-|-.+++ ..++...+..+...++.=..++|+-++|+..++....
T Consensus 6 sp~~~F~~L~~~l~----~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALS----KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34566555555554 5567777888877776667889999999999987654
No 128
>PLN02222 phosphoinositide phospholipase C 2
Probab=80.45 E-value=12 Score=29.31 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCC--CCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHhhC
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQ--DMSDEELMCMLREGDL-DGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~--~~~~~e~~~~~~~~d~-~~~g~I~~~eF~~~l~~~~ 95 (115)
+..++..+|..+-. ++.++.++|...|+... . ..+.+.+..++..+.. ...+.++++.|..+|....
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q-~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~ 92 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQ-KQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDN 92 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhc-CCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCC
Confidence 44689999999853 57999999999998874 3 3467788888887532 2356799999999997643
No 129
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=80.02 E-value=11 Score=23.00 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=41.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~ 89 (115)
+..+|-+.-..++..+|.++++.+++..| ..+.+..+..+++.+.. .+.++.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaG-veVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVN-ADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34455555567788899999999999999 99999999888888743 35556654
No 130
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=79.94 E-value=11 Score=22.87 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=41.8
Q ss_pred HhhcCCCCCceeHHHHHHHHHh----------cCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcc
Q 033591 35 RLLMDEDKGLITFESLKKNSAL----------LGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPG 97 (115)
Q Consensus 35 ~~~D~~~~g~i~~~el~~~l~~----------~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 97 (115)
++||...+.+||.++++++++. -| ..++..-+.+++-+...++...++.. |+..+-+.+.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTg-eDiT~~iL~QII~E~E~~g~~~lp~~-~L~qlIr~yg~ 80 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSG-DDLTRSILLQIIAEEESGGEPVLSTD-FLTQIIRFYGG 80 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCC-chhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHhCh
Confidence 4678999999999999998875 25 56677777777776665566666654 44444434433
No 131
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=79.66 E-value=4.6 Score=22.10 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
.+--|+.+-++.++.++| .++++..+.++.+.+
T Consensus 28 ~NPpine~mir~M~~QMG-~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMG-RKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 355799999999999999 999999999998765
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=78.91 E-value=3.1 Score=24.39 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=29.3
Q ss_pred CCCceeHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 41 DKGLITFESLKKNSALLGL-QDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~-~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
.+|.++..|...+-..+.. ..+++.+...++..+........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4677777765444332210 1256666666666555444455666677666554
No 133
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.69 E-value=9 Score=21.16 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=21.7
Q ss_pred eHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 033591 46 TFESLKKNSALLGLQDMSDEELMCMLREGDL 76 (115)
Q Consensus 46 ~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~ 76 (115)
+.+++..+++..| ..++++++..+++.-+.
T Consensus 15 ~d~~m~~if~l~~-~~vs~~el~a~lrke~~ 44 (68)
T PF07308_consen 15 KDDDMIEIFALAG-FEVSKAELSAWLRKEDE 44 (68)
T ss_pred ChHHHHHHHHHcC-CccCHHHHHHHHCCCCC
Confidence 3456777887778 78888888888876443
No 134
>PRK00523 hypothetical protein; Provisional
Probab=77.20 E-value=5.7 Score=22.24 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
++.|..+= ..+-.|+.+-++.++.++| .++++.++.++.+.+
T Consensus 27 rk~~~k~l-~~NPpine~mir~M~~QMG-qKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQI-RENPPITENMIRAMYMQMG-RKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHH-HHCcCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 33444432 2455789999999999999 999999999998776
No 135
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=74.85 E-value=20 Score=23.16 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 033591 5 NSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSAL 56 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 56 (115)
++.|++..|+.++...+.. |....=-.+..++|..+++.++..
T Consensus 97 n~~i~~~~ff~~lQ~~lGd---------WIT~~~Lkh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 97 NGLIDIGKFFDILQPKLGD---------WITKNFLKHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred ccceeHHHHHHHHHHHhhh---------HHHHHHHhccchhhHHHHHHHHHH
Confidence 4557777777666544321 111111234556666666666654
No 136
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.65 E-value=7 Score=25.75 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCC-----CCHHHHHHH-HHhcCCCCCCcccHHHHHHH
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQD-----MSDEELMCM-LREGDLDGDGALNEMEFCTL 90 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~-----~~~~e~~~~-~~~~d~~~~g~I~~~eF~~~ 90 (115)
.++++++|..+++.+.+.+|..|+.++++.=. .. .....++-. .-.+-.+.+|.+..++-..+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr-~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNR-NANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc-ccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhh
Confidence 37899999999998999999999999988621 11 111222211 11233456888888765544
No 137
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=74.60 E-value=15 Score=22.30 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=43.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
..+|-+.-..++..+|.+++..+++..| ..+.+..+..+++.+.. .+.++.+.....
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaG-veVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVG-VEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 3455555567888999999999999999 98988888888887743 456677665443
No 138
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.45 E-value=6.4 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.094 Sum_probs=20.7
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
-+-++...||++++|.|+.-+++.++..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 45678889999999999999998877543
No 139
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=73.20 E-value=9.1 Score=21.81 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=39.9
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccc
Q 033591 40 EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLM 99 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~ 99 (115)
-+.|.|+.++...+.. .+.+.+.+.+++..... .|...+.-|+..++...+.+.
T Consensus 25 ~~~~Vit~e~~~~I~a----~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~L~ 78 (82)
T cd08330 25 HGKKVITQEQYSEVRA----EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPYLV 78 (82)
T ss_pred HHCCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChHHH
Confidence 3578899887666553 44678888999888754 577889999999987666543
No 140
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=72.87 E-value=11 Score=19.25 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE 73 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~ 73 (115)
...|+.+|.. +.+.+..++..+...+| ++...|..+|..
T Consensus 12 ~~~Le~~f~~-----~~~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----NPYPSREEREELAKELG---LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 3466777775 56899999999999888 888999988864
No 141
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=72.18 E-value=9.2 Score=20.54 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=26.2
Q ss_pred CCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 42 KGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 42 ~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
+-.+|.+|+..++..++ ..++..++-.+|..+
T Consensus 7 s~~lTeEEl~~~i~~L~-~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLD-EIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 34678889999999998 888888888888765
No 142
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.16 E-value=9.9 Score=21.17 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGD 75 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d 75 (115)
++.+...- ..+-.|+.+-++.++.+.| .++|+..+++++..+.
T Consensus 26 rk~~~k~l-k~NPpine~~iR~M~~qmG-qKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQL-KDNPPINEEMIRMMMAQMG-QKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHH-hhCCCCCHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 33444432 2455799999999999999 9999999999987653
No 143
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.10 E-value=11 Score=18.87 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcC--CCCCceeHHHHHHHHHh
Q 033591 28 QELSNGFRLLMD--EDKGLITFESLKKNSAL 56 (115)
Q Consensus 28 ~~~~~~F~~~D~--~~~g~i~~~el~~~l~~ 56 (115)
..+..+|..|.. .....++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 457788888852 34667999999998865
No 144
>PRK01844 hypothetical protein; Provisional
Probab=72.05 E-value=8.8 Score=21.49 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=32.5
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
++.|..+= ..+-.|+.+-++..+.+.| .++++.++.++.+.+
T Consensus 26 rk~~~k~l-k~NPpine~mir~Mm~QMG-qkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYL-QKNPPINEQMLKMMMMQMG-QKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHH-HHCCCCCHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 33444432 2445789999999999999 999999999998776
No 145
>PLN02223 phosphoinositide phospholipase C
Probab=71.57 E-value=23 Score=27.56 Aligned_cols=71 Identities=13% Similarity=-0.106 Sum_probs=51.5
Q ss_pred cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc----CCCCCCHHHHHHHHHhcCCCC--------CCcccHHHHHHHH
Q 033591 24 EGFMQELSNGFRLLMDEDKGLITFESLKKNSALL----GLQDMSDEELMCMLREGDLDG--------DGALNEMEFCTLM 91 (115)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~~e~~~~~~~~d~~~--------~g~I~~~eF~~~l 91 (115)
..+.+.++.+|..+ ..+.|.++.+.+.+.+.-+ |....+.++++.++..+-... .+.++.+.|..+|
T Consensus 12 ~~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 34557899999999 4778999999999988443 212467788888877643221 2569999999999
Q ss_pred HhhC
Q 033591 92 FRLS 95 (115)
Q Consensus 92 ~~~~ 95 (115)
.+..
T Consensus 91 ~s~~ 94 (537)
T PLN02223 91 FSTE 94 (537)
T ss_pred cCcc
Confidence 7654
No 146
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=71.08 E-value=6.8 Score=28.61 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=38.5
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSAL 56 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 56 (115)
.++.|.-.|+..+-...........-.++.|+..|.+++..||..|+...|..
T Consensus 346 ~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 346 SNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred ccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 35567777766654444444566678899999999999999998887766643
No 147
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=69.63 E-value=12 Score=20.48 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=19.4
Q ss_pred HhhcCCCCCceeHHHHHHHHHh
Q 033591 35 RLLMDEDKGLITFESLKKNSAL 56 (115)
Q Consensus 35 ~~~D~~~~g~i~~~el~~~l~~ 56 (115)
++||.....+|+.++++++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4688999999999999998875
No 148
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=67.86 E-value=22 Score=27.70 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=43.6
Q ss_pred CCCCCccHHHHHHHHHHhhC--CcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 3 SANSGVVFEDFFPAMVEKLG--AEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 3 ~~~~~i~~~eFl~~~~~~~~--~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+++|.|+..+...++..... +....++++.+....+.+.+|.|++++|..++-.+.
T Consensus 30 ~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 56789999999988765432 222357888999999999999999999988776543
No 149
>PLN02952 phosphoinositide phospholipase C
Probab=67.75 E-value=23 Score=27.97 Aligned_cols=55 Identities=5% Similarity=0.140 Sum_probs=41.9
Q ss_pred CCCceeHHHHHHHHHhcCC-CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCc
Q 033591 41 DKGLITFESLKKNSALLGL-QDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSP 96 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~-~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~ 96 (115)
+.|.++..++....+.+.. ...++.++..+|..+..+ .+.++.++|..+|.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 4689999999877776630 234788999999998654 468999999999887654
No 150
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=67.50 E-value=14 Score=18.52 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033591 48 ESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 48 ~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~ 89 (115)
+|...+|..+| .++.++.+.+..... ...++.++.+.
T Consensus 4 ~d~~~AL~~LG---y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG---YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT---S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 57778888888 788899888887653 23345555544
No 151
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=65.94 E-value=37 Score=22.97 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHH-HHHHHHHhcCCCCCCHHHHHHHH-HhcCCCCCCc
Q 033591 4 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFE-SLKKNSALLGLQDMSDEELMCML-REGDLDGDGA 81 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~-el~~~l~~~~~~~~~~~e~~~~~-~~~d~~~~g~ 81 (115)
=+|+||.+++...+......+ +...+++ .--++.||.. -+.+++..++ .+ .+|+-+.+ +....+
T Consensus 10 FDGTITl~Ds~~~itdtf~~~----e~k~l~~---~vls~tiS~rd~~g~mf~~i~-~s--~~Eile~llk~i~Id---- 75 (220)
T COG4359 10 FDGTITLNDSNDYITDTFGPG----EWKALKD---GVLSKTISFRDGFGRMFGSIH-SS--LEEILEFLLKDIKID---- 75 (220)
T ss_pred CCCceEecchhHHHHhccCch----HHHHHHH---HHhhCceeHHHHHHHHHHhcC-CC--HHHHHHHHHhhcccC----
Confidence 379999999999887765432 2334443 3457788855 4788888877 44 45555544 334333
Q ss_pred ccHHHHHHHHHhh
Q 033591 82 LNEMEFCTLMFRL 94 (115)
Q Consensus 82 I~~~eF~~~l~~~ 94 (115)
=.+.+|+.-++..
T Consensus 76 p~fKef~e~ike~ 88 (220)
T COG4359 76 PGFKEFVEWIKEH 88 (220)
T ss_pred ccHHHHHHHHHHc
Confidence 1356776665543
No 152
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=64.96 E-value=25 Score=20.38 Aligned_cols=31 Identities=16% Similarity=0.019 Sum_probs=21.2
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCMLREGD 75 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d 75 (115)
.||.+||....+..+ .++++.++..+++.+-
T Consensus 14 ~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr 44 (85)
T PF11116_consen 14 NITAKELLKYSKQYN-ISITKKQAEQIANILR 44 (85)
T ss_pred cCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 566777777777777 7777777776666553
No 153
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=64.20 E-value=18 Score=18.47 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE 73 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~ 73 (115)
..|...|. .+.+++..+...+...+| ++...|..+|..
T Consensus 13 ~~L~~~f~-----~~~~p~~~~~~~la~~l~---l~~~~V~~WF~n 50 (57)
T PF00046_consen 13 KVLEEYFQ-----ENPYPSKEEREELAKELG---LTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHH-----HSSSCHHHHHHHHHHHHT---SSHHHHHHHHHH
T ss_pred HHHHHHHH-----Hhcccccccccccccccc---ccccccccCHHH
Confidence 34555565 377889899888888888 888999888864
No 154
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=64.08 E-value=2.7 Score=28.44 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=40.2
Q ss_pred HHHhhcC-CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 33 GFRLLMD-EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 33 ~F~~~D~-~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
-|-.+|. ..+|++|..||.-+-.-+- +-+.=+..+|...|.++++.|+.+|+-..+....
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eeccccCCCccccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 3555564 4599999988765431111 1123346678889999999999999987765433
No 155
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=63.64 E-value=7.3 Score=22.11 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLD 77 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~ 77 (115)
.++.+... ....|+||..++..+|... .++++.+..++..+...
T Consensus 8 ~i~~Li~~--gK~~G~lT~~eI~~~L~~~---~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 8 AIKKLIEK--GKKKGYLTYDEINDALPED---DLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHH--HHHHSS-BHHHHHHH-S-S------HHHHHHHHHHHHTT
T ss_pred HHHHHHHH--HhhcCcCCHHHHHHHcCcc---CCCHHHHHHHHHHHHHC
Confidence 44554444 2368999999999988643 47888899888776443
No 156
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=62.32 E-value=29 Score=20.12 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.8
Q ss_pred CCceeHHH
Q 033591 42 KGLITFES 49 (115)
Q Consensus 42 ~g~i~~~e 49 (115)
+|.++..|
T Consensus 13 DG~v~~~E 20 (106)
T cd07316 13 DGRVSEAE 20 (106)
T ss_pred cCCcCHHH
Confidence 44444444
No 157
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.92 E-value=5.8 Score=32.46 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
..+...|+..|..++|.|+..+-...+...| +...-+.++|...+..+-|.+...+|...++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~---L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG---LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc---cchhhhhccccccccccCCccccccccccchHh
Confidence 4678899999999999999998887777666 778888889999998888999999998877654
No 158
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=61.39 E-value=13 Score=27.37 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcC--CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLG--LQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
..++.+|+.+=.++++......+..+-+.+. ..+.=..++..||..+|.|.++.++..|...+...
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc
Confidence 4788899998777777777776666544432 02344678999999999999999999888666543
No 159
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=61.20 E-value=12 Score=15.65 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=6.0
Q ss_pred CCCCCceeHHHH
Q 033591 39 DEDKGLITFESL 50 (115)
Q Consensus 39 ~~~~g~i~~~el 50 (115)
.+++|.|+.-++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 345555555444
No 160
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=60.96 E-value=36 Score=20.80 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033591 33 GFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 33 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~ 89 (115)
+|-+.-..++..+|.++++.++...| ..+.+..+..+++.+.. .+..+.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaG-vevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVG-ADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34444346677899999999999999 88888888888877743 34566653
No 161
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=59.45 E-value=29 Score=25.16 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHh
Q 033591 62 MSDEELMCMLRE 73 (115)
Q Consensus 62 ~~~~e~~~~~~~ 73 (115)
+|.+|+-++++.
T Consensus 303 itReeal~~v~~ 314 (343)
T TIGR03573 303 ITREEAIELVKE 314 (343)
T ss_pred CCHHHHHHHHHH
Confidence 444444444444
No 162
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=57.53 E-value=15 Score=19.98 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=31.4
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCC
Q 033591 40 EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDG 78 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~ 78 (115)
..++-++..++.+.+..-| ..++++.+...+..++.++
T Consensus 9 ~~~~P~g~~~l~~~L~~~g-~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLRG-EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHCC
Confidence 3556788999999998888 8889999999998887654
No 163
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=57.36 E-value=28 Score=23.07 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=23.9
Q ss_pred cCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 38 MDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 38 D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
..+.+|+++.++|.+.+..-+ ..++.+++.+++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~-~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG-LWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcC-CCCCHHHHHHHHhhC
Confidence 468999999999999888877 778899999998753
No 164
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=55.80 E-value=43 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 39 DEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 39 ~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
.+.+|++..++|...++.-+ ..++.+.+.+++..=
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~-~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY-KWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc-CCCCHHHHHHHHHcC
Confidence 57999999999999887666 678999999888653
No 165
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=53.73 E-value=42 Score=19.41 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=11.5
Q ss_pred CceeHHHHHHHHHhcCCCCCCHHHHHHH
Q 033591 43 GLITFESLKKNSALLGLQDMSDEELMCM 70 (115)
Q Consensus 43 g~i~~~el~~~l~~~~~~~~~~~e~~~~ 70 (115)
|+.+..+|...|..+| ++.+++.+.
T Consensus 61 Gy~N~KqllkrLN~f~---it~~e~~~a 85 (87)
T PF13331_consen 61 GYGNAKQLLKRLNMFG---ITREEFEEA 85 (87)
T ss_pred CCCCHHHHHHHHHHcC---CCHHHHHHH
Confidence 4444444444444444 444444433
No 166
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.70 E-value=20 Score=31.67 Aligned_cols=69 Identities=7% Similarity=0.098 Sum_probs=50.9
Q ss_pred cChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCC----CHHHHHHHH-HhcCCCCCCcccHHHHHHHHHhhC
Q 033591 24 EGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDM----SDEELMCML-REGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 24 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~----~~~e~~~~~-~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
++.-+++.+++..||++.+|+|...++...++.+. .++ +... +++ -.+....++.|++.+-+.++.+..
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~-ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD-PPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC-CccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 34457899999999999999999999999999874 222 1111 333 245666788999988888776654
No 167
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=53.51 E-value=26 Score=18.86 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=19.6
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHH
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCM 70 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~ 70 (115)
.|+.++|..+|+... ..++++++.+.
T Consensus 29 ~it~~DF~~Al~~~k-pSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVK-PSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCG-GSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 478888888888887 77888877654
No 168
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=53.18 E-value=39 Score=21.96 Aligned_cols=68 Identities=12% Similarity=0.124 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcC----CCCCc-eeHHHHHHHHHhcCC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 28 QELSNGFRLLMD----EDKGL-ITFESLKKNSALLGL---QDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 28 ~~~~~~F~~~D~----~~~g~-i~~~el~~~l~~~~~---~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
..+++.|+.|-. ..+|. ++-..+..+|+.++- ..++.-.+.-.|..+-...-+.|+|++|...|....
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 345666666643 33443 555567778887630 455566666667666555667899999977776554
No 169
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=52.34 E-value=47 Score=19.52 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
++|.+|.++...+-. .+.+.+.+.+++..+.. .|.-.|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~a----~~T~~~k~~~LLdiLp~--RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES----QTTSRRKTMKLLDILPS--RGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc----cCChHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 678999887666553 34567888888887654 466789999999974
No 170
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=52.16 E-value=43 Score=25.95 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh---cCC-----CCCCcccHHHHHHHHHh
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE---GDL-----DGDGALNEMEFCTLMFR 93 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~---~d~-----~~~g~I~~~eF~~~l~~ 93 (115)
.-+|..|-..+.+.++..-|..+|++.| ..-++.-+..++.. ++. ...+.++.+-|..++..
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstG-LrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTG-LRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcC-CCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3468888666679999999999999999 77777666666543 332 23346778888776553
No 171
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=51.70 E-value=46 Score=19.24 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=34.9
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
+.|.+|.++...+-. .+.+.+...+++..+.. .|.-.|..|+.+++..
T Consensus 31 ~~gvlt~~~~~~I~~----~~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 31 QKDILTDSMAESIMA----KPTSFSQNVALLNLLPK--RGPRAFSAFCEALRET 78 (90)
T ss_pred HcCCCCHHHHHHHHc----CCCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhc
Confidence 468999887655542 33567788888887654 4667899999999864
No 172
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=51.61 E-value=10 Score=25.24 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033591 8 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLR 72 (115)
Q Consensus 8 i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~ 72 (115)
|+.+-|.+-+++..- ....+.++++|..||+..=-..+.+++.++|...| .--...++...+.
T Consensus 36 l~Le~fQAGLSW~tV-L~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~g-IIR~r~KI~A~i~ 98 (188)
T COG2818 36 LCLEGFQAGLSWLTV-LKKREAFREAFHGFDPEKVAAMTEEDVERLLADAG-IIRNRGKIKATIN 98 (188)
T ss_pred HHHHHHhccchHHHH-HHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcc-hhhhHHHHHHHHH
Confidence 445555554433321 12346799999999999999999999999998877 5445555554443
No 173
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.36 E-value=37 Score=25.65 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=42.4
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTL 90 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~ 90 (115)
.-++|-.+ ..-+|+||-..-+..|.. .+++..-+.++|+..|.+.+|.++-+||.-.
T Consensus 446 yde~fy~l-~p~~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTL-SPVNGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcc-cccCceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 44555554 345788887666665543 4577888999999999999999999999653
No 174
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.29 E-value=22 Score=27.64 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc
Q 033591 25 GFMQELSNGFRLLMDEDKGLITFESLKKNSALL 57 (115)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 57 (115)
-+..++..++.+.|.+.+|.++..||..++..+
T Consensus 262 lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 262 LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 455789999999999999999999998887653
No 175
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=49.74 E-value=39 Score=19.55 Aligned_cols=55 Identities=7% Similarity=-0.058 Sum_probs=37.7
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcc
Q 033591 40 EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPG 97 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 97 (115)
-+.|.++.++...+...-. .......+.+++..+... |.=.|..|+..+....+.
T Consensus 26 ~q~~VLt~~d~EeI~~~~t-~~~r~~ka~~LLdiL~~r--G~~Af~~F~~aL~~~yp~ 80 (86)
T cd08785 26 RQCKVLDEQDEEEVLSSPR-LPIRANRTGRLLDILATR--GKRGYVAFLESLEFYYPE 80 (86)
T ss_pred HhcCCCCHHHHHHHhCCCc-cccHHHHHHHHHHHHHhc--CcchHHHHHHHHHHhCHH
Confidence 3678999888887775433 333457888888877654 445688899888655443
No 176
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=48.58 E-value=49 Score=22.65 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=39.2
Q ss_pred CccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhc-CCCCCCHHHHHHHHHhc
Q 033591 7 GVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALL-GLQDMSDEELMCMLREG 74 (115)
Q Consensus 7 ~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~e~~~~~~~~ 74 (115)
..+|...-+.....++.+.+..-+...|+.|. +.|.++. +...|+.+ | .+++++++..+...+
T Consensus 166 gfdf~AAk~L~~~KCNkCHTl~SVed~lrkYk--KkGkid~--iVkrMqa~Pn-SgIt~eDa~~I~~YL 229 (233)
T PF10643_consen 166 GFDFAAAKALFDRKCNKCHTLKSVEDALRKYK--KKGKIDK--IVKRMQAVPN-SGITDEDAPQIMMYL 229 (233)
T ss_dssp T--HHHHHHHHHHHTTSSS-SHHHHHHHHHTT--TTT-HHH--HHHHHHHSTT-----HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhccccccHHHHHHHHHHHH--hcCCHHH--HHHHHHhCCC-CCCCHHHHHHHHHHH
Confidence 46788888888888888888888999999775 4555442 23334443 6 678899988876543
No 177
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=48.26 E-value=54 Score=19.01 Aligned_cols=50 Identities=14% Similarity=0.063 Sum_probs=36.6
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 40 EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
-++|.|+.++...+.. .+.+++.+.+++..... .|....+-|..++....
T Consensus 25 l~n~~it~E~y~~V~a----~~T~qdkmRkLld~v~a--kG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 25 LKNDYFSTEDAEIVCA----CPTQPDKVRKILDLVQS--KGEEVSEYFLYLLQQLA 74 (85)
T ss_pred hccCCccHHHHHHHHh----CCCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH
Confidence 4689999999776653 45788999999887543 45566777888877554
No 178
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=48.11 E-value=22 Score=16.45 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=10.4
Q ss_pred CCCccHHHHHHHHHH
Q 033591 5 NSGVVFEDFFPAMVE 19 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~ 19 (115)
+|+|++++++.+.+.
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 467777887776653
No 179
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.79 E-value=56 Score=19.08 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=37.2
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcc
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPG 97 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 97 (115)
+.|.+|.+....+-..-+ ..-..+.+.+++..+. .+. =-|..|+.+++.+..+
T Consensus 30 ~~~ilT~~d~e~I~aa~~-~~g~~~~ar~LL~~L~-rg~--~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 30 EQGLLTEEDRNRIEAATE-NHGNESGARELLKRIV-QKE--GWFSKFLQALRETEHH 82 (88)
T ss_pred hcCCCCHHHHHHHHHhcc-ccCcHHHHHHHHHHhc-cCC--cHHHHHHHHHHHcCch
Confidence 566888776665555434 3456788888998887 444 4588999999987654
No 180
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=47.53 E-value=61 Score=19.47 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=35.3
Q ss_pred eeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 45 ITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 45 i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
||.+++..+|...| ..++++.+..+++.+.. .+.++.+.....
T Consensus 17 ~ta~~I~~IL~aaG-veVe~~~~~~~~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAG-AEIEPERVKLFLSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcC-CCcCHHHHHHHHHHHcC-----CCHHHHHHHHHh
Confidence 99999999999999 99999999999888742 466777765544
No 181
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=47.32 E-value=40 Score=20.40 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=7.5
Q ss_pred CccHHHHHHHHHHhh
Q 033591 7 GVVFEDFFPAMVEKL 21 (115)
Q Consensus 7 ~i~~~eFl~~~~~~~ 21 (115)
.++..+-..++....
T Consensus 11 ~lt~sEa~~iL~~~~ 25 (112)
T PRK14981 11 YITIAEAKEILSEIE 25 (112)
T ss_pred cccHHHHHHHHHHHH
Confidence 455555555554433
No 182
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=46.20 E-value=47 Score=17.78 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=15.5
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMC 69 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~ 69 (115)
+++..+|+.+ -+|.++..++...+..+..+..+.+|+.-
T Consensus 18 ~e~~~~~~~i---~~g~~s~~qiaAfL~al~~kget~~Eiag 56 (66)
T PF02885_consen 18 EEAKAAFDAI---LDGEVSDAQIAAFLMALRMKGETPEEIAG 56 (66)
T ss_dssp HHHHHHHHHH---HTTSS-HHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHH---HcCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4555555544 23445555544444443212244444433
No 183
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=46.10 E-value=33 Score=19.14 Aligned_cols=17 Identities=12% Similarity=0.005 Sum_probs=13.0
Q ss_pred CCCCceeHHHHHHHHHh
Q 033591 40 EDKGLITFESLKKNSAL 56 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~ 56 (115)
-..|++..+|+..++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 36788888888887765
No 184
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.98 E-value=1.1e+02 Score=21.73 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHhh-cCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH--hcCCCCCCcccHHHHHHHHHhhCcc
Q 033591 25 GFMQELSNGFRLL-MDEDKGLITFESLKKNSALLGLQDMSDEELMCMLR--EGDLDGDGALNEMEFCTLMFRLSPG 97 (115)
Q Consensus 25 ~~~~~~~~~F~~~-D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~--~~d~~~~g~I~~~eF~~~l~~~~~~ 97 (115)
.....+.++|..+ |+..+..|..+.+.+.++.+| +.++++..++- .+....-+..+.++|+.-+....+.
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg---~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~d 133 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLG---VEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCD 133 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhC---CCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCC
Confidence 4446777777776 666667899999999999999 44455544432 2444445678889998877665543
No 185
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.75 E-value=40 Score=21.56 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=41.3
Q ss_pred HHHHHhhcCCCCCceeHHHH---HHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 31 SNGFRLLMDEDKGLITFESL---KKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el---~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
.-+|++.. -+|.++..|. +.+++.. ..++.+++..++.....-+...+++-.|...+++
T Consensus 33 ~Llf~Vm~--ADG~v~~~E~~a~r~il~~~--f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 33 ALLFHVME--ADGTVSESEREAFRAILKEN--FGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHHh--cccCcCHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36788764 5677887774 3444432 2488999999998876666777888888777764
No 186
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=44.67 E-value=49 Score=19.03 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=20.0
Q ss_pred eeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 45 ITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 45 i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
|+.++++++.+-.. ..++++++.++...+
T Consensus 1 i~~~~v~~lA~La~-L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLAR-LELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 46677777777666 678888877665443
No 187
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.32 E-value=61 Score=18.53 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
++|.+|.+....+-. .....+.+.+++..... .|.-.|..|+.++....
T Consensus 27 ~~~Vlt~~~~e~I~~----~~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 27 SRGVFTPDMIEEIQA----AGSRRDQARQLLIDLET--RGKQAFPAFLSALRETG 75 (84)
T ss_pred hcCCCCHHHHHHHHc----CCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcC
Confidence 577888877666553 33557788888887765 45578999999998654
No 188
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=43.29 E-value=56 Score=17.83 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=34.9
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
.+|.++.++...+.. ...+.+.+.+++..+... |.=.|..|+..++...
T Consensus 24 ~~~vlt~~e~~~i~~----~~~~~~k~~~Lld~l~~k--g~~af~~F~~~L~~~~ 72 (80)
T cd01671 24 SDGVLTEEEYEKIRS----ESTRQDKARKLLDILPRK--GPKAFQSFLQALQETD 72 (80)
T ss_pred HcCCCCHHHHHHHHc----CCChHHHHHHHHHHHHhc--ChHHHHHHHHHHHhcC
Confidence 568999888776553 223677888888887653 4456888999988644
No 189
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=41.60 E-value=73 Score=18.67 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE 73 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~ 73 (115)
.+.+..+|..+- ..|+..+.+.+++.+| +++.++..+-..
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG---Lse~~I~~i~~~ 42 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG---LSENEIDVAKAN 42 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 345666666652 2455666777777777 566665555433
No 190
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=41.05 E-value=49 Score=16.53 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE 73 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~ 73 (115)
..+..+|.. +. +.+..+...+...+| ++...+..+|..
T Consensus 13 ~~L~~~f~~---~~--~P~~~~~~~la~~~~---l~~~qV~~WF~n 50 (56)
T smart00389 13 EELEKEFQK---NP--YPSREEREELAAKLG---LSERQVKVWFQN 50 (56)
T ss_pred HHHHHHHHh---CC--CCCHHHHHHHHHHHC---cCHHHHHHhHHH
Confidence 345555552 23 788899888888888 788888888865
No 191
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=40.87 E-value=68 Score=18.79 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCC
Q 033591 42 KGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDG 80 (115)
Q Consensus 42 ~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g 80 (115)
.|.||.+ ++++..+ ++++|+..+...++..+..
T Consensus 47 ~Glis~~---EA~~rY~---Ls~eEf~~W~~av~rhge~ 79 (90)
T PF06627_consen 47 GGLISVE---EACRRYG---LSEEEFESWQRAVDRHGEN 79 (90)
T ss_dssp CTTS-HH---HHHHCTT---SSHHHHHHHHHHCCT--TT
T ss_pred cCCCCHH---HHHHHhC---CCHHHHHHHHHHHHHHhHH
Confidence 5777744 4666666 8999999998887765543
No 192
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=39.75 E-value=1e+02 Score=21.69 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=31.7
Q ss_pred CCCCceeHHHHH---HHHHhcCCCCCCHHH---HHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 40 EDKGLITFESLK---KNSALLGLQDMSDEE---LMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 40 ~~~g~i~~~el~---~~l~~~~~~~~~~~e---~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
.-+|.|+..|+. .++..++ +++++ +..+|+... ....++.+|+..+....
T Consensus 67 kADG~Vse~Ei~~~~~l~~~~~---l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIRIASQLMDRMN---LHGEARRAAQQAFREGK---EPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHHh
Confidence 568999999976 2333345 56666 555555442 33477888888776544
No 193
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=39.40 E-value=62 Score=18.66 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhh
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRL 94 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 94 (115)
..|.+|.++...+-. .+...+++.+++..+-. .|.=.|.-|++.++..
T Consensus 25 ~~gvlt~~~~e~I~~----~~t~~~qa~~Lld~L~t--rG~~Af~~F~~aL~~~ 72 (86)
T cd08323 25 SDGVLTLDEEEKVKS----KATQKEKAVMLINMILT--KDNHAYVSFYNALLHE 72 (86)
T ss_pred hcCCCCHHHHHHHHc----CCChHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc
Confidence 577899888666553 33567888888887765 3556789999999854
No 194
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=39.38 E-value=11 Score=23.11 Aligned_cols=54 Identities=17% Similarity=0.113 Sum_probs=27.3
Q ss_pred CCCCceeHHHHHHHHHhc-CCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHh
Q 033591 40 EDKGLITFESLKKNSALL-GLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFR 93 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~-~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~ 93 (115)
.-+|.|+..|...+...+ ....+++.+...+...++......+++.+|+..+..
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 357888888876665554 102244555555555444333334555666554443
No 195
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.07 E-value=82 Score=24.15 Aligned_cols=97 Identities=9% Similarity=0.028 Sum_probs=53.7
Q ss_pred CccHHHHHHHHHHhhCCc---ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHh-cCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 7 GVVFEDFFPAMVEKLGAE---GFMQELSNGFRLLMDEDKGLITFESLKKNSAL-LGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 7 ~i~~~eFl~~~~~~~~~~---~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
..+-.||+.+.+...... -..+.++.+-+.+|.|.+|.|+.+|=-..++. +. ..-+...-.+-|.. .|..|
T Consensus 44 ~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmk-y~~~~~kr~~~fH~----dD~~I 118 (575)
T KOG4403|consen 44 RATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMK-YRDSTRKRSEKFHG----DDKHI 118 (575)
T ss_pred hhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhh-cccchhhhhhhccC----Cccce
Confidence 456666755544333222 12367788888999999999998875555543 11 11111111222221 35678
Q ss_pred cHHHHHHHHHhhCcc--cccchhHHHHH
Q 033591 83 NEMEFCTLMFRLSPG--LMKNSTNLFLE 108 (115)
Q Consensus 83 ~~~eF~~~l~~~~~~--~~~~~~~~~~~ 108 (115)
+.++.-......... -.+...+|+..
T Consensus 119 tVedLWeaW~~Sev~nWT~e~tvqWLi~ 146 (575)
T KOG4403|consen 119 TVEDLWEAWKESEVHNWTNERTVQWLIN 146 (575)
T ss_pred eHHHHHHHHHhhhhhcchHHHHHHHHHH
Confidence 888887777654322 23455566654
No 196
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=38.89 E-value=93 Score=19.49 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=28.0
Q ss_pred CCCceeHHHHHHHHHhcCC--------CCCCHHHHHHHHHhcCCCCCC-cccHHHHHH
Q 033591 41 DKGLITFESLKKNSALLGL--------QDMSDEELMCMLREGDLDGDG-ALNEMEFCT 89 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~--------~~~~~~e~~~~~~~~d~~~~g-~I~~~eF~~ 89 (115)
++..||.+||.+++..-.+ ..++++++.++.+.+.....+ .++..|-+.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr 137 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALR 137 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHH
Confidence 4556777777776665320 124667777776666554444 366665544
No 197
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=38.81 E-value=90 Score=18.88 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=32.5
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~ 89 (115)
.||.+.++.++...| ..+.+..+..+++.+.. ++.++.+.
T Consensus 16 ~it~e~I~~IL~AAG-veVee~~~k~~v~aL~G-----kdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAG-VEVDEARVKALVAALED-----VNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 799999999999999 99999988888877642 45566654
No 198
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=38.54 E-value=72 Score=18.34 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=21.7
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
.|+.++++++.+... ..++++++..+.+.+
T Consensus 2 ~i~~e~i~~la~La~-l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLAR-LELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 367788888877777 778888877665443
No 199
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=38.53 E-value=1e+02 Score=19.50 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=35.5
Q ss_pred CCCCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhc-------CCCCCceeHHHHHHHHHhc-CCCCCCHHHHHHHHH
Q 033591 1 MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLM-------DEDKGLITFESLKKNSALL-GLQDMSDEELMCMLR 72 (115)
Q Consensus 1 ~~~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D-------~~~~g~i~~~el~~~l~~~-~~~~~~~~e~~~~~~ 72 (115)
|+.+=+.+|..||...- ..+. -...+++.+...|. -+..+.|+.+.|+..|+.. . ..++++-...+|-
T Consensus 1 ~~~~~~~lsp~eF~qLq-~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe-~d~P~~lc~hLF~ 76 (138)
T PF14513_consen 1 MAKEWVSLSPEEFAQLQ-KYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE-VDLPEDLCQHLFL 76 (138)
T ss_dssp -----S-S-HHHHHHHH-HHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT--S--HHHHHHHHH
T ss_pred CccceeccCHHHHHHHH-HHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc-CCCCHHHHHHHHH
Confidence 55666788999997742 2221 11234555544442 2345589999999999885 4 5677777788876
Q ss_pred hcCC
Q 033591 73 EGDL 76 (115)
Q Consensus 73 ~~d~ 76 (115)
.+..
T Consensus 77 sF~~ 80 (138)
T PF14513_consen 77 SFQK 80 (138)
T ss_dssp HS--
T ss_pred HHhC
Confidence 6543
No 200
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=38.40 E-value=81 Score=21.49 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=21.5
Q ss_pred CCCccHHHHHHHHHHhhCCcC-----------hHHHHHHHHHhhcCCCCCce
Q 033591 5 NSGVVFEDFFPAMVEKLGAEG-----------FMQELSNGFRLLMDEDKGLI 45 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~~~~~~-----------~~~~~~~~F~~~D~~~~g~i 45 (115)
.|.++|+.++.-|+....+.. ..+.+..--+.||++++|.|
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPI 226 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCce
Confidence 466777777776655433211 11344444555566655554
No 201
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=37.84 E-value=89 Score=18.54 Aligned_cols=45 Identities=7% Similarity=-0.072 Sum_probs=17.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLR 72 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~ 72 (115)
+++..+-..+-..+...++..++...+..+-....+++++.++-.
T Consensus 39 ~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~ 83 (96)
T PF11829_consen 39 DEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRA 83 (96)
T ss_dssp HHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 344444444433333333444444444444213344445544433
No 202
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=37.79 E-value=88 Score=24.88 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHh-cCCCCCCHHHHHHHHHhc---CCC--CCCcccHHHHHHH
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSAL-LGLQDMSDEELMCMLREG---DLD--GDGALNEMEFCTL 90 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~e~~~~~~~~---d~~--~~g~I~~~eF~~~ 90 (115)
..+.++|++.|.+.+|.++-.|+-..=+. ++ .++++.+++.+-... -++ .+..++...|+.+
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~-~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL 262 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFN-TPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFL 262 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcC-CCCCHHHHHHHHHHHHhhcCchhhhccccccchHHH
Confidence 56788999999999999998887664433 46 777777665553322 111 2334555556544
No 203
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.18 E-value=63 Score=19.83 Aligned_cols=14 Identities=0% Similarity=-0.062 Sum_probs=8.6
Q ss_pred CccHHHHHHHHHHh
Q 033591 7 GVVFEDFFPAMVEK 20 (115)
Q Consensus 7 ~i~~~eFl~~~~~~ 20 (115)
.|++++-..++...
T Consensus 12 yiti~Eak~il~~~ 25 (114)
T COG1460 12 YITISEAKKILSKV 25 (114)
T ss_pred CccHHHHHHHHHHh
Confidence 46666666666554
No 204
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=36.90 E-value=53 Score=18.72 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=13.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHH
Q 033591 49 SLKKNSALLGLQDMSDEELMCML 71 (115)
Q Consensus 49 el~~~l~~~~~~~~~~~e~~~~~ 71 (115)
|+-.+|+.+| ..++++|..-+-
T Consensus 21 EIL~ALrkLg-e~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLG-EKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT-----HHHHHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH
Confidence 4667899999 999999866544
No 205
>PHA03155 hypothetical protein; Provisional
Probab=36.86 E-value=1e+02 Score=18.93 Aligned_cols=90 Identities=10% Similarity=-0.052 Sum_probs=49.6
Q ss_pred CCCCCCCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCC
Q 033591 1 MASANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDG 80 (115)
Q Consensus 1 ~~~~~~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g 80 (115)
|+++....+.++..+-+...-. ....++.-....-..+++.+|..+=..++.+.- ..++..-..++-..+...-.+
T Consensus 1 mas~~~~~tvEeLaaeL~kL~~---ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v-~~Lt~~A~~KIe~kVrk~~~~ 76 (115)
T PHA03155 1 MASGRACADVEELEKELQKLKI---ENKALKKKLLQHGNPEDELLTPAQKDAIINSLV-NKLTKKAEEKIRERVLKDLLP 76 (115)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHccCCCCccccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 6777778899998887655422 224566666555456678899887444444432 223222222332222222234
Q ss_pred cccHHHHHHHHHhh
Q 033591 81 ALNEMEFCTLMFRL 94 (115)
Q Consensus 81 ~I~~~eF~~~l~~~ 94 (115)
-++-+++..++.+.
T Consensus 77 ~vTk~q~~~al~~l 90 (115)
T PHA03155 77 LVSKNQCMEAIADI 90 (115)
T ss_pred hccHHHHHHHHhcC
Confidence 45666666666554
No 206
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=36.81 E-value=38 Score=22.59 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=31.7
Q ss_pred HHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHH
Q 033591 53 NSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEA 109 (115)
Q Consensus 53 ~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~ 109 (115)
.+..|+ ..+++++++.+...+..+ --.++|..|..++-.+....-..-..||.++
T Consensus 86 ~~~~L~-~~Lt~~Qie~vkd~mTyg-~v~~T~k~y~~mvP~Lteeek~~I~~~L~eA 140 (188)
T PF12875_consen 86 YMAKLS-KYLTEEQIEQVKDGMTYG-VVPFTYKGYLDMVPSLTEEEKAQILTWLKEA 140 (188)
T ss_dssp HHHHHT-TT--HHHHHHHHHHCTTT-HHHHHHHHHHHH-TT--HHHHHHHHHHHHHH
T ss_pred HHHHHH-hhcCHHHHHHHHccccce-ehhhhHHHHHHHcCcccHHHHHHHHHHHHHH
Confidence 456678 889999999999888642 2245678887776554433222334555543
No 207
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=35.60 E-value=90 Score=20.93 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE 73 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~ 73 (115)
.+++.+|. +++||.-.|=+++-+.|+ +++.+|.-||++
T Consensus 115 ~~LE~~F~-----~~~Yvvg~eR~~LA~~L~---LsetQVkvWFQN 152 (197)
T KOG0843|consen 115 LKLEHAFE-----GNQYVVGAERKQLAQSLS---LSETQVKVWFQN 152 (197)
T ss_pred HHHHHHHh-----cCCeeechHHHHHHHHcC---CChhHhhhhhhh
Confidence 34555554 789999999888888888 888898888864
No 208
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=35.58 E-value=62 Score=16.82 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLR 72 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~ 72 (115)
..|+|+..|+..=+..+- ...+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~-~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAY-AARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHc
Confidence 478888888877666654 4556667666654
No 209
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=35.30 E-value=1.6e+02 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHH
Q 033591 6 SGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKK 52 (115)
Q Consensus 6 ~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~ 52 (115)
|.++|.+|...+.......+...++..+|+.+-++.. ++..+||..
T Consensus 803 ~qv~~~e~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 803 GQVQLLEFEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred cceeHHHHHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6799999999888776666777888999998876655 777777765
No 210
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=34.95 E-value=83 Score=17.33 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=6.9
Q ss_pred ceeHHHHHHHHHh
Q 033591 44 LITFESLKKNSAL 56 (115)
Q Consensus 44 ~i~~~el~~~l~~ 56 (115)
..+.++|+..+..
T Consensus 26 ~~~W~~~~~~~~~ 38 (96)
T PF03732_consen 26 FITWEEFKDAFRK 38 (96)
T ss_pred CCCHHHHHHHHHH
Confidence 3455666555544
No 211
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=34.77 E-value=1.2e+02 Score=19.22 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=18.3
Q ss_pred eHHHHHHHHHhcCCCCCCHHHHHHHH
Q 033591 46 TFESLKKNSALLGLQDMSDEELMCML 71 (115)
Q Consensus 46 ~~~el~~~l~~~~~~~~~~~e~~~~~ 71 (115)
...=+.+-+.++| ..++++|+..++
T Consensus 91 ~~~ll~~e~eklG-i~Vs~~El~d~l 115 (145)
T PF13623_consen 91 QNILLEQEFEKLG-ITVSDDELQDML 115 (145)
T ss_pred HHHHHHHHHHHhC-CccCHHHHHHHH
Confidence 3333566677789 888999988877
No 212
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.58 E-value=1e+02 Score=21.23 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=30.5
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 39 DEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 39 ~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
.+++|.+....|..-+.++. .+++..|+..+-+.+
T Consensus 162 G~gegQVpL~kL~~~l~KLp-~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLP-RNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCC-ccCCHHHHHHHHHHH
Confidence 57899999999999999999 999999998875543
No 213
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=34.43 E-value=1.3e+02 Score=19.26 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHHHh--hCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 6 SGVVFEDFFPAMVEK--LGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 6 ~~i~~~eFl~~~~~~--~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
..++=..|..+|... +...-+...+--+|..+-..+...|+.++|..+|..+.
T Consensus 17 ~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 17 TEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 357777788877533 22334557888899998767777899999999988763
No 214
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=34.04 E-value=89 Score=17.42 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=26.8
Q ss_pred hCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033591 21 LGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLR 72 (115)
Q Consensus 21 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~ 72 (115)
+......+.+++-|... =+.|++.|+..+-..+-...++.+++.++..
T Consensus 9 Lh~G~~~e~vk~~F~~~----~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 9 LHEGEDPEEVKEEFKKL----FSDVSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred HhCCCCHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 33344445666666542 3456777766655554113477777776654
No 215
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=34.00 E-value=1.3e+02 Score=19.36 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=30.8
Q ss_pred HHHHHHHhh-cCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 033591 29 ELSNGFRLL-MDEDKGLITFESLKKNSALLGLQDMSDEELMCMLR 72 (115)
Q Consensus 29 ~~~~~F~~~-D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~ 72 (115)
.+..+|..| +.+.+-+.+.+++..-|...| ..++++.+.+.
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG---F~~~eI~~Al~ 45 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAG---FEDEEINKALD 45 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 355567666 344577888999999999999 78888877654
No 216
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=1.1e+02 Score=18.53 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033591 34 FRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 34 F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~ 92 (115)
+-.+..-+. .|+.+.++.++...| ..+.+..+..++..+.. ++.+|-+.-..
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaG-veve~~r~k~lvaaLeg-----~~idE~i~~~~ 58 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAG-VEVEEARAKALVAALEG-----VDIDEVIKNAA 58 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcC-CCccHHHHHHHHHHhcC-----CCHHHHHHHhc
Confidence 333433333 899999999999999 99999988888887753 46666655433
No 217
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=33.34 E-value=1.3e+02 Score=21.90 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccH---HHHHHHHHhhCcc
Q 033591 39 DEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNE---MEFCTLMFRLSPG 97 (115)
Q Consensus 39 ~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~---~eF~~~l~~~~~~ 97 (115)
+...|.++..++.++|.+ .+.+.+|+.+.+ ..+.|.+.| .++....++...+
T Consensus 213 persG~lP~~dlv~lcfS---gk~t~~El~k~i----~g~gG~~aylGT~d~~~v~~~~~~G 267 (358)
T COG3426 213 PERSGTLPTGDLVRLCFS---GKYTEEELLKKI----TGKGGLVAYLGTNDAKEVERRIEQG 267 (358)
T ss_pred cccCCCCChHHHHHHHhc---CcccHHHHHHHh----hcCCceEEEeccchHHHHHHHHHcc
Confidence 456788888888887753 347777766655 233454444 4455555544443
No 218
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=32.49 E-value=66 Score=18.80 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=36.3
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcc
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPG 97 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~ 97 (115)
..|.|+.++...+-. .+.+.+.+.+++..+.. .|.-.+.-|++.++...+.
T Consensus 34 ~~~Vlt~ee~e~I~~----~~t~~~qAr~Lld~l~~--KG~~A~~~F~~~L~e~~~~ 84 (94)
T cd08329 34 SANVITEQEYDVIKQ----KTQTPLQARELIDTVLV--KGNAAAEVFRNCLKKNDPV 84 (94)
T ss_pred HcCCCCHHHHHHHHc----CCChHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCHh
Confidence 578999888766553 33457888888887654 4556788899988765544
No 219
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=32.32 E-value=1.1e+02 Score=17.80 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=33.1
Q ss_pred CCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033591 41 DKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 41 ~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~ 92 (115)
.+-.|+-.+++..+...- .-.+..+...+=..+|...+++||.=||-...+
T Consensus 19 ~r~IVPW~~F~~~L~~~h-~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVH-PISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhc-CCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 445788999999988875 333344555555668888899998666655444
No 220
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.62 E-value=23 Score=23.51 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHH
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG----DLDGDGALNEMEFCTLM 91 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~----d~~~~g~I~~~eF~~~l 91 (115)
.+.++++|.-||+..=...+.+++.+++..-+ .--....+..++.+. .... + ++.+|+-..
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~-IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~f 116 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDG-IIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSF 116 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCcc-chhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhc
Confidence 46799999999999888889899999887766 434455565555421 1111 1 677777544
No 221
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=30.83 E-value=75 Score=15.60 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=7.4
Q ss_pred CceeHHHHHHHHHhc
Q 033591 43 GLITFESLKKNSALL 57 (115)
Q Consensus 43 g~i~~~el~~~l~~~ 57 (115)
+.++..++...++.+
T Consensus 17 ~~~~~~~v~~~v~~L 31 (47)
T PF02671_consen 17 GRISRSEVIEEVSEL 31 (47)
T ss_dssp TCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 455555555444443
No 222
>PLN00153 histone H2A; Provisional
Probab=30.12 E-value=1.5e+02 Score=18.68 Aligned_cols=63 Identities=25% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 033591 11 EDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNE 84 (115)
Q Consensus 11 ~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~ 84 (115)
..|++++...+.. +.++.+-..--.++...|++.-+..++ -.++|+.++++.....+.|.++.
T Consensus 48 ~VYLAAVLEYLta----EVLELAgnaa~d~kk~RItPrHi~lAI-------~nDeEL~~Ll~~vTIa~GGV~P~ 110 (129)
T PLN00153 48 PVYLAAVLEYLTA----EVLELAGNAARDNKKNRIVPRHIQLAI-------RNDEELGKLLGEVTIASGGVLPN 110 (129)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHhcCCCccChHHHHhhc-------cCcHHHHHHHCCCccCCCccCCC
Confidence 3455555444432 344445554445567788888776555 25688999998877777777665
No 223
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=29.65 E-value=77 Score=18.04 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.2
Q ss_pred CCCccHHHHHHHHHHhhCC
Q 033591 5 NSGVVFEDFFPAMVEKLGA 23 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~~~~ 23 (115)
++.++.+.|+.++...++.
T Consensus 28 ~~~l~~d~FLkLLvaQLqn 46 (81)
T PF03963_consen 28 NSSLDQDDFLKLLVAQLQN 46 (81)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 4578999999998877764
No 224
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=29.32 E-value=63 Score=19.27 Aligned_cols=45 Identities=11% Similarity=-0.049 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033591 25 GFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGD 75 (115)
Q Consensus 25 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d 75 (115)
.+.+.+..+...+..-+ ++..+...++.... -+..++..++...+
T Consensus 54 ~~~e~~~~l~~~L~~~~---L~~~E~~qi~Nl~P---~~~~El~~ii~~~~ 98 (117)
T PF03874_consen 54 QNPESIKELREELKKFG---LTEFEILQIINLRP---TTAVELRAIIESLE 98 (117)
T ss_dssp SSHHHHHHHHHHHTTST---S-HHHHHHHHHH-----SSHHHHHHHSTTGT
T ss_pred CCHHHHHHHHHHHhccc---CCHHHHHHHhcCCC---CCHHHHHHHHHHhc
Confidence 33455666666654222 66666666654432 45666666665543
No 225
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=29.32 E-value=64 Score=14.98 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=10.8
Q ss_pred ceeHHHHHHHHHhcC
Q 033591 44 LITFESLKKNSALLG 58 (115)
Q Consensus 44 ~i~~~el~~~l~~~~ 58 (115)
.++..+|+..|+..|
T Consensus 3 ~l~v~eLk~~l~~~g 17 (35)
T PF02037_consen 3 KLTVAELKEELKERG 17 (35)
T ss_dssp TSHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHCC
Confidence 356677888888777
No 226
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=29.18 E-value=1.4e+02 Score=18.04 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 48 ESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 48 ~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
+-+.+++.-+. ..++.+|-..+...++.-.+|.|++..-+.+++...
T Consensus 53 Nvl~Hi~Gyfk-~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~ 99 (117)
T PF08349_consen 53 NVLQHIFGYFK-KKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLA 99 (117)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 44666676676 778888777777777766788899888887776553
No 227
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=29.15 E-value=1.2e+02 Score=20.35 Aligned_cols=32 Identities=25% Similarity=0.154 Sum_probs=23.1
Q ss_pred eeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCC
Q 033591 45 ITFESLKKNSALLGLQDMSDEELMCMLREGDLDGD 79 (115)
Q Consensus 45 i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~ 79 (115)
-..+|+..+++..| +++++.+++.+.+..+.+
T Consensus 80 ~e~~el~~iy~~~G---l~~~~a~~i~~~l~~~~~ 111 (213)
T PF01988_consen 80 EEKEELVEIYRAKG---LSEEDAEEIAEELSKDKD 111 (213)
T ss_pred hHHHHHHHHHHHCC---CCHHHHHHHHHHHHhCch
Confidence 34457888888777 788888888877665544
No 228
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=29.06 E-value=1.1e+02 Score=17.22 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 48 ESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 48 ~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
..+..++.++| .+-+++.++..+..+....+-.+.
T Consensus 6 h~l~~LF~QLG-L~~~~~~I~~FI~~H~L~~~~~L~ 40 (74)
T PF10982_consen 6 HTLSNLFAQLG-LDSSDEAIEAFIETHQLPADVHLA 40 (74)
T ss_dssp THHHHHHHHHT-S---HHHHHHHHHHS---TTS-ST
T ss_pred CCHHHHHHHhC-CCCCHHHHHHHHHhCCCCCCCccc
Confidence 45788899999 888899999999887765554443
No 229
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=28.91 E-value=1e+02 Score=16.56 Aligned_cols=34 Identities=18% Similarity=0.396 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHH
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCM 70 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~ 70 (115)
-..+|.+| .++.|.|+..++...| | +++..+..+
T Consensus 9 rdkA~e~y-~~~~g~i~lkdIA~~L---g---vs~~tIr~W 42 (60)
T PF10668_consen 9 RDKAFEIY-KESNGKIKLKDIAEKL---G---VSESTIRKW 42 (60)
T ss_pred HHHHHHHH-HHhCCCccHHHHHHHH---C---CCHHHHHHH
Confidence 34455555 4688899976666544 6 666666654
No 230
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=27.98 E-value=1.5e+02 Score=18.14 Aligned_cols=48 Identities=27% Similarity=0.219 Sum_probs=32.9
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
-++.+...--..+...|++..+..+++ .++|+..+++.....+.|-++
T Consensus 58 IlelA~n~ak~~k~krItp~hi~lAi~-------nD~EL~~L~~~vtI~~ggv~p 105 (115)
T cd00074 58 VLELAGNAARDNKKKRITPRHLQLAVR-------NDEELNKLLKGVTIASGGVLP 105 (115)
T ss_pred HHHHHHHHHHHcCCCeEcHHHHHHHHh-------ccHHHHHHHcCCcccCCccCC
Confidence 445555555456678899998877663 457888899876666666554
No 231
>PTZ00017 histone H2A; Provisional
Probab=27.84 E-value=1.6e+02 Score=18.57 Aligned_cols=62 Identities=26% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 033591 12 DFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNE 84 (115)
Q Consensus 12 eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~ 84 (115)
.|+.++...+.. +-++.+...--.++...|++..+..++ -.++|+..++......+.|-++.
T Consensus 52 VYLAAVLEYLta----EILELAgNaa~d~kk~RItPrHi~lAI-------~nDeEL~~Ll~~vtIa~GGV~P~ 113 (134)
T PTZ00017 52 VYLAAVLEYLTA----EVLELAGNAAKDNKKKRITPRHIQLAI-------RNDEELNKLLAGVTIASGGVLPN 113 (134)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHhcCCCeecHHHHHhhc-------cCcHHHHHHHcCCcccCCccCCC
Confidence 455554444322 345555555545667789988877665 25678999998877777776654
No 232
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=27.22 E-value=64 Score=26.50 Aligned_cols=53 Identities=11% Similarity=0.025 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcc
Q 033591 29 ELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGAL 82 (115)
Q Consensus 29 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I 82 (115)
.+-+....||+..+|.|..-+|+-.+-.+. ....++.+.-+|+.+...+...+
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~ 523 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD 523 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH
Confidence 456788999999999999999988887777 67778888888888766554443
No 233
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=1.7e+02 Score=18.53 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCCccHHHHHHHHHHhhCCcCh--HHHH-HHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 5 NSGVVFEDFFPAMVEKLGAEGF--MQEL-SNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 5 ~~~i~~~eFl~~~~~~~~~~~~--~~~~-~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
...++.++|+.-++...+...+ .+.+ ..+|+.+. ..|+.+++.++...+.
T Consensus 73 ~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~----r~Is~gei~~v~s~Lp 125 (135)
T COG5502 73 KLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLK----RHISPGEIDKVRSRLP 125 (135)
T ss_pred CCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH----HhCCHHHHHHHHHHCc
Confidence 4467788888776655443221 2333 36677663 3566777777665554
No 234
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.08 E-value=1.6e+02 Score=18.33 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 033591 30 LSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLRE 73 (115)
Q Consensus 30 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~ 73 (115)
-..++..+-....+.+|.+++...++.-+ ..++...+.+.++.
T Consensus 19 R~~Il~~l~~~~~~h~sa~eI~~~l~~~~-~~i~~aTVYR~L~~ 61 (148)
T PRK09462 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQ 61 (148)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHH
Confidence 34445555434567899999999999888 77888877776654
No 235
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=26.61 E-value=22 Score=23.72 Aligned_cols=63 Identities=6% Similarity=0.058 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc----CCCCCCcccHHHHHHHH
Q 033591 27 MQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG----DLDGDGALNEMEFCTLM 91 (115)
Q Consensus 27 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~----d~~~~g~I~~~eF~~~l 91 (115)
.+.++.+|.-||+..=-..+.+++.+++..-+ .--....+..++.+. ..... .-++.+|+-..
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~-IIRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW~f 119 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAG-IIRHRGKIQAIIGNARAYLQMEQN-GEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch-hHHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhc
Confidence 46799999999998888888899998887655 333455555554421 11111 23677777443
No 236
>COG5562 Phage envelope protein [General function prediction only]
Probab=26.55 E-value=41 Score=21.27 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=10.7
Q ss_pred CCCCccHHHHHHHHHH
Q 033591 4 ANSGVVFEDFFPAMVE 19 (115)
Q Consensus 4 ~~~~i~~~eFl~~~~~ 19 (115)
..|..||++|+..++.
T Consensus 85 qsGqttF~ef~~~la~ 100 (137)
T COG5562 85 QSGQTTFEEFCSALAE 100 (137)
T ss_pred hcCCccHHHHHHHHHh
Confidence 3567777777776653
No 237
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=26.47 E-value=1.5e+02 Score=17.73 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC---CCCCcccHHHHHHHHHh
Q 033591 28 QELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDL---DGDGALNEMEFCTLMFR 93 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~---~~~g~I~~~eF~~~l~~ 93 (115)
..++.-|..+-. +|+++...|.+.+ | .+-+.+-+.++|..+-. -..+.|+.+|...+...
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---G-M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---G-MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---C-CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 466777777755 9999999999877 5 44467777777654311 12467888877766543
No 238
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=26.43 E-value=1.2e+02 Score=19.28 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=23.5
Q ss_pred eeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 033591 45 ITFESLKKNSALLGLQDMSDEELMCMLREGDL 76 (115)
Q Consensus 45 i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~ 76 (115)
.|.+++..+...+. .++|++|+..+++.++.
T Consensus 27 WT~eDV~~~a~gme-~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGME-YNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCC-CCCCHHHHHHHHHHHhc
Confidence 45778888777666 67889999888887654
No 239
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=26.09 E-value=1.4e+02 Score=17.50 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=20.7
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
.|+.++++++.+... ..+++++++.+...+
T Consensus 2 ~i~~e~v~~la~Lar-L~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLAR-LELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhh-cccCHHHHHHHHHHH
Confidence 467778887776666 667888777665443
No 240
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=25.85 E-value=1.6e+02 Score=17.62 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=33.9
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 033591 40 EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLM 91 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l 91 (115)
+..-.||.+++..+++..| ..+....+..+.+.+.. .+..+++...
T Consensus 13 d~~~~~Tae~I~~ilkAaG-veve~~~~~~f~~~L~g-----k~i~elIa~~ 58 (103)
T cd05831 13 DDGIEITADNINALLKAAG-VNVEPYWPGLFAKALEG-----KDIKDLLSNV 58 (103)
T ss_pred cCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcC-----CCHHHHhhcc
Confidence 3455799999999999999 88888777777766632 4566666543
No 241
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=25.54 E-value=2.1e+02 Score=18.95 Aligned_cols=48 Identities=33% Similarity=0.358 Sum_probs=30.4
Q ss_pred cCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHH---HHhcCCCCCCcccHHHHHH
Q 033591 38 MDEDKGLITFESLKKNSALLGLQDMSDEELMCM---LREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 38 D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~---~~~~d~~~~g~I~~~eF~~ 89 (115)
.-|.+|+++ ..+..+...++ ++.+++.++ ++.+++-|=|.=+..|.+.
T Consensus 44 ~LD~~GyL~-~~~~eia~~l~---~~~~~v~~~l~~lQ~leP~GigAr~l~EcLl 94 (194)
T PF04963_consen 44 NLDDDGYLT-ESLEEIAEELG---VSEEEVEKALELLQSLEPAGIGARDLQECLL 94 (194)
T ss_dssp CBTTTSTCS-S-HHHHHHHCT---S-HHHHHHHHHHHHTTSS--TTTS-TTHHHH
T ss_pred cCCCCCccC-CCHHHHHHHhC---CCHHHHHHHHHHHHcCCCCccCcCCHHHHHH
Confidence 357889988 44566677777 777777665 5568888888877777544
No 242
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=25.48 E-value=84 Score=14.43 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=11.2
Q ss_pred ceeHHHHHHHHHhcC
Q 033591 44 LITFESLKKNSALLG 58 (115)
Q Consensus 44 ~i~~~el~~~l~~~~ 58 (115)
.++..+|+..++..|
T Consensus 3 ~l~~~~Lk~~l~~~g 17 (35)
T smart00513 3 KLKVSELKDELKKRG 17 (35)
T ss_pred cCcHHHHHHHHHHcC
Confidence 456777888888777
No 243
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.18 E-value=2.6e+02 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=14.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 50 LKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 50 l~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
+.++|+-.. ++++.+.+..++.++
T Consensus 105 ~a~Ac~~iA-~k~~~~~l~dfL~Rl 128 (527)
T COG1955 105 LAEACRFIA-KKTPSEILADFLDRL 128 (527)
T ss_pred hHHHHHHHH-hhCcHHHHHHHHHHH
Confidence 455565555 666666666665543
No 244
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=24.96 E-value=1.5e+02 Score=20.82 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=36.1
Q ss_pred CceeHHHHHHHHHh-----cCCCCCCHHHHHHHHHh----cCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHHhc
Q 033591 43 GLITFESLKKNSAL-----LGLQDMSDEELMCMLRE----GDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEALN 111 (115)
Q Consensus 43 g~i~~~el~~~l~~-----~~~~~~~~~e~~~~~~~----~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 111 (115)
..++-.+|.++|.. .| .+++++.+.-+-.. -....+..|+|..|++- ..++..=.-=.|++.+++
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~-R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke---~lp~~~ftFW~Wf~~ile 250 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETG-RGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE---NLPGRNFTFWEWFDGILE 250 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS---B-TTSSSBHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc---cCCCCCCchHHHHHHHHH
Confidence 45778889888775 57 88999988665442 22235678999999643 122211123567776654
No 245
>PRK03430 hypothetical protein; Validated
Probab=24.87 E-value=2e+02 Score=18.69 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHHhh-cCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHH
Q 033591 30 LSNGFRLL-MDEDKGLITFESLKKNSALLGLQDMSDEELMCML 71 (115)
Q Consensus 30 ~~~~F~~~-D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~ 71 (115)
+.-+|..| ..+.+-.++.++|..-|...| ..++++.+.+
T Consensus 5 L~YLFEnY~~~d~~~~pd~~~L~~~L~~aG---F~~~eI~~AL 44 (157)
T PRK03430 5 LMYLFETYIHNEAELRVDQDKLEDDLTDAG---FHREDIYNAL 44 (157)
T ss_pred hhHHHHHhhccccccCCCHHHHHHHHHHcC---CCHHHHHHHH
Confidence 34456643 446677888899999999888 7777776654
No 246
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=24.19 E-value=1.3e+02 Score=18.21 Aligned_cols=12 Identities=17% Similarity=0.146 Sum_probs=5.9
Q ss_pred CHHHHHHHHHhc
Q 033591 63 SDEELMCMLREG 74 (115)
Q Consensus 63 ~~~e~~~~~~~~ 74 (115)
+.+++..++...
T Consensus 84 s~~E~~~lI~sl 95 (118)
T smart00657 84 TAEEAQLLIPSL 95 (118)
T ss_pred CHHHHHHHhhhh
Confidence 444555555444
No 247
>PLN00157 histone H2A; Provisional
Probab=24.15 E-value=2e+02 Score=18.19 Aligned_cols=63 Identities=24% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 033591 11 EDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNE 84 (115)
Q Consensus 11 ~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~ 84 (115)
..|++++...+.. +.++.+-..--.++...|++.-+..++ -.++|+.++++.....+.|-++.
T Consensus 50 ~VYLAAVLEYLta----EVLELAgnaa~d~kk~RItPrHi~lAI-------~nDeEL~~Ll~~vtIa~GGV~P~ 112 (132)
T PLN00157 50 PVYLAAVLEYLAA----EVLELAGNAARDNKKSRIVPRHIQLAV-------RNDEELSKLLGGVTIAAGGVLPN 112 (132)
T ss_pred HhHHHHHHHHHHH----HHHHHHHHHHHhcCCccccHHHHhhcc-------cCcHHHHHHHcCceecCCccCCC
Confidence 3455555444322 344555555445566788887766544 25678999998877766676554
No 248
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=23.63 E-value=98 Score=16.45 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCCCCCc----eeHHHHHHHHHhcCCCCCCHHHHHHHH
Q 033591 28 QELSNGFRLLMDEDKGL----ITFESLKKNSALLGLQDMSDEELMCML 71 (115)
Q Consensus 28 ~~~~~~F~~~D~~~~g~----i~~~el~~~l~~~~~~~~~~~e~~~~~ 71 (115)
+.++..|. ..|+ ++..+..+++..+| +++..+.-+|
T Consensus 14 ~~Le~~fe-----~~~y~~~~~~~~~r~~la~~lg---l~~~vvKVWf 53 (58)
T TIGR01565 14 EKMRDFAE-----KLGWKLKDKRREEVREFCEEIG---VTRKVFKVWM 53 (58)
T ss_pred HHHHHHHH-----HcCCCCCCCCHHHHHHHHHHhC---CCHHHeeeec
Confidence 34555555 3556 77778888888888 6666555444
No 249
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=23.42 E-value=1.3e+02 Score=15.80 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 48 ESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 48 ~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
.|+..+.+.+| +|++++...+..+
T Consensus 21 ~ev~ywa~~~g---vt~~~L~~AV~~v 44 (57)
T PF12244_consen 21 YEVRYWAKRFG---VTEEQLREAVRAV 44 (57)
T ss_pred HHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 34555666666 5666666665554
No 250
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=23.14 E-value=1.6e+02 Score=16.67 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=23.4
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHHhc
Q 033591 63 SDEELMCMLREGDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEALN 111 (115)
Q Consensus 63 ~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 111 (115)
.+++++-+++.. .||+.+|+-+ ++.+.++|+.=..|++..+|
T Consensus 15 ~~~eIe~LL~~A------kiSl~DyImi-KRGS~DmPe~l~~~~~~Qid 56 (79)
T PF10398_consen 15 AQEEIEILLKIA------KISLVDYIMI-KRGSQDMPEHLNMAFLAQID 56 (79)
T ss_dssp HHHHHHHHHHHH------T--HHHHHHH-HTTSS---TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHh------hccHHHHHHh-cccCCcCcccccHHHHHHHH
Confidence 356666666654 3788888754 66677788776777766554
No 251
>PLN00156 histone H2AX; Provisional
Probab=23.08 E-value=2.1e+02 Score=18.21 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccH
Q 033591 11 EDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNE 84 (115)
Q Consensus 11 ~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~ 84 (115)
..|++++...+.. +.++.+-..--.++...|++.-+..++ -.++|+.++++.....+.|-++.
T Consensus 53 pVYLAAVLEYLta----EVLELAgNaa~d~kk~RItPrHi~lAI-------rnDeEL~~Ll~~vTIa~GGV~P~ 115 (139)
T PLN00156 53 PVYLSAVLEYLAA----EVLELAGNAARDNKKNRIVPRHIQLAV-------RNDEELSKLLGSVTIAAGGVLPN 115 (139)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHcCCCcCcHHHHHhhc-------cCcHHHHHHHCCCccCCCccCCC
Confidence 3456655544432 344555555445566788888776555 25688999998877777776654
No 252
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=22.66 E-value=1.3e+02 Score=16.01 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=10.7
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 33 GFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 33 ~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+++.+..+...=++.++..+-.+..|
T Consensus 9 v~~~l~t~~~~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 9 VLKRLNTSSSQGLSSEEVEERRKKYG 34 (69)
T ss_dssp HHHHHTTBTSSBBTHHHHHHHHHHHS
T ss_pred HHHHHCcCCCCCCCHHHHHHHHHhcc
Confidence 33344333333344444444444444
No 253
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=22.54 E-value=1.9e+02 Score=17.38 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=32.5
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTL 90 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~ 90 (115)
.||.+.+..+++..| ..+.+..+..+...+.. .+.++.+.-
T Consensus 16 ~iT~e~I~~IL~AAG-v~ve~~~~~~la~~L~g-----k~i~eli~~ 56 (105)
T TIGR03685 16 EINEENLKAVLEAAG-VEVDEARVKALVAALEG-----VNIEEAIKK 56 (105)
T ss_pred CCCHHHHHHHHHHhC-CcccHHHHHHHHHHHcC-----CCHHHHHHh
Confidence 799999999999999 88888888888877743 455565543
No 254
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.35 E-value=1.7e+02 Score=17.13 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhcCC
Q 033591 48 ESLKKNSALLGLQDMSDEELMCMLREGDL 76 (115)
Q Consensus 48 ~el~~~l~~~~~~~~~~~e~~~~~~~~d~ 76 (115)
++++..|.++| ++++++.+.-+.++.
T Consensus 71 d~~~~~l~~lG---l~~~ea~~y~~~l~~ 96 (103)
T PF11181_consen 71 DELRSKLESLG---LSEDEAERYEEELDQ 96 (103)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHC
Confidence 46888888888 888888887777653
No 255
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=22.29 E-value=1.6e+02 Score=21.89 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033591 31 SNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 31 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~ 92 (115)
......+|+.+.|.++.-..+.++..+. ...-.+++.-++.... +.+|-+.+..|..+++
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 3345567899999999888888888765 4344566666666654 4567655544444443
No 256
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=22.18 E-value=1.5e+02 Score=16.81 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=7.2
Q ss_pred ccHHHHHHHHHHhh
Q 033591 8 VVFEDFFPAMVEKL 21 (115)
Q Consensus 8 i~~~eFl~~~~~~~ 21 (115)
+|+++.+..+...+
T Consensus 42 ~t~eemie~~~~~~ 55 (81)
T PF12674_consen 42 ITMEEMIEFCVPFM 55 (81)
T ss_pred CCHHHHHHHHHHHH
Confidence 45555555554443
No 257
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=2.5e+02 Score=18.56 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=35.2
Q ss_pred HhhcCCCCCceeHHHHHHHHHh----------cCCCCCCHHHHHHHHH-hcCCCCCCcccHHHHHHHHHhhC
Q 033591 35 RLLMDEDKGLITFESLKKNSAL----------LGLQDMSDEELMCMLR-EGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 35 ~~~D~~~~g~i~~~el~~~l~~----------~~~~~~~~~e~~~~~~-~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
++|+...+-+||.+++..++.. .| ..++..-+.+++- .-..++..-++. .|+..+-+.+
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsg-eDiT~sVLtQIIfEeE~k~G~~llpi-~fLrQlI~fY 88 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSG-EDITHSVLTQIIFEEENKGGQNLLPI-SFLRQLISFY 88 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeecccc-chhhHHHHHHHHHHHhccCCCccccH-HHHHHHHHHH
Confidence 4567777889999999988875 24 4566666666543 333344433443 3554444443
No 258
>smart00414 H2A Histone 2A.
Probab=21.75 E-value=2e+02 Score=17.33 Aligned_cols=61 Identities=28% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCCCCCccc
Q 033591 12 DFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALN 83 (115)
Q Consensus 12 eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d~~~~g~I~ 83 (115)
.|+.++...+.. +-++.+...--.++...|++..+..++. .++|+..+++.....+.|-++
T Consensus 34 VyLaAvLEYLta----EILeLagn~a~~~k~~rItp~hi~lAi~-------nD~EL~~L~~~vti~~ggv~p 94 (106)
T smart00414 34 VYLAAVLEYLTA----EVLELAGNAARDNKKRRITPRHLQLAIR-------NDEELNKLLKGVTIAQGGVLP 94 (106)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhcCCCccchHHHhhhcc-------CCHHHHHHHcCcccCCCccCC
Confidence 455555444322 3344444444345666788888776552 467888899887666666655
No 259
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=21.27 E-value=2.7e+02 Score=18.67 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=20.2
Q ss_pred CceeHHHHHHHHHhcCC----CCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q 033591 43 GLITFESLKKNSALLGL----QDMSDEELMCMLREGDLDGDGALNEMEFCT 89 (115)
Q Consensus 43 g~i~~~el~~~l~~~~~----~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~ 89 (115)
..-....+.+++..++- ..++++++++++..++ -.|.+|..
T Consensus 141 dfe~r~kl~~Wl~~Ln~m~asdeL~e~q~rqllfDle------~aY~~F~~ 185 (188)
T PF03997_consen 141 DFEGRSKLVEWLIKLNGMKASDELSEEQARQLLFDLE------SAYNAFYR 185 (188)
T ss_dssp T-CCHHHHHHHHHHHHTS-TT-B--HHHHHHHHHHHH------HHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHH------HHHHHHHH
Confidence 34445556666665420 3456677777665544 34555544
No 260
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=21.21 E-value=2e+02 Score=19.78 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=23.0
Q ss_pred eHHHHHHHHH----hcCCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 033591 46 TFESLKKNSA----LLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMF 92 (115)
Q Consensus 46 ~~~el~~~l~----~~~~~~~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~ 92 (115)
+.++++.++. .++ ..+++++++.+...+..=.+-.+++.+|...+.
T Consensus 173 t~~eI~~IV~~~~~~~~-i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYN-INLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455444333 345 556666666655444333334455566655543
No 261
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=21.19 E-value=2.3e+02 Score=18.58 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=22.2
Q ss_pred cCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHHh
Q 033591 74 GDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEAL 110 (115)
Q Consensus 74 ~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~ 110 (115)
+.++...++++.+|++.++....+ ..-+.+++.+++
T Consensus 142 Hn~~~~~kmt~~~Fi~~~~~~~~~-~~~~~~~L~~iY 177 (185)
T cd00171 142 HNPNVKKKMTLEDFIKNLRGINDG-EDFPREFLKELY 177 (185)
T ss_pred cCcccCCCCCHHHHHHHHhcccCC-CCCCHHHHHHHH
Confidence 344445678999999998876543 123345555544
No 262
>PLN02230 phosphoinositide phospholipase C 4
Probab=21.15 E-value=2.6e+02 Score=22.39 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=19.8
Q ss_pred CHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 63 SDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 63 ~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
++.++..+|..+..++ +.++.++|..+|....
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4566677776664333 5677777777666544
No 263
>PF15601 Imm42: Immunity protein 42
Probab=21.05 E-value=2.3e+02 Score=17.88 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcC
Q 033591 10 FEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLG 58 (115)
Q Consensus 10 ~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 58 (115)
+..|...++..+.......++-.+-..+ =+|++..+++..+++.+.
T Consensus 18 l~sFFsti~~~lE~~~wGskfP~Lm~~L---Y~g~L~~~~~~~A~~eL~ 63 (134)
T PF15601_consen 18 LHSFFSTISYRLENEGWGSKFPLLMNEL---YRGYLRYEELEKALKELE 63 (134)
T ss_pred HHHHHHHHHHHhhccCCCCcchHHHHHH---HcCCCCHHHHHHHHHHHH
Confidence 4456666665554333322333333332 468899888888777653
No 264
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=20.80 E-value=74 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 26 FMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 26 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
+..++..+++.+-..+...++..+|.+.|. +| ..++++++...+..+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VG-V~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG-VG-VVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT-----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CC-eEECHHHHHHHHHHH
Confidence 446788888888655666788888887663 46 678899988877654
No 265
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.76 E-value=1.8e+02 Score=16.50 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=16.1
Q ss_pred ceeHHHHHHHHHhcCCCCCCHHHHHHHH
Q 033591 44 LITFESLKKNSALLGLQDMSDEELMCML 71 (115)
Q Consensus 44 ~i~~~el~~~l~~~~~~~~~~~e~~~~~ 71 (115)
.++....+...+.+| +++.+++.+-
T Consensus 8 ~v~~~~wk~~~R~LG---lse~~Id~ie 32 (80)
T cd08313 8 EVPPRRWKEFVRRLG---LSDNEIERVE 32 (80)
T ss_pred hCCHHHHHHHHHHcC---CCHHHHHHHH
Confidence 455666777777777 6666665553
No 266
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.75 E-value=2e+02 Score=17.04 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=22.9
Q ss_pred CceeHHHHHHHHHhcCCCCCCHHHHHHHHHhc
Q 033591 43 GLITFESLKKNSALLGLQDMSDEELMCMLREG 74 (115)
Q Consensus 43 g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~ 74 (115)
+.+|.+++...++.-+ ..++..-+.+.++.+
T Consensus 22 ~~~ta~ei~~~l~~~~-~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 22 EHLTAEEIYDKLRKKG-PRISLATVYRTLDLL 52 (120)
T ss_dssp SSEEHHHHHHHHHHTT-TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcc-CCcCHHHHHHHHHHH
Confidence 3899999999999888 778888777766543
No 267
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.75 E-value=3.7e+02 Score=20.16 Aligned_cols=12 Identities=25% Similarity=0.221 Sum_probs=5.2
Q ss_pred cHHHHHHHHHhh
Q 033591 83 NEMEFCTLMFRL 94 (115)
Q Consensus 83 ~~~eF~~~l~~~ 94 (115)
-|.||+..|..+
T Consensus 44 ~FNeFi~tma~I 55 (379)
T PF11593_consen 44 QFNEFIQTMANI 55 (379)
T ss_pred HHHHHHHHHHHh
Confidence 344444444433
No 268
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.74 E-value=65 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=6.2
Q ss_pred CHHHHHHHHHhcC
Q 033591 63 SDEELMCMLREGD 75 (115)
Q Consensus 63 ~~~e~~~~~~~~d 75 (115)
+++++-.+++.+.
T Consensus 46 T~EEAlEii~yle 58 (98)
T COG4003 46 TEEEALEIINYLE 58 (98)
T ss_pred cHHHHHHHHHHHH
Confidence 4444444554443
No 269
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=20.62 E-value=2e+02 Score=17.06 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=24.1
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHH
Q 033591 39 DEDKGLITFESLKKNSALLGLQDMSDEELMCML 71 (115)
Q Consensus 39 ~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~ 71 (115)
...+|.++..+++.+....| ++..++..++
T Consensus 59 ~~~~~~~~~~~i~~~r~~~g---ltq~~lA~~l 88 (127)
T TIGR03830 59 RKVDGLLTPPEIRRIRKKLG---LSQREAAELL 88 (127)
T ss_pred HHccCCcCHHHHHHHHHHcC---CCHHHHHHHh
Confidence 46778899999998888877 7888877766
No 270
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=20.48 E-value=2.1e+02 Score=18.75 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=24.1
Q ss_pred cCCCCCCcccHHHHHHHHHhhCcccccchhHHHHHHhc
Q 033591 74 GDLDGDGALNEMEFCTLMFRLSPGLMKNSTNLFLEALN 111 (115)
Q Consensus 74 ~d~~~~g~I~~~eF~~~l~~~~~~~~~~~~~~~~~~~~ 111 (115)
+.++...++++++|++.++....+ ..-+..|+.++++
T Consensus 144 hn~~~k~kmt~~~Fi~~~~~~~~~-~~~~~~~L~~iY~ 180 (187)
T smart00222 144 HNPNVKKKMTLEDFIKNVRGSNDG-EDLPREFLEELYD 180 (187)
T ss_pred cCCccCCCCCHHHHHHHHhccCCC-CCCCHHHHHHHHH
Confidence 344445678999999999876433 2344567766554
No 271
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=20.33 E-value=2.4e+02 Score=17.82 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033591 40 EDKGLITFESLKKNSALLGLQDMSDEELMCMLREGD 75 (115)
Q Consensus 40 ~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d 75 (115)
..+...|.+|+...++..| ..++...+-+.++.+.
T Consensus 12 ~~~~i~tqeeL~~~L~~~G-~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEG-IEVTQATVSRDLRELG 46 (146)
T ss_pred HcCCCCCHHHHHHHHHHhC-CCcCHHHHHHHHHHcC
Confidence 3556778899999999989 8889998888887653
No 272
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=20.32 E-value=4.1e+02 Score=20.47 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCccHHHHHHHHHHhhCCcChHHHHHHHHHhhcCCCCCceeHHHHHHHHHhcCCCCCCHHHHHHH---HHhcCCCCCCcc
Q 033591 6 SGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCM---LREGDLDGDGAL 82 (115)
Q Consensus 6 ~~i~~~eFl~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~---~~~~d~~~~g~I 82 (115)
++-|+.+++..-......... +.....+-+---|.+|+++.+ +..+...++ . ++.+++.++ ++.+++-|-|.=
T Consensus 88 ~~~tL~e~L~~Ql~~~~~s~~-e~~Ia~~lI~~Ldd~GYl~~~-le~~~~~l~-~-~~~~eve~vl~~iQ~ldP~GV~Ar 163 (444)
T COG1508 88 ATKTLSEYLLEQLRLLPLSDT-ERAIATYLIDALDDEGYLTES-LEEIAELLG-S-VDEEEVEKVLARIQSLDPAGVGAR 163 (444)
T ss_pred cccCHHHHHHHHHhhcCCChH-HHHHHHHHHhhcCcCCCcccC-HHHHHHhcc-c-ccHHHHHHHHHHHhcCCCCccccC
Confidence 345777777653333222222 222222222224788998866 666666666 3 677777776 456899888888
Q ss_pred cHHHHHHHHHhh
Q 033591 83 NEMEFCTLMFRL 94 (115)
Q Consensus 83 ~~~eF~~~l~~~ 94 (115)
++.|++.+-...
T Consensus 164 ~l~EcL~lQL~~ 175 (444)
T COG1508 164 DLRECLLLQLER 175 (444)
T ss_pred cHHHHHHHHHHh
Confidence 888877654433
No 273
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=20.18 E-value=2.4e+02 Score=19.34 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=30.8
Q ss_pred CCCCCceeHHHHHHHHHhcCCCCCCHHHHHHHHHhcC
Q 033591 39 DEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGD 75 (115)
Q Consensus 39 ~~~~g~i~~~el~~~l~~~~~~~~~~~e~~~~~~~~d 75 (115)
.|.+|+...+++...++..+ ..++.+-+..+.+.-+
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~-~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAG-RWLTRELLLAVVATDD 89 (211)
T ss_pred eccccchhHHHHHHHHHhhc-cCCCHHHHHHHHhcCC
Confidence 57899999999999999999 9999998887776543
No 274
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=20.06 E-value=54 Score=18.94 Aligned_cols=8 Identities=25% Similarity=0.119 Sum_probs=3.2
Q ss_pred CCceeHHH
Q 033591 42 KGLITFES 49 (115)
Q Consensus 42 ~g~i~~~e 49 (115)
+|.++..|
T Consensus 16 DG~v~~~E 23 (111)
T cd07176 16 DGDIDDAE 23 (111)
T ss_pred ccCCCHHH
Confidence 33444333
No 275
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=20.03 E-value=1.1e+02 Score=17.53 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHhhC
Q 033591 62 MSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 95 (115)
Q Consensus 62 ~~~~e~~~~~~~~d~~~~g~I~~~eF~~~l~~~~ 95 (115)
+++.|...+-..++.-..|.|+.+.|+..+....
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~elL 49 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFELL 49 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4666666666555555677888888887776543
Done!