BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033593
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|F Chain F, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 153
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL+F+V G ENEL+L TVL FD++ +LR
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLR 106
>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop
Length = 149
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL+F+V G ENEL+L VL FD++ +LR
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
>pdb|3C1B|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|D Chain D, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|H Chain H, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 125
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 33 SAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVL 92
+AK+ +KAV TKTQK + + + + VYK ++ +H TG + I+ + +
Sbjct: 9 AAKKGSKKAV-TKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPD-TGISSKAMSIMNSFV 66
Query: 93 QGFFDAV-GLLLRLLHY 108
F+ + G RL HY
Sbjct: 67 NDVFERIAGEASRLAHY 83
>pdb|1ZLA|D Chain D, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|H Chain H, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 125
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 33 SAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVL 92
+AK+ +KAV TKTQK + + + + VYK ++ +H TG + I+ + +
Sbjct: 9 AAKKGSKKAV-TKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPD-TGISSKAMSIMNSFV 66
Query: 93 QGFFDAV-GLLLRLLHY 108
F+ + G RL HY
Sbjct: 67 NDVFERIAGEASRLAHY 83
>pdb|1KX3|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|D Chain D, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|H Chain H, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|D Chain D, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|H Chain H, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1M18|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|D Chain D, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|H Chain H, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1ZBB|D Chain D, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|H Chain H, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|DD Chain d, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|HH Chain h, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|D Chain D, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|H Chain H, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|D Chain D, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|H Chain H, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|D Chain D, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|H Chain H, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|D Chain D, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|H Chain H, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3KUY|D Chain D, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|H Chain H, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LEL|D Chain D, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|H Chain H, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|N Chain N, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|R Chain R, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3MGP|D Chain D, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|H Chain H, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|D Chain D, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|H Chain H, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|D Chain D, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|H Chain H, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|D Chain D, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|H Chain H, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|D Chain D, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|H Chain H, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|D Chain D, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|H Chain H, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3UT9|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|D Chain D, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|H Chain H, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 125
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 30 PTNSA---KEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL 86
P SA K+ +KAV TKTQK + + + + VYK ++ +H TG +
Sbjct: 3 PAKSAPAPKKGSKKAV-TKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPD-TGISSKAMS 60
Query: 87 ILATVLQGFFDAV-GLLLRLLHY 108
I+ + + F+ + G RL HY
Sbjct: 61 IMNSFVNDVFERIAGEASRLAHY 83
>pdb|1F66|D Chain D, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|H Chain H, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 126
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 30 PTNSA---KEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL 86
P SA K+ +KAV TKTQK + + + + VYK ++ +H TG +
Sbjct: 4 PAKSAPAPKKGSKKAV-TKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPD-TGISSKAMS 61
Query: 87 ILATVLQGFFDAV-GLLLRLLHY 108
I+ + + F+ + G RL HY
Sbjct: 62 IMNSFVNDVFERIAGEASRLAHY 84
>pdb|3C9K|B Chain B, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|F Chain F, Model Of Histone Octamer Tubular Crystals
Length = 125
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 30 PTNSA---KEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL 86
P SA K+ +KAV TKTQK + ++ VYK ++ +H TG +
Sbjct: 3 PAKSAPAPKKGSKKAV-TKTQKKGDKKRKRARKESYSIYVYKVLKQVHPD-TGISSKAMS 60
Query: 87 ILATVLQGFFDAV-GLLLRLLHY 108
I+ + + F+ + G RL HY
Sbjct: 61 IMNSFVNDIFERIAGEASRLAHY 83
>pdb|1P34|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|D Chain D, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|H Chain H, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 125
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 30 PTNSA---KEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL 86
P SA K+ +KAV TKTQK + + + + VYK ++ +H TG +
Sbjct: 3 PAKSAPAPKKGSKKAV-TKTQKKDGKKRRKSRKESYAIYVYKVLKQVHPD-TGISSKAMS 60
Query: 87 ILATVLQGFFDAV-GLLLRLLHY 108
I+ + + F+ + G RL HY
Sbjct: 61 IMNSFVNDVFERIAGEASRLAHY 83
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 14 DSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQK 48
D+EG+ + Y++N W K + +V +K K
Sbjct: 255 DAEGRAIQAVYWANKWAKEQGKGSAVASVVSKAAK 289
>pdb|1S32|D Chain D, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|H Chain H, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|3LJA|D Chain D, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|H Chain H, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|D Chain D, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|H Chain H, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|D Chain D, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|H Chain H, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3O62|D Chain D, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|H Chain H, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3TU4|D Chain D, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|H Chain H, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|D Chain D, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|H Chain H, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|D Chain D, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|H Chain H, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|D Chain D, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|H Chain H, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|D Chain D, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|H Chain H, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|D Chain D, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|H Chain H, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
Length = 122
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 35 KEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQG 94
K+ +KAV TKTQK + + + + VYK ++ +H TG + I+ + +
Sbjct: 8 KKGSKKAV-TKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPD-TGISSKAMSIMNSFVND 65
Query: 95 FFDAV-GLLLRLLHY 108
F+ + G RL HY
Sbjct: 66 VFERIAGEASRLAHY 80
>pdb|2F8N|H Chain H, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 123
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 35 KEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQG 94
K+ +KAV TKTQK + + + + VYK ++ +H TG + I+ + +
Sbjct: 9 KKGSKKAV-TKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPD-TGISSKAMSIMNSFVND 66
Query: 95 FFDAV-GLLLRLLHY 108
F+ + G RL HY
Sbjct: 67 VFERIAGEASRLAHY 81
>pdb|3T8S|A Chain A, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
pdb|3T8S|B Chain B, Apo And Insp3-Bound Crystal Structures Of The
Ligand-Binding Domain Of An Insp3 Receptor
Length = 585
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 66 VYKFVQDLHFFVTGGEDENELILATV 91
V K ++DL +FVTGG + + +L V
Sbjct: 456 VTKLLEDLVYFVTGGTNSGQDVLEVV 481
>pdb|3UJ0|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ0|B Chain B, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor With Ligand Bound Form.
pdb|3UJ4|A Chain A, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
pdb|3UJ4|B Chain B, Crystal Structure Of The Apo-Inositol 1,4,5-Trisphosphate
Receptor
Length = 604
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 66 VYKFVQDLHFFVTGGEDENELILATV 91
V K ++DL +FVTGG + + +L V
Sbjct: 473 VTKLLEDLVYFVTGGTNSGQDVLEVV 498
>pdb|1N4K|A Chain A, Crystal Structure Of The Inositol 1,4,5-Trisphosphate
Receptor Binding Core In Complex With Ip3
Length = 381
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 66 VYKFVQDLHFFVTGGEDENELILATV 91
V K ++DL +FVTGG + + +L V
Sbjct: 250 VTKLLEDLVYFVTGGTNSGQDVLEVV 275
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,014,036
Number of Sequences: 62578
Number of extensions: 103504
Number of successful extensions: 322
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 17
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)