BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033593
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2
SV=1
Length = 179
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/103 (81%), Positives = 95/103 (92%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+
Sbjct: 4 DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR
Sbjct: 64 SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLR 106
>sp|Q940S5|COPZ1_ARATH Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2
SV=1
Length = 177
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/104 (80%), Positives = 95/104 (91%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M+ P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+ L
Sbjct: 1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR
Sbjct: 61 ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLR 104
>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2
SV=1
Length = 181
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 94/103 (91%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct: 6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR
Sbjct: 66 SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLR 108
>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1
PE=2 SV=1
Length = 177
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 93/104 (89%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK A EAEI M
Sbjct: 1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
+G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR
Sbjct: 61 DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILR 104
>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2
PE=2 SV=1
Length = 182
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/103 (74%), Positives = 94/103 (91%)
Query: 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +
Sbjct: 7 ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66
Query: 62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLR
Sbjct: 67 GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLR 109
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/104 (73%), Positives = 94/104 (90%)
Query: 1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M
Sbjct: 1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMF 60
Query: 61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
+ +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+ LLR
Sbjct: 61 DSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLR 104
>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2
Length = 177
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL+F+V G ENEL+L TVL FD++ +LR
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLR 106
>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1
Length = 177
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL+F+V G ENEL+L VL FD++ +LR
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1
Length = 177
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL+F+V G ENEL+L VL FD++ +LR
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1
Length = 177
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +
Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL+F+V G ENEL+L VL FD++ +LR
Sbjct: 68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLR 106
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
+IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA L G I
Sbjct: 40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTI 95
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK D+ +V G ENEL+L +VL FD++ +LR
Sbjct: 96 VYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILR 134
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
+IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA G I
Sbjct: 45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTI 100
Query: 66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
VYK DL +V G ENEL+L +VL F+++ +LR
Sbjct: 101 VYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLR 139
>sp|O17901|COPZ_CAEEL Probable coatomer subunit zeta OS=Caenorhabditis elegans
GN=F59E10.3 PE=3 SV=1
Length = 184
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 8/108 (7%)
Query: 2 DTCP----SIKNILLLDSEGKRVAVKYYSND-WPTNSAKEAFEKAVFTKTQKTNARTEAE 56
DT P SIK I++LD +G RV KYY + T ++AFEK++F+KT + T A+
Sbjct: 5 DTNPTSLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN---TSAD 61
Query: 57 IAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
I +L+G +Y+ DL+F+V G ENEL L L +DAV ++LR
Sbjct: 62 ILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLR 109
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Query: 6 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNV 64
++ + +LDS +G+RV KYY+ND+ T ++AFEK VF KT K N EI +L+ +
Sbjct: 7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVNFG--GEITLLDNYL 64
Query: 65 IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV 99
+VYK ++ ++ G +++NE+ L VL F D +
Sbjct: 65 VVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTL 99
>sp|O74891|COPZ_SCHPO Probable coatomer subunit zeta OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ret3 PE=3 SV=1
Length = 190
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPT-------NSAKE--AFEKAVFTKTQKTNART 53
T ++ L+LDS GKR+ KYY+ NS KE FEK +F KT KT
Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT---- 59
Query: 54 EAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR 104
+ +I +G ++V V D+ F++ GG +ENE++L L+ DA+ LL +
Sbjct: 60 QNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFK 110
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPT--------NSAKEA--FEKAVFTKTQKTNARTEA 55
+++ +L+LD +G+R+ KYY + NS K+ FEK ++ KT K ++
Sbjct: 8 TVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQDS---- 63
Query: 56 EIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLL 103
EI + E ++++YK D+ ++ +ENE++L A+ L+L
Sbjct: 64 EILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLIL 111
>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyostelium discoideum
GN=copZb PE=3 SV=1
Length = 178
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 12/93 (12%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTN-----SAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
IK I++LD+ GKR+ +Y D P + K+ FEK +F K + +N E+ +++
Sbjct: 8 IKAIIVLDNNGKRLCSCFY--DPPGTPITPLTEKDKFEKLIFEKCKTSN----CELEIID 61
Query: 62 GNVIVYKFVQDLHFFVTGGE-DENELILATVLQ 93
V++ D+ FV G + NEL L VL
Sbjct: 62 NKVVIGSKQSDVWIFVVGNSLNSNELALLDVLN 94
>sp|O82201|AP4S_ARATH AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790
PE=2 SV=1
Length = 143
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN-- 63
I+ IL+++ +G+ +YY +W T + A E + +K AR + + + +E
Sbjct: 2 GIRFILMVNKQGQTRLAQYY--EWLTLEERRALEGEI---VRKCLARNDQQCSFVEHRNY 56
Query: 64 VIVYKFVQDLHFFVTGGEDENEL 86
IVY+ L F V +DENEL
Sbjct: 57 KIVYRRYASLFFMVGVDDDENEL 79
>sp|Q00729|H2B1A_RAT Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2
Length = 127
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 31 TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILAT 90
T +K+ F+KAV TKTQK R ++ +YK ++ +H TG + I+ +
Sbjct: 9 TTISKKGFKKAV-TKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPD-TGISSKAMSIMNS 66
Query: 91 VLQGFFDAV-GLLLRLLHY 108
+ F+ + G RL HY
Sbjct: 67 FVTDIFERIAGEASRLAHY 85
>sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860
PE=2 SV=1
Length = 166
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFT--KTQKTNARTEAEIAMLEG-- 62
IK +++++++GK K+Y D+ ++ + VF+ ++ N EI L G
Sbjct: 2 IKAVMMMNTQGKPRLAKFY--DYLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGPD 59
Query: 63 NVIVYKFVQDLHFFVTGGEDENELILATVLQ 93
+ +VYK L+F + ENEL + ++Q
Sbjct: 60 SRLVYKHYATLYFVLVFDGSENELAMLDLIQ 90
>sp|Q9P7N2|AP1S1_SCHPO AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=vas2 PE=1 SV=1
Length = 162
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
SIK LL+ +GK K+++ AK + + T+K E +G I
Sbjct: 2 SIKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVE---YKGEKI 58
Query: 66 VYKFVQDLHFFVTGGE-DENELILATVLQGFFDAV 99
VY+ L FFV G E D+NELI+ V+ F + +
Sbjct: 59 VYRRYASL-FFVCGIEQDDNELIILEVIHKFVECL 92
>sp|A4JCA3|SYS_BURVG Serine--tRNA ligase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=serS PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 13 LDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEA---EIAMLEG 62
LD KR+A + Y+ D SA EA +A+ T+T++ AR + +I ++G
Sbjct: 11 LDGVAKRLADRGYTLDVAAFSALEAERRAIQTRTEELQARRNSLSKQIGAMKG 63
>sp|Q2SY90|SYS_BURTA Serine--tRNA ligase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=serS PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 13 LDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEA---EIAMLEG 62
LD KR+A + Y+ D SA EA +A+ T+T++ AR + +I ++G
Sbjct: 11 LDGVAKRLADRGYTLDVAAFSALEAERRAIQTRTEELQARRNSLSKQIGAMKG 63
>sp|Q0BHH5|SYS_BURCM Serine--tRNA ligase OS=Burkholderia ambifaria (strain ATCC
BAA-244 / AMMD) GN=serS PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 13 LDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEA---EIAMLEG 62
LD KR+A + Y+ D SA EA +A+ T+T++ AR + +I ++G
Sbjct: 11 LDGVAKRLADRGYTLDVAAFSALEAERRAIQTRTEELQARRNSLSKQIGAMKG 63
>sp|B1YUL5|SYS_BURA4 Serine--tRNA ligase OS=Burkholderia ambifaria (strain MC40-6)
GN=serS PE=3 SV=1
Length = 433
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 13 LDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEA---EIAMLEG 62
LD KR+A + Y+ D SA EA +A+ T+T++ AR + +I ++G
Sbjct: 11 LDGVAKRLADRGYTLDVAAFSALEAERRAIQTRTEELQARRNSLSKQIGAMKG 63
>sp|A9AES3|SYS_BURM1 Serine--tRNA ligase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=serS PE=3 SV=1
Length = 433
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 13 LDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNAR 52
LD KR+A + Y+ D SA EA +A+ T+T++ AR
Sbjct: 11 LDGVAKRLADRGYTLDVAAFSALEAERRAIQTRTEELQAR 50
>sp|Q9AEN2|SYS_BURCE Serine--tRNA ligase OS=Burkholderia cepacia GN=serS PE=3 SV=1
Length = 433
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 13 LDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNAR 52
LD KR+A + Y+ D SA EA +A+ T+T++ AR
Sbjct: 11 LDGVAKRLADRGYTLDVAAFSALEAERRAIQTRTEELQAR 50
>sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2
PE=3 SV=1
Length = 154
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 10 ILLLDSEGKRVAVKYYSNDWP-TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK 68
+LLL +GK K+YS P TN K F + + + + E +I +K
Sbjct: 6 LLLLSRQGKTRLTKWYS---PFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKII-FK 61
Query: 69 FVQDLHFFVTGGEDENELILATVLQGF 95
L+F V ++NELI+ ++ F
Sbjct: 62 RYASLYFVVCCDREDNELIVLEIIHHF 88
>sp|P70696|H2B1A_MOUSE Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=1 SV=3
Length = 127
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 34 AKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQ 93
+K+ F+KAV TKTQK R ++ +YK ++ +H TG + I+ + +
Sbjct: 12 SKKGFKKAV-TKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPD-TGISSKAMSIMNSFVT 69
Query: 94 GFFDAVGL-LLRLLHY 108
F+ + RL HY
Sbjct: 70 DIFERIASEASRLAHY 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,035,074
Number of Sequences: 539616
Number of extensions: 1295622
Number of successful extensions: 3506
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3471
Number of HSP's gapped (non-prelim): 36
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)