Query 033593
Match_columns 115
No_of_seqs 111 out of 371
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:09:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 3.5E-30 1.2E-34 186.4 15.0 101 2-106 8-109 (153)
2 1w63_Q Adapter-related protein 99.9 9.8E-25 3.3E-29 157.9 15.5 98 6-106 1-98 (158)
3 2vgl_S AP-2 complex subunit si 99.9 1.5E-24 5E-29 154.0 15.5 98 6-106 1-98 (142)
4 2vgl_M AP-2 complex subunit MU 99.8 2.4E-18 8.2E-23 140.4 12.0 96 6-106 1-96 (435)
5 1w63_M Adaptor-related protein 99.8 5E-18 1.7E-22 138.0 11.0 98 6-107 2-99 (423)
6 3cpt_A Mitogen-activated prote 95.9 0.13 4.5E-06 36.4 10.4 97 3-101 34-135 (143)
7 2nut_C Vesicle-trafficking pro 91.7 2.7 9.2E-05 30.1 12.8 97 6-104 2-101 (196)
8 2vx8_A Nucleoporin-like protei 83.6 9.6 0.00033 27.0 8.8 82 17-105 54-135 (169)
9 3bw6_A Synaptobrevin homolog Y 80.7 11 0.00038 25.7 11.7 97 7-103 7-109 (144)
10 4b93_A Vesicle-associated memb 62.0 39 0.0013 23.9 10.2 81 16-103 11-91 (189)
11 4afi_A AP-3 complex subunit de 61.8 39 0.0013 23.8 9.9 81 17-104 64-144 (173)
12 2j3t_C Trafficking protein par 61.4 36 0.0012 23.2 11.7 94 6-101 2-107 (145)
13 2hz5_A Dynein light chain 2A, 54.8 16 0.00054 24.1 3.9 20 4-23 24-43 (106)
14 2j3w_A Sedlin, trafficking pro 51.4 53 0.0018 22.1 12.8 98 7-105 6-114 (142)
15 3cue_C Transport protein parti 48.5 65 0.0022 22.3 9.4 99 6-106 2-119 (159)
16 3t12_B Gliding protein MGLB; G 35.1 1E+02 0.0035 20.8 8.0 78 6-84 25-111 (136)
17 4g2e_A Peroxiredoxin; redox pr 35.0 41 0.0014 22.1 3.6 20 7-26 119-138 (157)
18 3me7_A Putative uncharacterize 33.3 55 0.0019 21.7 4.1 19 8-27 128-146 (170)
19 3a0s_A Sensor protein; PAS-fol 33.1 32 0.0011 18.3 2.5 15 8-22 3-17 (96)
20 3sbc_A Peroxiredoxin TSA1; alp 31.1 1E+02 0.0035 22.3 5.5 30 6-35 142-172 (216)
21 3l7h_A RE64145P, roadblock; LC 31.0 1.1E+02 0.0036 19.7 8.8 77 3-82 14-96 (97)
22 4gqc_A Thiol peroxidase, perox 27.3 1.4E+02 0.0047 19.7 6.2 21 7-27 121-141 (164)
23 4hi4_A Aerotaxis transducer AE 27.0 44 0.0015 20.2 2.5 15 8-22 16-30 (121)
24 3p7x_A Probable thiol peroxida 27.0 87 0.003 20.4 4.2 20 7-26 129-148 (166)
25 1vet_B P14, late endosomal/lys 26.7 1.4E+02 0.0047 19.6 14.4 99 4-105 16-121 (125)
26 3gkn_A Bacterioferritin comigr 24.3 1.4E+02 0.0049 18.9 4.9 17 7-23 125-141 (163)
27 3b33_A Sensor protein; structu 23.9 59 0.002 18.8 2.6 15 8-22 18-32 (115)
28 3e4w_A Putative uncharacterize 22.6 71 0.0024 24.7 3.4 49 2-50 167-225 (320)
29 3or5_A Thiol:disulfide interch 22.4 1.4E+02 0.0049 18.7 4.5 22 4-26 114-135 (165)
30 3ixr_A Bacterioferritin comigr 21.6 1.4E+02 0.0047 19.9 4.4 17 7-23 141-157 (179)
31 3leq_A Uncharacterized protein 21.3 1.8E+02 0.0061 19.0 9.0 100 3-104 15-121 (126)
32 3drn_A Peroxiredoxin, bacterio 20.4 1.8E+02 0.0061 18.6 4.9 17 7-23 111-127 (161)
33 3gl3_A Putative thiol:disulfid 20.4 1.5E+02 0.0052 18.3 4.3 39 6-48 105-143 (152)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.97 E-value=3.5e-30 Score=186.38 Aligned_cols=101 Identities=44% Similarity=0.761 Sum_probs=94.0
Q ss_pred CCcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecC
Q 033593 2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE 81 (115)
Q Consensus 2 ~sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~ 81 (115)
.|+|||+|++|+|++||||++|||.+.+++.++|+++|+++|+++++. +++++.++++++|||+++||+|+++++.
T Consensus 8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~----~~~i~~~~~~~~vy~~~~~Lyfv~~~~~ 83 (153)
T 3tjz_C 8 PSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRT----DSEIALLEGLTVVYKSSIDLYFYVIGSS 83 (153)
T ss_dssp CCSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSC----CCCEEEETTEEEEEEECSSCEEEEEEET
T ss_pred ccHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC----CCCEEEECCEEEEEEEECCEEEEEEEcC
Confidence 589999999999999999999999986568899999999999998542 4799999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhhh-CCc
Q 033593 82 DENELILATVLQGFFDAVGLLL-RLL 106 (115)
Q Consensus 82 ~ENEL~l~~~i~~~veaLd~~f-~~~ 106 (115)
+|||++++++||.|+|+|+.+| ++.
T Consensus 84 ~eNel~ile~L~~~ve~l~~yf~~~v 109 (153)
T 3tjz_C 84 YENELMLMTVLNCLFDSLSQMLRKNV 109 (153)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCChHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999 654
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.93 E-value=9.8e-25 Score=157.85 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=91.9
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE 85 (115)
||+|++|+|++||+|++|||.+. +.++|+++++++++++.++++ ..++++.++++++|||++++|+|+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKP-KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCS-SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCC-CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 79999999999999999999974 788899999999999998764 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCc
Q 033593 86 LILATVLQGFFDAVGLLLRLL 106 (115)
Q Consensus 86 L~l~~~i~~~veaLd~~f~~~ 106 (115)
|+++++||.|+|+|+.+|++.
T Consensus 78 l~~le~L~~~vevl~~yf~~v 98 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSV 98 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999974
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.93 E-value=1.5e-24 Score=153.99 Aligned_cols=98 Identities=17% Similarity=0.308 Sum_probs=91.6
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE 85 (115)
||+|++|+|++||+|++|||.+ ++.++|+++++++++++.+++++ .++++.++++++|||+++||+|+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~--~~~~~~~~~~~~f~~~v~~~~~~-~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQ--FDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSC--CCHHHHHHHHHHHHHHHHTCCTT-SCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCC--CChhhhHHHHHHHHHHHhcCCCC-CCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 7999999999999999999987 47888999999999999976542 58999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCc
Q 033593 86 LILATVLQGFFDAVGLLLRLL 106 (115)
Q Consensus 86 L~l~~~i~~~veaLd~~f~~~ 106 (115)
|+++++||.++|+|+.+|++.
T Consensus 78 l~~le~L~~~ve~l~~yf~~v 98 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHNV 98 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999974
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.77 E-value=2.4e-18 Score=140.36 Aligned_cols=96 Identities=11% Similarity=0.225 Sum_probs=79.9
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE 85 (115)
||+|++|+|++||+|++|||.+. .+.....+|++.+. ...+...++++.++++++||+++++|+|+++++.++||
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~-~~~~~~~~f~~~v~----~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 75 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDD-IGRNAVDAFRVNVI----HARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA 75 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSS-CCHHHHHHHHHHTT----TCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred CeEEEEEECCCCCEEEEEecCCC-CChhHHHHHHHHHh----ccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999974 23333444444333 22222357999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCc
Q 033593 86 LILATVLQGFFDAVGLLLRLL 106 (115)
Q Consensus 86 L~l~~~i~~~veaLd~~f~~~ 106 (115)
|+++++||.|+|+|+.+|++.
T Consensus 76 l~~le~L~~~v~vl~~yf~~v 96 (435)
T 2vgl_M 76 AMVFEFLYKMCDVMAAYFGKI 96 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999974
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.75 E-value=5e-18 Score=138.04 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=84.8
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcch
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE 85 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENE 85 (115)
||+|++|+|++||+|++|||.+.. +.....+|++.+.++.... ..++++.++++++||++++||+|+++++.++||
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~-~~~~~~~f~~~v~~~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~ 77 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDV-DMSEVEHFMPILMEKEEEG---MLSPILAHGGVRFMWIKHNNLYLVATSKKNACV 77 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSC-TTTTHHHHHHHHHHHHHTS---CCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred ceEEEEEECCCCCEEEEEecCCCC-ChHHHHHHHHHHhhccccC---CCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 899999999999999999998742 2334677888887765411 146999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCcc
Q 033593 86 LILATVLQGFFDAVGLLLRLLH 107 (115)
Q Consensus 86 L~l~~~i~~~veaLd~~f~~~~ 107 (115)
|+++++||.|+|+|+.+|++.+
T Consensus 78 l~~le~L~~~v~~l~~yf~~v~ 99 (423)
T 1w63_M 78 SLVFSFLYKVVQVFSEYFKELE 99 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998753
No 6
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=95.91 E-value=0.13 Score=36.42 Aligned_cols=97 Identities=12% Similarity=0.154 Sum_probs=71.1
Q ss_pred CcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCC-----CccccceEEecCeEEEEEEeceEEEEE
Q 033593 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTN-----ARTEAEIAMLEGNVIVYKFVQDLHFFV 77 (115)
Q Consensus 3 sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~-----~~~~~~i~~~~~~~vVyr~~adl~f~v 77 (115)
+..-+++|+|-|++|-+++.-..+.. +...-+..|... |..+..+. +++..=|..|+++.+|--...-+++.+
T Consensus 34 rv~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsT-f~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~ 111 (143)
T 3cpt_A 34 SVEGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLST-FALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSF 111 (143)
T ss_dssp GSTTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHH-HHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred ccCCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhh-HHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEE
Confidence 35568999999999999998887653 445556677766 55444332 233345777999999988999999999
Q ss_pred EecCCcchHHHHHHHHHHHHHHHh
Q 033593 78 TGGEDENELILATVLQGFFDAVGL 101 (115)
Q Consensus 78 v~~~~ENEL~l~~~i~~~veaLd~ 101 (115)
+++++-|==.++.+=+.+...|+.
T Consensus 112 Ias~~aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 112 IASSSANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCchhHhhhHHHHHHHHHH
Confidence 999999987777765555555544
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=91.67 E-value=2.7 Score=30.08 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=64.8
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCC---CChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCC
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDW---PTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGED 82 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~---~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ 82 (115)
||...+|--.....+|+.+++... .+..+-+++-+.+.+++...++ .--.+..+++.+-|-.-.++.+++++|.+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~--~r~s~~~~~y~fhy~~~~gl~~l~i~d~~ 79 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSP--TRCTLEAGAMTFHYIIEQGVCYLVLCEAA 79 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSC--SEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence 677777776544566667776421 1233456666788888765221 11345678999999999999999999998
Q ss_pred cchHHHHHHHHHHHHHHHhhhC
Q 033593 83 ENELILATVLQGFFDAVGLLLR 104 (115)
Q Consensus 83 ENEL~l~~~i~~~veaLd~~f~ 104 (115)
-..-....+|+-+.+-...-++
T Consensus 80 yp~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 80 FPKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcc
Confidence 8888777777766655544443
No 8
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=83.62 E-value=9.6 Score=26.98 Aligned_cols=82 Identities=9% Similarity=0.015 Sum_probs=58.2
Q ss_pred CCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcchHHHHHHHHHHH
Q 033593 17 GKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFF 96 (115)
Q Consensus 17 Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENEL~l~~~i~~~v 96 (115)
|..+++.|-+.. .+ -+..-+.+.+++..++.| ..+..+++.+=|..-.++.++++.|.+-.-.....+|+-+.
T Consensus 54 G~~VLae~t~~~-gn---f~~iak~ll~kl~~~~~r---~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~ 126 (169)
T 2vx8_A 54 GTTILAKHAWCG-GN---FLEVTEQILAKIPSENNK---LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 126 (169)
T ss_dssp TTEEEEEEESSC-BS---HHHHHHHHHTTSCSSCEE---EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCEEEEEeccCC-CC---HHHHHHHHHhhCCCCCCc---eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHH
Confidence 679999885432 22 334556777776653322 45667999999999999999999999887777777777776
Q ss_pred HHHHhhhCC
Q 033593 97 DAVGLLLRL 105 (115)
Q Consensus 97 eaLd~~f~~ 105 (115)
+-...-+++
T Consensus 127 ~eF~~~y~~ 135 (169)
T 2vx8_A 127 KRFQTTYGS 135 (169)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhh
Confidence 666555543
No 9
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=80.75 E-value=11 Score=25.69 Aligned_cols=97 Identities=9% Similarity=-0.098 Sum_probs=58.9
Q ss_pred EeEEEEEcCCC--CEEEEeeCCCCCCCh---HHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEE-EeceEEEEEEec
Q 033593 7 IKNILLLDSEG--KRVAVKYYSNDWPTN---SAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK-FVQDLHFFVTGG 80 (115)
Q Consensus 7 I~ailIld~~G--kr~~sKyY~~~~~~~---~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr-~~adl~f~vv~~ 80 (115)
|-+++|+-..+ -.+++..++-...+. ...++|-..+-+.+.++...+.-.-+..++|++=|- +..++.+++++|
T Consensus 7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i~D 86 (144)
T 3bw6_A 7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITD 86 (144)
T ss_dssp EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence 45665665433 678888887532122 112444333333333322111224566799988887 779999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHhhh
Q 033593 81 EDENELILATVLQGFFDAVGLLL 103 (115)
Q Consensus 81 ~~ENEL~l~~~i~~~veaLd~~f 103 (115)
.+--.-+-..+|+-+.+-...-+
T Consensus 87 ~~yp~rvAF~~L~~i~~eF~~~y 109 (144)
T 3bw6_A 87 KEYPVRPAYTLLNKILDEYLVAH 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCChhHHHHHHHHHHHHHHHHc
Confidence 88888877777776666554433
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=62.00 E-value=39 Score=23.87 Aligned_cols=81 Identities=9% Similarity=0.018 Sum_probs=53.3
Q ss_pred CCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcchHHHHHHHHHH
Q 033593 16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF 95 (115)
Q Consensus 16 ~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENEL~l~~~i~~~ 95 (115)
.|.++++.|=... .+. ..+-+++..|+...++ --....+++.+-|-.-.++.+++++|.+-..-.-..+|+-+
T Consensus 11 rg~~iLae~t~~~-gnf---~~ia~~iL~kip~~~~---k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i 83 (189)
T 4b93_A 11 RGTTILAKHAWCG-GNF---LEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV 83 (189)
T ss_dssp ETTEEEEEEESSE-ECH---HHHHHHHHTTCCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred eCCEEEEeCCCCC-CCH---HHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence 3899999984432 232 2334445544432221 23566899999999999999999999888777766666666
Q ss_pred HHHHHhhh
Q 033593 96 FDAVGLLL 103 (115)
Q Consensus 96 veaLd~~f 103 (115)
.+-...-+
T Consensus 84 ~~eF~~~~ 91 (189)
T 4b93_A 84 KKRFQTTY 91 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 55544433
No 11
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=61.79 E-value=39 Score=23.83 Aligned_cols=81 Identities=9% Similarity=0.015 Sum_probs=52.6
Q ss_pred CCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCCccccceEEecCeEEEEEEeceEEEEEEecCCcchHHHHHHHHHHH
Q 033593 17 GKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFF 96 (115)
Q Consensus 17 Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~~~~~~i~~~~~~~vVyr~~adl~f~vv~~~~ENEL~l~~~i~~~v 96 (115)
|.++++.|=... .+.. .+-+++.+|+...+. --.+..+++.+-|-.-.++.+++++|.+-.--.-..+|+-+.
T Consensus 64 g~tiLAE~t~~~-gnf~---~va~~iL~kip~~~~---r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~ 136 (173)
T 4afi_A 64 GTTILAKHAWCG-GNFL---EVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK 136 (173)
T ss_dssp TTEEEEEEESSC-CCHH---HHHHHHHTTSCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCC-CCHH---HHHHHHHHhCCCCCC---eEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHH
Confidence 789999986543 2332 333444444433221 135567999999998999999999998887666666666555
Q ss_pred HHHHhhhC
Q 033593 97 DAVGLLLR 104 (115)
Q Consensus 97 eaLd~~f~ 104 (115)
+....-++
T Consensus 137 ~eF~~~yg 144 (173)
T 4afi_A 137 KRFQTTYG 144 (173)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhc
Confidence 55544443
No 12
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=61.36 E-value=36 Score=23.19 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=54.7
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCC---CC-hHHHHHHHHHHH------HHHhcCCCccccceEEecCeEEEEE-EeceEE
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDW---PT-NSAKEAFEKAVF------TKTQKTNARTEAEIAMLEGNVIVYK-FVQDLH 74 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~---~~-~~~q~~fE~~i~------~k~~~~~~~~~~~i~~~~~~~vVyr-~~adl~ 74 (115)
+|..+.|+|++|..++.+=+.+.. .+ .++.+-+-.-+| +++...++...-..+..+++++=+- .-..+-
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK 81 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK 81 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence 478899999999999999886531 12 333333332222 3333221110013445577766544 455799
Q ss_pred EEEEecCCcchHHHHHHHHHHH-HHHHh
Q 033593 75 FFVTGGEDENELILATVLQGFF-DAVGL 101 (115)
Q Consensus 75 f~vv~~~~ENEL~l~~~i~~~v-eaLd~ 101 (115)
|+++.|..+++ +-++++.++ |.--.
T Consensus 82 Fvl~td~~~~~--i~~~l~~iy~~lYv~ 107 (145)
T 2j3t_C 82 VVMNTDLGVGP--IRDVLHHIYSALYVE 107 (145)
T ss_dssp EEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred EEEEecCCcch--HHHHHHHHHHHHHHH
Confidence 99999987765 445555555 44333
No 13
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=54.83 E-value=16 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=16.8
Q ss_pred cceEeEEEEEcCCCCEEEEe
Q 033593 4 CPSIKNILLLDSEGKRVAVK 23 (115)
Q Consensus 4 l~~I~ailIld~~Gkr~~sK 23 (115)
-+-|.+++|+|++|.++-+-
T Consensus 24 ~kgV~G~iIln~~G~pIrSt 43 (106)
T 2hz5_A 24 QKGVQGIIVVNTEGIPIKST 43 (106)
T ss_dssp STTEEEEEEECTTCCEEEES
T ss_pred CCCceEEEEEcCCCCeEEEe
Confidence 36799999999999888753
No 14
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=51.41 E-value=53 Score=22.11 Aligned_cols=98 Identities=5% Similarity=-0.050 Sum_probs=56.2
Q ss_pred EeEEEEEcCCCCEEEEeeCCCCCC-C--hHHHHHHHHHHHH------HHhcC-CCccccceEEecCeEEEEE-EeceEEE
Q 033593 7 IKNILLLDSEGKRVAVKYYSNDWP-T--NSAKEAFEKAVFT------KTQKT-NARTEAEIAMLEGNVIVYK-FVQDLHF 75 (115)
Q Consensus 7 I~ailIld~~Gkr~~sKyY~~~~~-~--~~~q~~fE~~i~~------k~~~~-~~~~~~~i~~~~~~~vVyr-~~adl~f 75 (115)
|.++.|+|++|+.++.+=|.+..+ + .+.+..+.--+|. +.... ++..-..+--++++++=+- .-..+-|
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf 85 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 85 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence 689999999999999998865311 1 1222233211332 22211 1100012222456655444 4456889
Q ss_pred EEEecCCcchHHHHHHHHHHHHHHHhhhCC
Q 033593 76 FVTGGEDENELILATVLQGFFDAVGLLLRL 105 (115)
Q Consensus 76 ~vv~~~~ENEL~l~~~i~~~veaLd~~f~~ 105 (115)
+++.+.. ||-.+-++++.++++--.+.-|
T Consensus 86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 86 IMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp EEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 9998873 5666778888887766655543
No 15
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=48.47 E-value=65 Score=22.29 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=53.0
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCC---------C-ChHHHHHHHHHHH---HHHhcCCCccc-cce--EEecCeEEEEEE
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDW---------P-TNSAKEAFEKAVF---TKTQKTNARTE-AEI--AMLEGNVIVYKF 69 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~---------~-~~~~q~~fE~~i~---~k~~~~~~~~~-~~i--~~~~~~~vVyr~ 69 (115)
+|.++.|+|++|+.++.+=|.+.. . +.++.+-+-.-+| ..+.+.+.... +.+ +.-+++++=+-.
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e 81 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC 81 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence 477899999999999988665310 0 1122222222222 22223221111 222 223566665554
Q ss_pred -eceEEEEEEecCCcchHHHHHHHHHHHH-HHHh-hhCCc
Q 033593 70 -VQDLHFFVTGGEDENELILATVLQGFFD-AVGL-LLRLL 106 (115)
Q Consensus 70 -~adl~f~vv~~~~ENEL~l~~~i~~~ve-aLd~-~f~~~ 106 (115)
-..+-|+++.|..++++ -++++.+++ +--. +.+|.
T Consensus 82 T~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv~kNP 119 (159)
T 3cue_C 82 TASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYVSNNL 119 (159)
T ss_dssp CSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHHHSCT
T ss_pred eCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHhCC
Confidence 44799999999887765 356666665 4444 34554
No 16
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=35.12 E-value=1e+02 Score=20.80 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=46.2
Q ss_pred eEeEEEEEcCCCCEEEEeeC---CCCCCChHHHHHHHHHHHHHHhcCCC---ccc-cc-eEEecCeEEEEEEe-ceEEEE
Q 033593 6 SIKNILLLDSEGKRVAVKYY---SNDWPTNSAKEAFEKAVFTKTQKTNA---RTE-AE-IAMLEGNVIVYKFV-QDLHFF 76 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY---~~~~~~~~~q~~fE~~i~~k~~~~~~---~~~-~~-i~~~~~~~vVyr~~-adl~f~ 76 (115)
-++++++.|++|..+.++=- ... ++.+.=.++-...|..+..... ..+ .+ +...++..+..... .+..++
T Consensus 25 gv~~~~lvd~dG~vIa~~~~~~~~~~-~d~~~lAAl~A~~~~a~~~la~~Lge~~~~~l~~eGe~~~i~i~~vg~~~iLv 103 (136)
T 3t12_B 25 GARYALLIDRKGFVLAHKEALWAPKP-PPLDTLATLVASNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLV 103 (136)
T ss_dssp CCSEEEEEETTC-CCEEEECTTSCCC-SCHHHHHHHHHHHHHHHHHHHHHTTCSCCCCEEEECSSCEEEEEESSTTEEEE
T ss_pred CCeEEEEEcCCCCEEEEeccccCCCC-CcHHHHHHHHHHHHHHHHHHHHHHCCCchhHheEEcCcCCEEEEEcCCCEEEE
Confidence 47899999999999999764 222 3554445555555544432211 111 22 33445555555555 569999
Q ss_pred EEecCCcc
Q 033593 77 VTGGEDEN 84 (115)
Q Consensus 77 vv~~~~EN 84 (115)
++.|.+-|
T Consensus 104 vifd~~~~ 111 (136)
T 3t12_B 104 LVFDETAP 111 (136)
T ss_dssp EEECTTSC
T ss_pred EEeCCCCC
Confidence 99998766
No 17
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=35.03 E-value=41 Score=22.15 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=15.7
Q ss_pred EeEEEEEcCCCCEEEEeeCC
Q 033593 7 IKNILLLDSEGKRVAVKYYS 26 (115)
Q Consensus 7 I~ailIld~~Gkr~~sKyY~ 26 (115)
..+.+++|++|+.+.+....
T Consensus 119 ~p~tflID~~G~I~~~~~~~ 138 (157)
T 4g2e_A 119 KRAVFVIDKEGKVRYKWVSD 138 (157)
T ss_dssp CEEEEEECTTSBEEEEEEES
T ss_pred eeeEEEECCCCEEEEEEECC
Confidence 45689999999999876543
No 18
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=33.33 E-value=55 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.189 Sum_probs=14.2
Q ss_pred eEEEEEcCCCCEEEEeeCCC
Q 033593 8 KNILLLDSEGKRVAVKYYSN 27 (115)
Q Consensus 8 ~ailIld~~Gkr~~sKyY~~ 27 (115)
-+++++|.+|+.+.. |+..
T Consensus 128 ~~~~lID~~G~i~~~-~~g~ 146 (170)
T 3me7_A 128 NVVVVLSPELQIKDY-IYGV 146 (170)
T ss_dssp CEEEEECTTSBEEEE-EESS
T ss_pred ceEEEECCCCeEEEE-EeCC
Confidence 368999999998755 5554
No 19
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=33.06 E-value=32 Score=18.30 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.6
Q ss_pred eEEEEEcCCCCEEEE
Q 033593 8 KNILLLDSEGKRVAV 22 (115)
Q Consensus 8 ~ailIld~~Gkr~~s 22 (115)
.+|+++|.+|+.+++
T Consensus 3 ~~i~~~d~~g~i~~~ 17 (96)
T 3a0s_A 3 TAIITLSKDGRITEW 17 (96)
T ss_dssp CEEEEEETTSBEEEE
T ss_pred ceEEEEcCCCCEeeh
Confidence 588999999998765
No 20
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=31.15 E-value=1e+02 Score=22.33 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=22.8
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCC-CCChHHH
Q 033593 6 SIKNILLLDSEGKRVAVKYYSND-WPTNSAK 35 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~-~~~~~~q 35 (115)
..++.+|+|.+|+.|..-+|+.+ ..+.++=
T Consensus 142 ~~R~tFiID~~G~Ir~~~v~~~~~grn~dEi 172 (216)
T 3sbc_A 142 ALRGLFIIDPKGVIRHITINDLPVGRNVDEA 172 (216)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred eeeEEEEECCCCeEEEEEEcCCCCCCCHHHH
Confidence 45899999999999999988753 1344443
No 21
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=30.96 E-value=1.1e+02 Score=19.66 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=39.5
Q ss_pred CcceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCC--ccccceEEe----cCeEEEEEEeceEEEE
Q 033593 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNA--RTEAEIAML----EGNVIVYKFVQDLHFF 76 (115)
Q Consensus 3 sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~--~~~~~i~~~----~~~~vVyr~~adl~f~ 76 (115)
+-+-|.|++|+|++|.++-+-+ +. ....+-..+-..+..++.+.-. -.++|+.+. ..+=++--.-.+..++
T Consensus 14 ~~kgV~G~iI~n~~G~pirst~-d~--~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~li 90 (97)
T 3l7h_A 14 SHKGVVGTIVVNNEGIPVKSTL-DN--TTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILI 90 (97)
T ss_dssp TSTTEEEEEEEETTSCEEEESS-CH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEE
T ss_pred cCCCceEEEEECCCCCEeEEeC-Ch--HHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEE
Confidence 3567999999999999986632 11 1122334455555555542100 112344432 2333333356666666
Q ss_pred EEecCC
Q 033593 77 VTGGED 82 (115)
Q Consensus 77 vv~~~~ 82 (115)
|+-++.
T Consensus 91 VvQ~~~ 96 (97)
T 3l7h_A 91 VIQNPT 96 (97)
T ss_dssp EEEC--
T ss_pred EEecCC
Confidence 665543
No 22
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=27.30 E-value=1.4e+02 Score=19.74 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=16.5
Q ss_pred EeEEEEEcCCCCEEEEeeCCC
Q 033593 7 IKNILLLDSEGKRVAVKYYSN 27 (115)
Q Consensus 7 I~ailIld~~Gkr~~sKyY~~ 27 (115)
..+.+|+|.+|+.+.+.....
T Consensus 121 ~p~tflID~~G~I~~~~~~~~ 141 (164)
T 4gqc_A 121 KRAVFIVKPDGTVAYKWVTDN 141 (164)
T ss_dssp CCEEEEECTTSBEEEEEECSC
T ss_pred eeEEEEECCCCEEEEEEEeCC
Confidence 356899999999998866543
No 23
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=27.00 E-value=44 Score=20.16 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=13.4
Q ss_pred eEEEEEcCCCCEEEE
Q 033593 8 KNILLLDSEGKRVAV 22 (115)
Q Consensus 8 ~ailIld~~Gkr~~s 22 (115)
.+|+++|.+|+.+++
T Consensus 16 ~gviv~D~~g~I~~~ 30 (121)
T 4hi4_A 16 ANVMIADNDLNIIYM 30 (121)
T ss_dssp SEEEEEETTCBEEEE
T ss_pred ccEEEEcCCCeEEEe
Confidence 689999999999876
No 24
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=26.97 E-value=87 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=16.0
Q ss_pred EeEEEEEcCCCCEEEEeeCC
Q 033593 7 IKNILLLDSEGKRVAVKYYS 26 (115)
Q Consensus 7 I~ailIld~~Gkr~~sKyY~ 26 (115)
..+.+++|++|+.+...+..
T Consensus 129 ~p~~~liD~~G~i~~~~~~~ 148 (166)
T 3p7x_A 129 ARAVFVLDADNKVVYKEIVS 148 (166)
T ss_dssp CCEEEEECTTCBEEEEEECS
T ss_pred eeEEEEECCCCeEEEEEEcC
Confidence 56789999999998876643
No 25
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=26.68 E-value=1.4e+02 Score=19.61 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=65.0
Q ss_pred cceEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhcCCC------ccccceEEecC-eEEEEEEeceEEEE
Q 033593 4 CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNA------RTEAEIAMLEG-NVIVYKFVQDLHFF 76 (115)
Q Consensus 4 l~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~~~~------~~~~~i~~~~~-~~vVyr~~adl~f~ 76 (115)
.+-|++.++++.||-.+.+.=.++ .+.+.=.+.-..++....+... ....-++.+++ ++++-.. .+.+++
T Consensus 16 ~~gv~~a~lvs~DGllia~s~~~~--~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a-~~a~L~ 92 (125)
T 1vet_B 16 TGGVQSTLLLNNEGSLLAYSGYGD--TDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRV-ANLLLC 92 (125)
T ss_dssp CTTEEEEEEECTTCCEEEEEECCS--SCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEE-TTEEEE
T ss_pred CCCceEEEEECCCCCeEEecCCCC--ccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEc-CCeEEE
Confidence 467999999999999999876643 3666667778888655443211 11122555654 5555555 999999
Q ss_pred EEecCCcchHHHHHHHHHHHHHHHhhhCC
Q 033593 77 VTGGEDENELILATVLQGFFDAVGLLLRL 105 (115)
Q Consensus 77 vv~~~~ENEL~l~~~i~~~veaLd~~f~~ 105 (115)
++++++-|-=.+.-=++.+++.|..-+++
T Consensus 93 Vla~~~a~lGlv~~~m~~lv~~L~~~lr~ 121 (125)
T 1vet_B 93 MYAKETVGFGMLKAKAQALVQYLEEPLTQ 121 (125)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHCC---
T ss_pred EEeCCCCChHHHHHHHHHHHHHHhhhhhh
Confidence 99998776555555566677777655544
No 26
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=24.25 E-value=1.4e+02 Score=18.94 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.3
Q ss_pred EeEEEEEcCCCCEEEEe
Q 033593 7 IKNILLLDSEGKRVAVK 23 (115)
Q Consensus 7 I~ailIld~~Gkr~~sK 23 (115)
+-+.+++|++|+.+..-
T Consensus 125 ~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 125 ERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CCEEEEECTTSCEEEEE
T ss_pred ceEEEEECCCCeEEEEE
Confidence 56799999999988764
No 27
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.91 E-value=59 Score=18.77 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.8
Q ss_pred eEEEEEcCCCCEEEE
Q 033593 8 KNILLLDSEGKRVAV 22 (115)
Q Consensus 8 ~ailIld~~Gkr~~s 22 (115)
.+++++|.+|+.+.+
T Consensus 18 ~~i~~~D~~g~I~~~ 32 (115)
T 3b33_A 18 TATLILDDGLAIRYA 32 (115)
T ss_dssp SEEEEECTTCBEEEE
T ss_pred ceEEEECCCCcEEEE
Confidence 589999999988765
No 28
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase, peroxidase, oxidoreductase; HET: HEM; 1.80A {Mycobacterium avium subsp} PDB: 3e4y_A*
Probab=22.58 E-value=71 Score=24.75 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCcceEeEEEEEcCCCCEEEEeeCCCC---CC--ChHH-----HHHHHHHHHHHHhcCC
Q 033593 2 DTCPSIKNILLLDSEGKRVAVKYYSND---WP--TNSA-----KEAFEKAVFTKTQKTN 50 (115)
Q Consensus 2 ~sl~~I~ailIld~~Gkr~~sKyY~~~---~~--~~~~-----q~~fE~~i~~k~~~~~ 50 (115)
+.=+.++++-..|.+|++.++||-=.+ .. +.++ ..-+.+++++.+.+.+
T Consensus 167 ~~~~s~htf~~~n~~G~~~~vK~~~~p~~g~~~l~~~ea~~~~pd~l~~dL~~~i~~g~ 225 (320)
T 3e4w_A 167 TEYHGLHAFRWIAADGSARFVRYHLVPTAAEEYLSASDARGKDPDFLTDELAARLQDGP 225 (320)
T ss_dssp SCEEEEEEEEEECTTSCEEEEEEEEEESSCCCEECHHHHHTSCTTHHHHHHHHHHHHSC
T ss_pred CCccccccEEEEcCCCCEEEEEEEEEeCCCCCCCCHHHhccCCccHHHHHHHHHHHhCC
Confidence 345679999999999999999997211 11 1221 1236678888887643
No 29
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=22.38 E-value=1.4e+02 Score=18.68 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=15.5
Q ss_pred cceEeEEEEEcCCCCEEEEeeCC
Q 033593 4 CPSIKNILLLDSEGKRVAVKYYS 26 (115)
Q Consensus 4 l~~I~ailIld~~Gkr~~sKyY~ 26 (115)
+..+-.++++|.+|+.+ .+|..
T Consensus 114 i~~~P~~~lid~~G~i~-~~~~g 135 (165)
T 3or5_A 114 ITGIPTSFVIDASGNVS-GVIVG 135 (165)
T ss_dssp SCSSSEEEEECTTSBEE-EEECS
T ss_pred CCCCCeEEEECCCCcEE-EEEcC
Confidence 34456789999999987 34444
No 30
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=21.56 E-value=1.4e+02 Score=19.86 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.1
Q ss_pred EeEEEEEcCCCCEEEEe
Q 033593 7 IKNILLLDSEGKRVAVK 23 (115)
Q Consensus 7 I~ailIld~~Gkr~~sK 23 (115)
+.+.+++|.+|+.+..-
T Consensus 141 ~p~~~lID~~G~I~~~~ 157 (179)
T 3ixr_A 141 ERSTFLIGPTHRIVEAW 157 (179)
T ss_dssp CCEEEEECTTSBEEEEE
T ss_pred ceEEEEECCCCEEEEEE
Confidence 45689999999988764
No 31
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=21.33 E-value=1.8e+02 Score=18.97 Aligned_cols=100 Identities=12% Similarity=0.172 Sum_probs=53.8
Q ss_pred CcceEeEEEEEcCCCCEEEEeeCCCCCCChHHH-HHHHHHHHHHHhcCCC---ccc--cceEEe-cCeEEEEEEeceEEE
Q 033593 3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAK-EAFEKAVFTKTQKTNA---RTE--AEIAML-EGNVIVYKFVQDLHF 75 (115)
Q Consensus 3 sl~~I~ailIld~~Gkr~~sKyY~~~~~~~~~q-~~fE~~i~~k~~~~~~---~~~--~~i~~~-~~~~vVyr~~adl~f 75 (115)
.+|-|++.++++.||-.+.+..=.+ ....++ .+.-..++....+... .++ .-++.. +++.+++....+.++
T Consensus 15 ~v~gv~~avlvs~DGl~ia~~~~~~--~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L 92 (126)
T 3leq_A 15 RVAEVDHAVVLSEDGLVVSKSTGFL--RDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHL 92 (126)
T ss_dssp HCTTEEEEEEEETTSCEEEECTTSC--HHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEE
T ss_pred cCCCceEEEEEcCCCcEEEeeCCCC--cccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEE
Confidence 4688999999999999888743111 112233 2333444444333321 111 123334 566777776667999
Q ss_pred EEEecCCcchHHHHHHHHHHHHHHHhhhC
Q 033593 76 FVTGGEDENELILATVLQGFFDAVGLLLR 104 (115)
Q Consensus 76 ~vv~~~~ENEL~l~~~i~~~veaLd~~f~ 104 (115)
.++++++-|==.+.--+..+++-+-..+.
T Consensus 93 ~vla~~~a~lG~v~~em~~~v~ri~~~L~ 121 (126)
T 3leq_A 93 VVLTRQGADVGVVAYQMNMLVKKIGEHLS 121 (126)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHC-----
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99998887765555556666666555443
No 32
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=20.40 E-value=1.8e+02 Score=18.62 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.8
Q ss_pred EeEEEEEcCCCCEEEEe
Q 033593 7 IKNILLLDSEGKRVAVK 23 (115)
Q Consensus 7 I~ailIld~~Gkr~~sK 23 (115)
+-+.+++|++|+.+..-
T Consensus 111 ~P~~~lid~~G~i~~~~ 127 (161)
T 3drn_A 111 ARITFVIDKKGIIRHIY 127 (161)
T ss_dssp CCEEEEECTTSBEEEEE
T ss_pred cceEEEECCCCEEEEEE
Confidence 55789999999987763
No 33
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=20.37 E-value=1.5e+02 Score=18.31 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=22.9
Q ss_pred eEeEEEEEcCCCCEEEEeeCCCCCCChHHHHHHHHHHHHHHhc
Q 033593 6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQK 48 (115)
Q Consensus 6 ~I~ailIld~~Gkr~~sKyY~~~~~~~~~q~~fE~~i~~k~~~ 48 (115)
.+-.++++|.+|+.+.. +... ......++++.|-+....
T Consensus 105 ~~P~~~lid~~G~i~~~-~~g~---~~~~~~~l~~~i~~~~~~ 143 (152)
T 3gl3_A 105 GMPTSFLIDRNGKVLLQ-HVGF---RPADKEALEQQILAALGG 143 (152)
T ss_dssp SSSEEEEECTTSBEEEE-EESC---CTTTHHHHHHHHHHHTC-
T ss_pred CCCeEEEECCCCCEEEE-EccC---CCcCHHHHHHHHHHHHcc
Confidence 34568999999987764 3332 122456666666544433
Done!