BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033594
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UP92|YL018_MIMIV Putative sel1-like repeat-containing protein L18 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L18 PE=4 SV=1
Length = 584
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 42 FRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85
F + AK GD Q +GQMY+ G ++ QK WI++++
Sbjct: 120 FENVKLAAKTGDSMAQYNLGQMYYRGISTKKNIQKAIKWITKSA 163
>sp|Q6FNV5|HRD3_CANGA ERAD-associated E3 ubiquitin-protein ligase component HRD3
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=HRD3 PE=3 SV=1
Length = 833
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 47 KEAKGGDINMQVLVGQMYFSGYGVARDAQKG 77
+ A+ GD+ + ++ YFSGY VARD K
Sbjct: 178 RSARLGDLKAKQVLAYRYFSGYSVARDVDKA 208
>sp|Q80Z70|SE1L1_RAT Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2
Length = 794
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 32 EVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
+V D ++F+ K A+ G ++ Q+ +G MY++G GV RD ++ + + AS+
Sbjct: 464 QVNYDLALKYFQ---KAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQ 515
>sp|Q9Z2G6|SE1L1_MOUSE Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2
Length = 790
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 32 EVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
+V D ++F+ K A+ G ++ Q+ +G MY++G GV RD ++ + + AS+
Sbjct: 460 QVNYDLALKYFQ---KAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQ 511
>sp|Q9UBV2|SE1L1_HUMAN Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3
Length = 794
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 32 EVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
+V D ++F+ K A+ G ++ Q+ +G MY++G GV RD ++ + + AS+
Sbjct: 464 QVNYDLALKYFQ---KAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQ 515
>sp|P77234|YBEQ_ECOLI Uncharacterized protein YbeQ OS=Escherichia coli (strain K12)
GN=ybeQ PE=4 SV=2
Length = 325
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 46 LKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSV 91
LK A G + V +G MY G GV +D Q W ++A+ +
Sbjct: 232 LKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDAT 277
>sp|Q9ESM7|SE1L1_MESAU Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1
Length = 794
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 32 EVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86
+V D ++F+ K A+ G ++ Q+ +G MY++G GV RD ++ + + AS+
Sbjct: 464 QVNYDLALKYFQ---KAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQ 515
>sp|O25001|HCPA_HELPY Beta-lactamase HcpA OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=hcpA PE=1 SV=1
Length = 250
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 59 LVGQMYFSGYGVARDAQKGRIWISRAS 85
L+G +Y++G GV++DA+K + S+A
Sbjct: 102 LLGNLYYNGQGVSKDAKKASQYYSKAC 128
>sp|Q9JZ25|Y1327_NEIMB Uncharacterized protein NMB1327 OS=Neisseria meningitidis serogroup
B (strain MC58) GN=NMB1327 PE=1 SV=1
Length = 467
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 49 AKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSV 91
A+ G Q +G MY+ G G+ D + R W +A+ + S+
Sbjct: 374 AELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKAAAKKDSM 416
>sp|A5PLI4|LR2BP_DANRE LRP2-binding protein OS=Danio rerio GN=lrp2bp PE=2 SV=1
Length = 343
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGY 101
G + Q +G MY G+GV RD+ + A+ R SV+ G Y
Sbjct: 204 GSLESQAALGLMYLYGHGVQRDSDSALFCLKEAAE-RGSVYAQGHLTACY 252
>sp|Q3V172|SE1L2_MOUSE Protein sel-1 homolog 2 OS=Mus musculus GN=Sel1l2 PE=2 SV=1
Length = 688
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 46 LKEAKGGDINMQVLVGQMYFSGYGVA 71
LK AK G N +G+MYF G A
Sbjct: 326 LKAAKAGSANAMAFIGKMYFEGNAAA 351
>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
GN=poe PE=3 SV=1
Length = 5381
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 24 ETTRVPLSEVVSDCVKRWFR---DTLKEAKGGDINMQVLVGQMYFSGY 68
+ T VPLSE ++DC ++ + +EA G D + + VG S Y
Sbjct: 198 KMTWVPLSEEITDCTEQLLAANVEVFQEANGVDTLLDICVGLPILSRY 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.123 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,347,320
Number of Sequences: 539616
Number of extensions: 1477377
Number of successful extensions: 6274
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6204
Number of HSP's gapped (non-prelim): 90
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)