Query 033594
Match_columns 115
No_of_seqs 136 out of 1076
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00671 SEL1 Sel1-like repe 99.1 1E-10 2.3E-15 64.9 4.5 36 54-89 1-36 (36)
2 COG0790 FOG: TPR repeat, SEL1 99.1 3E-10 6.5E-15 88.1 6.9 59 36-97 172-230 (292)
3 PF08238 Sel1: Sel1 repeat; I 99.1 1.6E-10 3.6E-15 65.3 3.8 36 54-89 1-39 (39)
4 COG0790 FOG: TPR repeat, SEL1 99.1 4.7E-10 1E-14 87.0 6.9 60 35-97 93-155 (292)
5 KOG1550 Extracellular protein 98.8 8.2E-09 1.8E-13 88.9 6.9 61 34-97 343-403 (552)
6 KOG1550 Extracellular protein 98.5 3E-07 6.4E-12 79.3 7.5 62 35-99 228-297 (552)
7 KOG4014 Uncharacterized conser 97.4 0.00093 2E-08 52.7 7.7 48 36-86 185-232 (248)
8 KOG4014 Uncharacterized conser 96.5 0.0037 8E-08 49.4 4.4 61 35-98 128-208 (248)
9 PF07719 TPR_2: Tetratricopept 94.0 0.14 2.9E-06 27.1 3.9 30 54-87 1-30 (34)
10 PF13432 TPR_16: Tetratricopep 93.9 0.23 5E-06 30.0 5.2 47 35-88 13-61 (65)
11 PF13414 TPR_11: TPR repeat; P 92.6 0.42 9E-06 29.0 5.0 48 34-87 18-67 (69)
12 PF00515 TPR_1: Tetratricopept 90.1 0.8 1.7E-05 24.3 3.9 30 54-87 1-30 (34)
13 PF13424 TPR_12: Tetratricopep 89.9 0.81 1.7E-05 28.4 4.4 48 35-86 21-74 (78)
14 PF13176 TPR_7: Tetratricopept 89.1 0.97 2.1E-05 24.9 3.9 26 56-85 1-26 (36)
15 TIGR02552 LcrH_SycD type III s 88.2 2.9 6.2E-05 28.1 6.5 45 37-88 69-115 (135)
16 PF13374 TPR_10: Tetratricopep 87.6 1.4 3.1E-05 23.7 3.9 29 54-86 2-30 (42)
17 PF08238 Sel1: Sel1 repeat; I 87.4 0.67 1.4E-05 25.2 2.4 17 34-53 23-39 (39)
18 PF13174 TPR_6: Tetratricopept 87.1 0.81 1.8E-05 23.7 2.6 29 55-87 1-29 (33)
19 PF14559 TPR_19: Tetratricopep 87.0 1.9 4.1E-05 25.8 4.6 51 33-90 5-57 (68)
20 PF13181 TPR_8: Tetratricopept 86.3 2.3 4.9E-05 22.3 4.1 29 55-87 2-30 (34)
21 smart00028 TPR Tetratricopepti 82.7 1.9 4.1E-05 20.2 2.6 29 55-87 2-30 (34)
22 TIGR02552 LcrH_SycD type III s 82.1 5.7 0.00012 26.6 5.6 48 36-90 34-83 (135)
23 PRK15359 type III secretion sy 80.5 8 0.00017 27.4 6.2 46 36-88 75-122 (144)
24 PRK10370 formate-dependent nit 80.4 7.6 0.00017 29.2 6.3 48 36-90 127-176 (198)
25 cd00189 TPR Tetratricopeptide 79.7 6.5 0.00014 22.4 4.7 47 35-88 16-64 (100)
26 PF13428 TPR_14: Tetratricopep 79.3 3.7 8.1E-05 23.3 3.4 30 55-88 2-31 (44)
27 PF13424 TPR_12: Tetratricopep 78.4 4.6 9.9E-05 24.9 3.9 29 55-87 6-34 (78)
28 PRK10803 tol-pal system protei 77.9 8.2 0.00018 30.7 6.1 30 54-87 180-209 (263)
29 PLN03098 LPA1 LOW PSII ACCUMUL 76.3 16 0.00035 31.9 7.8 51 36-93 92-147 (453)
30 PF13414 TPR_11: TPR repeat; P 75.7 5.7 0.00012 23.8 3.7 34 53-90 2-35 (69)
31 PRK02603 photosystem I assembl 75.2 13 0.00029 26.6 6.1 47 35-88 51-102 (172)
32 PLN03088 SGT1, suppressor of 72.9 14 0.00031 30.2 6.4 46 36-88 53-100 (356)
33 PF13431 TPR_17: Tetratricopep 72.5 4.5 9.7E-05 22.2 2.4 28 47-78 4-33 (34)
34 PRK15363 pathogenicity island 72.4 15 0.00032 27.6 5.9 46 36-88 86-133 (157)
35 TIGR02795 tol_pal_ybgF tol-pal 69.9 25 0.00055 22.3 6.1 29 54-86 39-67 (119)
36 PF12895 Apc3: Anaphase-promot 69.8 10 0.00022 23.9 4.0 44 36-83 6-50 (84)
37 CHL00033 ycf3 photosystem I as 69.7 22 0.00049 25.1 6.2 45 36-87 52-101 (168)
38 TIGR02795 tol_pal_ybgF tol-pal 69.4 23 0.00051 22.5 5.7 47 35-88 55-106 (119)
39 PRK15359 type III secretion sy 68.5 22 0.00048 25.0 5.9 46 36-88 41-88 (144)
40 TIGR02521 type_IV_pilW type IV 68.0 31 0.00066 23.8 6.5 46 36-88 48-95 (234)
41 PF12895 Apc3: Anaphase-promot 67.8 9.8 0.00021 24.0 3.6 43 36-84 42-84 (84)
42 PF13371 TPR_9: Tetratricopept 67.7 24 0.00051 21.1 5.2 49 35-90 11-61 (73)
43 PF14938 SNAP: Soluble NSF att 67.4 12 0.00025 29.4 4.6 51 34-87 89-144 (282)
44 KOG3617 WD40 and TPR repeat-co 67.2 7.5 0.00016 37.1 3.9 41 48-92 961-1001(1416)
45 PF10373 EST1_DNA_bind: Est1 D 66.0 11 0.00024 28.4 4.2 43 38-87 1-45 (278)
46 PF13281 DUF4071: Domain of un 65.2 19 0.0004 30.6 5.7 58 34-91 197-259 (374)
47 PRK12370 invasion protein regu 64.7 25 0.00055 30.3 6.5 44 37-87 356-401 (553)
48 TIGR02521 type_IV_pilW type IV 62.6 42 0.00091 23.1 6.3 8 76-83 153-160 (234)
49 PF09986 DUF2225: Uncharacteri 61.0 37 0.0008 26.2 6.3 51 34-91 140-198 (214)
50 KOG1155 Anaphase-promoting com 60.5 18 0.00038 32.3 4.8 44 36-86 449-494 (559)
51 PRK11788 tetratricopeptide rep 60.5 36 0.00079 26.7 6.3 47 35-88 196-244 (389)
52 PLN03088 SGT1, suppressor of 60.0 32 0.0007 28.1 6.1 48 34-88 17-66 (356)
53 PRK11189 lipoprotein NlpI; Pro 59.8 42 0.00091 26.4 6.6 32 52-87 96-127 (296)
54 PF07739 TipAS: TipAS antibiot 58.0 8.3 0.00018 25.9 2.0 58 28-86 53-115 (118)
55 PRK11189 lipoprotein NlpI; Pro 57.3 49 0.0011 26.0 6.5 46 36-88 115-162 (296)
56 COG1729 Uncharacterized protei 56.9 13 0.00029 30.1 3.3 30 53-86 177-206 (262)
57 PRK15363 pathogenicity island 56.6 38 0.00082 25.4 5.5 46 36-88 52-99 (157)
58 PF07721 TPR_4: Tetratricopept 56.1 15 0.00033 18.7 2.4 25 55-83 2-26 (26)
59 PRK10153 DNA-binding transcrip 54.1 54 0.0012 28.7 6.8 47 36-89 437-484 (517)
60 PRK12370 invasion protein regu 51.9 54 0.0012 28.3 6.4 48 35-89 320-369 (553)
61 KOG4626 O-linked N-acetylgluco 51.2 34 0.00073 31.9 5.2 43 37-86 338-382 (966)
62 TIGR00990 3a0801s09 mitochondr 50.6 57 0.0012 28.2 6.4 46 36-88 311-361 (615)
63 PRK11447 cellulose synthase su 49.2 58 0.0013 30.7 6.6 47 35-88 285-333 (1157)
64 TIGR02917 PEP_TPR_lipo putativ 49.1 59 0.0013 27.5 6.1 48 36-90 39-88 (899)
65 PRK11447 cellulose synthase su 48.8 57 0.0012 30.8 6.4 47 35-88 367-415 (1157)
66 PF11207 DUF2989: Protein of u 47.7 43 0.00092 26.3 4.7 48 37-89 124-171 (203)
67 TIGR00990 3a0801s09 mitochondr 47.6 74 0.0016 27.5 6.6 32 52-87 397-428 (615)
68 PRK02603 photosystem I assembl 46.4 1E+02 0.0023 21.8 6.5 34 51-88 32-65 (172)
69 PHA02053 hypothetical protein 44.4 82 0.0018 22.5 5.3 63 31-97 22-89 (115)
70 PF12688 TPR_5: Tetratrico pep 44.4 34 0.00074 24.1 3.4 31 56-90 3-33 (120)
71 PRK10370 formate-dependent nit 44.3 1.2E+02 0.0027 22.6 6.6 33 52-88 71-103 (198)
72 KOG2003 TPR repeat-containing 44.0 63 0.0014 29.3 5.6 46 36-86 541-586 (840)
73 PF08631 SPO22: Meiosis protei 43.7 59 0.0013 25.5 5.0 57 31-87 5-65 (278)
74 PF13429 TPR_15: Tetratricopep 42.1 49 0.0011 25.3 4.3 52 38-94 199-252 (280)
75 PF12645 HTH_16: Helix-turn-he 41.9 43 0.00094 21.3 3.3 21 45-65 3-23 (65)
76 TIGR02917 PEP_TPR_lipo putativ 38.3 1.1E+02 0.0025 25.8 6.2 15 73-87 852-866 (899)
77 TIGR03302 OM_YfiO outer membra 37.8 1.3E+02 0.0028 22.0 5.9 46 36-88 50-100 (235)
78 PLN03098 LPA1 LOW PSII ACCUMUL 35.7 58 0.0012 28.5 4.1 36 49-88 70-105 (453)
79 PF13429 TPR_15: Tetratricopep 35.2 47 0.001 25.3 3.2 26 36-64 163-190 (280)
80 PRK10866 outer membrane biogen 34.9 1.5E+02 0.0031 23.0 5.9 49 36-88 49-99 (243)
81 KOG2002 TPR-containing nuclear 34.7 43 0.00093 32.1 3.3 27 56-86 309-335 (1018)
82 PRK11788 tetratricopeptide rep 34.6 1.7E+02 0.0036 22.9 6.3 45 36-87 52-98 (389)
83 KOG1586 Protein required for f 34.4 65 0.0014 26.5 4.0 27 57-86 116-142 (288)
84 COG2956 Predicted N-acetylgluc 33.5 91 0.002 26.8 4.8 49 36-91 197-247 (389)
85 PRK09782 bacteriophage N4 rece 32.7 1.4E+02 0.003 28.4 6.4 30 53-86 676-705 (987)
86 TIGR03504 FimV_Cterm FimV C-te 32.6 76 0.0016 18.7 3.1 31 57-91 2-32 (44)
87 KOG3783 Uncharacterized conser 31.6 70 0.0015 28.7 4.0 35 53-90 489-523 (546)
88 KOG1125 TPR repeat-containing 31.1 2.2E+02 0.0047 25.9 6.9 53 27-86 402-458 (579)
89 PRK15174 Vi polysaccharide exp 30.4 1.7E+02 0.0038 25.9 6.3 47 34-87 91-139 (656)
90 PF14852 Fis1_TPR_N: Fis1 N-te 30.3 60 0.0013 18.3 2.3 33 54-87 1-33 (35)
91 PRK10803 tol-pal system protei 29.9 1.8E+02 0.0039 23.0 5.8 31 53-87 216-246 (263)
92 PRK14720 transcript cleavage f 29.8 1.1E+02 0.0023 29.1 5.1 46 36-87 133-178 (906)
93 TIGR00540 hemY_coli hemY prote 28.0 2E+02 0.0044 23.5 6.0 41 36-83 316-360 (409)
94 TIGR03302 OM_YfiO outer membra 27.8 2.4E+02 0.0053 20.5 5.9 28 54-85 203-230 (235)
95 PRK10747 putative protoheme IX 27.8 1.4E+02 0.003 24.5 5.0 35 52-90 326-360 (398)
96 TIGR00540 hemY_coli hemY prote 25.9 2.3E+02 0.0051 23.2 6.0 46 35-87 351-399 (409)
97 COG5010 TadD Flp pilus assembl 25.5 2.3E+02 0.0049 23.1 5.7 45 38-89 153-199 (257)
98 PF14561 TPR_20: Tetratricopep 24.5 1.6E+02 0.0035 19.5 4.0 37 48-88 16-52 (90)
99 KOG1126 DNA-binding cell divis 24.3 1E+02 0.0023 28.2 3.8 47 33-86 469-517 (638)
100 COG4383 Mu-like prophage prote 24.2 79 0.0017 27.8 2.9 35 27-65 32-66 (517)
101 PRK15331 chaperone protein Sic 24.1 1.5E+02 0.0033 22.4 4.2 33 51-87 102-134 (165)
102 PRK09782 bacteriophage N4 rece 24.0 2.6E+02 0.0056 26.6 6.5 30 53-86 642-671 (987)
103 KOG2002 TPR-containing nuclear 24.0 1.1E+02 0.0024 29.4 4.1 51 34-88 322-372 (1018)
104 PF10305 Fmp27_SW: RNA pol II 23.1 41 0.00089 23.1 0.9 13 63-75 87-99 (103)
105 KOG1155 Anaphase-promoting com 22.9 2E+02 0.0044 25.8 5.2 46 38-90 417-464 (559)
106 cd05804 StaR_like StaR_like; a 22.6 2.9E+02 0.0063 21.3 5.7 45 36-87 131-177 (355)
107 PRK15179 Vi polysaccharide bio 22.2 2.8E+02 0.0062 25.3 6.2 46 36-88 171-218 (694)
108 PRK14574 hmsH outer membrane p 21.7 1.6E+02 0.0035 27.4 4.6 45 37-88 86-132 (822)
109 PRK10049 pgaA outer membrane p 20.8 3E+02 0.0065 24.8 6.0 47 35-88 253-302 (765)
110 KOG1173 Anaphase-promoting com 20.7 2.4E+02 0.0053 25.7 5.3 47 36-89 472-520 (611)
111 PRK10747 putative protoheme IX 20.1 3.5E+02 0.0075 22.2 5.9 14 73-86 133-146 (398)
No 1
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=99.13 E-value=1e-10 Score=64.93 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
+.||+.||.||..|.|+++|..+|+.||++||++|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 368999999999999999999999999999999986
No 2
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.08 E-value=3e-10 Score=88.06 Aligned_cols=59 Identities=29% Similarity=0.418 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033594 36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK 97 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~ 97 (115)
..|..||. +++.++++.||++||.||..|.||++|+.+|++||++||++|+..+.+..+
T Consensus 172 ~~A~~~~~---~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~ 230 (292)
T COG0790 172 KKALYLYR---KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG 230 (292)
T ss_pred HhHHHHHH---HHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36899999 999999999999999999999999999999999999999999976666555
No 3
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=99.07 E-value=1.6e-10 Score=65.29 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=33.4
Q ss_pred HHHHHHHH--HHHHcCC-CCcCCHHHHHHHHHHHHhcCC
Q 033594 54 INMQVLVG--QMYFSGY-GVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 54 ~~Aq~~LG--~mY~~G~-Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
+.||++|| .||..|. |+++|+.+|++||++|+++||
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57999999 9999999 899999999999999999996
No 4
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.05 E-value=4.7e-10 Score=86.97 Aligned_cols=60 Identities=22% Similarity=0.260 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchh---hhccc
Q 033594 35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVW---KVGEK 97 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~---~~~~~ 97 (115)
...|..||+ ++++.|++.+|++||.||..|.||++|+.+|++||++||++|+..+ .+..+
T Consensus 93 ~~~A~~~~~---~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~ 155 (292)
T COG0790 93 KTKAADWYR---CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLG 155 (292)
T ss_pred HHHHHHHHH---HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 466899999 9999999999999999999999999999999999999999999987 65555
No 5
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.83 E-value=8.2e-09 Score=88.88 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033594 34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK 97 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~ 97 (115)
....|++||. .||+.|++.|+++|+.||..|.||++|..+|+.||++||++|++.+.+.++
T Consensus 343 d~~~A~~yy~---~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~ 403 (552)
T KOG1550|consen 343 DYRRAFEYYS---LAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLG 403 (552)
T ss_pred cHHHHHHHHH---HHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHH
Confidence 3457999999 999999999999999999999999999999999999999999877665544
No 6
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.52 E-value=3e-07 Score=79.30 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHHh-------cCCchhhhcccCC
Q 033594 35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSG-YGVARDAQKGRIWISRASR-------TRSSVWKVGEKHP 99 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G-~Gv~kD~~kA~~Wl~kAA~-------~G~~~~~~~~~~~ 99 (115)
...+..||+ .+|+.|+..||+.+|.||+.| .||.+|+++|+.||++|++ +|++.+....++.
T Consensus 228 ~~~a~~~~~---~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYR---EAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHH---HHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHH
Confidence 356899999 999999999999999999999 9999999999999999999 8988877777643
No 7
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=97.39 E-value=0.00093 Score=52.72 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
+.|.++-- ||++.+++.|+.++.+||..|.||++|..+|..+-.+|-+
T Consensus 185 dka~qfa~---kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 185 DKALQFAI---KACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred HHHHHHHH---HHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 34555555 9999999999999999999999999999999999888865
No 8
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=96.54 E-value=0.0037 Score=49.39 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------C--CCc----------CCHHHHHHHHHHHHhcCCchhhh
Q 033594 35 SDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSG--------Y--GVA----------RDAQKGRIWISRASRTRSSVWKV 94 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G--------~--Gv~----------kD~~kA~~Wl~kAA~~G~~~~~~ 94 (115)
...|.+++. ++++.++..|+|+|.-||..| . |-+ +|..+|+++-.+|++.+++-+-.
T Consensus 128 ~~Ka~~y~t---raCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCA 204 (248)
T KOG4014|consen 128 SEKAERYMT---RACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACA 204 (248)
T ss_pred cHHHHHHHH---HhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHh
Confidence 456899999 999999999999999999988 1 555 89999999999999999987655
Q ss_pred cccC
Q 033594 95 GEKH 98 (115)
Q Consensus 95 ~~~~ 98 (115)
+..|
T Consensus 205 N~Sr 208 (248)
T KOG4014|consen 205 NVSR 208 (248)
T ss_pred hHHH
Confidence 5443
No 9
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.03 E-value=0.14 Score=27.06 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.+.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 4678999999995 78999999999999864
No 10
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.90 E-value=0.23 Score=29.95 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|...|+ ++.... ++.+.+.||.+|. ...++.+|+.+|+++.+..
T Consensus 13 ~~~A~~~~~---~~l~~~P~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 13 YDEAIAAFE---QALKQDPDNPEAWYLLGRILY----QQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHH---HHHCCSTTHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH---HHHHHCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHC
Confidence 467888888 666554 8899999999999 4679999999999997643
No 11
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.65 E-value=0.42 Score=28.97 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 34 VSDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
..+.|..+|+ ++.+. .++.+.+++|.+|.. ..+++.+|+..|++|.+.
T Consensus 18 ~~~~A~~~~~---~ai~~~p~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 18 DYEEAIEYFE---KAIELDPNNAEAYYNLGLAYMK---LGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHH---HHHHHSTTHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHcCCCCHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHc
Confidence 3467888999 55544 588999999999985 113799999999999763
No 12
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.07 E-value=0.8 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.+.+++|.+|. ...++.+|+..|++|.+.
T Consensus 1 a~~~~~~g~~~~----~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYF----QLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HhCCchHHHHHHHHHHHH
Confidence 467899999999 478999999999999764
No 13
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.94 E-value=0.81 Score=28.41 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHH-HCCC-----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 35 SDCVKRWFRDTLKEA-KGGD-----INMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA-~~Gd-----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
.+.|..+|++.++-. ..|+ +.+.++||.+|.. ..|+++|+.+|++|.+
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 21 YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 456888888555442 2332 5677899999884 6689999999999975
No 14
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.15 E-value=0.97 Score=24.94 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 033594 56 MQVLVGQMYFSGYGVARDAQKGRIWISRAS 85 (115)
Q Consensus 56 Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA 85 (115)
|..+||.+|.. ..|+++|+.+|++|.
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 46789999995 679999999999965
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=88.18 E-value=2.9 Score=28.08 Aligned_cols=45 Identities=7% Similarity=-0.096 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 37 CVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 37 ~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.|..+|+ ++... .++...+.+|.+|.. ..++.+|+.||+++.+..
T Consensus 69 ~A~~~~~---~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYA---LAAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHH---HHHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence 3455555 33322 245666666666663 446666666666665543
No 16
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.59 E-value=1.4 Score=23.67 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
+.++.+||.+|.. ..++.+|..|++++.+
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 3578999999995 5799999999999975
No 17
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=87.38 E-value=0.67 Score=25.18 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHCCC
Q 033594 34 VSDCVKRWFRDTLKEAKGGD 53 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~Gd 53 (115)
....|++||+ +||++||
T Consensus 23 d~~~A~~~~~---~Aa~~g~ 39 (39)
T PF08238_consen 23 DYEKAFKWYE---KAAEQGH 39 (39)
T ss_dssp HHHHHHHHHH---HHHHTT-
T ss_pred cccchHHHHH---HHHHccC
Confidence 4778999999 9999986
No 18
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.15 E-value=0.81 Score=23.67 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+|+|++|.+|.. ..+..+|+..|++..++
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence 488999999996 46999999999987654
No 19
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.04 E-value=1.9 Score=25.81 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 33 VVSDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 33 ~~~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
...+.|...|+ ++.. -++..+.+.||.+|.. ..++.+|..++++.......
T Consensus 5 ~~~~~A~~~~~---~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 5 GDYDEAIELLE---KALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp THHHHHHHHHH---HHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGTT
T ss_pred cCHHHHHHHHH---HHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCcC
Confidence 34567889999 5544 3699999999999995 57999999999988765543
No 20
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.26 E-value=2.3 Score=22.31 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.+.+.+|.+|.. ..|+.+|...|+++.+.
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence 567899999996 66999999999999763
No 21
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.74 E-value=1.9 Score=20.24 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.+.+.+|.+|.. ..++.+|..+|+++.+.
T Consensus 2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLK----LGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence 356788888884 56899999999988754
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=82.06 E-value=5.7 Score=26.58 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
+.|..+|+ ++.. -.++.+.+.+|.+|.. ..++.+|+.+|+++......
T Consensus 34 ~~A~~~~~---~~~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 34 DEALKLFQ---LLAAYDPYNSRYWLGLAACCQM----LKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHHHHH---HHHHhCCCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCC
Confidence 55788888 5544 3578999999999984 56889999999999776543
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=80.49 E-value=8 Score=27.36 Aligned_cols=46 Identities=7% Similarity=-0.022 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|..+|+ ++.. -+++.+.++||.+|.. -.++.+|+..|++|.+..
T Consensus 75 ~~A~~~y~---~Al~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 75 TTAINFYG---HALMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHH---HHHhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 44667777 4444 4577888888887774 457778888888887643
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=80.35 E-value=7.6 Score=29.16 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
+.|..+|+ ++.+. .++.+.++||..+.. ..|+.+|+.+|+++.+...+
T Consensus 127 ~~A~~~l~---~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 127 PQTREMID---KALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHH---HHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence 44555665 44443 366777777777763 45777777777777665544
No 25
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=79.75 E-value=6.5 Score=22.38 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
...|..+|+ ++.+.. +..+.+.+|.+|.. ..++.+|+.+|+++....
T Consensus 16 ~~~A~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 16 YDEALEYYE---KALELDPDNADAYYNLAAAYYK----LGKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHH---HHHhcCCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC
Confidence 355777887 554433 44678888888875 467888888888887654
No 26
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=79.27 E-value=3.7 Score=23.30 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.+.||..|.. ..++++|+.+|+++.+..
T Consensus 2 ~~~~~la~~~~~----~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRR----LGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence 567889999884 569999999999998753
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=78.39 E-value=4.6 Score=24.89 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 55 NMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.++++||.+|.. ..++.+|+.+|++|...
T Consensus 6 ~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 6 NAYNNLARVYRE----LGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 577899999993 66999999999999854
No 28
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=77.94 E-value=8.2 Score=30.69 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.|+|+||.+|+ ..+|+..|+..|++...+
T Consensus 180 ~~A~y~LG~~y~----~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 180 PNANYWLGQLNY----NKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH
Confidence 579999999999 478999999999999864
No 29
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=76.33 E-value=16 Score=31.87 Aligned_cols=51 Identities=8% Similarity=-0.104 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHCC--CHH---HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhh
Q 033594 36 DCVKRWFRDTLKEAKGG--DIN---MQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWK 93 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~G--d~~---Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~ 93 (115)
+.|..+|+ ++.+.. +.. ++|+||.+|.. -.++++|+..|++|.+.++..+.
T Consensus 92 eEAIa~f~---rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALelsn~~f~ 147 (453)
T PLN03098 92 KDALAQFE---TALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRDYNLKFS 147 (453)
T ss_pred HHHHHHHH---HHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcchhHH
Confidence 56888998 766654 453 49999999995 56999999999999998766654
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=75.68 E-value=5.7 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
++...+.+|.+|.. ..++.+|+..|++|.+....
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~p~ 35 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELDPN 35 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Confidence 56788899999995 77999999999999986543
No 31
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=75.15 E-value=13 Score=26.58 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKGG-----DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~G-----d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|..+|+ ++.... ...+.+.||.+|.. ..++.+|+.+|++|....
T Consensus 51 ~~~A~~~~~---~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 51 YAEALENYE---EALKLEEDPNDRSYILYNMGIIYAS----NGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHHHHHHH---HHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 356788888 555332 24789999999885 458899999999998753
No 32
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=72.93 E-value=14 Score=30.21 Aligned_cols=46 Identities=7% Similarity=-0.053 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|..+|+ ++... .++.++++||.+|.. -.++..|+.+|++|.+..
T Consensus 53 ~eAl~~~~---~Al~l~P~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 53 TEAVADAN---KAIELDPSLAKAYLRKGTACMK----LEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHH---HHHHhCcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC
Confidence 45677777 55443 578899999988874 568899999999988765
No 33
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.45 E-value=4.5 Score=22.24 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=20.6
Q ss_pred HHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHH
Q 033594 47 KEAKG--GDINMQVLVGQMYFSGYGVARDAQKGR 78 (115)
Q Consensus 47 kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~ 78 (115)
|+.+. .++.+.++||.+|.. ..|+.+|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~----~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLN----QGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHH----CcCHHhhc
Confidence 55555 599999999999984 34666654
No 34
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=72.40 E-value=15 Score=27.63 Aligned_cols=46 Identities=7% Similarity=-0.033 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
..|+..|. ++... .|+.+.+++|++|+. -.|+..|+.-|+.|...-
T Consensus 86 ~~AI~aY~---~A~~L~~ddp~~~~~ag~c~L~----lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 GEAIYAYG---RAAQIKIDAPQAPWAAAECYLA----CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHH---HHHhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 34666666 55544 588888888888883 457778888888776644
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=69.94 E-value=25 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
..+.+.+|.+|.. ..++..|+.+|+++..
T Consensus 39 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 39 PNAHYWLGEAYYA----QGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHHHh----hccHHHHHHHHHHHHH
Confidence 4567777777663 4567777777777665
No 36
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=69.81 E-value=10 Score=23.87 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 033594 36 DCVKRWFRDTLKEAKGG-DINMQVLVGQMYFSGYGVARDAQKGRIWISR 83 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~G-d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~k 83 (115)
+.|..+|+.++...... +....+.||.+|.. ..++.+|+.++++
T Consensus 6 ~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 6 ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 45666666333333322 34455556777774 5677777777766
No 37
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=69.73 E-value=22 Score=25.14 Aligned_cols=45 Identities=9% Similarity=-0.009 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 36 DCVKRWFRDTLKEAKG--G---DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--G---d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.|..+|+ ++... . .+.+.++||.+|.. ..++.+|+..|++|...
T Consensus 52 ~~A~~~~~---~al~l~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 52 AEALQNYY---EAMRLEIDPYDRSYILYNIGLIHTS----NGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHH---HHHhccccchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 55778888 66533 2 23588999999994 67899999999999864
No 38
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=69.35 E-value=23 Score=22.47 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHC--C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKG--G---DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~--G---d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|..+|+ ++... + .+.+.+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 55 ~~~A~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 55 YADAAKAFL---AVVKKYPKSPKAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHH---HHHHHCCCCCcccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHC
Confidence 356888888 55442 2 36789999999984 678999999999998764
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=68.48 E-value=22 Score=25.03 Aligned_cols=46 Identities=4% Similarity=-0.073 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|..+|+ ++... .+..+.+.||.++.. ..++.+|+.+|++|.+..
T Consensus 41 ~~A~~~~~---~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 41 SRAVIDFS---WLVMAQPWSWRAHIALAGTWMM----LKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---HHHHcCCCcHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcC
Confidence 45778888 66655 588999999998884 668999999999999744
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.02 E-value=31 Score=23.84 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|..+|+ ++... .+..+.+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 48 ~~A~~~~~---~~l~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~ 95 (234)
T TIGR02521 48 EVAKENLD---KALEHDPDDYLAYLALALYYQQ----LGELEKAEDSFRRALTLN 95 (234)
T ss_pred HHHHHHHH---HHHHhCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence 45677777 54433 467788888888874 558888888888887653
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=67.76 E-value=9.8 Score=23.95 Aligned_cols=43 Identities=5% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHH
Q 033594 36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRA 84 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kA 84 (115)
..|..+|+. ......+....+.+|.+|.. -..+++|+..|++|
T Consensus 42 ~~A~~~~~~--~~~~~~~~~~~~l~a~~~~~----l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 42 EEAIELLQK--LKLDPSNPDIHYLLARCLLK----LGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHC--HTHHHCHHHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHhcC
Confidence 457777773 22334578999999999884 66899999999876
No 42
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=67.67 E-value=24 Score=21.13 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
.+.|..+++ ++... .++...+.+|.+|.. ..++.+|+..|+++.+....
T Consensus 11 ~~~A~~~~~---~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 11 YEEALEVLE---RALELDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHHHHH---HHHHhCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHCCC
Confidence 456777777 44444 588899999999994 67999999999999976643
No 43
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=67.44 E-value=12 Score=29.39 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHH-HHHCCC----HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 34 VSDCVKRWFRDTLK-EAKGGD----INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 34 ~~~~A~~wf~~~~k-AA~~Gd----~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
..+.|+.+|+..+. -.+.|+ +..+..+|.+|..-. .|+++|+.+|++|++.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAEL 144 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 34567777772222 123455 467889999998532 5999999999999873
No 44
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=67.19 E-value=7.5 Score=37.13 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchh
Q 033594 48 EAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVW 92 (115)
Q Consensus 48 AA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~ 92 (115)
|-+.||..|+|.||.||++ .-++.+|+++|.+|-.--|++.
T Consensus 961 A~esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnAIR 1001 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNAIR 1001 (1416)
T ss_pred HHhcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHH
Confidence 5567999999999999996 5588999999999977666653
No 45
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.05 E-value=11 Score=28.45 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 38 VKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 38 A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
|.+||. +|... ++...++.||.++.. ..|.-.|++||-+|.--
T Consensus 1 A~~~Y~---~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYR---KAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHH---HHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHSS
T ss_pred CHHHHH---HHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHhc
Confidence 568888 77765 466788999999986 46889999999998643
No 46
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=65.22 E-value=19 Score=30.62 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-----CCCCcCCHHHHHHHHHHHHhcCCch
Q 033594 34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFS-----GYGVARDAQKGRIWISRASRTRSSV 91 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~-----G~Gv~kD~~kA~~Wl~kAA~~G~~~ 91 (115)
..+.|..++..++.....-+++....+|.+|.. +..-.....+|+.||+++.+-....
T Consensus 197 dre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 197 DREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 456788999866667788899999999998863 2223445899999999999866544
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=64.72 E-value=25 Score=30.26 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 37 CVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 37 ~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.|..+|+ ++.+. .++.+.+.||.+|.. ..++++|+.+|++|.+.
T Consensus 356 ~A~~~~~---~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 356 VGSLLFK---QANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKL 401 (553)
T ss_pred HHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence 3445555 43333 245555666665553 33555666666665543
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=62.65 E-value=42 Score=23.13 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 033594 76 KGRIWISR 83 (115)
Q Consensus 76 kA~~Wl~k 83 (115)
+|..+|.+
T Consensus 153 ~A~~~~~~ 160 (234)
T TIGR02521 153 KAEKYLTR 160 (234)
T ss_pred HHHHHHHH
Confidence 33333333
No 49
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=61.04 E-value=37 Score=26.18 Aligned_cols=51 Identities=10% Similarity=0.280 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCch
Q 033594 34 VSDCVKRWFRDTLKEAKGG--------DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSV 91 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~G--------d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~ 91 (115)
....|..+|. ++-+.. ....+|.+|.++.. -.++++|..||.+....+...
T Consensus 140 fl~~Al~~y~---~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 140 FLRKALEFYE---EAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHH---HHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCCCC
Confidence 3456788888 655443 24677888888774 448899999999998766543
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.52 E-value=18 Score=32.27 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 36 DCVKRWFRDTLKEAKGGDI--NMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd~--~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
+.|+.+|+ ++...||+ .+.+.||.+|.. =+|.++|..+|+|-.+
T Consensus 449 ~eAiKCyk---rai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 449 EEAIKCYK---RAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHH---HHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence 34888999 99988888 889999999985 5688888888888765
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=60.45 E-value=36 Score=26.71 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|..+|+ ++.+ ..+..+.+.||.+|.. ..++.+|+.+|+++....
T Consensus 196 ~~~A~~~~~---~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 196 LDAARALLK---KALAADPQCVRASILLGDLALA----QGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHHHH---HHHhHCcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHC
Confidence 355778888 5443 3477889999999885 568999999999998754
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=60.04 E-value=32 Score=28.11 Aligned_cols=48 Identities=4% Similarity=-0.099 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 34 VSDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
..+.|...|+ ++... .++.+.+++|.+|.. ..++..|+..|++|....
T Consensus 17 ~~~~Ai~~~~---~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 17 DFALAVDLYT---QAIDLDPNNAELYADRAQANIK----LGNFTEAVADANKAIELD 66 (356)
T ss_pred CHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 4467888998 66555 578999999999985 569999999999998754
No 53
>PRK11189 lipoprotein NlpI; Provisional
Probab=59.82 E-value=42 Score=26.41 Aligned_cols=32 Identities=6% Similarity=-0.111 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 52 Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.++.+.+.||.+|. ...++.+|+..|++|.+.
T Consensus 96 ~~~~a~~~lg~~~~----~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 96 DMADAYNYLGIYLT----QAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred CCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHh
Confidence 35566666666665 244666666666666553
No 54
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=57.98 E-value=8.3 Score=25.85 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHH-----HHHHHHHHHHh
Q 033594 28 VPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQ-----KGRIWISRASR 86 (115)
Q Consensus 28 ~pl~~~~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~-----kA~~Wl~kAA~ 86 (115)
.|-...+...+.+|+..+. ..-.++......|+.||.........+. ....|+.+|.+
T Consensus 53 ~p~s~evq~l~~~~~~~~~-~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~fi~~Ai~ 115 (118)
T PF07739_consen 53 DPDSPEVQELAERWMELIN-QFTGGDPELLRGLAQMYVEDPRFAAMYDKKFGPGLAEFIEKAIE 115 (118)
T ss_dssp -TT-HHHHHHHHHHHHHHH-HSS---HHHHHHHHHHTTSTHHHHHHHG-GGSTTHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHcCHHHHhhccccCCHHHHHHHHHHHH
Confidence 4566677778889988333 4455789999999999975433222111 34566666653
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=57.25 E-value=49 Score=26.03 Aligned_cols=46 Identities=7% Similarity=-0.137 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|..+|+ ++.+. .+..+.+++|.+|.. ..++.+|+..|+++.+..
T Consensus 115 ~~A~~~~~---~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 115 DAAYEAFD---SVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 45777888 66554 578888999988874 347778888877777654
No 56
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.93 E-value=13 Score=30.12 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
-+.|+||||.+|+ ...|+..|.+.|....+
T Consensus 177 ~~nA~yWLGe~~y----~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 177 TPNAYYWLGESLY----AQGDYEDAAYIFARVVK 206 (262)
T ss_pred cchhHHHHHHHHH----hcccchHHHHHHHHHHH
Confidence 3689999999988 57799999999988876
No 57
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=56.62 E-value=38 Score=25.41 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|...|+ ..+. .-+....++||.++. ..+++.+|+.-|.+|....
T Consensus 52 ~~A~~~f~---~L~~~Dp~~~~y~~gLG~~~Q----~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 52 AGAARLFQ---LLTIYDAWSFDYWFRLGECCQ----AQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHH---HHHHhCcccHHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcC
Confidence 45777777 4444 457788889999998 5889999999999998654
No 58
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.12 E-value=15 Score=18.73 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 033594 55 NMQVLVGQMYFSGYGVARDAQKGRIWISR 83 (115)
Q Consensus 55 ~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~k 83 (115)
.+.+.||..|.. .-|+.+|..++++
T Consensus 2 ~a~~~la~~~~~----~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLA----QGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHhC
Confidence 467888888873 5588899888763
No 59
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=54.09 E-value=54 Score=28.65 Aligned_cols=47 Identities=21% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033594 36 DCVKRWFRDTLKEAKGG-DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~G-d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
+.|...|+ +|.... ++.+.+.+|.+|.. .-++.+|+.+|++|.+..-
T Consensus 437 ~~A~~~l~---rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 437 DEAYQAIN---KAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHH---HHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence 45677777 665554 56777788888773 5578888888888876553
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=51.91 E-value=54 Score=28.27 Aligned_cols=48 Identities=13% Similarity=0.008 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033594 35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
.+.|..+++ ++.+. .++.+...||.++.. ..++.+|..+|++|.+..-
T Consensus 320 ~~~A~~~~~---~Al~ldP~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~P 369 (553)
T PRK12370 320 MIKAKEHAI---KATELDHNNPQALGLLGLINTI----HSEYIVGSLLFKQANLLSP 369 (553)
T ss_pred HHHHHHHHH---HHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC
Confidence 356778888 76665 588999999999873 5689999999999987653
No 61
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.19 E-value=34 Score=31.94 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 37 CVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 37 ~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
.|.++|. ++-.. .+++|+++||.+|.. .-.++.|..+|++|.+
T Consensus 338 ea~~cYn---kaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 338 EAVDCYN---KALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHH---HHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHh
Confidence 4677887 55544 588888888888874 3356778888877754
No 62
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=50.56 E-value=57 Score=28.20 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKGG-----DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~G-----d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
..|..+|+ ++.+.+ .+.+.+.+|.+|.. ..++.+|+.+|++|.+..
T Consensus 311 ~~A~~~~~---~al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 311 EEAARAFE---KALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIELD 361 (615)
T ss_pred HHHHHHHH---HHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 45677787 666543 55678888888873 568888999998887653
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=49.22 E-value=58 Score=30.74 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|...|+ ++... .++.+.+.||.+|.. ..++++|+..|++|.+..
T Consensus 285 ~~~A~~~l~---~aL~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 285 GGKAIPELQ---QAVRANPKDSEALGALGQAYSQ----QGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 356888898 55554 689999999999984 569999999999998754
No 64
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=49.08 E-value=59 Score=27.52 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 36 DCVKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
+.|...|+ ++.+ -.++.+.+.||.+|.. ..++.+|..+|+++.+.+..
T Consensus 39 ~~A~~~~~---~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 88 (899)
T TIGR02917 39 KAAIIQLK---NALQKDPNDAEARFLLGKIYLA----LGDYAAAEKELRKALSLGYP 88 (899)
T ss_pred HhHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Confidence 45677777 4433 3588999999999995 56999999999999887643
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=48.80 E-value=57 Score=30.80 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|..+|+ ++... .++.+.+.||.+|.. ..++.+|+.+|++|.+..
T Consensus 367 ~~eA~~~~~---~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 367 LAQAERLYQ---QARQVDNTDSYAVLGLGDVAMA----RKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 355778888 55544 578899999999984 569999999999998743
No 66
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.70 E-value=43 Score=26.28 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033594 37 CVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 37 ~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
.|.+-|-+.-......+++-|+.||..|. .+|..|++..|.++.+.-+
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l~~ 171 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALELSN 171 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhcC
Confidence 35555551112233358899999999997 7899999999999987543
No 67
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=47.64 E-value=74 Score=27.52 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 52 Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.++.+.+.+|.+|.. ..++.+|+.+|++|.+.
T Consensus 397 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 397 EDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDL 428 (615)
T ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence 355666666666552 34566666666666543
No 68
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=46.40 E-value=1e+02 Score=21.83 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 51 GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 51 ~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
...+.+.+.+|..|. ...++.+|+.+|++|....
T Consensus 32 ~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~ 65 (172)
T PRK02603 32 AKEAFVYYRDGMSAQ----ADGEYAEALENYEEALKLE 65 (172)
T ss_pred hhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHh
Confidence 367778999999998 4679999999999998643
No 69
>PHA02053 hypothetical protein
Probab=44.41 E-value=82 Score=22.48 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=41.8
Q ss_pred chhhHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCchhhhccc
Q 033594 31 SEVVSDCVKRWFRDTLKEAKGGDINMQ-----VLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEK 97 (115)
Q Consensus 31 ~~~~~~~A~~wf~~~~kAA~~Gd~~Aq-----~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~~~~~~~ 97 (115)
.+.-..+..+-|- ...++.++..+ ..|-.+...|...|-|...| .||++|-++=.++++.+.|
T Consensus 22 ~e~kak~iIe~Ya---~k~~~~~ts~kllns~MilK~li~sGddmP~D~~ta-~~F~kayR~~~VIysr~lG 89 (115)
T PHA02053 22 TEPKAKAIIEKYA---SKTKQQDTSNKLLNSLMILKLLIASGDDMPIDANTA-TEFQKAYRSWGVIYSRSLG 89 (115)
T ss_pred CcHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHhcCeeeecCCC
Confidence 3334444444444 45555566555 44555667899999998666 6999999988888776655
No 70
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=44.40 E-value=34 Score=24.10 Aligned_cols=31 Identities=13% Similarity=-0.141 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 56 MQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 56 Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
++|++|.+|-. --+..+|+.+|++|.+.|-+
T Consensus 3 ~~~~~A~a~d~----~G~~~~Ai~~Y~~Al~~gL~ 33 (120)
T PF12688_consen 3 ALYELAWAHDS----LGREEEAIPLYRRALAAGLS 33 (120)
T ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Confidence 44555555442 22455555555555555533
No 71
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=44.28 E-value=1.2e+02 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 52 Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.|+.+.+.||.+|. ...++.+|+..|++|.+..
T Consensus 71 ~~~~~w~~Lg~~~~----~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 71 QNSEQWALLGEYYL----WRNDYDNALLAYRQALQLR 103 (198)
T ss_pred CCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC
Confidence 46677777777766 3556777777777776644
No 72
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.98 E-value=63 Score=29.29 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
+.|..+|- -+.+.-.++++-.+.|+.+|. .-.|+.+|++||-++-.
T Consensus 541 deald~f~-klh~il~nn~evl~qianiye----~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 541 DEALDCFL-KLHAILLNNAEVLVQIANIYE----LLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHH-HHHHHHHhhHHHHHHHHHHHH----HhhCHHHHHHHHHHhcc
Confidence 34555554 224667788888888888888 46788999999988753
No 73
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=43.71 E-value=59 Score=25.49 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCC--CcC-CHHHHHHHHHHHHhc
Q 033594 31 SEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYF-SGYG--VAR-DAQKGRIWISRASRT 87 (115)
Q Consensus 31 ~~~~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~-~G~G--v~k-D~~kA~~Wl~kAA~~ 87 (115)
.+...+.|..+|.++.......++.-.-.|+.+++ .|.. -.+ ++..|..|+++|.+-
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34455678888883333333567777777776544 4432 245 899999999999764
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=42.15 E-value=49 Score=25.25 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh--cCCchhhh
Q 033594 38 VKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASR--TRSSVWKV 94 (115)
Q Consensus 38 A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~--~G~~~~~~ 94 (115)
++..++...+.+ ..++.-...||.+|.. -.++++|+.||+++.+ ..++.+..
T Consensus 199 ~~~~l~~~~~~~-~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 199 AREALKRLLKAA-PDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp HHHHHHHHHHH--HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHhcc----cccccccccccccccccccccccccc
Confidence 444444322444 3455566677777773 3478889999988887 34455443
No 75
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=41.92 E-value=43 Score=21.26 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHH
Q 033594 45 TLKEAKGGDINMQVLVGQMYF 65 (115)
Q Consensus 45 ~~kAA~~Gd~~Aq~~LG~mY~ 65 (115)
++++|.+||+.|+..+=.+|.
T Consensus 3 vI~~A~~GD~~A~~~IL~~y~ 23 (65)
T PF12645_consen 3 VIKAAKQGDPEAMEEILKHYE 23 (65)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 568899999999999988876
No 76
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=38.32 E-value=1.1e+02 Score=25.81 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHhc
Q 033594 73 DAQKGRIWISRASRT 87 (115)
Q Consensus 73 D~~kA~~Wl~kAA~~ 87 (115)
++.+|+.+|++|.+.
T Consensus 852 ~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 852 EADRALPLLRKAVNI 866 (899)
T ss_pred CHHHHHHHHHHHHhh
Confidence 445555555555543
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=37.77 E-value=1.3e+02 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHC--CCH---HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDI---NMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~---~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|...|+ +.... .++ .+.+.+|.+|.. ..++.+|+..|+++.+..
T Consensus 50 ~~A~~~~~---~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 50 TEAIKYFE---ALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHH---HHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHC
Confidence 44677777 44433 233 678999999984 679999999999998754
No 78
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=35.75 E-value=58 Score=28.53 Aligned_cols=36 Identities=17% Similarity=0.061 Sum_probs=25.2
Q ss_pred HHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 49 AKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 49 A~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
++-.++.++++||..|.. ..++++|+.+|++|.+..
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELN 105 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence 344566677778877763 457888888888877654
No 79
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=35.24 E-value=47 Score=25.34 Aligned_cols=26 Identities=19% Similarity=0.159 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 033594 36 DCVKRWFRDTLKEAKGG--DINMQVLVGQMY 64 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY 64 (115)
+.|..+|+ ++.+.. |..+...|+.++
T Consensus 163 ~~A~~~~~---~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 163 DKALRDYR---KALELDPDDPDARNALAWLL 190 (280)
T ss_dssp HHHHHHHH---HHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHcCCCCHHHHHHHHHHH
Confidence 44555555 444432 344444444444
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=34.93 E-value=1.5e+02 Score=23.04 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKGGD--INMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd--~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|...|+.++...-.+. ..|+++||..|.. .+|+..|+.+|++..+.-
T Consensus 49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Confidence 446677774443332221 2455999999985 679999999999998753
No 81
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=34.67 E-value=43 Score=32.08 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 56 MQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 56 Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
++|++|.+|. ..-|+++|+.+|.+|..
T Consensus 309 s~Y~~gRs~H----a~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 309 SFYQLGRSYH----AQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHHH----hhccHHHHHHHHHHHHc
Confidence 4455555544 23345555555544443
No 82
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.56 E-value=1.7e+02 Score=22.93 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.|...|+ ++... .++.+.+.||.+|. ...++.+|+..++++...
T Consensus 52 ~~A~~~~~---~al~~~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~ 98 (389)
T PRK11788 52 DKAIDLFI---EMLKVDPETVELHLALGNLFR----RRGEVDRAIRIHQNLLSR 98 (389)
T ss_pred HHHHHHHH---HHHhcCcccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcC
Confidence 34666666 44433 34556666666665 244666666666666554
No 83
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.44 E-value=65 Score=26.53 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 57 QVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 57 q~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
...||.+|+. -.+|+++|+..|++|++
T Consensus 116 ~~~iaEiyEs---dl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 116 HIEIAEIYES---DLQDFEKAIAHYEQAAE 142 (288)
T ss_pred hhhHHHHHhh---hHHHHHHHHHHHHHHHH
Confidence 3578999986 23799999999999987
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=33.53 E-value=91 Score=26.77 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCch
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSV 91 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~ 91 (115)
++|+.|++ ||.+. .++.|-..||.++. ...|+++|++-|+...+|+...
T Consensus 197 d~A~~~l~---kAlqa~~~cvRAsi~lG~v~~----~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 197 DRARELLK---KALQADKKCVRASIILGRVEL----AKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHH---HHHhhCccceehhhhhhHHHH----hccchHHHHHHHHHHHHhChHH
Confidence 56788888 66544 47788888899877 3558999999999888887653
No 85
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=32.71 E-value=1.4e+02 Score=28.38 Aligned_cols=30 Identities=7% Similarity=-0.060 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
++.+.++||.+|. ...++..|+..|++|.+
T Consensus 676 ~~~a~~nLA~al~----~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 676 DPALIRQLAYVNQ----RLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHH----HCCCHHHHHHHHHHHHh
Confidence 5555555555554 23355555555555543
No 86
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.63 E-value=76 Score=18.72 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCch
Q 033594 57 QVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSV 91 (115)
Q Consensus 57 q~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~~ 91 (115)
.++||..|.. --|.+.|+.+++.-...|+..
T Consensus 2 kLdLA~ayie----~Gd~e~Ar~lL~evl~~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIE----MGDLEGARELLEEVIEEGDEA 32 (44)
T ss_pred chHHHHHHHH----cCChHHHHHHHHHHHHcCCHH
Confidence 4788888884 348999999999999888754
No 87
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=70 Score=28.69 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
-|.|.|.||.+|..=.| -+.++..|+.+|-+.+..
T Consensus 489 ~PfA~YElA~l~~~~~g---~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 489 VPFALYELALLYWDLGG---GLKEARALLLKAREYASD 523 (546)
T ss_pred ccHHHHHHHHHHHhccc---ChHHHHHHHHHHHhhccc
Confidence 46899999999997666 789999999999887744
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.14 E-value=2.2e+02 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 27 RVPLSEVVSDCVKRWFRDTLKEAKG-G---DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 27 ~~pl~~~~~~~A~~wf~~~~kAA~~-G---d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
..++.........+.|- .+|.+ + |++-|.-||++|. ..+++.+|+.-|+.|..
T Consensus 402 ~s~~~~~~l~~i~~~fL---eaa~~~~~~~DpdvQ~~LGVLy~----ls~efdraiDcf~~AL~ 458 (579)
T KOG1125|consen 402 KSFLDSSHLAHIQELFL---EAARQLPTKIDPDVQSGLGVLYN----LSGEFDRAVDCFEAALQ 458 (579)
T ss_pred cCCCCHHHHHHHHHHHH---HHHHhCCCCCChhHHhhhHHHHh----cchHHHHHHHHHHHHHh
Confidence 34444444455555665 55554 3 7899999999998 68899999999998875
No 89
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=30.43 E-value=1.7e+02 Score=25.90 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 34 VSDCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
..+.|...|+ ++... +++.+.+.||.+|.. ..++.+|+..|++|...
T Consensus 91 ~~~~A~~~l~---~~l~~~P~~~~a~~~la~~l~~----~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 91 QPDAVLQVVN---KLLAVNVCQPEDVLLVASVLLK----SKQYATVADLAEQAWLA 139 (656)
T ss_pred CHHHHHHHHH---HHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 3445666666 44433 567777777777764 45777777777777663
No 90
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=30.31 E-value=60 Score=18.33 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
++++|++|.++..-. .+.|..+++..++...+.
T Consensus 1 ~qt~FnyAw~Lv~S~-~~~d~~~Gi~lLe~l~~~ 33 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSN-NREDQQEGIALLEELYRD 33 (35)
T ss_dssp -HHHHHHHHHHHHSS-SHHHHHHHHHHHHHHCCC
T ss_pred CcchhHHHHHHhcCC-CHHHHHHHHHHHHHHHhc
Confidence 367889888877644 477889999888876543
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.88 E-value=1.8e+02 Score=23.03 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.++|.+.||.+|.. ..|..+|+..|++..+.
T Consensus 216 ~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 216 AADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred hhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 57889999999974 45999999999988765
No 92
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=29.77 E-value=1.1e+02 Score=29.11 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 36 DCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.+...|+.+++.- -.|+.+..+||..|.. . |+++|..++++|...
T Consensus 133 ~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae----~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 133 KKLKGVWERLVKAD-RDNPEIVKKLATSYEE----E-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHH----h-hHHHHHHHHHHHHHH
Confidence 34566666333322 5689999999999985 3 999999999999765
No 93
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=28.00 E-value=2e+02 Score=23.53 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHC--CCH--HHHHHHHHHHHcCCCCcCCHHHHHHHHHH
Q 033594 36 DCVKRWFRDTLKEAKG--GDI--NMQVLVGQMYFSGYGVARDAQKGRIWISR 83 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~--~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~k 83 (115)
..+...++ ++-+. +++ .....||.+|.. .+++.+|+.+|++
T Consensus 316 ~~~~~~~e---~~lk~~p~~~~~~ll~sLg~l~~~----~~~~~~A~~~le~ 360 (409)
T TIGR00540 316 EKLEKLIE---KQAKNVDDKPKCCINRALGQLLMK----HGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHH---HHHHhCCCChhHHHHHHHHHHHHH----cccHHHHHHHHHH
Confidence 34455555 43333 677 666688999873 6789999999994
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=27.79 E-value=2.4e+02 Score=20.53 Aligned_cols=28 Identities=4% Similarity=-0.146 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHH
Q 033594 54 INMQVLVGQMYFSGYGVARDAQKGRIWISRAS 85 (115)
Q Consensus 54 ~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA 85 (115)
+.+.+.+|..|.. -.++.+|..+++...
T Consensus 203 ~~a~~~l~~~~~~----lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 203 EEALARLVEAYLK----LGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 3455555555553 335555555555443
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.79 E-value=1.4e+02 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 52 GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 52 Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
.|+...+.+|.++. ..++..+|+.+|+++.+..-.
T Consensus 326 ~~~~l~l~lgrl~~----~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 326 DTPLLWSTLGQLLM----KHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred CCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcCCC
Confidence 67888899999988 477899999999999887543
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=25.90 E-value=2.3e+02 Score=23.19 Aligned_cols=46 Identities=13% Similarity=-0.000 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHH-H--HCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 35 SDCVKRWFRDTLKE-A--KGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 35 ~~~A~~wf~~~~kA-A--~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
.+.|+.+|+ ++ + ..-+......||.+|.. ..+..+|...|+++...
T Consensus 351 ~~~A~~~le---~a~a~~~~p~~~~~~~La~ll~~----~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 351 FIEAADAFK---NVAACKEQLDANDLAMAADAFDQ----AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHH---HhHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 456888898 52 2 34566677799999984 56899999999987543
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=25.54 E-value=2.3e+02 Score=23.09 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033594 38 VKRWFRDTLKEAK--GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 38 A~~wf~~~~kAA~--~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
|..-|. |+.+ .+++....|||..|. +..|++.|..++..|..++.
T Consensus 153 Ar~ay~---qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 153 ARRAYR---QALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHH---HHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence 555555 4433 368888999999888 67899999999999987765
No 98
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=24.49 E-value=1.6e+02 Score=19.49 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 48 EAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 48 AA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+++-+|..+.|.||..|. ...+++.|+.-|-....+.
T Consensus 16 a~~P~D~~ar~~lA~~~~----~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 16 AANPDDLDARYALADALL----AAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHSTT-HHHHHHHHHHHH----HTT-HHHHHHHHHHHHCC-
T ss_pred HcCCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC
Confidence 456679999999999998 4678999998888877653
No 99
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.32 E-value=1e+02 Score=28.15 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 33 VVSDCVKRWFRDTLKEAKGG--DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 33 ~~~~~A~~wf~~~~kAA~~G--d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
...+.|+.+|+ +|-... |-.|.|-||.+|+. ..-++.|...|++|.+
T Consensus 469 ee~d~a~~~fr---~Al~~~~rhYnAwYGlG~vy~K----qek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 469 EEFDKAMKSFR---KALGVDPRHYNAWYGLGTVYLK----QEKLEFAEFHFQKAVE 517 (638)
T ss_pred HHHHhHHHHHH---hhhcCCchhhHHHHhhhhheec----cchhhHHHHHHHhhhc
Confidence 34466777777 555443 66777777777764 2234455555555544
No 100
>COG4383 Mu-like prophage protein gp29 [Function unknown]
Probab=24.17 E-value=79 Score=27.75 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=28.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 033594 27 RVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYF 65 (115)
Q Consensus 27 ~~pl~~~~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~ 65 (115)
--|-..+.++++..+|+ +|++||..||..|..-.+
T Consensus 32 eHPssgiTP~k~~~il~----~AErGDl~AQseL~aDiE 66 (517)
T COG4383 32 EHPSSGITPQKAAAILE----AAERGDLRAQSELFADIE 66 (517)
T ss_pred cCCccCCCHHHHHHHHH----hhhccchhhHHHHHhhhh
Confidence 34556667788888886 999999999999977655
No 101
>PRK15331 chaperone protein SicA; Provisional
Probab=24.14 E-value=1.5e+02 Score=22.43 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 51 GGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 51 ~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
..|+...|..|+||+ .-.|..+|+.-|+.+.++
T Consensus 102 ~~dp~p~f~agqC~l----~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 KNDYRPVFFTGQCQL----LMRKAAKARQCFELVNER 134 (165)
T ss_pred cCCCCccchHHHHHH----HhCCHHHHHHHHHHHHhC
Confidence 468888888888888 366888888888888773
No 102
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=24.01 E-value=2.6e+02 Score=26.65 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHh
Q 033594 53 DINMQVLVGQMYFSGYGVARDAQKGRIWISRASR 86 (115)
Q Consensus 53 d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~ 86 (115)
++.+.++||.++.. ..++++|+..|++|.+
T Consensus 642 ~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 642 NSNYQAALGYALWD----SGDIAQSREMLERAHK 671 (987)
T ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 45555555554442 2345555555555554
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=24.01 E-value=1.1e+02 Score=29.40 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 34 VSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 34 ~~~~A~~wf~~~~kAA~~Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
..+.|+.+|.+.++++..+...+.+-||+||.+ .-|++.+..-|++-..+.
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHhC
Confidence 345677788866666666678888888888885 557888888887776543
No 104
>PF10305 Fmp27_SW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019415 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region within FMP27 that contains characteristic SW and GKG sequence motifs.
Probab=23.09 E-value=41 Score=23.14 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=11.1
Q ss_pred HHHcCCCCcCCHH
Q 033594 63 MYFSGYGVARDAQ 75 (115)
Q Consensus 63 mY~~G~Gv~kD~~ 75 (115)
+|..|.|+|+|.+
T Consensus 87 Lh~~GkG~PkDt~ 99 (103)
T PF10305_consen 87 LHDVGKGVPKDTK 99 (103)
T ss_pred HHHhCCCCCCCcc
Confidence 5889999999875
No 105
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=2e+02 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCCc
Q 033594 38 VKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSS 90 (115)
Q Consensus 38 A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~~ 90 (115)
|.++|+ +|.+. .|..--..||.||.. --.+..|++-|++|..-|++
T Consensus 417 aLyYfq---kA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 417 ALYYFQ---KALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHH---HHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhcccc
Confidence 344555 44443 344445555555542 22445555566666555544
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=22.57 E-value=2.9e+02 Score=21.31 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhc
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRT 87 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~ 87 (115)
+.|...|+ ++.+. .++.+.+.||.+|.. ..++++|+.+|+++...
T Consensus 131 ~~A~~~~~---~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 131 DRAEEAAR---RALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHH---HHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhc
Confidence 34566666 33332 345667777777663 34677777777776653
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.16 E-value=2.8e+02 Score=25.29 Aligned_cols=46 Identities=11% Similarity=-0.068 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
+.|...|+ +++.+ +++.++..+|..+.. --+.+.|..-|++|.+.-
T Consensus 171 ~~A~~~y~---~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 171 EQADACFE---RLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHH---HHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Confidence 45667777 55533 356777777777663 336677777777776543
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=21.72 E-value=1.6e+02 Score=27.42 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHH--HHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 37 CVKRWFRDTLKEAKGGDINMQVLV--GQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 37 ~A~~wf~~~~kAA~~Gd~~Aq~~L--G~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.|..+++ ++....+...+..+ |.+|. ..+++.+|+.+|+++.+..
T Consensus 86 ~A~~~~e---ka~~p~n~~~~~llalA~ly~----~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 86 EVIDVYE---RYQSSMNISSRGLASAARAYR----NEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHHH---HhccCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhC
Confidence 3455555 44432333333333 44555 2455666666666665543
No 109
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=20.76 E-value=3e+02 Score=24.84 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcC
Q 033594 35 SDCVKRWFRDTLKEAKGG---DINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTR 88 (115)
Q Consensus 35 ~~~A~~wf~~~~kAA~~G---d~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G 88 (115)
.+.|+..|+ +....+ -..+...+|.+|+ -..++++|+.+|+++....
T Consensus 253 ~~eA~~~~~---~ll~~~~~~P~~a~~~la~~yl----~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 253 YKDVISEYQ---RLKAEGQIIPPWAQRWVASAYL----KLHQPEKAQSILTELFYHP 302 (765)
T ss_pred HHHHHHHHH---HhhccCCCCCHHHHHHHHHHHH----hcCCcHHHHHHHHHHhhcC
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=2.4e+02 Score=25.71 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHHhcCC
Q 033594 36 DCVKRWFRDTLKEAKG--GDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRS 89 (115)
Q Consensus 36 ~~A~~wf~~~~kAA~~--Gd~~Aq~~LG~mY~~G~Gv~kD~~kA~~Wl~kAA~~G~ 89 (115)
..|+.+|+ ++-.. .++....-+|.+|. +-.|+.+|+..|.||.....
T Consensus 472 ~eAI~~~q---~aL~l~~k~~~~~asig~iy~----llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 472 EEAIDYYQ---KALLLSPKDASTHASIGYIYH----LLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHH---HHHHcCCCchhHHHHHHHHHH----HhcChHHHHHHHHHHHhcCC
Confidence 45788898 76655 47888889999998 67899999999999976543
No 111
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.15 E-value=3.5e+02 Score=22.18 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHh
Q 033594 73 DAQKGRIWISRASR 86 (115)
Q Consensus 73 D~~kA~~Wl~kAA~ 86 (115)
|+..|..||++|++
T Consensus 133 ~~~~A~~~l~~A~~ 146 (398)
T PRK10747 133 DEARANQHLERAAE 146 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 55556666666554
Done!