Query 033597
Match_columns 115
No_of_seqs 116 out of 697
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3djh_A Macrophage migration in 100.0 1.3E-44 4.4E-49 226.8 12.9 113 2-115 1-113 (114)
2 4dh4_A MIF; trimer, isomerase; 100.0 1.7E-44 5.9E-49 226.1 12.7 114 2-115 1-114 (114)
3 3t5s_A Gilaa.00834.A, macropha 100.0 2.9E-44 9.8E-49 231.0 10.8 114 1-115 22-135 (135)
4 3kan_A D-dopachrome tautomeras 100.0 5E-44 1.7E-48 225.0 11.5 113 2-115 1-114 (117)
5 3fwu_A Macrophage migration in 100.0 1E-43 3.5E-48 227.9 12.2 113 1-115 21-133 (133)
6 3fwt_A Macrophage migration in 100.0 2.2E-43 7.5E-48 226.4 12.8 113 1-115 21-133 (133)
7 1uiz_A MIF, macrophage migrati 100.0 3.3E-40 1.1E-44 206.8 13.1 114 1-115 1-114 (115)
8 2xcz_A Possible ATLS1-like lig 100.0 7.2E-40 2.5E-44 205.2 13.6 114 1-115 1-114 (115)
9 1hfo_A Migration inhibitory fa 100.0 2.1E-39 7E-44 202.5 12.9 113 2-115 1-113 (113)
10 2os5_A Acemif; macrophage migr 100.0 2E-39 6.9E-44 204.4 11.3 114 1-115 1-114 (119)
11 2wkb_A Macrophage migration in 100.0 1.2E-38 4.1E-43 202.4 12.3 114 2-115 1-114 (125)
12 3b64_A Macrophage migration in 100.0 1.8E-38 6.2E-43 198.1 12.4 111 2-115 1-112 (112)
13 2aal_A Malonate semialdehyde d 100.0 9.3E-33 3.2E-37 176.4 14.1 114 1-115 1-122 (131)
14 1mww_A Hypothetical protein HI 100.0 5.4E-30 1.9E-34 163.0 10.6 112 4-115 2-116 (128)
15 3n4h_A Putative tautomerase; C 99.9 2.6E-25 9E-30 144.5 11.5 113 3-115 2-119 (148)
16 3mlc_A FG41 malonate semialdeh 99.9 1.2E-22 4.1E-27 130.3 13.2 112 2-114 1-120 (136)
17 3c6v_A Probable tautomerase/de 99.9 1.6E-21 5.3E-26 128.2 11.1 113 1-114 22-140 (161)
18 1u9d_A Hypothetical protein VC 99.8 2.7E-18 9.2E-23 107.5 10.8 107 1-115 16-122 (122)
19 3mf7_A CIS-3-chloroacrylic aci 99.8 9.4E-18 3.2E-22 108.9 10.5 110 5-114 4-118 (149)
20 2opa_A Probable tautomerase YW 99.7 2.3E-17 7.8E-22 91.7 5.9 56 60-115 2-57 (61)
21 1otf_A 4-oxalocrotonate tautom 99.7 4E-17 1.4E-21 90.9 6.1 56 60-115 2-57 (62)
22 3abf_A 4-oxalocrotonate tautom 99.7 8.7E-17 3E-21 90.1 5.9 57 59-115 2-58 (64)
23 2x4k_A 4-oxalocrotonate tautom 99.6 8.6E-16 2.9E-20 85.4 6.1 58 58-115 3-60 (63)
24 3m21_A Probable tautomerase HP 99.6 1.5E-15 5.2E-20 86.0 6.8 55 60-114 2-59 (67)
25 3m20_A 4-oxalocrotonate tautom 99.6 1.2E-15 4.1E-20 85.2 6.2 55 60-115 2-56 (62)
26 3ry0_A Putative tautomerase; o 99.6 3.6E-15 1.2E-19 83.9 6.1 55 60-114 2-56 (65)
27 3mb2_A 4-oxalocrotonate tautom 99.6 5E-15 1.7E-19 85.0 6.6 57 59-115 2-58 (72)
28 3ej9_A Alpha-subunit of trans- 99.6 5.7E-15 1.9E-19 85.7 6.1 57 59-115 2-58 (76)
29 3e6q_A Putative 5-carboxymethy 99.5 2E-12 7E-17 83.4 11.9 111 1-111 22-138 (146)
30 1otg_A 5-carboxymethyl-2-hydro 99.4 9E-12 3.1E-16 78.5 10.6 110 2-111 1-118 (125)
31 3abf_A 4-oxalocrotonate tautom 99.4 9.4E-13 3.2E-17 73.4 5.3 55 1-55 1-57 (64)
32 3ej9_B Beta-subunit of trans-3 99.3 3.1E-12 1.1E-16 71.3 6.0 54 60-113 2-55 (70)
33 1gyx_A YDCE, B1461, hypothetic 99.3 1.7E-12 5.8E-17 75.0 5.0 51 60-110 2-53 (76)
34 2x4k_A 4-oxalocrotonate tautom 99.2 1.7E-11 5.7E-16 67.8 5.4 55 1-55 3-59 (63)
35 3mb2_A 4-oxalocrotonate tautom 99.1 1.5E-10 5E-15 66.1 5.8 55 1-55 1-57 (72)
36 3ej9_A Alpha-subunit of trans- 99.0 1.7E-09 5.7E-14 62.4 5.9 55 1-55 1-57 (76)
37 3n4h_A Putative tautomerase; C 98.8 8.9E-09 3.1E-13 66.2 6.0 55 60-114 2-57 (148)
38 3m20_A 4-oxalocrotonate tautom 98.8 2.2E-08 7.6E-13 55.3 6.7 53 2-55 1-55 (62)
39 2aal_A Malonate semialdehyde d 98.8 3.2E-08 1.1E-12 62.3 7.4 54 59-112 2-55 (131)
40 3m21_A Probable tautomerase HP 98.7 5.2E-08 1.8E-12 54.6 6.4 54 2-55 1-59 (67)
41 3mlc_A FG41 malonate semialdeh 98.7 4.3E-08 1.5E-12 62.4 6.6 53 60-112 2-54 (136)
42 3mb2_B 4-oxalocrotonate tautom 98.7 7.2E-08 2.5E-12 53.8 6.3 47 61-107 3-51 (72)
43 3c6v_A Probable tautomerase/de 98.7 7.7E-08 2.6E-12 62.9 6.9 58 56-114 20-78 (161)
44 3ry0_A Putative tautomerase; o 98.7 6.1E-08 2.1E-12 53.9 5.6 54 2-55 1-56 (65)
45 2opa_A Probable tautomerase YW 98.6 7.1E-08 2.4E-12 52.7 5.6 54 2-55 1-56 (61)
46 1otf_A 4-oxalocrotonate tautom 98.6 1.4E-07 4.9E-12 51.6 5.9 54 2-55 1-56 (62)
47 3mf7_A CIS-3-chloroacrylic aci 98.6 2.3E-07 7.9E-12 59.9 7.1 52 62-113 4-56 (149)
48 1mww_A Hypothetical protein HI 98.5 6E-08 2.1E-12 60.8 3.5 52 61-112 2-53 (128)
49 3ej9_B Beta-subunit of trans-3 98.3 2.6E-06 8.8E-11 47.4 5.7 54 2-55 1-56 (70)
50 2wkb_A Macrophage migration in 98.3 2.8E-06 9.5E-11 53.0 6.4 55 1-55 57-113 (125)
51 2xcz_A Possible ATLS1-like lig 98.2 5.3E-06 1.8E-10 50.8 6.4 53 59-114 2-54 (115)
52 1hfo_A Migration inhibitory fa 98.2 5.4E-06 1.8E-10 50.6 6.0 54 1-54 56-111 (113)
53 3b64_A Macrophage migration in 98.2 5.6E-06 1.9E-10 50.5 6.0 54 1-54 57-110 (112)
54 1gyx_A YDCE, B1461, hypothetic 98.1 6.4E-06 2.2E-10 47.0 5.6 45 2-46 1-46 (76)
55 1uiz_A MIF, macrophage migrati 98.1 9.7E-06 3.3E-10 49.6 5.9 55 1-55 57-113 (115)
56 2os5_A Acemif; macrophage migr 98.0 1.6E-05 5.3E-10 49.1 5.9 55 1-55 57-113 (119)
57 1u9d_A Hypothetical protein VC 97.9 1.6E-05 5.6E-10 49.5 5.2 52 1-54 67-120 (122)
58 3fwt_A Macrophage migration in 97.6 0.00032 1.1E-08 44.1 7.1 58 55-114 18-75 (133)
59 3t5s_A Gilaa.00834.A, macropha 97.6 0.00017 5.7E-09 45.6 5.7 53 3-55 80-134 (135)
60 3fwu_A Macrophage migration in 97.5 0.00025 8.4E-09 44.7 6.1 52 3-54 80-131 (133)
61 4dh4_A MIF; trimer, isomerase; 97.5 0.00016 5.4E-09 44.2 4.8 52 3-54 59-112 (114)
62 3djh_A Macrophage migration in 97.3 0.00074 2.5E-08 41.1 6.1 53 3-55 58-112 (114)
63 3mb2_B 4-oxalocrotonate tautom 96.9 0.0038 1.3E-07 34.8 5.6 44 2-45 1-46 (72)
64 3kan_A D-dopachrome tautomeras 96.4 0.0068 2.3E-07 37.1 5.2 53 3-55 58-113 (117)
65 1otg_A 5-carboxymethyl-2-hydro 96.3 0.0032 1.1E-07 39.0 3.3 45 1-45 60-108 (125)
66 2y9j_Y Lipoprotein PRGK, prote 90.3 1.1 3.7E-05 29.1 6.4 82 17-102 82-169 (170)
67 1n91_A ORF, hypothetical prote 90.3 1.7 5.7E-05 26.2 6.6 57 38-99 16-73 (108)
68 3e6q_A Putative 5-carboxymethy 89.7 0.48 1.6E-05 30.0 4.1 43 3-45 84-129 (146)
69 3lax_A Phenylacetate-coenzyme 80.0 2.1 7.1E-05 24.9 3.5 42 53-94 42-83 (109)
70 1yfs_A Alanyl-tRNA synthetase; 78.3 1.9 6.5E-05 32.4 3.4 31 73-103 103-133 (465)
71 3hrd_B Nicotinate dehydrogenas 74.4 2.9 9.9E-05 29.8 3.4 37 77-113 49-87 (330)
72 1wh3_A 59 kDa 2'-5'-oligoadeny 73.1 4 0.00014 22.6 3.3 24 78-101 30-53 (87)
73 1jwq_A N-acetylmuramoyl-L-alan 70.7 18 0.00062 23.2 8.9 71 17-91 101-178 (179)
74 1oey_A P67-PHOX, neutrophil cy 69.7 4.2 0.00014 23.2 2.8 31 79-109 27-57 (83)
75 3gxs_A Phenylacetate-coenzyme 69.0 14 0.00048 21.3 5.8 69 23-102 18-88 (109)
76 3lxy_A 4-hydroxythreonine-4-ph 66.7 23 0.00079 25.4 6.7 69 25-99 141-210 (334)
77 3hy0_A Alanyl-tRNA synthetase; 65.4 6.2 0.00021 29.4 3.6 29 74-102 103-133 (441)
78 1t0a_A 2C-methyl-D-erythritol 64.6 5 0.00017 25.7 2.6 35 76-112 109-143 (159)
79 2pmp_A 2-C-methyl-D-erythritol 63.8 5.2 0.00018 25.7 2.6 35 76-112 110-144 (160)
80 3n3k_B Ubiquitin; hydrolase, p 63.2 8.2 0.00028 21.0 3.2 26 77-102 25-50 (85)
81 1gx1_A 2-C-methyl-D-erythritol 63.0 5.5 0.00019 25.6 2.6 35 76-112 108-142 (160)
82 3re3_A 2-C-methyl-D-erythritol 62.2 5.6 0.00019 25.6 2.5 89 18-112 44-147 (162)
83 3a9j_A Ubiquitin; protein comp 61.3 9.6 0.00033 20.1 3.2 24 78-101 23-46 (76)
84 3f0d_A 2-C-methyl-D-erythritol 60.6 6.4 0.00022 25.8 2.6 34 77-112 131-164 (183)
85 1yxo_A 4-hydroxythreonine-4-ph 60.6 29 0.001 24.8 6.3 70 24-99 135-205 (328)
86 1ndd_A NEDD8, protein (ubiquit 60.1 10 0.00036 19.9 3.2 24 78-101 23-46 (76)
87 3mtn_B UBA80, ubcep1, ubiquiti 59.5 9.1 0.00031 20.7 2.9 24 78-101 26-49 (85)
88 2ojr_A Ubiquitin; lanthide-bin 59.3 5.7 0.0002 23.3 2.1 25 77-101 57-81 (111)
89 3k13_A 5-methyltetrahydrofolat 59.0 14 0.00047 26.0 4.3 41 58-98 134-177 (300)
90 1wxv_A BAG-family molecular ch 58.2 13 0.00044 20.8 3.5 25 77-101 33-57 (92)
91 2hi1_A 4-hydroxythreonine-4-ph 57.4 33 0.0011 24.5 6.1 69 24-99 142-211 (330)
92 2kd0_A LRR repeats and ubiquit 57.3 14 0.00048 20.5 3.5 24 78-101 34-57 (85)
93 2dzi_A Ubiquitin-like protein 56.8 15 0.0005 19.7 3.5 24 78-101 30-53 (81)
94 1wy8_A NP95-like ring finger p 56.0 16 0.00056 20.0 3.7 24 78-101 32-55 (89)
95 2w9j_A Signal recognition part 55.0 19 0.00066 20.7 3.8 72 17-89 5-82 (91)
96 1yj7_A ESCJ; mixed alpha/beta, 54.8 39 0.0013 21.6 7.0 78 19-105 86-168 (171)
97 3plu_A Ubiquitin-like modifier 54.8 12 0.0004 21.8 2.9 47 55-101 18-67 (93)
98 2faz_A Ubiquitin-like containi 54.5 15 0.0005 19.6 3.2 24 78-101 27-50 (78)
99 3lhe_A GNTR family transcripti 54.2 32 0.0011 20.5 7.2 76 26-105 23-99 (143)
100 2kjr_A CG11242; UBL, ubiquitin 54.1 23 0.00078 20.3 4.1 26 77-102 39-64 (95)
101 3b6n_A 2-C-methyl-D-erythritol 53.9 12 0.0004 24.6 3.0 89 18-112 66-169 (187)
102 1rm6_A 4-hydroxybenzoyl-COA re 53.6 11 0.00038 29.9 3.4 37 77-113 485-523 (769)
103 2bwf_A Ubiquitin-like protein 53.6 15 0.00053 19.4 3.2 24 78-101 26-49 (77)
104 1sif_A Ubiquitin; hydrophobic 53.5 13 0.00044 20.7 2.9 25 77-101 31-55 (88)
105 2kan_A Uncharacterized protein 53.1 18 0.00062 20.5 3.6 24 78-101 37-60 (94)
106 3k9o_B Ubiquitin, UBB+1; E2-25 51.8 16 0.00055 20.4 3.2 24 78-101 24-47 (96)
107 3phx_B Ubiquitin-like protein 51.5 17 0.00058 19.4 3.2 24 78-101 27-50 (79)
108 2daf_A FLJ35834 protein; hypot 51.3 19 0.00066 21.8 3.5 24 78-101 39-62 (118)
109 3hrd_B Nicotinate dehydrogenas 50.9 2.9 9.8E-05 29.8 -0.3 70 17-96 46-123 (330)
110 2kk8_A Uncharacterized protein 50.7 18 0.0006 20.1 3.2 24 78-101 33-56 (84)
111 2kj6_A Tubulin folding cofacto 50.7 25 0.00084 20.3 3.9 26 77-102 38-63 (97)
112 1yx5_B Ubiquitin; proteasome, 50.4 17 0.0006 20.5 3.2 24 78-101 23-46 (98)
113 2w3s_B Xanthine dehydrogenase; 49.5 11 0.00039 29.9 2.9 37 77-113 492-530 (777)
114 1wx7_A Ubiquilin 3; ubiquitin- 49.3 24 0.0008 20.3 3.7 24 78-101 39-62 (106)
115 3fiq_A OBP1, RCG36470, odorant 49.3 28 0.00095 21.5 4.3 29 69-98 120-148 (157)
116 2kvr_A Ubiquitin carboxyl-term 49.0 16 0.00053 22.4 2.9 78 18-102 8-92 (130)
117 1wju_A NEDD8 ultimate buster-1 48.6 22 0.00076 20.8 3.4 25 77-101 41-65 (100)
118 1v5t_A 8430435I17RIK protein; 48.4 23 0.00079 19.7 3.5 23 77-99 29-51 (90)
119 1t0y_A Tubulin folding cofacto 48.0 27 0.00092 20.8 3.9 26 77-102 29-54 (122)
120 1iv3_A 2-C-methyl-D-erythritol 47.8 18 0.00063 22.9 3.2 27 77-103 108-134 (152)
121 2l7r_A Ubiquitin-like protein 47.7 18 0.00061 20.4 2.9 24 78-101 40-63 (93)
122 2hj8_A Interferon-induced 17 k 47.6 18 0.00061 20.0 2.9 24 78-101 27-50 (88)
123 3ddv_A Transcriptional regulat 47.5 43 0.0015 20.0 7.3 74 27-104 21-95 (145)
124 4b6w_A Tubulin-specific chaper 47.5 22 0.00077 19.9 3.3 27 78-104 27-53 (86)
125 3td3_A Outer membrane protein 47.4 21 0.00073 21.1 3.4 29 71-99 60-92 (123)
126 2ebm_A RWD domain-containing p 47.3 30 0.001 20.5 4.1 35 1-35 71-105 (128)
127 4eew_A Large proline-rich prot 47.2 21 0.00072 19.5 3.2 24 78-101 40-63 (88)
128 1uh6_A Ubiquitin-like 5; beta- 47.1 19 0.00064 21.1 2.9 46 56-101 26-74 (100)
129 4fbj_B NEDD8; effector-HOST ta 46.9 19 0.00065 19.9 2.9 24 78-101 23-46 (88)
130 3v6c_B Ubiquitin; structural g 46.6 19 0.00066 20.0 2.9 25 77-101 39-63 (91)
131 2pa8_L DNA-directed RNA polyme 46.5 32 0.0011 19.6 3.9 26 2-29 53-78 (92)
132 1yqb_A Ubiquilin 3; structural 46.4 21 0.00074 20.4 3.2 24 78-101 44-67 (100)
133 3dbh_I NEDD8; cell cycle, acti 46.1 15 0.00051 20.1 2.4 24 78-101 35-58 (88)
134 2kxo_A Cell division topologic 46.0 42 0.0014 19.4 4.9 36 68-103 34-69 (95)
135 2klc_A Ubiquilin-1; ubiquitin- 45.8 22 0.00076 20.4 3.2 23 78-100 47-69 (101)
136 4hcn_B Polyubiquitin, ubiquiti 45.6 20 0.00068 20.3 2.9 25 77-101 44-68 (98)
137 1wm3_A Ubiquitin-like protein 45.6 26 0.0009 18.7 3.3 23 79-101 25-47 (72)
138 1rm6_A 4-hydroxybenzoyl-COA re 44.4 12 0.00041 29.8 2.3 80 17-98 482-561 (769)
139 2pmp_A 2-C-methyl-D-erythritol 44.4 52 0.0018 21.0 4.9 45 18-62 109-154 (160)
140 4dwf_A HLA-B-associated transc 44.2 25 0.00086 19.3 3.2 24 78-101 28-51 (90)
141 1t0a_A 2C-methyl-D-erythritol 44.1 52 0.0018 21.0 4.8 39 18-56 108-146 (159)
142 3nvz_C Xanthine dehydrogenase/ 44.1 12 0.00042 29.7 2.3 37 77-113 472-510 (755)
143 2uyz_B Small ubiquitin-related 43.8 24 0.00083 18.8 3.0 23 79-101 27-49 (79)
144 1t3q_B Quinoline 2-oxidoreduct 43.8 8.6 0.00029 30.7 1.4 79 17-98 507-585 (788)
145 1vku_A Acyl carrier protein; T 43.7 22 0.00077 20.4 3.0 26 71-96 12-37 (100)
146 1v6e_A Cytoskeleton-associated 43.7 18 0.00063 20.4 2.5 26 77-102 30-55 (95)
147 1dd4_C 50S ribosomal protein L 43.5 22 0.00075 17.2 2.4 16 79-94 19-34 (40)
148 3aq9_A Group 1 truncated hemog 43.2 11 0.00036 22.4 1.5 60 17-94 43-102 (121)
149 1x1m_A Ubiquitin-like protein 42.9 26 0.0009 20.2 3.2 26 76-101 45-73 (107)
150 3a4r_A Nfatc2-interacting prot 42.5 30 0.001 18.9 3.3 23 79-101 32-54 (79)
151 1ffv_B CUTL, molybdoprotein of 42.3 18 0.00061 28.9 3.0 36 77-112 526-563 (803)
152 2jrx_A UPF0352 protein YEJL; h 42.2 31 0.0011 19.5 3.2 27 69-95 49-75 (83)
153 1vra_A Arginine biosynthesis b 42.1 72 0.0025 21.3 5.5 32 69-100 103-134 (208)
154 1n62_B Carbon monoxide dehydro 41.8 19 0.00063 28.9 3.0 36 77-112 532-569 (809)
155 1gx1_A 2-C-methyl-D-erythritol 41.6 59 0.002 20.7 4.8 46 18-63 107-153 (160)
156 1wjn_A Tubulin-folding protein 41.4 30 0.001 19.5 3.3 26 77-102 34-59 (97)
157 3h0g_K DNA-directed RNA polyme 41.1 42 0.0014 20.4 4.0 26 2-29 70-95 (123)
158 3b08_A Polyubiquitin-C, ubiqui 40.8 57 0.002 19.5 8.1 81 21-101 23-122 (152)
159 1v5o_A 1700011N24RIK protein; 40.8 21 0.00071 20.5 2.5 24 78-101 34-57 (102)
160 2ook_A Hypothetical protein; s 40.8 44 0.0015 20.0 4.1 48 56-104 17-64 (127)
161 3b21_A ORF169B, OSPI; bacteria 40.7 64 0.0022 20.3 4.8 55 13-68 119-174 (220)
162 1wx8_A Riken cDNA 4931431F19; 40.4 20 0.0007 20.1 2.4 24 78-101 39-62 (96)
163 2v4i_A Glutamate N-acetyltrans 40.3 60 0.0021 21.0 4.8 32 69-100 72-103 (173)
164 3f0d_A 2-C-methyl-D-erythritol 40.0 65 0.0022 21.0 4.9 46 18-63 129-175 (183)
165 2yz0_A Serine/threonine-protei 39.9 38 0.0013 20.3 3.8 35 1-35 78-112 (138)
166 2io0_B Small ubiquitin-related 39.8 39 0.0013 19.1 3.5 23 79-101 29-51 (91)
167 2dnw_A Acyl carrier protein; A 39.7 24 0.00082 19.9 2.6 28 69-96 8-35 (99)
168 2kzr_A Ubiquitin thioesterase 39.6 21 0.00072 19.7 2.3 25 77-101 22-46 (86)
169 3re3_A 2-C-methyl-D-erythritol 39.5 70 0.0024 20.4 4.9 40 18-57 112-151 (162)
170 2ztg_A Alanyl-tRNA synthetase; 39.3 16 0.00055 29.1 2.3 32 74-112 163-195 (739)
171 2kdi_A Ubiquitin, vacuolar pro 39.2 32 0.0011 20.2 3.2 24 78-101 32-55 (114)
172 3vdz_A Ubiquitin-40S ribosomal 39.1 32 0.0011 20.0 3.2 25 77-101 57-81 (111)
173 2e01_A Cysteine proteinase 1; 39.0 1.2E+02 0.0041 22.7 7.4 67 17-108 213-283 (457)
174 1n62_B Carbon monoxide dehydro 38.6 14 0.00046 29.6 1.8 80 17-98 529-608 (809)
175 3m63_B Ubiquitin domain-contai 38.4 28 0.00096 19.9 2.8 25 77-101 49-73 (101)
176 3h90_A Ferrous-iron efflux pum 38.4 91 0.0031 21.1 6.4 44 59-104 236-281 (283)
177 1j8c_A Ubiquitin-like protein 38.2 40 0.0014 20.2 3.6 24 78-101 54-77 (125)
178 1ffv_B CUTL, molybdoprotein of 38.2 13 0.00045 29.7 1.6 80 17-98 523-602 (803)
179 1wgd_A Homocysteine-responsive 37.8 41 0.0014 18.7 3.4 25 77-101 31-57 (93)
180 4aty_A Terephthalate 1,2-CIS-d 37.7 96 0.0033 22.1 6.0 71 23-99 154-226 (349)
181 2io1_B Small ubiquitin-related 37.7 33 0.0011 19.5 3.0 23 79-101 31-53 (94)
182 3hma_A N-acetylmuramoyl-L-alan 37.3 50 0.0017 20.6 4.1 22 76-97 110-131 (157)
183 3b6n_A 2-C-methyl-D-erythritol 37.3 86 0.003 20.5 5.9 48 17-64 133-181 (187)
184 1wyw_B Ubiquitin-like protein 36.9 34 0.0012 19.3 3.0 23 79-101 45-67 (97)
185 2lol_A ACP, acyl carrier prote 36.9 36 0.0012 18.0 3.0 22 75-96 5-26 (81)
186 2jpq_A UPF0352 protein VP2129; 36.8 52 0.0018 18.5 3.5 27 68-94 48-74 (83)
187 2qnw_A Acyl carrier protein; m 36.7 24 0.00082 19.0 2.2 23 74-96 5-27 (82)
188 1wgg_A Ubiquitin carboxyl-term 36.7 24 0.00081 20.1 2.3 24 78-101 30-53 (96)
189 3rt3_B Ubiquitin-like protein 36.7 72 0.0025 19.4 7.6 83 19-101 23-127 (159)
190 2w3s_B Xanthine dehydrogenase; 36.7 10 0.00035 30.2 0.8 80 17-98 489-568 (777)
191 1twf_K B13.6, DNA-directed RNA 36.6 51 0.0018 19.9 3.8 25 2-28 71-95 (120)
192 2day_A Ring finger protein 25; 36.0 37 0.0013 20.1 3.2 34 2-35 76-109 (128)
193 1qlm_A Methenyltetrahydrometha 36.0 31 0.0011 24.5 3.1 24 80-103 148-171 (316)
194 1ttn_A DC-UBP, dendritic cell- 35.7 41 0.0014 19.3 3.2 25 77-101 45-69 (106)
195 1t6a_A Rbstp2229 gene product; 35.6 75 0.0026 19.3 4.8 37 53-90 74-110 (126)
196 2ibf_B Invasin IPAA, 70 kDa an 35.5 24 0.00081 14.9 1.5 14 21-34 8-21 (26)
197 2yci_X 5-methyltetrahydrofolat 35.5 56 0.0019 22.4 4.4 40 58-98 126-168 (271)
198 2z5b_A Protein YPL144W, DMP1; 35.5 83 0.0029 19.8 7.3 58 14-90 93-150 (151)
199 2i9n_A MHB4A peptide; beta-hai 34.8 16 0.00056 16.3 1.0 10 106-115 2-11 (33)
200 3m62_B UV excision repair prot 34.8 32 0.0011 19.9 2.7 24 78-101 24-47 (106)
201 2d07_B Ubiquitin-like protein 34.7 39 0.0013 19.1 3.0 23 79-101 41-63 (93)
202 2cnr_A FAS, ACP, acyl carrier 34.7 41 0.0014 17.8 3.0 22 75-96 6-27 (82)
203 2zze_A Alanyl-tRNA synthetase; 34.7 28 0.00095 27.8 3.0 34 74-112 163-196 (752)
204 1ywx_A 30S ribosomal protein S 34.5 55 0.0019 19.2 3.6 30 79-111 33-62 (102)
205 1xn9_A 30S ribosomal protein S 34.1 59 0.002 19.0 3.7 25 79-103 33-57 (101)
206 1qd1_A Formiminotransferase-cy 34.0 81 0.0028 22.5 5.0 27 66-92 95-121 (325)
207 1v86_A DNA segment, CHR 7, way 34.0 14 0.00048 21.0 0.9 25 77-101 38-62 (95)
208 1we7_A SF3A1 protein; structur 34.0 49 0.0017 19.3 3.4 23 79-101 59-81 (115)
209 1tke_A Threonyl-tRNA synthetas 34.0 80 0.0027 20.7 4.8 36 56-91 99-134 (224)
210 1dgj_A Aldehyde oxidoreductase 33.4 36 0.0012 27.7 3.5 35 79-113 661-700 (907)
211 3h90_A Ferrous-iron efflux pum 33.1 94 0.0032 21.0 5.2 29 16-46 252-280 (283)
212 1x3o_A Acyl carrier protein; s 33.1 35 0.0012 17.9 2.5 22 75-96 4-25 (80)
213 3v2l_A AGAP005208-PA; odorant 33.1 21 0.00073 20.6 1.7 28 69-96 1-28 (120)
214 3hrd_A Nicotinate dehydrogenas 33.1 30 0.001 25.3 2.8 37 71-113 206-242 (425)
215 2hqs_H Peptidoglycan-associate 33.0 75 0.0026 18.5 7.3 28 71-99 52-83 (118)
216 2dzm_A FAS-associated factor 1 32.8 31 0.001 20.0 2.3 24 77-100 30-53 (100)
217 1oi2_A Hypothetical protein YC 32.7 1.2E+02 0.0041 22.0 5.8 40 59-99 288-327 (366)
218 1t3q_B Quinoline 2-oxidoreduct 32.7 28 0.00095 27.8 2.7 28 77-104 510-537 (788)
219 2zws_A Neutral ceramidase; pri 32.7 1.1E+02 0.0036 23.9 5.9 42 55-101 53-96 (646)
220 1we6_A Splicing factor, putati 32.6 39 0.0013 19.5 2.8 24 78-101 54-77 (111)
221 4gvq_A Methenyltetrahydrometha 32.6 38 0.0013 24.1 3.1 24 80-103 148-171 (316)
222 1xov_A PLY protein, plypsa; al 32.5 1.3E+02 0.0045 21.2 7.2 74 17-94 111-191 (326)
223 2lxb_A Small glutamine-rich te 31.5 40 0.0014 18.7 2.5 20 70-89 3-22 (74)
224 3bx6_A Alpha-1-acid glycoprote 31.2 33 0.0011 22.2 2.5 30 69-99 129-158 (192)
225 1w55_A ISPD/ISPF bifunctional 31.1 32 0.0011 24.8 2.6 48 61-112 303-350 (371)
226 3gzm_A Acyl carrier protein; h 30.8 40 0.0014 18.0 2.5 22 75-96 4-25 (81)
227 1f80_D Acyl carrier protein; t 30.8 36 0.0012 18.0 2.3 22 75-96 6-27 (81)
228 2kwl_A ACP, acyl carrier prote 30.1 42 0.0014 18.0 2.5 23 74-96 7-29 (84)
229 1vq8_X 50S ribosomal protein L 30.1 60 0.002 18.7 3.2 24 75-98 28-51 (92)
230 1bkr_A Spectrin beta chain; fi 29.9 60 0.0021 18.9 3.3 25 69-93 54-78 (109)
231 4di1_A Enoyl-COA hydratase ECH 29.8 1.3E+02 0.0046 20.4 5.9 82 3-92 34-115 (277)
232 2nlv_A XISI protein-like; XISI 29.7 12 0.00043 22.5 0.2 21 82-103 81-101 (112)
233 1ooh_A Odorant binding protein 29.5 15 0.00051 21.5 0.5 28 68-95 2-29 (126)
234 2gpj_A Siderophore-interacting 29.0 67 0.0023 21.3 3.8 27 75-101 200-226 (252)
235 3ne8_A N-acetylmuramoyl-L-alan 28.8 1.3E+02 0.0045 20.0 5.8 40 51-90 179-225 (234)
236 1wh9_A 40S ribosomal protein S 28.7 85 0.0029 17.8 4.8 76 20-105 8-84 (92)
237 2yjk_A AFP, DPS; metal-binding 28.5 37 0.0013 21.2 2.3 33 1-33 1-34 (161)
238 2q3l_A Uncharacterized protein 28.4 52 0.0018 19.6 2.9 45 56-103 17-63 (126)
239 3cyp_B Chemotaxis protein MOTB 28.4 57 0.002 19.7 3.2 25 74-99 62-86 (138)
240 2nwv_A XISI protein-like; YP_3 28.3 14 0.00047 22.4 0.2 21 82-103 83-103 (114)
241 2aya_A DNA polymerase III subu 28.1 1E+02 0.0034 18.5 5.0 25 17-44 68-92 (128)
242 2p19_A Transcriptional regulat 28.0 96 0.0033 18.2 8.0 72 26-103 22-95 (149)
243 2v94_A RPS24, 30S ribosomal pr 28.0 70 0.0024 18.9 3.3 44 60-111 28-71 (107)
244 2ogg_A Trehalose operon transc 27.8 98 0.0034 18.3 7.5 74 26-103 23-97 (152)
245 3s26_A Neutrophil gelatinase-a 27.7 1.2E+02 0.004 19.1 5.3 42 68-110 141-185 (190)
246 3d7q_A XISI protein-like; stru 27.7 13 0.00044 22.4 0.0 21 82-103 81-101 (112)
247 4dbg_A Ranbp-type and C3HC4-ty 27.7 66 0.0023 18.9 3.2 23 78-100 49-71 (105)
248 2l3v_A ACP, acyl carrier prote 27.3 60 0.0021 16.9 2.8 21 76-96 4-24 (79)
249 2d88_A Protein mical-3; all al 27.2 67 0.0023 19.1 3.3 73 17-93 11-84 (121)
250 2jr2_A UPF0352 protein CPS_261 27.1 69 0.0023 17.7 2.9 22 68-89 47-68 (76)
251 2lxa_A Ubiquitin-like protein 27.0 71 0.0024 17.8 3.2 25 77-101 25-50 (87)
252 3b1l_X E3 ubiquitin-protein li 33.0 13 0.00045 19.7 0.0 24 78-101 23-46 (76)
253 1uel_A HHR23B, UV excision rep 26.6 88 0.003 17.3 3.7 24 78-101 23-49 (95)
254 2eke_C Ubiquitin-like protein 26.6 64 0.0022 18.9 3.0 23 79-101 54-76 (106)
255 2l9f_A CALE8, meacp; transfera 26.5 52 0.0018 19.3 2.5 21 76-96 14-34 (102)
256 3gku_A Probable RNA-binding pr 26.4 98 0.0033 20.8 4.2 33 80-113 17-50 (225)
257 1vlb_A Aldehyde oxidoreductase 26.3 37 0.0013 27.6 2.4 35 79-113 659-698 (907)
258 3sao_A Extracellular fatty aci 26.2 1.1E+02 0.0039 18.5 4.4 30 68-98 115-144 (160)
259 1xpp_A TA1416, DNA-directed RN 26.2 1.1E+02 0.0037 18.3 4.2 24 2-28 63-86 (115)
260 2l76_A Nfatc2-interacting prot 26.1 68 0.0023 18.6 2.9 24 79-102 44-67 (95)
261 1f6y_A 5-methyltetrahydrofolat 26.0 1E+02 0.0035 20.9 4.4 29 69-98 131-159 (262)
262 3oon_A Outer membrane protein 25.9 1E+02 0.0035 17.9 7.2 29 71-99 63-95 (123)
263 2wyq_A HHR23A, UV excision rep 25.6 79 0.0027 16.8 3.2 24 78-101 28-54 (85)
264 1ukx_A GCN2, GCN2 EIF2alpha ki 25.5 67 0.0023 19.1 3.1 34 2-35 80-113 (137)
265 2ikk_A Hypothetical transcript 25.5 1.2E+02 0.0041 18.5 7.6 74 26-103 44-119 (173)
266 1ugi_A UGI, uracil-DNA glycosy 25.5 52 0.0018 17.7 2.2 20 25-44 26-46 (84)
267 2kgw_A Outer membrane protein 25.2 98 0.0034 18.2 3.8 28 71-99 70-101 (129)
268 3zyv_A AOH1; oxidoreductase, m 25.1 47 0.0016 28.2 2.9 37 77-113 1047-1085(1335)
269 2eix_A NADH-cytochrome B5 redu 24.9 62 0.0021 21.0 3.0 23 75-98 220-242 (243)
270 3f8l_A HTH-type transcriptiona 24.9 1.4E+02 0.0047 19.0 7.8 75 26-105 67-143 (201)
271 4a20_A Ubiquitin-like protein 24.9 77 0.0026 18.1 3.1 26 76-101 42-68 (98)
272 1rxl_A AFAE-DSC, afimbrial adh 24.9 54 0.0019 20.6 2.5 23 93-115 75-97 (156)
273 3l0w_B Monoubiquitinated proli 24.9 92 0.0031 19.6 3.7 24 78-101 23-46 (169)
274 2juw_A UPF0352 protein SO_2176 24.9 78 0.0027 17.7 2.9 22 68-89 48-69 (80)
275 4fyj_A PTH, peptidyl-tRNA hydr 24.7 84 0.0029 20.7 3.6 20 85-104 85-104 (199)
276 2ava_A ACP I, acyl carrier pro 24.6 69 0.0023 16.9 2.8 20 75-94 3-22 (82)
277 1yqe_A Hypothetical UPF0204 pr 24.5 1.8E+02 0.0062 20.2 9.6 64 19-86 115-182 (282)
278 4gof_A Small glutamine-rich te 24.5 59 0.002 16.6 2.2 16 74-89 2-17 (52)
279 4efo_A Serine/threonine-protei 24.5 86 0.0029 18.0 3.2 24 78-101 36-59 (94)
280 2juz_A UPF0352 protein HI0840; 24.2 79 0.0027 17.7 2.8 22 69-90 49-70 (80)
281 1yb0_A Prophage lambdaba02, N- 24.2 72 0.0025 19.8 3.1 23 75-97 105-127 (159)
282 2ooi_A SA0254 protein; staphyl 24.0 1.2E+02 0.0042 18.1 5.2 71 26-103 35-109 (162)
283 4g1k_A Triosephosphate isomera 23.8 1.1E+02 0.0039 21.1 4.2 41 7-58 198-238 (272)
284 4fhz_A Phospholipase/carboxyle 23.7 83 0.0029 21.3 3.6 22 78-99 141-162 (285)
285 2aiz_P Outer membrane protein 23.7 1.3E+02 0.0043 18.1 7.0 28 71-99 76-107 (134)
286 1wz0_A Ubiquitin-like protein 23.6 43 0.0015 19.5 1.8 23 79-101 48-70 (104)
287 3nea_A PTH, peptidyl-tRNA hydr 23.6 90 0.0031 20.7 3.6 21 84-104 97-117 (207)
288 3d2y_A N-acetylmuramoyl-L-alan 23.5 90 0.0031 21.2 3.7 29 69-98 122-150 (261)
289 2k8h_A Small ubiquitin protein 23.4 58 0.002 19.2 2.4 23 79-101 50-72 (110)
290 1klp_A ACP, ACPM, meromycolate 23.3 81 0.0028 18.2 3.1 23 74-96 5-27 (115)
291 1wyl_A NEDD9 interacting prote 23.3 62 0.0021 19.1 2.5 73 17-93 9-82 (116)
292 2okg_A Central glycolytic gene 23.1 82 0.0028 21.1 3.4 76 17-98 39-121 (255)
293 2k1s_A Inner membrane lipoprot 23.0 1.1E+02 0.0038 18.6 3.8 28 71-99 80-111 (149)
294 2xse_A Thymine dioxygenase JBP 22.7 2.2 7.5E-05 26.9 -4.1 39 76-114 103-141 (170)
295 3kyd_D Small ubiquitin-related 22.5 1.1E+02 0.0037 18.2 3.5 22 80-101 65-86 (115)
296 1ryb_A CRS2; alpha-beta, hydro 22.2 1E+02 0.0034 20.4 3.6 22 83-104 89-110 (205)
297 1qfj_A Protein (flavin reducta 22.2 71 0.0024 20.5 2.9 24 75-98 203-226 (232)
298 1vz6_A Ornithine acetyl-transf 21.9 2.2E+02 0.0074 20.9 5.5 34 67-100 77-110 (393)
299 3m9y_A Triosephosphate isomera 21.8 53 0.0018 22.5 2.2 45 6-57 175-219 (254)
300 3unc_A Xanthine dehydrogenase/ 21.7 48 0.0016 28.2 2.3 36 78-113 1043-1080(1332)
301 2d87_A Smoothelin splice isofo 21.6 90 0.0031 18.8 3.1 25 69-93 58-82 (128)
302 2jxx_A Nfatc2-interacting prot 21.5 1E+02 0.0035 17.7 3.2 23 79-101 50-72 (97)
303 3tuf_A Stage III sporulation p 21.5 29 0.001 23.0 0.8 27 75-102 169-195 (197)
304 3v2i_A PTH, peptidyl-tRNA hydr 21.4 1E+02 0.0036 20.6 3.6 20 85-104 98-117 (222)
305 3ta6_A Triosephosphate isomera 21.1 57 0.0019 22.6 2.3 43 8-57 179-221 (267)
306 3lx4_A Fe-hydrogenase; HYDA, H 21.0 1.1E+02 0.0037 22.9 3.9 26 76-101 157-182 (457)
307 3u5c_Y RP50, 40S ribosomal pro 21.0 77 0.0026 19.6 2.6 39 60-103 24-62 (135)
308 3p7i_A PHND, subunit of alkylp 20.9 1.2E+02 0.0043 20.8 4.1 40 53-92 8-47 (321)
309 4hoy_A PTH, peptidyl-tRNA hydr 20.9 88 0.003 20.5 3.1 23 82-104 76-98 (193)
310 2fnj_B Transcription elongatio 20.8 1E+02 0.0036 18.4 3.2 24 78-101 24-47 (118)
311 3cnv_A Putative GNTR-family tr 20.7 1.4E+02 0.0049 17.7 9.4 74 26-103 33-110 (162)
312 2bcm_B F1845 fimbrial protein; 20.7 73 0.0025 20.2 2.5 23 93-115 78-100 (165)
313 1k8b_A EIF-2-beta, probable tr 20.6 47 0.0016 16.9 1.4 12 28-39 17-28 (52)
314 4ajy_B Transcription elongatio 20.5 1.1E+02 0.0037 18.4 3.2 24 78-101 24-47 (118)
315 2z2i_A PTH, peptidyl-tRNA hydr 20.5 91 0.0031 20.4 3.1 20 85-104 79-98 (191)
316 2pth_A Peptidyl-tRNA hydrolase 20.5 90 0.0031 20.4 3.0 20 85-104 77-96 (193)
317 1ut1_A DRAA, DR hemagglutinin 20.3 74 0.0025 19.8 2.4 23 93-115 87-109 (148)
318 3goe_A DNA repair protein RAD6 20.2 1.3E+02 0.0044 16.9 3.3 20 82-101 36-56 (82)
319 3qwm_A Iqsec1, IQ motif and SE 20.1 1E+02 0.0035 19.1 3.1 18 15-32 108-125 (140)
320 1l0i_A Acyl carrier protein; a 20.0 69 0.0024 16.7 2.1 20 77-96 4-23 (78)
321 3ejb_A Acyl carrier protein; p 20.0 51 0.0017 18.6 1.6 23 74-96 20-42 (97)
No 1
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=100.00 E-value=1.3e-44 Score=226.76 Aligned_cols=113 Identities=33% Similarity=0.555 Sum_probs=110.9
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTI 81 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i 81 (115)
|+++|+||++.+++ +++|++++++++|+++|||++++||++++++.|+|||+++||+|++|+++|++++++|++++++|
T Consensus 1 P~i~~~TNv~~~~~-~~~~~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i 79 (114)
T 3djh_A 1 PMFIVNTNVPRASV-PDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLL 79 (114)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHH
T ss_pred CEEEEEecCCcccc-cHHHHHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCCEEEEEEEEccCCCHHHHHHHHHHH
Confidence 99999999998886 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 82 AEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
+++++++||||++|+||.|+|++++||||||+||
T Consensus 80 ~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~tf 113 (114)
T 3djh_A 80 CGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 113 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHhCcCcceEEEEEEECCHHHeeECCEEC
Confidence 9999999999999999999999999999999998
No 2
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=100.00 E-value=1.7e-44 Score=226.14 Aligned_cols=114 Identities=28% Similarity=0.452 Sum_probs=112.1
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTI 81 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i 81 (115)
|+++|+||++.+++++++|++++++++|+++|||++++||++++++.|+|||+++||+|++|+++|++++++|++++++|
T Consensus 1 P~i~~~TNv~~~~~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i 80 (114)
T 4dh4_A 1 PKCMIFCPVAATPAQQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPCAFIRVASIGGITSSTNCKIAAAL 80 (114)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCCEEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCeEEEEEEEEcCCCHHHHHHHHHHH
Confidence 99999999999777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 82 AEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
+++|+++||++++|+||.|.|++++||||||+||
T Consensus 81 ~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~tf 114 (114)
T 4dh4_A 81 SAACERHLGVPKNRIYTTFTNKSPSEWAMGDRTF 114 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEEECGGGCEETTEEC
T ss_pred HHHHHHHhCcCcccEEEEEEeCCHHHeEECCEeC
Confidence 9999999999999999999999999999999998
No 3
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=100.00 E-value=2.9e-44 Score=231.00 Aligned_cols=114 Identities=26% Similarity=0.408 Sum_probs=94.5
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+++|+||++.+++++++|++++++++++++|||++++||+++ ++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 22 MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~~~s~~ 100 (135)
T 3t5s_A 22 MPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNPSISAA 100 (135)
T ss_dssp CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCHHHHHH
T ss_pred cceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCchHHHH
Confidence 99999999999988778999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|+++|+++||||++|+||.|.|++++||||||+||
T Consensus 101 i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~Tf 135 (135)
T 3t5s_A 101 ITGCLTQHFKVKPERVYISFNEAKGHNWGFNGSTF 135 (135)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEC-------------
T ss_pred HHHHHHHhcccCccEEEEEeccccCcccccCCCcC
Confidence 99999999999999999999999999999999998
No 4
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=100.00 E-value=5e-44 Score=225.02 Aligned_cols=113 Identities=29% Similarity=0.464 Sum_probs=109.4
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCCh-hhhHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGP-SVNGKLSST 80 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~-~~~~~~~~~ 80 (115)
|+++|+||++.+++ +++|++++++++|+++|||++++||+++++++|+|||+++||+|++|+++|++++ ++|++++++
T Consensus 1 P~i~l~TNv~~~~~-~~~l~~~ls~~~a~~lgKpe~~vmV~v~~~~~m~fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~ 79 (117)
T 3kan_A 1 PFLELDTNLPANRV-PAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAH 79 (117)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEecCccccc-hHHHHHHHHHHHHHHHCCChHHEEEEEeCCCeEEECCCCCceEEEEEEEecCCCcHHHHHHHHHH
Confidence 99999999999887 4789999999999999999999999999999999999999999999999999876 789999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|+++++++||||++|+||.|.|+++++|||||+||
T Consensus 80 i~~~l~~~Lgi~~~RiyI~f~d~~~~~~G~nG~tf 114 (117)
T 3kan_A 80 FFEFLTKELALGQDRILIRFFPLESWQIGKIGTVM 114 (117)
T ss_dssp HHHHHHHHHTCCGGGEEEEEEEECGGGCEETTEEG
T ss_pred HHHHHHHHhCcCcCeEEEEEEEcCHHHeeeCCEEe
Confidence 99999999999999999999999999999999997
No 5
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=100.00 E-value=1e-43 Score=227.91 Aligned_cols=113 Identities=24% Similarity=0.493 Sum_probs=110.9
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+++|+||+..+++++++|++++++++++++|||++++||++++++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 21 MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~ 100 (133)
T 3fwu_A 21 MPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSI 100 (133)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCEEEEEEEEcCCCCHHHHHHHHHH
Confidence 99999999999999877789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|+++|+++|||+++|+||.|.|+ +||||||+||
T Consensus 101 i~~~l~~~LgI~~~riyI~f~d~--~~wG~nG~tf 133 (133)
T 3fwu_A 101 VTAAITKECGIVADRIFVLYFSP--LHCGWNGTNF 133 (133)
T ss_dssp HHHHHHHHHCCCGGGEEEEEECC--SCCEETTEEC
T ss_pred HHHHHHHHhCcChhhEEEEEEEH--HHEeeCcEEC
Confidence 99999999999999999999999 9999999998
No 6
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=100.00 E-value=2.2e-43 Score=226.41 Aligned_cols=113 Identities=30% Similarity=0.496 Sum_probs=111.0
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+++|+||+..+++++++|++++++++++++|||++++||++++++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 21 MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~ 100 (133)
T 3fwt_A 21 MPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKPKMMTPR 100 (133)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCeEEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999988778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|+++|+++||||++|+||.|.|++ ||||||+||
T Consensus 101 i~~~l~~~LgI~~~rvyI~f~d~~--~wg~nG~Tf 133 (133)
T 3fwt_A 101 IAAAITKECGIPAERIYVFYYSTK--HCGWNGTNF 133 (133)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEES--CCEETTEEC
T ss_pred HHHHHHHHhCcChhhEEEEEEEhh--hEeECCEeC
Confidence 999999999999999999999998 999999998
No 7
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=100.00 E-value=3.3e-40 Score=206.76 Aligned_cols=114 Identities=37% Similarity=0.584 Sum_probs=112.4
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+++|+||+..+++ +++|++++++++++++|||+++++|.++++..|++||+++|++|++|++++++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~~~eqk~~l~~~ 79 (115)
T 1uiz_A 1 MPVFTIRTNVCRDSV-PDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKL 79 (115)
T ss_dssp CCEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHH
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCcChhHEEEEEECCcceEECCCCCCeEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999988 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++.++++||++++|+||.|+|++++||||||+||
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t~ 114 (115)
T 1uiz_A 80 LCDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHHhCcCcceEEEEEEECCHHHeeeCCEEC
Confidence 99999999999999999999999999999999997
No 8
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=100.00 E-value=7.2e-40 Score=205.25 Aligned_cols=114 Identities=38% Similarity=0.661 Sum_probs=111.3
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+++|+||+..+++ +++|++++++++++++|||+++++|+++++..|++||+++|++|++|++++++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~ 79 (115)
T 2xcz_A 1 MPLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSEL 79 (115)
T ss_dssp -CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHH
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCCCCcEEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++.+++.||++++|+||.|++++++||||||+||
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t~ 114 (115)
T 2xcz_A 80 VCGHIEQNLGIPADRIYIGFEDVPARLWGWNGSTF 114 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEEC
T ss_pred HHHHHHHHhCcCcccEEEEEEECCHHHeeeCCEEC
Confidence 99999999999999999999999999999999997
No 9
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=100.00 E-value=2.1e-39 Score=202.55 Aligned_cols=113 Identities=39% Similarity=0.637 Sum_probs=111.2
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTI 81 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i 81 (115)
|+++|+||+..+++ +++|++++++++++++|||++++||+++++..|++||+++|++|++|++++++++++|++++++|
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~~~~~~~i~i~~~~g~~~eqk~~l~~~i 79 (113)
T 1hfo_A 1 PIFTLNTNIKATDV-PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKL 79 (113)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSSCSHHHHHHHHHHH
T ss_pred CEEEEEecCCCccc-HHHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCCCCCeEEEEEEEecCCCHHHHHHHHHHH
Confidence 99999999999888 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 82 AEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
++.++++||++++|+||.|++++++||||||+||
T Consensus 80 ~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~tf 113 (113)
T 1hfo_A 80 FDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113 (113)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHhCcCcCeEEEEEEECCHHHeeeCCEeC
Confidence 9999999999999999999999999999999998
No 10
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=100.00 E-value=2e-39 Score=204.39 Aligned_cols=114 Identities=25% Similarity=0.406 Sum_probs=110.8
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+++|+||+..+++ +++|++++++++++++|||+++++|.++++..|+|||+.+|++|++|++++++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~ 79 (119)
T 2os5_A 1 MPMVRVATNLPDKDV-PANFEERLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPVAVIKVESIGALSADDNIRHTQK 79 (119)
T ss_dssp -CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCchh-HHHHHHHHHHHHHHHHCcChHHEEEEEECCccEEEcCCCCCeEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++.++++||++++|+||.|+|++++||||||.||
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~~ 114 (119)
T 2os5_A 80 ITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTTV 114 (119)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEEH
T ss_pred HHHHHHHHhCcCcccEEEEEEECCHHHeeECCEEh
Confidence 99999999999999999999999999999999985
No 11
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=100.00 E-value=1.2e-38 Score=202.44 Aligned_cols=114 Identities=31% Similarity=0.501 Sum_probs=103.1
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTI 81 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i 81 (115)
|+++|+||+..+++++++|++++++++++++|||+++++|+++++..|+|||+++||+|++|++++++++++|++++++|
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i 80 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSLLADKI 80 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCEEEEEECC-----CTHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCCCCCcEEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 82 AEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
++.+++.||++++|+||.|.|++++||||||.||
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~~ 114 (125)
T 2wkb_A 81 TKILSNHLSVKPRRVYIEFRDCSAQNFAFSGSLF 114 (125)
T ss_dssp HHHHHHHHCCCGGGEEEEEEC----CEEEEGGGT
T ss_pred HHHHHHHhCcCcceEEEEEEECCHHHeEECCEEh
Confidence 9999999999999999999999999999999986
No 12
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=100.00 E-value=1.8e-38 Score=198.07 Aligned_cols=111 Identities=26% Similarity=0.530 Sum_probs=109.3
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHH-HHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVA-KILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a-~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
|+++|+||+..+++ +++|+++++++++ +++|||++++||+++++..|++||+++||+|++|++++++++++|++++++
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~~~~v~~~~~~~~~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~ 79 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSI 79 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHH
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHHHEEEEEeCCceEEECCCCCCEEEEEEEEcCCCCHHHHHHHHHH
Confidence 99999999999998 9999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++.++++||++++|+||.|+|++ ||||||+||
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~--~wg~~G~tf 112 (112)
T 3b64_A 80 VTAAITKECGIVADRIFVLYFSPL--HCGWNGTNF 112 (112)
T ss_dssp HHHHHHHHHCCCGGGEEEEEECCS--CCEETTEEC
T ss_pred HHHHHHHHhCcCcceEEEEEEEhh--HeeECCEEC
Confidence 999999999999999999999998 999999998
No 13
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=100.00 E-value=9.3e-33 Score=176.43 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=108.0
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcc--eeEEEEeCCceEEecc------CCCceeEEEEEeecCCChh
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSES--YVMILINGGVPIAFAG------TEAPAAYGELISIGSLGPS 72 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~--~i~v~~~~~~~~~~gg------~~~p~~~v~i~~~~~~~~~ 72 (115)
||+++|++|...+++++++|++++++++++.+|||++ +++++..+...|.+|| +++|+++++|. ..+++++
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~~~~~I~i~-~~grt~e 79 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVI-SRPRSEE 79 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEE-ESCCCHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCCccCCcCCCCCeEEEEEE-eCCCCHH
Confidence 9999999999999988999999999999999999999 7788888889999998 77999999999 6679999
Q ss_pred hhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 73 VNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 73 ~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
+|+++++++++.|++.||++++++||.|.|++++||||||.||
T Consensus 80 qK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~~~wg~gG~~~ 122 (131)
T 2aal_A 80 QKVCFYKLLTGALERDCGISPDDVIVALVENSDADWSFGRGRA 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEECBTTBC
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEh
Confidence 9999999999999999999999999999999999999999987
No 14
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=99.97 E-value=5.4e-30 Score=162.95 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=105.9
Q ss_pred EEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcc--eeEEEEeCCceEEecc-CCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 4 LNLYTNVPVDAVIASDILRDATKAVAKILGKSES--YVMILINGGVPIAFAG-TEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~--~i~v~~~~~~~~~~gg-~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
++|+.....+++++++|++.+++++++.+|+|++ +++++..+...|.+|| +++|+++++|++.+++++++|++++++
T Consensus 2 v~I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~grt~eqK~~l~~~ 81 (128)
T 1mww_A 2 ITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKM 81 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETTCCHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEECCCCCHHHHHHHHHH
Confidence 5677777778888999999999999999999999 8999999999999997 889999999999999999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++.+++.||+|++++||.|.+++++||||||.||
T Consensus 82 l~~~l~~~lg~~~~~v~V~i~e~~~~~wg~gG~~~ 116 (128)
T 1mww_A 82 LFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTG 116 (128)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEECGGGEEETTEET
T ss_pred HHHHHHHHhCcChhhEEEEEEECCHHHeeECCEEH
Confidence 99999999999999999999999999999999986
No 15
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=99.93 E-value=2.6e-25 Score=144.46 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=102.9
Q ss_pred eEEEEeCCCC-CccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCCCce--eEEEEEeecCCChhhhHHH
Q 033597 3 TLNLYTNVPV-DAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTEAPA--AYGELISIGSLGPSVNGKL 77 (115)
Q Consensus 3 ~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~~p~--~~v~i~~~~~~~~~~~~~~ 77 (115)
+++|+..... +++++++|.+.+++++++++|+|+.+++|.+.+ ...|.+||...++ +++++.+++++++++|+++
T Consensus 2 ~~~I~~~~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~~s~~~~~I~i~~~~Grt~eqk~~l 81 (148)
T 3n4h_A 2 TYTCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQSASENHIWVQATIRSGRTEKQKEEL 81 (148)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEECCTTCEEEEEEEESCCCHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEEccCcEEEEEEEEECCCCHHHHHHH
Confidence 5678877665 888899999999999999999999999988874 7789999977554 9999999999999999999
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
+++|++.+.+.||+|++++||.|+++++++||+||.++
T Consensus 82 ~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~ 119 (148)
T 3n4h_A 82 LLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLL 119 (148)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC-
T ss_pred HHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEEC
Confidence 99999999999999999999999999999999999874
No 16
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=99.90 E-value=1.2e-22 Score=130.33 Aligned_cols=112 Identities=10% Similarity=0.106 Sum_probs=101.1
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEe--CCceEEec------cCCCceeEEEEEeecCCChhh
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILIN--GGVPIAFA------GTEAPAAYGELISIGSLGPSV 73 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~~~~g------g~~~p~~~v~i~~~~~~~~~~ 73 (115)
|+++|+.....++++++++.+.+++++.+.+|.|++.+.+.+. +...+.++ +++++.++++|....+++.|+
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gRt~Eq 80 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGRTIET 80 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTCCHHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCCCHHH
Confidence 8999999999999999999999999999999999997666554 45567554 355899999999998899999
Q ss_pred hHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
|+++++++++.+ +.||+++++++|.+.+++.+||||||..
T Consensus 81 K~~L~~~it~~l-~~lg~~~~~v~V~i~E~~~~~W~~ggG~ 120 (136)
T 3mlc_A 81 KQRVFAAITESL-APIGVAGSDVFIAITENAPHDWSFGFGS 120 (136)
T ss_dssp HHHHHHHHHHHH-TTTTCCGGGEEEEEEEECGGGEECBTTB
T ss_pred HHHHHHHHHHHH-HHcCCCcccEEEEEEEcCHHHeeecCcE
Confidence 999999999999 9999999999999999999999999863
No 17
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=99.87 E-value=1.6e-21 Score=128.22 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=98.8
Q ss_pred CCeEEEEeCCCC-CccCHHHHHHHHHHHHHHHhCCCcceeEEEEe--CCceEEeccCC-CceeEEEEEe--ecCCChhhh
Q 033597 1 MPTLNLYTNVPV-DAVIASDILRDATKAVAKILGKSESYVMILIN--GGVPIAFAGTE-APAAYGELIS--IGSLGPSVN 74 (115)
Q Consensus 1 MP~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~~~~gg~~-~p~~~v~i~~--~~~~~~~~~ 74 (115)
||+++|+.-... +++++++|.+.+++++.++ |+|..++.|.+. +...+..||.. +...+++|.. ..+++.++|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~~~~~v~I~I~~~a~~gRt~eqK 100 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQHPNFVALTIYHLARTMTSDEQR 100 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEECSSEEEEEEEEETTSCCSHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcccCCEEEEEEEeccCCCCCHHHH
Confidence 999999987764 8888999999999999999 999998777664 46678888754 6667777733 466999999
Q ss_pred HHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
++|+++|++.|++.+|+++++++|.+.+.+.+|||++|.+
T Consensus 101 ~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~e~Wsf~G~~ 140 (161)
T 3c6v_A 101 QGFLKRIDAFLTPMFEPKGIDWEYFVTEAPRDLWKINGLA 140 (161)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEEEECGGGCEETTBC
T ss_pred HHHHHHHHHHHHHHcCCChhhEEEEEEEcCccceEECCCc
Confidence 9999999999999999999999999999999999999975
No 18
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=99.78 E-value=2.7e-18 Score=107.53 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=95.3
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHH
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSST 80 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~ 80 (115)
||+|++ ...+.+..+.+.+.|.+-++++++-|.+++.+.+.+... ++.| +.+.+|+|..+ ++++|++++++++
T Consensus 16 MPhlr~---rgi~~e~v~~lS~~Lid~La~i~~~~~e~fTle~i~s~~-i~~G--~~MP~VeV~~f-gRt~EqK~~la~~ 88 (122)
T 1u9d_A 16 MPHLRF---RAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINTQY-FAEG--GVYPMVEVLWF-GREQQTQDQIAQV 88 (122)
T ss_dssp CCEEEE---ESSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCCCC-CCTT--CCCCEEEEEES-CCCHHHHHHHHHH
T ss_pred CceEEE---CCCCHHHHHHHhHHHHHHHHHHHCCCcccEEEEEeeeEE-EecC--CCCCEEEEEEc-CCCHHHHHHHHHH
Confidence 999999 344555578999999999999999999999999998654 4666 66779999999 5999999999999
Q ss_pred HHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 81 IAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 81 i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++.+.+. |.+++++.|.|.++++++|+.||.-|
T Consensus 89 IT~av~~~-~~~~e~V~Vif~el~~~~y~~gG~~~ 122 (122)
T 1u9d_A 89 ITDQIRQL-LGADSHLAVVFIPLQRTAYYLDGQHF 122 (122)
T ss_dssp HHHHHHHH-HCTTCCCEEEEEECCGGGCEETTEEC
T ss_pred HHHHHHHh-CCCCceEEEEEEecCHHHeeeCCEEC
Confidence 99999999 89999999999999999999999865
No 19
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=99.75 E-value=9.4e-18 Score=108.93 Aligned_cols=110 Identities=10% Similarity=0.144 Sum_probs=97.5
Q ss_pred EEEeC-CCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC--CceeEEEEEeecCCChhhhHHHHH
Q 033597 5 NLYTN-VPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE--APAAYGELISIGSLGPSVNGKLSS 79 (115)
Q Consensus 5 ~i~tn-~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~--~p~~~v~i~~~~~~~~~~~~~~~~ 79 (115)
+|+.. ...+++++++|.+.+++++++.+|.|++++.|.+.+ ...++.||.. +...|+++....+++.++++++++
T Consensus 4 ~i~~~~~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L~~ 83 (149)
T 3mf7_A 4 MVYVSQDRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQLAQ 83 (149)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHHHH
Confidence 45443 457788899999999999999999999998887754 5667887643 778999999988999999999999
Q ss_pred HHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 80 TIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 80 ~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
+|++.+.+.+|+++++++|.+.++++.+|+.+|..
T Consensus 84 ~I~~~l~~~~g~~~edV~V~i~e~~~~~~~~~G~~ 118 (149)
T 3mf7_A 84 RIVDDVSVAAEIDRKHIWVYFGEMPAQQMVEYGRF 118 (149)
T ss_dssp HHHHHHHHHTTCCGGGEEEEEEEECGGGCCCSSCC
T ss_pred HHHHHHHHHcCCChhhEEEEEEEcCHHHHHhcCee
Confidence 99999999999999999999999999999999975
No 20
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=99.70 E-value=2.3e-17 Score=91.68 Aligned_cols=56 Identities=7% Similarity=0.193 Sum_probs=53.8
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++|...+++++++|++++++|++.+.+.||+|++++||.|.++++++||+||.++
T Consensus 2 ~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~ 57 (61)
T 2opa_A 2 YVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGKRL 57 (61)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEEh
Confidence 68889888999999999999999999999999999999999999999999999885
No 21
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=99.69 E-value=4e-17 Score=90.92 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=53.9
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
|++|...+++++++|++++++|++.+.+.||+|++++||.|+++++++||++|.||
T Consensus 2 ~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~~ 57 (62)
T 1otf_A 2 IAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEPA 57 (62)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEET
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEEH
Confidence 68888888999999999999999999999999999999999999999999999986
No 22
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=99.67 E-value=8.7e-17 Score=90.11 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=54.5
Q ss_pred eEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 59 AYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 59 ~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
.|++|++.++++++++++++++|++.+++.||+|++++||.|.++++++||++|.++
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~ 58 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVLF 58 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEEH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEh
Confidence 588999888899999999999999999999999999999999999999999999874
No 23
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=99.62 E-value=8.6e-16 Score=85.44 Aligned_cols=58 Identities=7% Similarity=0.107 Sum_probs=55.5
Q ss_pred eeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 58 AAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 58 ~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
+.+++|...+++++++++++++++++.+.+.||+|++++||.|.++++++||++|.+|
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~~ 60 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVRK 60 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEET
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEc
Confidence 5688999999999999999999999999999999999999999999999999999986
No 24
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=99.62 E-value=1.5e-15 Score=86.01 Aligned_cols=55 Identities=9% Similarity=0.245 Sum_probs=52.8
Q ss_pred EEEEEeec---CCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 60 YGELISIG---SLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 60 ~v~i~~~~---~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
|++|+..+ ++++++++++++++++.+.+.||+|++++||.|+++++++||++|.+
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 59 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES 59 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEE
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 78888887 89999999999999999999999999999999999999999999986
No 25
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=99.61 E-value=1.2e-15 Score=85.24 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=52.0
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
+++|+. +++++++++++++++++.+.+.||+|+++++|.+++++++|||++|.++
T Consensus 2 ~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~~ 56 (62)
T 3m20_A 2 VLIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKLI 56 (62)
T ss_dssp EEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEET
T ss_pred EEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEEh
Confidence 677887 8899999999999999999999999999999999999999999999864
No 26
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=99.58 E-value=3.6e-15 Score=83.95 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=52.6
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
+++|....++++++++++++++++.+.+.||+|+++++|.|.++++++||+||.+
T Consensus 2 ~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 56 (65)
T 3ry0_A 2 LIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRS 56 (65)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 6788888889999999999999999999999999999999999999999999986
No 27
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=99.58 E-value=5e-15 Score=85.00 Aligned_cols=57 Identities=5% Similarity=0.130 Sum_probs=53.8
Q ss_pred eEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 59 AYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 59 ~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
-+++|+...+++.+++++++++|++.+.+.||+|++++||.|+++++++||++|.+.
T Consensus 2 P~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~ 58 (72)
T 3mb2_A 2 LLLRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGISM 58 (72)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEET
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEH
Confidence 478888888899999999999999999999999999999999999999999999863
No 28
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=99.57 E-value=5.7e-15 Score=85.69 Aligned_cols=57 Identities=7% Similarity=-0.038 Sum_probs=53.9
Q ss_pred eEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCccC
Q 033597 59 AYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 59 ~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
-+++|....++++++++++++++++.+.+.||+|+++++|.|+++++++||+||.++
T Consensus 2 P~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~~~ 58 (76)
T 3ej9_A 2 PMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGEHL 58 (76)
T ss_dssp CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTEEC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEc
Confidence 478888888899999999999999999999999999999999999999999999874
No 29
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=99.45 E-value=2e-12 Score=83.40 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=94.1
Q ss_pred CCeEEEEeCCCCC-ccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCC--CceeEEEEEeecCCChhhhHHH
Q 033597 1 MPTLNLYTNVPVD-AVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTE--APAAYGELISIGSLGPSVNGKL 77 (115)
Q Consensus 1 MP~i~i~tn~~~~-~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~--~p~~~v~i~~~~~~~~~~~~~~ 77 (115)
||++.|+=+.... ..+..+|++.|.+++.+...-|+.-|-+...+......|+.. +...+|+|+...|++.|+|+++
T Consensus 22 MPHi~IEYS~nl~~~~d~~~l~~~vh~al~~~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L 101 (146)
T 3e6q_A 22 MPHLVIEATANLRLETSPGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQAL 101 (146)
T ss_dssp CCEEEEEEETTCEESSCHHHHHHHHHHHHHHTTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHH
T ss_pred CCeEEEEECCCcccccCHHHHHHHHHHHHHhcCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHH
Confidence 9999996655543 455789999999999997777888888888777777777543 5677788888889999999999
Q ss_pred HHHHHHHHHhHhCCCC---CceEEEEEecCCCCceec
Q 033597 78 SSTIAEILQTKLLIDS---SRFYIKLYDVERSFFGFN 111 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~---~ri~i~f~~~~~~~~g~~ 111 (115)
+++|++.+.+.|+-++ ..+.|.+.|+++++|..+
T Consensus 102 ~e~v~~al~~~l~~~~~~~~~lsVeI~E~~~~~y~k~ 138 (146)
T 3e6q_A 102 GESLCEVLAGAVAGGGEEGVQVSVEVREMERASYAKR 138 (146)
T ss_dssp HHHHHHHHHHHEEECSSSCEEEEEEEEEECGGGCEEE
T ss_pred HHHHHHHHHHHhCCccCCceEEEEEEEECCcccccee
Confidence 9999999999999875 599999999999999865
No 30
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=99.37 E-value=9e-12 Score=78.49 Aligned_cols=110 Identities=7% Similarity=-0.035 Sum_probs=92.3
Q ss_pred CeEEEEeCCCCCc-cCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCC-C-ceeEEEEEeecCCChhhhHHHH
Q 033597 2 PTLNLYTNVPVDA-VIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTE-A-PAAYGELISIGSLGPSVNGKLS 78 (115)
Q Consensus 2 P~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~-~-p~~~v~i~~~~~~~~~~~~~~~ 78 (115)
|++.|.-.....+ .+..+|++.+.+++.+...-|+..+-+...+-..+..|+.. + ...+++++...|++.|+|++++
T Consensus 1 PH~~ieyS~nl~~~~~~~~L~~~lh~~l~~~~~fp~~~ik~Ra~~~~~~~vg~~~~~~~fvhi~i~i~~GRs~eqK~~L~ 80 (125)
T 1otg_A 1 PHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAG 80 (125)
T ss_dssp CEEEEEEEGGGHHHHTHHHHHHHHHHHHHTTSSSCGGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHH
T ss_pred CeEEEEeCCCcccccCHHHHHHHHHHHHHHcCCCCCcCceEeeEEcccEEEcCCCCCcceEEEEEEECCCCCHHHHHHHH
Confidence 7777765555442 45789999999999999888999888887776677777444 4 5778888888899999999999
Q ss_pred HHHHHHHHhHh----CCCCCceEEEEEecCCC-Cceec
Q 033597 79 STIAEILQTKL----LIDSSRFYIKLYDVERS-FFGFN 111 (115)
Q Consensus 79 ~~i~~~l~~~L----gv~~~ri~i~f~~~~~~-~~g~~ 111 (115)
+++++.+.+.| |.++..+.|.+.|++++ +|+.+
T Consensus 81 ~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~~~~~~~ 118 (125)
T 1otg_A 81 EMLFELIKTHFAALMESRLLALSFEIEELHPTLNFKQN 118 (125)
T ss_dssp HHHHHHHHHHTHHHHTTSEEEEEEEEEECCSSSEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCceEEEEEEEEcCCccCHHHh
Confidence 99999999998 66999999999999999 99876
No 31
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=99.37 E-value=9.4e-13 Score=73.40 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCc--eEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGV--PIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~--~~~~gg~~ 55 (115)
||+++|+++...+++++++|.++|++++++.+|+|+++++|.+.+.. .+.+||..
T Consensus 1 MP~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 57 (64)
T 3abf_A 1 MVVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVL 57 (64)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 99999999999999999999999999999999999999999998754 59999864
No 32
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=99.33 E-value=3.1e-12 Score=71.30 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=51.7
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCc
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGS 113 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~ 113 (115)
++++..+.|++.|||+++++++++.+.+.||.|++.|.|.++|++.+|||++|.
T Consensus 2 i~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~ 55 (70)
T 3ej9_B 2 FIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGR 55 (70)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTC
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeee
Confidence 577888999999999999999999999999999999999999999999999996
No 33
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=99.33 E-value=1.7e-12 Score=75.05 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=47.9
Q ss_pred EEEEEeecCC-ChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCcee
Q 033597 60 YGELISIGSL-GPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGF 110 (115)
Q Consensus 60 ~v~i~~~~~~-~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~ 110 (115)
+++|....++ ++++++++++++++.+.+.||+|++++||.|+++++++||+
T Consensus 2 ~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~ 53 (76)
T 1gyx_A 2 HIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA 53 (76)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE
Confidence 6788877776 99999999999999999999999999999999999999987
No 34
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=99.23 E-value=1.7e-11 Score=67.76 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=50.0
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
||+++|+++...+++++++|.+.+++++++.+|+|+++++|.+.+ ...+.+||..
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~ 59 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVR 59 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 999999999999998899999999999999999999999998875 4678888854
No 35
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=99.12 E-value=1.5e-10 Score=66.11 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
||+++|++....+++++++|.+.+++++++.+|+|++.++|.+.+ ...+.+||..
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 57 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGIS 57 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 999999999889999999999999999999999999999988875 5789999865
No 36
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=98.96 E-value=1.7e-09 Score=62.37 Aligned_cols=55 Identities=11% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEe--CCceEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILIN--GGVPIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~~~~gg~~ 55 (115)
||+++|+.....+.+++++|.+.+++++++.+|.|++.+.|.+. +...+.+||..
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~~ 57 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGEH 57 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 99999999888899999999999999999999999998888776 45789999864
No 37
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=98.81 E-value=8.9e-09 Score=66.23 Aligned_cols=55 Identities=7% Similarity=-0.014 Sum_probs=50.4
Q ss_pred EEEEEeecCC-ChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 60 YGELISIGSL-GPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 60 ~v~i~~~~~~-~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
.++|....++ ++++++++++++++.+.+.||+|++.+++.|+++++++|+++|..
T Consensus 2 ~~~I~~~~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~ 57 (148)
T 3n4h_A 2 TYTCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQS 57 (148)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEE
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEE
Confidence 4577777665 999999999999999999999999999999999999999999964
No 38
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=98.80 E-value=2.2e-08 Score=55.31 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=48.1
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
|+|+|+. ...+.+++++|.+.+++++++.+|+|.+.++|.+.+ ...+.+||..
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~ 55 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKL 55 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEE
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEE
Confidence 8999999 889999999999999999999999999999998875 4688999854
No 39
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=98.76 E-value=3.2e-08 Score=62.35 Aligned_cols=54 Identities=4% Similarity=-0.098 Sum_probs=50.3
Q ss_pred eEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 59 AYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 59 ~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
-+++|....++++++++++++++++.+.+.||.|++++|+.|+++++++|+++|
T Consensus 2 P~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g 55 (131)
T 2aal_A 2 PLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLED 55 (131)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCC
Confidence 367777777799999999999999999999999999999999999999999998
No 40
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=98.71 E-value=5.2e-08 Score=54.56 Aligned_cols=54 Identities=13% Similarity=0.290 Sum_probs=48.4
Q ss_pred CeEEEEeCC---CCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 2 PTLNLYTNV---PVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 2 P~i~i~tn~---~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
|+++|+.-. ..+.+++++|.+.+++++++.+|+|.+.++|.+.+ ...+.+||..
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 59 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES 59 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 999999988 88999999999999999999999999988888864 5788899854
No 41
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=98.70 E-value=4.3e-08 Score=62.36 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=49.3
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
+++|....++++++++++++++++.+.+.||+|++++++.|+++++++|.+++
T Consensus 2 ~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~ 54 (136)
T 3mlc_A 2 LIRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAED 54 (136)
T ss_dssp EEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECC
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccc
Confidence 57788888899999999999999999999999999999999999999997664
No 42
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=98.68 E-value=7.2e-08 Score=53.84 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=41.2
Q ss_pred EEEEeecC--CChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCC
Q 033597 61 GELISIGS--LGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSF 107 (115)
Q Consensus 61 v~i~~~~~--~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~ 107 (115)
+++...+. +++|||++|++++++.+++.||-+|++++|.|.+++++|
T Consensus 3 lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV~~en 51 (72)
T 3mb2_B 3 LEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIVSPEN 51 (72)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEECCGGG
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCccc
Confidence 44544443 899999999999999999999999999999999998876
No 43
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=98.66 E-value=7.7e-08 Score=62.86 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=53.6
Q ss_pred CceeEEEEEeecC-CChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 56 APAAYGELISIGS-LGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 56 ~p~~~v~i~~~~~-~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
..+-+++|....+ +++++++++++++++.+.+. |+|++.+.|.|+++++++|+.+|..
T Consensus 20 ~~MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~ 78 (161)
T 3c6v_A 20 QGMPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQ 78 (161)
T ss_dssp CSCCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEE
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcc
Confidence 4588999988877 59999999999999999999 9999999999999999999999964
No 44
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=98.65 E-value=6.1e-08 Score=53.92 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=48.3
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
|+++|+.-...+++++++|.+.+++++++.+|+|.+.+.|.+.+ ...+.+||..
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 56 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRS 56 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 89999998889999999999999999999999999988887764 5788899864
No 45
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=98.64 E-value=7.1e-08 Score=52.71 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=47.5
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
|+++|+.....+++++++|.+.+++++++.+|.|.+.+.|.+.+ ...+.+||..
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 56 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGKR 56 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEE
Confidence 89999987778889999999999999999999999998888864 5578888754
No 46
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=98.59 E-value=1.4e-07 Score=51.56 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=47.3
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
|+++|+.-...+++++++|.+.+++++++.+|.|.+.+.|.+.+ ...+.+||..
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~ 56 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEP 56 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEE
Confidence 89999987777889999999999999999999999988888864 5578888754
No 47
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=98.56 E-value=2.3e-07 Score=59.87 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=47.0
Q ss_pred EEEee-cCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCc
Q 033597 62 ELISI-GSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGS 113 (115)
Q Consensus 62 ~i~~~-~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~ 113 (115)
+|... +.++++++++++++|++.+.+.+|+|+++++|.|+++++++|+.+|.
T Consensus 4 ~i~~~~~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~ 56 (149)
T 3mf7_A 4 MVYVSQDRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGV 56 (149)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCE
Confidence 44444 56999999999999999999999999999999999999999999875
No 48
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=98.53 E-value=6e-08 Score=60.80 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=48.7
Q ss_pred EEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 61 GELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 61 v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
++|....++++++++++.+++++.+.+.||.|++++|+.+++.++++|.++|
T Consensus 2 v~I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg 53 (128)
T 1mww_A 2 ITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPF 53 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCC
Confidence 5666677789999999999999999999999999999999999999999998
No 49
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=98.28 E-value=2.6e-06 Score=47.44 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=48.3
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEe--CCceEEeccCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILIN--GGVPIAFAGTE 55 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~~~~gg~~ 55 (115)
|+++++.--..+++||++|..++++++++.+|-|.+.|.|.+. +..++..||.-
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~~ 56 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGRI 56 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTCC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeeeE
Confidence 8999999999999999999999999999999999998777664 57788888764
No 50
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=98.26 E-value=2.8e-06 Score=52.99 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=43.6
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCC--ceEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGG--VPIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~~~~gg~~ 55 (115)
||+++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. ..+.+||..
T Consensus 57 ~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (125)
T 2wkb_A 57 YCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSAQNFAFSGSL 113 (125)
T ss_dssp CEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC----CEEEEGGG
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeEECCEE
Confidence 6889999877678889999999999999999999999999999764 478888765
No 51
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=98.18 E-value=5.3e-06 Score=50.84 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=46.2
Q ss_pred eEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 59 AYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 59 ~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
.+++|....+++++ ++++.+++++.+.+.||.|++.+.|.++ +..+|.++|++
T Consensus 2 P~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~~~v~~~--~~~~~~~~g~~ 54 (115)
T 2xcz_A 2 PLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKYVMTSLQ--CGVPMTFSGNT 54 (115)
T ss_dssp CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGGCEEEEE--CSCCCCBTTBC
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHHEEEEEE--CCCceEECCCC
Confidence 36777777678889 9999999999999999999999998887 45899999974
No 52
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=98.15 E-value=5.4e-06 Score=50.60 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=47.1
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGT 54 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~ 54 (115)
|++++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+ ...+.+||+
T Consensus 56 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 111 (113)
T 1hfo_A 56 AAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGT 111 (113)
T ss_dssp CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeeeCCE
Confidence 568889887778888899999999999999999999999999976 448888885
No 53
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=98.15 E-value=5.6e-06 Score=50.54 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=47.2
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGT 54 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~ 54 (115)
|.+++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+...+.+||+
T Consensus 57 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~wg~~G~ 110 (112)
T 3b64_A 57 VACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 110 (112)
T ss_dssp CEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEhhHeeECCE
Confidence 467888877667888899999999999999999999999999987668888875
No 54
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=98.13 E-value=6.4e-06 Score=47.01 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=41.1
Q ss_pred CeEEEEeCCCC-CccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCC
Q 033597 2 PTLNLYTNVPV-DAVIASDILRDATKAVAKILGKSESYVMILINGG 46 (115)
Q Consensus 2 P~i~i~tn~~~-~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~ 46 (115)
|+++|+..... +.+++++|.+.+++++++.+|.|.+.+.|.+.+.
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~ 46 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQI 46 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEe
Confidence 89999988776 8899999999999999999999999999988763
No 55
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=98.07 E-value=9.7e-06 Score=49.64 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=47.1
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCC--ceEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGG--VPIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~~~~gg~~ 55 (115)
+.+++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. ..+.+||..
T Consensus 57 ~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t 113 (115)
T 1uiz_A 57 CAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGST 113 (115)
T ss_dssp CEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeeCCEE
Confidence 4578888777788888999999999999999999999999999764 488888853
No 56
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=98.00 E-value=1.6e-05 Score=49.06 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=47.1
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCC--ceEEeccCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGG--VPIAFAGTE 55 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~~~~gg~~ 55 (115)
+++++|+.....+.+++++|.+.+++++++.+|.|.+.+.|.+.+. ..+.+||..
T Consensus 57 ~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (119)
T 2os5_A 57 VAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTT 113 (119)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHeeECCEE
Confidence 4578888877788888999999999999999999999999998764 478888754
No 57
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=97.94 E-value=1.6e-05 Score=49.47 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEe--CCceEEeccC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILIN--GGVPIAFAGT 54 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~--~~~~~~~gg~ 54 (115)
||+++|.-- ..++++++++.+.+++++++. +.|.+.|.|.+. +...++.||.
T Consensus 67 MP~VeV~~f-gRt~EqK~~la~~IT~av~~~-~~~~e~V~Vif~el~~~~y~~gG~ 120 (122)
T 1u9d_A 67 YPMVEVLWF-GREQQTQDQIAQVITDQIRQL-LGADSHLAVVFIPLQRTAYYLDGQ 120 (122)
T ss_dssp CCEEEEEES-CCCHHHHHHHHHHHHHHHHHH-HCTTCCCEEEEEECCGGGCEETTE
T ss_pred CCEEEEEEc-CCCHHHHHHHHHHHHHHHHHh-CCCCceEEEEEEecCHHHeeeCCE
Confidence 999999999 689999999999999999999 788888777775 3556777764
No 58
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=97.58 E-value=0.00032 Score=44.14 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=50.8
Q ss_pred CCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 55 EAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 55 ~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
..|+-++++..-.+.+.++.+++.+++++.+.+.+|.|.+.+.|.+++ ...|-++|++
T Consensus 18 ~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~--~~~m~fgGs~ 75 (133)
T 3fwt_A 18 GSHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSD--KTPISFQGST 75 (133)
T ss_dssp CEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEEC--SCCCCBTTBC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEEC--CceEEECCCC
Confidence 468889999988778888899999999999999999999999998886 4688888863
No 59
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=97.58 E-value=0.00017 Score=45.59 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=34.3
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCC--ceEEeccCC
Q 033597 3 TLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGG--VPIAFAGTE 55 (115)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~~~~gg~~ 55 (115)
+++|+.....+.++++++.+.|++.+.+.+|.|.+++.|.+.+- ..+.++|++
T Consensus 80 ~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~T 134 (135)
T 3t5s_A 80 FVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYISFNEAKGHNWGFNGST 134 (135)
T ss_dssp EEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC------------
T ss_pred EEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEEeccccCcccccCCCc
Confidence 46777766678888999999999999999999999999999874 677777763
No 60
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=97.54 E-value=0.00025 Score=44.68 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=45.1
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccC
Q 033597 3 TLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGT 54 (115)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~ 54 (115)
+++|+.....+.++++++.+.|++.+.+.+|.|.+++.|.+.+-..+.++|+
T Consensus 80 ~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d~~~wG~nG~ 131 (133)
T 3fwu_A 80 CVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 131 (133)
T ss_dssp EEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEHHHEeeCcE
Confidence 4677776667777789999999999999999999999999988778888775
No 61
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=97.51 E-value=0.00016 Score=44.16 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=43.9
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccC
Q 033597 3 TLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGT 54 (115)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~ 54 (115)
+++|+.-...+.++++++.+.+++++.+.+|+|.+++.|.+.+ ...+.++|+
T Consensus 59 ~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~ 112 (114)
T 4dh4_A 59 FIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTTFTNKSPSEWAMGDR 112 (114)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGCEETTE
T ss_pred EEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEeCCHHHeEECCE
Confidence 5677766667778899999999999999999999999999976 467777775
No 62
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=97.31 E-value=0.00074 Score=41.14 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=44.1
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCC--ceEEeccCC
Q 033597 3 TLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGG--VPIAFAGTE 55 (115)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~--~~~~~gg~~ 55 (115)
+++|+.-...+.++++++.+.|++.+.+.+|.|.+++.|.+.+- ..+-++|++
T Consensus 58 ~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~t 112 (114)
T 3djh_A 58 LCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNST 112 (114)
T ss_dssp EEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeECCEE
Confidence 45677666667777899999999999999999999999999864 777777753
No 63
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=96.89 E-value=0.0038 Score=34.76 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=35.4
Q ss_pred CeEEEEeCC--CCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeC
Q 033597 2 PTLNLYTNV--PVDAVIASDILRDATKAVAKILGKSESYVMILING 45 (115)
Q Consensus 2 P~i~i~tn~--~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~ 45 (115)
|.++|-... +.+.+|+.+|.++++..+++++|.|.+++-|.+.+
T Consensus 1 p~lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~E 46 (72)
T 3mb2_B 1 PMLEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQI 46 (72)
T ss_dssp CEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEE
T ss_pred CceEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEe
Confidence 666665543 46778899999999999999999999987776643
No 64
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=96.43 E-value=0.0068 Score=37.06 Aligned_cols=53 Identities=15% Similarity=0.021 Sum_probs=39.4
Q ss_pred eEEEEeCCCCCc-cCHHHHHHHHHHHHHHHhCCCcceeEEEEeC--CceEEeccCC
Q 033597 3 TLNLYTNVPVDA-VIASDILRDATKAVAKILGKSESYVMILING--GVPIAFAGTE 55 (115)
Q Consensus 3 ~i~i~tn~~~~~-~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~--~~~~~~gg~~ 55 (115)
+++|+.-...+. ++.+++.+.|++.+.+.+|.|.+++.|.+.+ ...+-++|++
T Consensus 58 ~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~~~~~~G~nG~t 113 (117)
T 3kan_A 58 QLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTV 113 (117)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCEETTEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeeCCEE
Confidence 345555444433 4588999999999999999999999999976 4445666653
No 65
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=96.33 E-value=0.0032 Score=39.05 Aligned_cols=45 Identities=4% Similarity=-0.121 Sum_probs=40.0
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHh----CCCcceeEEEEeC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKIL----GKSESYVMILING 45 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~----~kp~~~i~v~~~~ 45 (115)
||++.|+.-...++++++++.+.+.+++++.+ +.+...+.|.+.+
T Consensus 60 fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E 108 (125)
T 1otg_A 60 FVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEE 108 (125)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEE
Confidence 78999999999999999999999999999987 5588888888875
No 66
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=90.35 E-value=1.1 Score=29.05 Aligned_cols=82 Identities=10% Similarity=0.002 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhC----CCcceeEEEEeCCceEEec-cCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHh-C
Q 033597 17 ASDILRDATKAVAKILG----KSESYVMILINGGVPIAFA-GTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKL-L 90 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~----kp~~~i~v~~~~~~~~~~g-g~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~L-g 90 (115)
..++...+..-++..+. .-..+|.+.+.... -.|. ....|.|-|-|+.-++. .......+|..++.... |
T Consensus 82 ~~~~~rale~ELartI~~i~gV~~ArVhl~lP~~~-~~f~~~~~~~sASV~l~~~~g~---l~~~qv~~I~~LVa~SV~g 157 (170)
T 2y9j_Y 82 KARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDA-GENGRPPKPVHLSALAVYERGS---PLAHQISDIKRFLKNSFAD 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEEEEEEEEECCCC-CBTTBCCCCEEEEEEEEECTTC---CCGGGHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEEEEEEcCCCc-CcccccCCCCcEEEEEEECCCC---CCHHHHHHHHHHHHHhcCC
Confidence 44566666666666554 33334555444331 3343 33468888888876553 22345677777777765 7
Q ss_pred CCCCceEEEEEe
Q 033597 91 IDSSRFYIKLYD 102 (115)
Q Consensus 91 v~~~ri~i~f~~ 102 (115)
+++++|.|.+.+
T Consensus 158 L~~e~VtVv~~~ 169 (170)
T 2y9j_Y 158 VDYDNISVVLSE 169 (170)
T ss_dssp CCGGGEEEEEEE
T ss_pred CCccceEEEEec
Confidence 999999998875
No 67
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=90.26 E-value=1.7 Score=26.16 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=35.5
Q ss_pred eeEEEEeCCce-EEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 38 YVMILINGGVP-IAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 38 ~i~v~~~~~~~-~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
.+.|.+.|+.. -.+.|-.+...-+.+++ +-..-+-.+++.++|.+.||||+.+|.|.
T Consensus 16 ~l~v~V~P~A~r~~I~g~~~~~LkV~v~A-----pP~dGkAN~ali~~LAk~l~V~ks~V~Iv 73 (108)
T 1n91_A 16 VLRLYIQPKASRDSIVGLHGDEVKVAITA-----PPVDGQANSHLVKFLGKQFRVAKSQVVIE 73 (108)
T ss_dssp EEEEEEECSSSSCEEEEECSSCEEEECCC-----CSSHHHHHHHHHHHHHHHTCCCTTTEEES
T ss_pred EEEEEEeeCCCcceeecccCCEEEEEEec-----CCCCChHHHHHHHHHHHHhCCccceEEEE
Confidence 35566666432 23344444444444432 23345566788999999999999999874
No 68
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=89.70 E-value=0.48 Score=30.03 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=34.6
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCc---ceeEEEEeC
Q 033597 3 TLNLYTNVPVDAVIASDILRDATKAVAKILGKSE---SYVMILING 45 (115)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~---~~i~v~~~~ 45 (115)
++.|+.-...+.++++++.+.|.+++.+.++.+. ..+.|.+.+
T Consensus 84 hV~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~E 129 (146)
T 3e6q_A 84 HACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVRE 129 (146)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEEE
Confidence 3566677788999999999999999999999765 366666654
No 69
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=79.97 E-value=2.1 Score=24.92 Aligned_cols=42 Identities=14% Similarity=0.106 Sum_probs=31.8
Q ss_pred cCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCC
Q 033597 53 GTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSS 94 (115)
Q Consensus 53 g~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ 94 (115)
+.+.+.+++.+......+.+.-.++.+.+.+.+.+.+|+++.
T Consensus 42 ~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~ 83 (109)
T 3lax_A 42 SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR 83 (109)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred cceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccc
Confidence 345677777776444456677788999999999999999873
No 70
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=78.27 E-value=1.9 Score=32.36 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 73 VNGKLSSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 73 ~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
-|++-+.---++|.+.||+|++|+||++..-
T Consensus 103 FK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~ 133 (465)
T 1yfs_A 103 FKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD 133 (465)
T ss_dssp CHHHHHHHHHHHHHHTSCCCGGGEEEEEETT
T ss_pred hHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC
Confidence 3566666778889899999999999999864
No 71
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=74.41 E-value=2.9 Score=29.81 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC--CCCceecCc
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE--RSFFGFNGS 113 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~--~~~~g~~G~ 113 (115)
..-.+...+.++||+|.++|.|..-|-+ +..+|..|+
T Consensus 49 ~~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~~T~gS 87 (330)
T 3hrd_B 49 SGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSAS 87 (330)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcch
Confidence 4456677888999999999999998764 344454443
No 72
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.15 E-value=4 Score=22.56 Aligned_cols=24 Identities=0% Similarity=0.016 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 30 V~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 30 ILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp HHHHHHHHHHHTCCCTTTEEEEET
T ss_pred HHHHHHHHHHHhCCChHHEEEEEC
Confidence 456777788889999999999874
No 73
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=70.71 E-value=18 Score=23.21 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecC-------CChhhhHHHHHHHHHHHHhHh
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGS-------LGPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~-------~~~~~~~~~~~~i~~~l~~~L 89 (115)
.+.|.+.+.+.+.+.+|.+...+- .......-.+.-|++++|+-.+.. .+++..++++++|.+-+.+-+
T Consensus 101 s~~lA~~i~~~l~~~~g~~~rgvk----~~~~~vLr~t~~PavLvE~gFisN~~d~~~l~~~~~~~~~A~ai~~gI~~y~ 176 (179)
T 1jwq_A 101 SKAFANVMHKYFAPATGLTDRGIR----YGNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYL 176 (179)
T ss_dssp GHHHHHHHHHHHHHHHCSCEEEEE----ECCCHHHHSCSSCEEEEEEEETTSHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcc----cCcchhccCCCCCEEEEEecCCCCHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 478888999989888885543322 222223335678999999987643 245566899999999988877
Q ss_pred CC
Q 033597 90 LI 91 (115)
Q Consensus 90 gv 91 (115)
+.
T Consensus 177 ~~ 178 (179)
T 1jwq_A 177 DV 178 (179)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 74
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=69.71 E-value=4.2 Score=23.21 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=25.7
Q ss_pred HHHHHHHHhHhCCCCCceEEEEEecCCCCce
Q 033597 79 STIAEILQTKLLIDSSRFYIKLYDVERSFFG 109 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g 109 (115)
..+.+.|.+.|+++++.+-+.|.+-+...|-
T Consensus 27 ~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v 57 (83)
T 1oey_A 27 SQVRDMVSKKLELRLEHTKLSYRPRDSNELV 57 (83)
T ss_dssp HHHHHHHHHHTTCCGGGCCEEECCTTCSSCE
T ss_pred HHHHHHHHHHhCCCcceeEEEeeCCCCCCee
Confidence 4577888899999999999999997666653
No 75
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=69.02 E-value=14 Score=21.30 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCC--ChhhhHHHHHHHHHHHHhHhCCCCCceEEEE
Q 033597 23 DATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSL--GPSVNGKLSSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 23 ~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~--~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
++.+.+.+..+..+.++.. +... ++.+...+++++ -+.. ..+...++.+.+.+.+.+.+|+++ .|.|
T Consensus 18 eIE~~l~~~p~v~~~~~v~-v~~~-----~~~e~l~~~ve~--~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~---~v~~ 86 (109)
T 3gxs_A 18 QIETILLQFKELGSDYLIT-LETA-----ESNDEMTVEVEL--SQLFTDDYGRLQALTREITRQLKDEILVTP---RVKL 86 (109)
T ss_dssp HHHHHHHTCTTEEEEEEEE-EEEE-----TTEEEEEEEEEE--CTTCCCCHHHHHHHHHHHHHHHHHHHSSCC---EEEE
T ss_pred HHHHHHHhCCCcCCcEEEE-EEcC-----CCceEEEEEEEE--cCccccchhHHHHHHHHHHHHHHHhhCCce---EEEE
Confidence 4455555554543333332 3221 234567788877 2322 134567889999999999999987 4555
Q ss_pred Ee
Q 033597 101 YD 102 (115)
Q Consensus 101 ~~ 102 (115)
.+
T Consensus 87 v~ 88 (109)
T 3gxs_A 87 VP 88 (109)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 76
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=66.74 E-value=23 Score=25.38 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEe-ecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 25 TKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELIS-IGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 25 ~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~-~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
++.+++.+|.+ +.+|....++-+..+-.+.-| ++- ...++++.-.+....+.+.|.+.+|++.-||-|.
T Consensus 141 Te~la~~~g~~-~~~mml~~~~lrv~lvTtHip-----L~~v~~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~ 210 (334)
T 3lxy_A 141 TEFFADRSHCQ-RVVMMLATEELRVALATTHLP-----LLAVPGAITQASLHEVITILDNDLKTKFGITQPQIYVC 210 (334)
T ss_dssp HHHHHHHHTCS-CCEEEEEETTEEEEESSCSCC-----GGGHHHHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEE
T ss_pred HHHHHHHhCCC-CceEEEEcCCceEEEecCCCc-----HHHHhhhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 45566666642 244444444333333322222 111 1447889989999999999999999998888765
No 77
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=65.45 E-value=6.2 Score=29.41 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHH--hHhCCCCCceEEEEEe
Q 033597 74 NGKLSSTIAEILQ--TKLLIDSSRFYIKLYD 102 (115)
Q Consensus 74 ~~~~~~~i~~~l~--~~Lgv~~~ri~i~f~~ 102 (115)
|++-+.---++|. +.||+|++|+||++..
T Consensus 103 K~eAI~~Awe~LT~~~~lgl~~erL~vTvf~ 133 (441)
T 3hy0_A 103 KLDAILFAWLLLTSEKWFALPKERLWVTVYE 133 (441)
T ss_dssp HHHHHHHHHHHHHCTTTTCCCGGGEEEEEET
T ss_pred HHHHHHHHHHHhCCCCccCCCHHHeEEEEeC
Confidence 4455555567888 5599999999999664
No 78
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=64.55 E-value=5 Score=25.74 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 76 KLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
-+..+|.+.|.+.|+++.++|.|.-+.. +..|+-|
T Consensus 109 p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 143 (159)
T 1t0a_A 109 PHIEDMRQVLAADLNADVADINVKATTT--EKLGFTG 143 (159)
T ss_dssp GGHHHHHHHHHHHTTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEecC--CCCCccc
Confidence 3567889999999999999999988876 4555444
No 79
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=63.84 E-value=5.2 Score=25.68 Aligned_cols=35 Identities=23% Similarity=0.047 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 76 KLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
-+..+|.+.|.+.|+++.++|.|.-+.- +..|+-|
T Consensus 110 p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 144 (160)
T 2pmp_A 110 PHKETIRSNLSKLLGADPSVVNLKAKTH--EKVDSLG 144 (160)
T ss_dssp GGHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCcceEEEEEecC--CCCCccc
Confidence 3668889999999999999999988866 4555543
No 80
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=63.23 E-value=8.2 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
-.+.+.+.+++..++|+++..+.|..
T Consensus 25 tV~~lK~~i~~~~~ip~~~qrL~~~g 50 (85)
T 3n3k_B 25 TIENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp BHHHHHHHHHHHHCCCGGGEEEEETB
T ss_pred cHHHHHHHHHHHHCCCHHHEEEEECC
Confidence 35567777888899999999998853
No 81
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=63.05 E-value=5.5 Score=25.56 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 76 KLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
-+..+|.+.|.+.|+++.++|.|.-+.. +..|+-|
T Consensus 108 p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 142 (160)
T 1gx1_A 108 PHIPQMRVFIAEDLGCHMDDVNVKATTT--EKLGFTG 142 (160)
T ss_dssp GGHHHHHHHHHHHTTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEccC--CCCCccc
Confidence 3567889999999999999999988776 4555544
No 82
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=62.24 E-value=5.6 Score=25.58 Aligned_cols=89 Identities=15% Similarity=0.010 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccC-------------CCce--eEEEEEeecCCChhhhHHHHHHHH
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGT-------------EAPA--AYGELISIGSLGPSVNGKLSSTIA 82 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~-------------~~p~--~~v~i~~~~~~~~~~~~~~~~~i~ 82 (115)
+-++..+++++-.+.+.+.= =-++.+...-+-|-+ ..-. .-+.++.++..+. -.-+..+|.
T Consensus 44 DVllHAi~DAlLGA~~lGDI--G~~Fpdtdp~~kga~S~~lL~~~~~~v~~~G~~i~NvD~tii~q~PK--l~p~~~~m~ 119 (162)
T 3re3_A 44 DVLIHALCDAILGALGLGDI--GKHFLDTDNQFKNIDSKFFLAEIKKMLDKKQYSISNIDCTIIAQAPK--MLPHIEKMR 119 (162)
T ss_dssp CHHHHHHHHHHHHHTTCCCH--HHHC-------CCSCHHHHHHHHHHHHHHTTCEEEEEEEEEECSSSC--CGGGHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCC--cccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCCc--chhHHHHHH
Confidence 56777777777777764421 111222222222311 1122 2344444554321 233577889
Q ss_pred HHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 83 EILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 83 ~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
+.|.+.|++++++|.|.-+.. +..|+-|
T Consensus 120 ~~la~~L~~~~~~V~vKAtT~--E~LGf~G 147 (162)
T 3re3_A 120 ACLANILEIQISQINIKATTT--ERLGFIG 147 (162)
T ss_dssp HHHHHHHTSCGGGEEEEEECC--SSCHHHH
T ss_pred HHHHHHHCCCCceEEEEEecC--CCcCCCc
Confidence 999999999999999998876 4555443
No 83
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=61.30 E-value=9.6 Score=20.06 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 v~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 23 IENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456667777888999999999884
No 84
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=60.57 E-value=6.4 Score=25.83 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
+..+|.+.|.+.|++++++|.|.-+.. +..|+-|
T Consensus 131 ~~~~mr~~la~~L~i~~~~VnVKATT~--E~LGf~G 164 (183)
T 3f0d_A 131 HIDAMRANIAADLDLPLDRVNVKAKTN--EKLGYLG 164 (183)
T ss_dssp GHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHHHHHHCCCcceEEEEEecC--CCCccCc
Confidence 578889999999999999999998876 4555543
No 85
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=60.57 E-value=29 Score=24.78 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEe-ecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 24 ATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELIS-IGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~-~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
=++.+++..|.+ +.+|....++-+..+-.+.-| ++- ...++++.-.+....+.+.|.+.+|+..-||.|.
T Consensus 135 hTE~la~~~g~~-~~~Mml~~~~LrV~lvT~Hip-----L~~V~~~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~ 205 (328)
T 1yxo_A 135 HTEFLADLTHTA-QVVMMLATRGLRVALATTHLP-----LREVADAISDERLTRVARILHADLRDKFGIAHPRILVC 205 (328)
T ss_dssp HHHHHHHHTTCS-CCEEEEEETTEEEEESSCSCC-----HHHHHHHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred HHHHHHHHhCCC-CeEEEEecCCcEEEEeccCcc-----HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 356666666642 344444444333333322222 111 2337888888888899999999999999997663
No 86
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=60.06 E-value=10 Score=19.91 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 v~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 23 VERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 456677777889999999999874
No 87
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=59.53 E-value=9.1 Score=20.75 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+.+.+++..++|+++..+.|.
T Consensus 26 V~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 26 IENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 566677778889999999998874
No 88
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=59.33 E-value=5.7 Score=23.35 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+.+.+++..|+|+++..+.|.
T Consensus 57 TV~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 57 TIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp BHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred CHHHHHHHHHHHHCcCcccEEEEEC
Confidence 4566777788889999999999874
No 89
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=59.00 E-value=14 Score=26.04 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=30.2
Q ss_pred eeEEEEEe--ec-CCChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 58 AAYGELIS--IG-SLGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 58 ~~~v~i~~--~~-~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
+++|-.+. -| ..+.+.+.++++.+.+.+.++.||++++|++
T Consensus 134 a~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~Iil 177 (300)
T 3k13_A 134 AATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIF 177 (300)
T ss_dssp CEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEE
T ss_pred CeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 45555444 22 2467778889999888887789999999986
No 90
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.19 E-value=13 Score=20.77 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-...|.+.|++..|+|+++..+.|.
T Consensus 33 TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 33 VVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp BHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred cHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 3466777888889999999999873
No 91
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=57.39 E-value=33 Score=24.53 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEe-ecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 24 ATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELIS-IGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 24 l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~-~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
=++.+++.+|.+ +.+|....++-+..+-.+.-| ++- ...++++.-.+..+.+.+ |.+.+|+..-||.|.
T Consensus 142 HTE~la~~~g~~-~~~Mml~~~~LrV~lvT~Hip-----L~~V~~~it~e~i~~~i~~~~~-L~~~fgi~~PrIaV~ 211 (330)
T 2hi1_A 142 HTELLATLTHSR-DYAMVLYTDKLKVIHVSTHIA-----LRKFLDTLSTARVETVIGIADT-FLKRVGYVKPRIAVA 211 (330)
T ss_dssp HHHHHHHHTTCC-CCEEEEECSSCEEEESCCSSC-----HHHHHHHCCHHHHHHHHHHHHH-HHHHTTCSSCEEEEE
T ss_pred HHHHHHHHhCCC-CeEEEEecCCcEEEEeecCcc-----HHHHHHhcCHHHHHHHHHHHHH-HHHHcCCCCCCEEEE
Confidence 356666666642 344443333322222222222 111 234788888888888888 999999999997663
No 92
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=57.28 E-value=14 Score=20.49 Aligned_cols=24 Identities=8% Similarity=-0.075 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 34 V~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 34 VKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp HHHHHHHHHHHHCCCTTTCEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 456677777889999999999874
No 93
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.80 E-value=15 Score=19.68 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 30 V~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 30 VSTLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp HHHHHHHHHHHTCCCTTTCEEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 456667777889999999999874
No 94
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.99 E-value=16 Score=20.03 Aligned_cols=24 Identities=4% Similarity=-0.111 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 32 V~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 32 IEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp HHHHHHHHHHHSCCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 456677788889999999999874
No 95
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=55.03 E-value=19 Score=20.72 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecC------CChhhhHHHHHHHHHHHHhHh
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGS------LGPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~------~~~~~~~~~~~~i~~~l~~~L 89 (115)
.++|+.+|++++...-++....|.++.-.-..-.-.+.+.| ++|..+.-.. ..+++-.+|.++.++.+...+
T Consensus 5 nd~FL~~L~~lf~~~~~~~~gSV~lT~KR~~~~~~~~~~~p-cLiRAt~gkK~KiSTvV~~~~l~~F~~~Y~~v~K~~M 82 (91)
T 2w9j_A 5 NEEFLKKLTDLLQTHQSKGTGSVYLSQKXNPVDEGEGSSAS-VLIRAKSGAAEKISTVVELDYFTDFFQSYAEVXKGQI 82 (91)
T ss_dssp HHHHHHHHHHHHHCC-------CCCEEEEEEECC-----CE-EEEEEECTTSCEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEEecCCCccCCCCCC-EEEEEecCCCCEEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 58999999999988765555556665532000000233456 4554443211 247888899999988887766
No 96
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=54.78 E-value=39 Score=21.63 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhC----CCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHh-CCCC
Q 033597 19 DILRDATKAVAKILG----KSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKL-LIDS 93 (115)
Q Consensus 19 ~~~~~l~~~~a~~~~----kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~L-gv~~ 93 (115)
++...+..-++..+. .-..+|.+.+.. .....|.|-|-|+.-.+.+..... . +|..++.... |+++
T Consensus 86 ~~~~alegELartI~~i~~V~~ARVhl~lP~------~~~~~~sASV~l~~~~g~~l~~~q--~-~I~~LVa~SV~gL~~ 156 (171)
T 1yj7_A 86 KINYLKEQDIERLLSKIPGVIDCSVSLNVNN------NESQPSSAAVLVISSPEVNLAPSV--I-QIKNLVKNSVDDLKL 156 (171)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEEEEEEEC-------------CEEEEEEEECTTCCCGGGH--H-HHHHHHHHHSTTCCG
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEEEEECCC------CCCCCceEEEEEEeCCCCCCcHhH--H-HHHHHHHHhcCCCCc
Confidence 444455555555544 333344443332 123467788888766554433332 2 4888888776 7999
Q ss_pred CceEEEEEecCC
Q 033597 94 SRFYIKLYDVER 105 (115)
Q Consensus 94 ~ri~i~f~~~~~ 105 (115)
++|.|.-.+-.+
T Consensus 157 enVtVvdq~~~~ 168 (171)
T 1yj7_A 157 ENISVVIKSSSG 168 (171)
T ss_dssp GGEEEEEEECC-
T ss_pred ccEEEEeCCCCC
Confidence 999998877654
No 97
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=54.75 E-value=12 Score=21.77 Aligned_cols=47 Identities=2% Similarity=-0.079 Sum_probs=30.7
Q ss_pred CCceeEEEEEeecCCC---hhhhHHHHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 55 EAPAAYGELISIGSLG---PSVNGKLSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 55 ~~p~~~v~i~~~~~~~---~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
..|...|.|+...+.+ .-.-......+-+.+++..|+|+++..+.|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 3566666666544322 1122345677788899999999999999874
No 98
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=54.47 E-value=15 Score=19.65 Aligned_cols=24 Identities=4% Similarity=0.012 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 27 v~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 27 VEELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 455666777889999999999873
No 99
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=54.18 E-value=32 Score=20.48 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChh-hhHHHHHHHHHHHHhHhCCCCCceEEEEEecC
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPS-VNGKLSSTIAEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~-~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
..+++.++.++..-.+.+. ++.+. ...|.++-+......+-+. ....+..-+.++|++.+|++..+..-.+.-..
T Consensus 23 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~ylp~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~~ 98 (143)
T 3lhe_A 23 EIIAEKLGISVGDFVYKII---RLRII-HSIPTIMEHTWMPISVIPGVEVSVLEESIYSHIQNKLGLQVGTSVVRVKGIR 98 (143)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEEE-TTEEEEEEEEEEETTTSCCCC---------------CCCCEEEEEEEEEEEC
T ss_pred HHHHHhcCCCCCCEEEEEE---EEEEE-CCcEEEEEEEEeeHHHcCCCCHHHhhhhHHHHHHHHcCCCeeEEEEEEEEEC
Confidence 4578888877664444443 23332 3467777666654432111 12234567899999999999888877776554
Q ss_pred C
Q 033597 105 R 105 (115)
Q Consensus 105 ~ 105 (115)
+
T Consensus 99 a 99 (143)
T 3lhe_A 99 P 99 (143)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=54.15 E-value=23 Score=20.28 Aligned_cols=26 Identities=4% Similarity=0.020 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
-.+.+.+.|++..|||+++..+.|.+
T Consensus 39 TV~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 39 TVAQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp BHHHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred HHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 45667788888999999999999974
No 101
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=53.88 E-value=12 Score=24.64 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCC-------------CceeE--EEEEeecCCChhhhHHHHHHHH
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTE-------------APAAY--GELISIGSLGPSVNGKLSSTIA 82 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~-------------~p~~~--v~i~~~~~~~~~~~~~~~~~i~ 82 (115)
+-++..++.++-..++.+. |=-++.+...-+-|-++ .-... +.++.++..+ .-.-+..+|.
T Consensus 66 DVl~HAi~DAlLGA~~lGD--IG~~FPdtdp~~kga~S~~lL~~a~~l~~~~Gy~I~NvD~tiiaq~P--Ki~p~~~~m~ 141 (187)
T 3b6n_A 66 DVIFHALVDALLGGMSCSD--LGTLFPDGSPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVP--KISPIREEIV 141 (187)
T ss_dssp CHHHHHHHHHHHHHTTCC-----------------CCTHHHHHHHHHHHHHTTEEEEEEEEEEECSSS--CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCC--CcccCCCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCC--cchHHHHHHH
Confidence 5678888888888887542 33334444444444221 12333 3444454332 2345678899
Q ss_pred HHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 83 EILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 83 ~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
+.|.+.|++++++|.|.-+-. +..|+-|
T Consensus 142 ~nia~~L~i~~~~VnVKAtT~--E~LGf~G 169 (187)
T 3b6n_A 142 RNISSALGISESQVSLKGKTH--EQLGPVG 169 (187)
T ss_dssp HHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHhCCCcceEEEEEecC--CCCCcCc
Confidence 999999999999999988766 4555443
No 102
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=53.62 E-value=11 Score=29.91 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC--CCCceecCc
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE--RSFFGFNGS 113 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~--~~~~g~~G~ 113 (115)
..-.++....+.||||.++|.|...|-+ |..+|..|+
T Consensus 485 ~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~aS 523 (769)
T 1rm6_A 485 SNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSS 523 (769)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCccc
Confidence 3455677788899999999999999875 444554443
No 103
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=53.61 E-value=15 Score=19.37 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 26 V~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 26 VLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 355666777788999999999874
No 104
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=53.52 E-value=13 Score=20.67 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+.+.+++..|+|+++..+.|.
T Consensus 31 TV~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 31 TIENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp BHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred hHHHHHHHHHHHHCcChhhEEEEEC
Confidence 3456677778889999999999874
No 105
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=53.14 E-value=18 Score=20.47 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.|++..|+|+++..+.|.
T Consensus 37 V~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 37 VSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp HHHHHHHHHHHSSSCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 456677788889999999999874
No 106
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=51.82 E-value=16 Score=20.40 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...|.+.+++..|+|+++..+.|.
T Consensus 24 V~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 24 IENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHhhhCCChhHEEEEEC
Confidence 556677778888999999999884
No 107
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=51.49 E-value=17 Score=19.45 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 27 V~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 27 VAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHhhcCCCHHHEEEEEC
Confidence 556667777888999999998875
No 108
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.28 E-value=19 Score=21.82 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.|-+.+++.+++|+++..+.|.
T Consensus 39 V~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 39 LKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp SHHHHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHHHHhhhCCChHHEEEEEC
Confidence 345666677788999999998874
No 109
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=50.89 E-value=2.9 Score=29.83 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCC--------hhhhHHHHHHHHHHHHhH
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLG--------PSVNGKLSSTIAEILQTK 88 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~--------~~~~~~~~~~i~~~l~~~ 88 (115)
-+...+.+++.+|+.||.|.+.|.|..-+....-.++ -+.+.++ ....+++-+.|.+.-.+.
T Consensus 46 GQG~~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~----------~T~gSrst~~~g~Av~~Aa~~lr~~L~~~AA~~ 115 (330)
T 3hrd_B 46 GQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGG----------ATSASRQTLITGNAVILACRQAKETLAKTAAEK 115 (330)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCC----------CSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCC----------CCcchHhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998776532211111 1112222 233444555555555667
Q ss_pred hCCCCCce
Q 033597 89 LLIDSSRF 96 (115)
Q Consensus 89 Lgv~~~ri 96 (115)
|+++++.+
T Consensus 116 ~~~~~~~l 123 (330)
T 3hrd_B 116 LDCAPEEL 123 (330)
T ss_dssp SCCSSSCC
T ss_pred hCCCHHHE
Confidence 88887665
No 110
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=50.73 E-value=18 Score=20.06 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 33 V~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 33 LLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 456677788889999999999874
No 111
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=50.69 E-value=25 Score=20.25 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
-.+.+.+.|++..|||+++..+.|..
T Consensus 38 TV~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 38 SVEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp CHHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred hHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 45667788889999999999999975
No 112
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=50.41 E-value=17 Score=20.47 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 23 IENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp HHHHHHHHHHHTCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 456677778889999999999883
No 113
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=49.54 E-value=11 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC--CCCceecCc
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE--RSFFGFNGS 113 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~--~~~~g~~G~ 113 (115)
..-.++....+.||||.++|.|...|-+ |..+|..|+
T Consensus 492 ~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aS 530 (777)
T 2w3s_B 492 LHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAAS 530 (777)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTT
T ss_pred hhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCccc
Confidence 4455677788899999999999999874 455555554
No 114
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=49.32 E-value=24 Score=20.32 Aligned_cols=24 Identities=4% Similarity=0.151 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...|.+.|++..|+++++..+.|.
T Consensus 39 V~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 39 IQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp HHHHHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 456677777888999999999874
No 115
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=49.30 E-value=28 Score=21.48 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=20.5
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
++++.+.+.-+++.++. +.+|+++++|..
T Consensus 120 R~~~~s~e~~e~F~~~~-~~~Gl~~enI~~ 148 (157)
T 3fiq_A 120 KREDLNKAQKQELRKLA-EEYNIPNENTQH 148 (157)
T ss_dssp SSSCCCHHHHHHHHHHH-HHTTCCGGGCEE
T ss_pred CCCCCCHHHHHHHHHHH-HHcCCCHHHEEe
Confidence 66666666666655544 579999999875
No 116
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=49.01 E-value=16 Score=22.44 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhCCCcc--eeEEEEeCCceEEe-ccCC----CceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhC
Q 033597 18 SDILRDATKAVAKILGKSES--YVMILINGGVPIAF-AGTE----APAAYGELISIGSLGPSVNGKLSSTIAEILQTKLL 90 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~--~i~v~~~~~~~~~~-gg~~----~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (115)
.+|.++-.......-.+-|. |+.|.+-....+.- .|-+ ++..+..++.. +..-...+.+.+.+.||
T Consensus 8 ~rl~eE~~~~e~rrKEr~EahlY~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~-------k~~~~~~~~~~va~~lg 80 (130)
T 2kvr_A 8 ERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVL-------KNSSLAEFVQSLSQTMG 80 (130)
T ss_dssp HHHHHHHTTHHHHTCCCCSSTTCCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECC-------TTSBHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeEEEEecHHHHHhccCccCcCCccCCcceEEEe-------ccCcHHHHHHHHHHHhC
Confidence 34444444444444455555 67777754333321 2222 33333333322 22334456788889999
Q ss_pred CCCCceEEEEEe
Q 033597 91 IDSSRFYIKLYD 102 (115)
Q Consensus 91 v~~~ri~i~f~~ 102 (115)
+|++++.+..-.
T Consensus 81 ~~~~~~RlW~~~ 92 (130)
T 2kvr_A 81 FPQDQIRLWPMQ 92 (130)
T ss_dssp CCGGGCEEEECC
T ss_pred CCcccEEEEEee
Confidence 999998887653
No 117
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.56 E-value=22 Score=20.76 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+.+.+++..|+|+++..+.|.
T Consensus 41 TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 41 TGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp BHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred HHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 4566778899999999999988764
No 118
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=48.44 E-value=23 Score=19.73 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhCCCCCceEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
-...+.+.|++..|||++|..+.
T Consensus 29 TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 29 TVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp BHHHHHHHHHHHTCCCTTTCEEE
T ss_pred CHHHHHHHHHHHHCcCHHHeEEE
Confidence 45677888889999999999998
No 119
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=47.99 E-value=27 Score=20.80 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
-.+.+.+.|++..|+|+++..+.|..
T Consensus 29 TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 29 SLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp BHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred cHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 34567778888999999999999965
No 120
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=47.79 E-value=18 Score=22.92 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
+..+|.+.|.+.|++++++|.|.-+.-
T Consensus 108 ~~~~m~~~ia~~L~~~~~~V~vKAtT~ 134 (152)
T 1iv3_A 108 HRKALVDSLSRLMRLPQDRIGLTFKTS 134 (152)
T ss_dssp GHHHHHHHHHHHHTCCGGGEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 567889999999999999999988765
No 121
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=47.73 E-value=18 Score=20.38 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 40 V~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 40 VAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEET
T ss_pred HHHHHHHHHHHhCcChhHEEEEEC
Confidence 456677778889999999999874
No 122
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=47.62 E-value=18 Score=20.05 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 27 V~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 27 VAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp HHHHHHHHHHHTCSCTTTEEEESS
T ss_pred HHHHHHHHHHHhCCChhHEEEEEC
Confidence 455666777889999999999874
No 123
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG, structural genomics, protein structure initiative; 2.65A {Enterococcus faecalis} SCOP: d.190.1.2
Probab=47.53 E-value=43 Score=19.96 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=30.5
Q ss_pred HHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChh-hhHHHHHHHHHHHHhHhCCCCCceEEEEEecC
Q 033597 27 AVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPS-VNGKLSSTIAEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 27 ~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~-~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
.+|+.|+-++..-.+.+. ++... ...|.++-+......+-+. ....+..-+.++|++.+|++..+..-.+.-..
T Consensus 21 ~ia~~L~l~~g~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~~ 95 (145)
T 3ddv_A 21 SEMEKLQLGPEDSILRME---RIRFA-DDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQTISAVQ 95 (145)
T ss_dssp HHHHHHTCCTTSCEEEEE---EEEEE-TTEEEEEEEEEEEGGGC----------------------CCCCEEEEEEEEE
T ss_pred HHHHhCCcCCCCEEEEEE---EEEee-CCCcEEEEEEEeeHHHcCCcchhHhhhhHHHHHHHhhCCceEEEEEEEEEEe
Confidence 467888876654333333 23333 3467777666654433222 12345557889999999998888776666543
No 124
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=47.45 E-value=22 Score=19.86 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEEecC
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
.+.+-+.|++..|+|+++..+.|.+-+
T Consensus 27 I~~lK~ki~~~~Gip~~~QrLi~~~~~ 53 (86)
T 4b6w_A 27 IESIKENVFTHFATPPEYMQLQLIDDR 53 (86)
T ss_dssp HHHHHHHHHTTSCCCGGGEEEEEECTT
T ss_pred HHHHHHHHHHHHCCCHHHEEEEEecCC
Confidence 456777888999999999999987543
No 125
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=47.37 E-value=21 Score=21.06 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=21.3
Q ss_pred hhhhHHH----HHHHHHHHHhHhCCCCCceEEE
Q 033597 71 PSVNGKL----SSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 71 ~~~~~~~----~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
.+.|.++ +.++.++|.+.+||+++|+.+.
T Consensus 60 ~~~N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~ 92 (123)
T 3td3_A 60 RKLNERLSLARANSVKSALVNEYNVDASRLSTQ 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHEEEE
Confidence 3445555 4667778888889999998765
No 126
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.27 E-value=30 Score=20.51 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.4
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKS 35 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (115)
.|.+.+..+...++.+...+.+.|.+...+..|-|
T Consensus 71 ~P~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~ 105 (128)
T 2ebm_A 71 APLYEIFSQENLEDNDVSDILKLLALQAEENLGMV 105 (128)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 38888888656666667888888888887777765
No 127
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=47.22 E-value=21 Score=19.54 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 40 V~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 40 VKEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 455666677788999999999884
No 128
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=47.06 E-value=19 Score=21.10 Aligned_cols=46 Identities=4% Similarity=-0.092 Sum_probs=30.0
Q ss_pred CceeEEEEEeecCCC--h-hhhHHHHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 56 APAAYGELISIGSLG--P-SVNGKLSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 56 ~p~~~v~i~~~~~~~--~-~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+..-+.|+...+-+ - -.-..-.+.+-+.|++..|+|+++..+.|.
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 455666666553321 1 112335667888888999999999999875
No 129
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=46.92 E-value=19 Score=19.94 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 23 VERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHHCcChhHEEEEEC
Confidence 456677778889999999998874
No 130
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=46.57 E-value=19 Score=19.96 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+.+.+++..|+|+++..+.|.
T Consensus 39 TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 39 TIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp BHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred CHHHHHHHHHhhhCCChhhEEEEEC
Confidence 3556677778889999999998884
No 131
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=46.52 E-value=32 Score=19.64 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=16.6
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVA 29 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (115)
|.++|+|....+.. +.|.+.+.++..
T Consensus 53 ~~lrIqT~~~~~p~--~al~~a~~~l~~ 78 (92)
T 2pa8_L 53 IIVKILTDGSITPK--DALLKAIENIRG 78 (92)
T ss_dssp EEEEEEECSSSCHH--HHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHH--HHHHHHHHHHHH
Confidence 67899998765542 556555555443
No 132
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=46.37 E-value=21 Score=20.41 Aligned_cols=24 Identities=4% Similarity=0.151 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 44 V~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 44 IQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 456677777889999999999874
No 133
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=46.09 E-value=15 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 35 V~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 35 VERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp HHHHHHHHHHHHCCCGGGCCEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 566777778889999999988874
No 134
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=46.01 E-value=42 Score=19.42 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=32.5
Q ss_pred CCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 68 SLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
..+|+.-.++-+.|.+.+++-..|+++.+-|.+..-
T Consensus 34 ~~~pd~l~~lk~eIl~VIsKYv~Id~~~v~V~l~~~ 69 (95)
T 2kxo_A 34 GQTPDYLPTLRKALMEVLSKYVNVSLDNIRISQEKQ 69 (95)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHSCCCTTSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHheecchhheEEEEEeC
Confidence 467888899999999999999999999999999875
No 135
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=45.79 E-value=22 Score=20.36 Aligned_cols=23 Identities=4% Similarity=0.177 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
.+.|.+.|++..|+|+++..+.|
T Consensus 47 V~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 47 VQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHCcChhhEEEEE
Confidence 45666777778899999999987
No 136
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=45.64 E-value=20 Score=20.31 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.|.+.+++..|+|+++..+.|.
T Consensus 44 TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 44 TIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp BHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred cHHHHHHHHHHHhCCChhHEEEEEC
Confidence 3566777788889999999998874
No 137
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=45.55 E-value=26 Score=18.67 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=17.1
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+...|.
T Consensus 25 ~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 25 SKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEET
T ss_pred HHHHHHHHHHhCCCcceEEEEEC
Confidence 34455566789999999988874
No 138
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=44.39 E-value=12 Score=29.75 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
-+...+.+++..|+.||.|.+.|.|...+....-.++.+-- --...+.|.--....+++-++|.+...+.|+++++.+
T Consensus 482 GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 559 (769)
T 1rm6_A 482 GQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYS--SRVTFMVGNASISAAEELKGVLVKAAAKKLDAREEDI 559 (769)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHe
Confidence 35788899999999999999999998865432222211100 0000111222356677777788888888899888887
Q ss_pred EE
Q 033597 97 YI 98 (115)
Q Consensus 97 ~i 98 (115)
.+
T Consensus 560 ~~ 561 (769)
T 1rm6_A 560 EV 561 (769)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 139
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=44.39 E-value=52 Score=21.00 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCc-eeEEE
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAP-AAYGE 62 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p-~~~v~ 62 (115)
.-...+..+.+|++++-|.+.|.|.-.....+-|-|+.+- +++..
T Consensus 109 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eGIaa~Av 154 (160)
T 2pmp_A 109 SPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTV 154 (160)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCcceEEEEEecCCCCCcccCCCcEEEEEE
Confidence 4567789999999999999999999999888888887753 34433
No 140
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=44.16 E-value=25 Score=19.31 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+.+.+++..|+|+++..+.|.
T Consensus 28 V~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 28 VKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 455666777788999999988874
No 141
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=44.10 E-value=52 Score=21.01 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCC
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEA 56 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~ 56 (115)
.-...+..+.+|++++-|.+.|.|.-.....+-|-|+.+
T Consensus 108 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~e 146 (159)
T 1t0a_A 108 APHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKE 146 (159)
T ss_dssp GGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCcccCCC
Confidence 456778999999999999999999999988888888775
No 142
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=44.09 E-value=12 Score=29.66 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEec--CCCCceecCc
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDV--ERSFFGFNGS 113 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~--~~~~~g~~G~ 113 (115)
..-.++....+.||||.++|.|...|- .|..+|..|+
T Consensus 472 ~~T~~aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~aS 510 (755)
T 3nvz_C 472 LHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAAS 510 (755)
T ss_dssp HHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTT
T ss_pred HHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCchh
Confidence 334556677789999999999998874 4555665554
No 143
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=43.83 E-value=24 Score=18.80 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=17.1
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.+.+.+++..|+|+++..+.|.
T Consensus 27 ~~lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 27 KKLKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHCCCcccEEEEEC
Confidence 34455666778999999998773
No 144
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=43.83 E-value=8.6 Score=30.65 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
-+...+.+++..|+.||.|.+.|.|...+-. .-.++.+-- --...+.|.--....+++-+++.+.-.+.|+++++.+
T Consensus 507 GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~-~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 583 (788)
T 1t3q_B 507 GQGHETTLAQIAADVLGVPASDVVIQAGSTK-NTYGFGAYA--SRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDI 583 (788)
T ss_dssp SSCHHHHHHHHHHHHHTSCGGGEEEECSBTT-SCCBCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEecCCCC-CCCCCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHE
Confidence 3578889999999999999999999776543 333311100 0000111222256677777788888888899998887
Q ss_pred EE
Q 033597 97 YI 98 (115)
Q Consensus 97 ~i 98 (115)
.+
T Consensus 584 ~~ 585 (788)
T 1t3q_B 584 VI 585 (788)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 145
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=43.71 E-value=22 Score=20.43 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 71 PSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
.-+++.+...+.+.+.+.++++++.+
T Consensus 12 ~~~~~~i~~~l~~ila~~l~v~~~~I 37 (100)
T 1vku_A 12 HMERKKLIAKFVEIASEKMGKDLETV 37 (100)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCCCSC
T ss_pred hccHHHHHHHHHHHHHHHHCCCHHHC
Confidence 34678888999999999999988754
No 146
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.66 E-value=18 Score=20.40 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
-.+.+.+.|++..|+|+++..+.|..
T Consensus 30 TV~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 30 TIAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp BHHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred HHHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 34667788888999999999998864
No 147
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=43.47 E-value=22 Score=17.22 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=12.8
Q ss_pred HHHHHHHHhHhCCCCC
Q 033597 79 STIAEILQTKLLIDSS 94 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ 94 (115)
..+.+.+++++||+..
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4667889999999864
No 148
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=43.16 E-value=11 Score=22.40 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCC
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSS 94 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ 94 (115)
.......+...++.++|-|..|- +..|. ....+. ++++++..++...+.+.+.+ ++++++
T Consensus 43 ~~~~~~~l~~fl~~~~gGp~~Y~------g~~m~--~~H~~~---------~I~~~~f~~wl~~~~~al~~-~~~~~~ 102 (121)
T 3aq9_A 43 MDHQTKQETDFLTMLLGGPNHYK------GKNMT--EAHKGM---------NLQNLHFDAIIENLAATLKE-LGVTDA 102 (121)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCC------SCCHH--HHTTTS---------CBCHHHHHHHHHHHHHHHHH-TTCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC------CccHH--HHhcCC---------CcCHHHHHHHHHHHHHHHHH-cCCCHH
Confidence 56788899999999999998771 11110 011121 58899999999999999987 777653
No 149
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.85 E-value=26 Score=20.24 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHh--CCCCCc-eEEEEE
Q 033597 76 KLSSTIAEILQTKL--LIDSSR-FYIKLY 101 (115)
Q Consensus 76 ~~~~~i~~~l~~~L--gv~~~r-i~i~f~ 101 (115)
.-...+.+.+++.. |+|+++ ..+.|.
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred CCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 34567777888889 999999 888763
No 150
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=42.48 E-value=30 Score=18.88 Aligned_cols=23 Identities=0% Similarity=0.046 Sum_probs=17.7
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 32 ~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 32 KVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp HHHHHHHHHHHTCTTCCCEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 44566677789999999888874
No 151
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=42.31 E-value=18 Score=28.92 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC--CCCceecC
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE--RSFFGFNG 112 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~--~~~~g~~G 112 (115)
..-.++....+.||||.++|.|...|-+ +..+|..|
T Consensus 526 ~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~~t~a 563 (803)
T 1ffv_B 526 HQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYG 563 (803)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCT
T ss_pred HHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCccc
Confidence 3455677788899999999999998874 33444444
No 152
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=42.17 E-value=31 Score=19.48 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=23.2
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCc
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSR 95 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~r 95 (115)
.++++++.+++++.+.|...+.-++.+
T Consensus 49 V~~~qR~~iAe~Fa~AL~~Svk~~~~~ 75 (83)
T 2jrx_A 49 IAPAQRQAIANSFARALQSSINEDKAH 75 (83)
T ss_dssp SCTTSHHHHHHHHHHHHHHHSCSSCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 678999999999999999988876543
No 153
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=42.09 E-value=72 Score=21.27 Aligned_cols=32 Identities=6% Similarity=-0.111 Sum_probs=27.7
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCceEEEE
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
.+-++=.+-+.++++.+.+.||++++.|.+.=
T Consensus 103 ~TG~~G~~da~~~a~~~A~~lgi~~~~VlvaS 134 (208)
T 1vra_A 103 CTGKRGLDDAYTMRAVGAETFHIPEHYVAVTS 134 (208)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCChhHEEEeC
Confidence 56677788899999999999999999998753
No 154
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=41.77 E-value=19 Score=28.85 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC--CCCceecC
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE--RSFFGFNG 112 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~--~~~~g~~G 112 (115)
..-.++....+.||||.++|.|...|-+ +..+|..|
T Consensus 532 ~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~a 569 (809)
T 1n62_B 532 HETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYG 569 (809)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCT
T ss_pred HHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCccc
Confidence 3445667788899999999999998874 33444444
No 155
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=41.56 E-value=59 Score=20.74 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCc-eeEEEE
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAP-AAYGEL 63 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p-~~~v~i 63 (115)
.-...++.+.+|++++-|.+.|.|.-.....+-|-|+.+- +++..+
T Consensus 107 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~eGIaa~Av~ 153 (160)
T 1gx1_A 107 LPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVA 153 (160)
T ss_dssp GGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCceEEEEEccCCCCCcccCCCcEEEEEEE
Confidence 4567789999999999999999999999888888887753 344433
No 156
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.36 E-value=30 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
-...+...|++.+|+|+.+..+.+.+
T Consensus 34 TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 34 TVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp BHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred CHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 45667888999999999999998874
No 157
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.13 E-value=42 Score=20.39 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=15.9
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVA 29 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a 29 (115)
|.++|+|....+.. +.|.+.+.+++.
T Consensus 70 ~~lrIqT~~~~~p~--eaL~~al~~L~~ 95 (123)
T 3h0g_K 70 FILRVQTVEDCSPK--QVIVDAAKSLIT 95 (123)
T ss_dssp EEEEEECCSSSCSH--HHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHH--HHHHHHHHHHHH
Confidence 57899998665543 555555544443
No 158
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=40.78 E-value=57 Score=19.47 Aligned_cols=81 Identities=7% Similarity=0.020 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCcceeEEEEeC-----C-----------ceEEeccCCCceeEEEEEeecCCC---hhhhHHHHHHH
Q 033597 21 LRDATKAVAKILGKSESYVMILING-----G-----------VPIAFAGTEAPAAYGELISIGSLG---PSVNGKLSSTI 81 (115)
Q Consensus 21 ~~~l~~~~a~~~~kp~~~i~v~~~~-----~-----------~~~~~gg~~~p~~~v~i~~~~~~~---~~~~~~~~~~i 81 (115)
..+|-+.+++..|.|.+.+.+.+.. + ..+++-.+......+.++...+.. .-....-...+
T Consensus 23 v~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~l 102 (152)
T 3b08_A 23 IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENV 102 (152)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEECTTCBHHHH
T ss_pred HHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEeCCCCcHHHH
Confidence 4456666777789998877665431 1 111111111122333444333211 00112234567
Q ss_pred HHHHHhHhCCCCCceEEEEE
Q 033597 82 AEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+++..|+|+++..+.|.
T Consensus 103 K~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 103 KAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp HHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHhCcChhhEEEEEC
Confidence 77788889999999999874
No 159
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.76 E-value=21 Score=20.47 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.|++..|+|+++..+.|.
T Consensus 34 V~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 34 LSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp HHHHHHHHHHHTCCCGGGBCEEET
T ss_pred HHHHHHHHHHHHCcChHHeEEEEC
Confidence 456777888889999999988774
No 160
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=40.75 E-value=44 Score=19.96 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=33.8
Q ss_pred CceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecC
Q 033597 56 APAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 56 ~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
.+-.++.+...|.++++.-+++..++-+.+++ .+.++=|+++.+.+.+
T Consensus 17 ~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~-~~~~~i~lL~~~~~f~ 64 (127)
T 2ook_A 17 ESVFFVTLKAIGTLTHEDYLVITPMLEGALSQ-VDQPKVSLFLDATELD 64 (127)
T ss_dssp TTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT-CCCSSCCEEEEEEEEE
T ss_pred CCCCEEEEEEeeeECHHHHHHHHHHHHHHHhh-ccCCCEEEEEEccCCC
Confidence 45578889999999998877766666665554 1245666888887763
No 161
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=40.69 E-value=64 Score=20.33 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=38.6
Q ss_pred CccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCC-CceeEEEEEeecC
Q 033597 13 DAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTE-APAAYGELISIGS 68 (115)
Q Consensus 13 ~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~-~p~~~v~i~~~~~ 68 (115)
+.+.-..|.+.+++.+-.-..| .+.+|+.++...++..|-.+ +...|+.+..-.+
T Consensus 119 pnetyskfreriaenilqntsk-gsvvmisieqathwiagfndgekimfldvqtgkg 174 (220)
T 3b21_A 119 PNETYSKFRERIAENILQNTSK-GSVVMISIEQATHWIAGFNDGEKIMFLDVQTGKG 174 (220)
T ss_dssp TTCBHHHHHHHHHHHHHHHSCT-TCEEEEEETTTTEEEEEEECSSCEEEEBTTTTBS
T ss_pred CchhHHHHHHHHHHHHHhccCC-CcEEEEEhhhhhhhhhccCCCceEEEEEeecCCc
Confidence 3344567888888888777776 46789999988888887444 5666666665433
No 162
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.42 E-value=20 Score=20.05 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.|.+.+++..|+|+++..+.|.
T Consensus 39 V~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 39 VRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp HHHHHHHHHHHTCSCTTTBCCEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 456677777889999999988773
No 163
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* 2yep_A*
Probab=40.25 E-value=60 Score=20.96 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=28.0
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCceEEEE
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
.+-++=.+-+.++++.+.+.||++++.+.+.=
T Consensus 72 ~TG~~G~~da~~~~~~~A~~lg~~~~~Vlv~S 103 (173)
T 2v4i_A 72 ATGLEGEENAREVREAVARALGLPEGEMLIAS 103 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCchhEEEec
Confidence 56677888999999999999999999998753
No 164
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=39.95 E-value=65 Score=21.03 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCc-eeEEEE
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAP-AAYGEL 63 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p-~~~v~i 63 (115)
.-...+..+.+|++++-|.+.|.|.-.....+-|=|+.+- +++..+
T Consensus 129 ~p~~~~mr~~la~~L~i~~~~VnVKATT~E~LGf~Gr~EGIaa~Av~ 175 (183)
T 3f0d_A 129 APHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAA 175 (183)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEE
T ss_pred hhHHHHHHHHHHHHHCCCcceEEEEEecCCCCccCcCcceEEEEEEE
Confidence 4567788999999999999999999999888888777753 344333
No 165
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=39.94 E-value=38 Score=20.34 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCC
Q 033597 1 MPTLNLYTNVPVDAVIASDILRDATKAVAKILGKS 35 (115)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (115)
.|.+.|......++.+...+.+.|.+...+..|-|
T Consensus 78 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 112 (138)
T 2yz0_A 78 APEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQE 112 (138)
T ss_dssp CCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 38888877665666667788888888877777765
No 166
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=39.76 E-value=39 Score=19.12 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=17.4
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 29 ~kl~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 29 SKLMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp HHHHHHHHHHTTCCSTTEEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 34456666789999999988884
No 167
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.75 E-value=24 Score=19.94 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=21.5
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
.++-.+.++.+.+.+.+.+.|+++++.+
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~~~~~~i 35 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDKIDPEKL 35 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTSCTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCHhhC
Confidence 3445566788889999999999887764
No 168
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=39.61 E-value=21 Score=19.68 Aligned_cols=25 Identities=8% Similarity=-0.126 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-...+.+.|++..|+++++..+.+-
T Consensus 22 Tv~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 22 RLRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp BHHHHHHHHHHHTCCCTTTCCCEES
T ss_pred CHHHHHHHHHHHhCCCccceEEEeC
Confidence 3567778888899999888888763
No 169
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=39.52 E-value=70 Score=20.45 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCc
Q 033597 18 SDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAP 57 (115)
Q Consensus 18 ~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p 57 (115)
.-...+..+.+|++++-|.+.|.|.-.....+-|=|+.+-
T Consensus 112 ~p~~~~m~~~la~~L~~~~~~V~vKAtT~E~LGf~Gr~EG 151 (162)
T 3re3_A 112 LPHIEKMRACLANILEIQISQINIKATTTERLGFIGREEG 151 (162)
T ss_dssp GGGHHHHHHHHHHHHTSCGGGEEEEEECCSSCHHHHTTSE
T ss_pred hhHHHHHHHHHHHHHCCCCceEEEEEecCCCcCCCcccce
Confidence 4567788999999999999999999998888887777753
No 170
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=39.30 E-value=16 Score=29.06 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCC-ceecC
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSF-FGFNG 112 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~-~g~~G 112 (115)
|++...---++| +.||+|++||.- .+| |..+|
T Consensus 163 K~eai~~~~e~l-~~~g~~~~~i~~------~dnfW~~gG 195 (739)
T 2ztg_A 163 KNETVAYCTELL-NELGVKKEDIVY------KEEPWAGGG 195 (739)
T ss_dssp HHHHHHHHHHHH-HHHTCCGGGCEE------EEEEEEETT
T ss_pred HHHHHHHHHHHH-HHhCCCHHHeee------ccCcccCCC
Confidence 455555566777 789999999853 245 76554
No 171
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=39.23 E-value=32 Score=20.21 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+.+.+++..|+|+++..+.|.
T Consensus 32 V~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 32 IDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 456677788889999999999874
No 172
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=39.14 E-value=32 Score=20.02 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.|.+.+++..|+|+++..+.|.
T Consensus 57 TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 57 TIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp BHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred CHHHHHHHHHHHhCCChHHEEEEEC
Confidence 3556677778888999999999874
No 173
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=38.98 E-value=1.2e+02 Score=22.65 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcc----eeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCC
Q 033597 17 ASDILRDATKAVAKILGKSES----YVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLID 92 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~----~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~ 92 (115)
++++++++.+.++..+|.|+. ...-...+... -|. .+..+|.+ |+ ++.+|+.
T Consensus 213 ~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~----------~~~----~~~~TP~~---F~-------~~~v~~~ 268 (457)
T 2e01_A 213 REQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDK----------KIH----TIKSTPLE---FA-------SKYAKLD 268 (457)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTS----------CEE----EEEECHHH---HH-------HHTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCC----------Ccc----CCCcChHH---HH-------HHHcCCC
Confidence 567888999999999999987 55555544221 111 33355544 33 3346777
Q ss_pred CCceEEEEEecCCCCc
Q 033597 93 SSRFYIKLYDVERSFF 108 (115)
Q Consensus 93 ~~ri~i~f~~~~~~~~ 108 (115)
.+. ||.+..-|.+-+
T Consensus 269 ~~d-yV~l~n~p~~py 283 (457)
T 2e01_A 269 PST-PVSLINDPRHPY 283 (457)
T ss_dssp TTS-EEEEECCTTSCT
T ss_pred chh-eEEEeecCCCcc
Confidence 776 777666554433
No 174
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=38.57 E-value=14 Score=29.63 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
-+...+.+++..|+.||.|.+.|.|...+-...-.++.+-- --...+.|.--....+++-++|.+.-.+.|+++++.+
T Consensus 529 GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 606 (809)
T 1n62_B 529 GQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYG--SRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDL 606 (809)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCT--TCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 35788899999999999999999997765332222211100 0000001112245677777778888888889888876
Q ss_pred EE
Q 033597 97 YI 98 (115)
Q Consensus 97 ~i 98 (115)
.+
T Consensus 607 ~~ 608 (809)
T 1n62_B 607 EW 608 (809)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 175
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.44 E-value=28 Score=19.95 Aligned_cols=25 Identities=8% Similarity=-0.092 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+.+.+++..|+|+++..+.|.
T Consensus 49 TV~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 49 TVLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp BHHHHHHHHHHHHSCCSTTCCEEET
T ss_pred CHHHHHHHHHHHHCcChHHEEEEEC
Confidence 4566777788888999999988874
No 176
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=38.41 E-value=91 Score=21.11 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=32.1
Q ss_pred eEEEEEe--ecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecC
Q 033597 59 AYGELIS--IGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 59 ~~v~i~~--~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
.+++++. -+..+.++-.+..+++.+.+.++++. .++.|.+++.+
T Consensus 236 ~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~v~ih~ep~~ 281 (283)
T 3h90_A 236 RFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SDVIIHQDPCS 281 (283)
T ss_dssp EEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CEEEEEEECSC
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--CeEEEEeccCC
Confidence 4555554 34466677788889999999888875 67888888764
No 177
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=38.19 E-value=40 Score=20.17 Aligned_cols=24 Identities=4% Similarity=0.173 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...|.+.|++..|+|+++..+.|.
T Consensus 54 V~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 54 VQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp HHHHHHHHHHHHCSCSSSEEEEET
T ss_pred HHHHHHHHHHHHCcCcceEEEEEC
Confidence 566777788889999999999874
No 178
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=38.16 E-value=13 Score=29.70 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
-+...+.+++..|+.||.|.+.|.|...+-...-.++.+-- --...+.|.--....+++-++|.+.-.+.|+++++.+
T Consensus 523 GqG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 600 (803)
T 1ffv_B 523 GQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYG--SRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDL 600 (803)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGE
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 45788899999999999999999997765332222211100 0000011222245677777778888888888888776
Q ss_pred EE
Q 033597 97 YI 98 (115)
Q Consensus 97 ~i 98 (115)
.+
T Consensus 601 ~~ 602 (803)
T 1ffv_B 601 DW 602 (803)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 179
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.76 E-value=41 Score=18.66 Aligned_cols=25 Identities=4% Similarity=-0.142 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHh--CCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKL--LIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~L--gv~~~ri~i~f~ 101 (115)
-...+-+.|++.. |+|+++..+.|.
T Consensus 31 TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 31 SVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp CHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred cHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 4566777788888 999999998873
No 180
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=37.75 E-value=96 Score=22.09 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCC-cceeEEEEeCCceEEeccCCCceeEEEEEe-ecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 23 DATKAVAKILGKS-ESYVMILINGGVPIAFAGTEAPAAYGELIS-IGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 23 ~l~~~~a~~~~kp-~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~-~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
+-++.+++.++.+ .+.+|..+.++-+...-.+.-| ++- ...++.+.-.+..+.+.+.+. .+|+..-||-|.
T Consensus 154 GhTEyLa~~~~~~~~~~~Mml~~~~LrV~~vTtHip-----Lk~V~~~It~~~I~~~i~~~~~~l~-~fgi~~PrIaV~ 226 (349)
T 4aty_A 154 GYPGFVAHEMGMPAEDVYLLLIGGGLRIVHATLHEG-----IASALARLDQRHVERAARAAVQALQ-LMGIAHPVVGLM 226 (349)
T ss_dssp CHHHHHHHHTTSCGGGSEEEEEETTEEEEESSCSSC-----HHHHHHHCCHHHHHHHHHHHHHHHH-HTC-CCCCEEEE
T ss_pred CchHHhhhhcccCCcchhhhhcCCCcceeecccccc-----hhcchhhhhhHHHHHHHHHHHHHHH-HhcCCCCceEEE
Confidence 3678888888854 4556666666555544444444 222 234778888888888888886 499998887664
No 181
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=37.66 E-value=33 Score=19.52 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=17.9
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 31 ~kl~~~y~~~~gi~~~~~rf~Fd 53 (94)
T 2io1_B 31 SKLMKAYCERQGLSMRQIRFRFD 53 (94)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 34566677889999999988874
No 182
>3hma_A N-acetylmuramoyl-L-alanine amidase XLYA; endolysin, cell WALL biogenesis/degradation, compet hydrolase, secreted, sporulation; 2.20A {Bacillus subtilis} PDB: 3rdr_A 3hmb_A
Probab=37.34 E-value=50 Score=20.60 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhHhCCCCCceE
Q 033597 76 KLSSTIAEILQTKLLIDSSRFY 97 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri~ 97 (115)
+-...|+..|.+..+||++||.
T Consensus 110 ~a~~~L~~~l~~~y~i~~~~V~ 131 (157)
T 3hma_A 110 ANAQWLIKTLMAEHNISLANVV 131 (157)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEE
Confidence 4456777778888999999854
No 183
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=37.29 E-value=86 Score=20.52 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCC-ceeEEEEE
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEA-PAAYGELI 64 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~-p~~~v~i~ 64 (115)
-.-...++.+.+|++++-+++.|.|.-.....+-|=|+.+ -+++..+.
T Consensus 133 i~p~~~~m~~nia~~L~i~~~~VnVKAtT~E~LGf~Gr~egIaa~Av~l 181 (187)
T 3b6n_A 133 ISPIREEIVRNISSALGISESQVSLKGKTHEQLGPVGQKKAIECFANAL 181 (187)
T ss_dssp SHHHHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTSEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcCcCCCcEEEEEEEE
Confidence 3678889999999999999999999999888888877764 34444443
No 184
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=36.89 E-value=34 Score=19.30 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=17.5
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.+.+.+++..|+|+++..+.|.
T Consensus 45 ~~lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 45 KKLKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHCCChhhEEEEEC
Confidence 34555677788999999998873
No 185
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=36.89 E-value=36 Score=18.04 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHhCCCCCce
Q 033597 75 GKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
....+.+.+.+.+.||++++.+
T Consensus 5 ~~i~~~l~~ii~~~l~~~~~~i 26 (81)
T 2lol_A 5 DKIEQKVIEMVAEKLNKDKAII 26 (81)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCChhhC
Confidence 4566778888888898877654
No 186
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=36.82 E-value=52 Score=18.55 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCChhhhHHHHHHHHHHHHhHhCCCCC
Q 033597 68 SLGPSVNGKLSSTIAEILQTKLLIDSS 94 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgv~~~ 94 (115)
..++++++.+++++.+.|...+.-+..
T Consensus 48 ~V~~~qR~~iAe~Fa~AL~~Svk~~~~ 74 (83)
T 2jpq_A 48 RVAASQRKLIAEKFAQALMSSLETPKT 74 (83)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 367899999999999999998876543
No 187
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=36.75 E-value=24 Score=18.97 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHhHhCCCCCce
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
+......+.+.+.+.|+++++.+
T Consensus 5 ~~~i~~~l~~ii~~~l~~~~~~i 27 (82)
T 2qnw_A 5 DRPLLERVKDVVADQLGVDRARI 27 (82)
T ss_dssp SHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHCCCHhhC
Confidence 34567778888888888876554
No 188
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.71 E-value=24 Score=20.08 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=19.8
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...|.+.|++..|||++|..+.|.
T Consensus 30 V~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 30 PMVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp HHHHHHHHHHHTCCCTTTSCCEET
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEC
Confidence 466778888899999999988863
No 189
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=36.70 E-value=72 Score=19.43 Aligned_cols=83 Identities=5% Similarity=-0.010 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCCcceeEEE-EeCCceE-----------------EeccC-CCceeEEEEEeecCCC---hhhhHH
Q 033597 19 DILRDATKAVAKILGKSESYVMIL-INGGVPI-----------------AFAGT-EAPAAYGELISIGSLG---PSVNGK 76 (115)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~-~~~~~~~-----------------~~gg~-~~p~~~v~i~~~~~~~---~~~~~~ 76 (115)
+=..++-+.+++..|.|.+...+. +..+..+ .+-.+ ..+...+.++...+.+ .-....
T Consensus 23 ~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~ 102 (159)
T 3rt3_B 23 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQ 102 (159)
T ss_dssp CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTS
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCC
Confidence 344566667777789999877766 4222222 11112 1122333343332211 011123
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+-+.+++..|+|+++..+.|.
T Consensus 103 tV~~lK~~i~~~~gip~~~q~L~~~ 127 (159)
T 3rt3_B 103 TVAHLKQQVSGLEGVQDDLFWLTFE 127 (159)
T ss_dssp BHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred CHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 4567778888889999999999884
No 190
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=36.70 E-value=10 Score=30.18 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
-+...+.+++..|+.||.|.+.|.|...+-...-.++.+- +--...+.|.--...++++-++|.++-.+.|+++++.+
T Consensus 489 GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~--aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~~~~~~~~l 566 (777)
T 2w3s_B 489 GQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATA--ASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDV 566 (777)
T ss_dssp SSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGC
T ss_pred CCChhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 4578889999999999999999998765432222221110 00000011222245566777777777777788887776
Q ss_pred EE
Q 033597 97 YI 98 (115)
Q Consensus 97 ~i 98 (115)
.+
T Consensus 567 ~~ 568 (777)
T 2w3s_B 567 IF 568 (777)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 191
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=36.63 E-value=51 Score=19.86 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=15.6
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAV 28 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~ 28 (115)
|.++|+|....+.. +.|.+.+.+++
T Consensus 71 ~~lrIqT~~~~~p~--eaL~~a~~~L~ 95 (120)
T 1twf_K 71 FKLRIQTTEGYDPK--DALKNACNSII 95 (120)
T ss_dssp EEEEEEECTTCCHH--HHHHHHHHHHH
T ss_pred cEEEEEECCCCCHH--HHHHHHHHHHH
Confidence 57899998765542 45555554443
No 192
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=36.01 E-value=37 Score=20.10 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKS 35 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (115)
|.+.+..+...++.+...+.+.|.+...+.+|-+
T Consensus 76 P~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (128)
T 2day_A 76 PQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTA 109 (128)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 7788887666676667888888888877777765
No 193
>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} SCOP: d.147.1.1
Probab=35.99 E-value=31 Score=24.48 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.4
Q ss_pred HHHHHHHhHhCCCCCceEEEEEec
Q 033597 80 TIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 80 ~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
++.+.+.+++||+|+++|+.+.+-
T Consensus 148 ~v~e~iA~~cgV~p~~v~~lvapT 171 (316)
T 1qlm_A 148 DVAEHVADECGVDPENLYLLVAPT 171 (316)
T ss_dssp HHHHHHHHHHTSCGGGEEEEEECS
T ss_pred HHHHHHHHHcCCCHHHEEEEEecC
Confidence 457788889999999999988765
No 194
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.68 E-value=41 Score=19.31 Aligned_cols=25 Identities=4% Similarity=-0.132 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-.+.+.+.+++..|+|+++..+.|.
T Consensus 45 TV~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 45 TVFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp HHHHHHHHHHHTTCCCSTTCEEEET
T ss_pred cHHHHHHHHHHHHCcCcccEEEEEC
Confidence 4566777888899999999998873
No 195
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=35.64 E-value=75 Score=19.32 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=23.0
Q ss_pred cCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhC
Q 033597 53 GTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLL 90 (115)
Q Consensus 53 g~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (115)
|++.--.||+|....+-+...+.+ +-++|++|.+.|+
T Consensus 74 ~~e~~~~fIQi~LP~~AThGDKgK-ANEfckfLAK~l~ 110 (126)
T 1t6a_A 74 RTAGEETFIDIALPPGATHGDKGK-ANEFSKWLAKTLG 110 (126)
T ss_dssp EEETTEEEEEEECCTTCCHHHHHH-HHHHHHHHHHHHC
T ss_pred cccCCcceEEEECCCCCCcCcchh-HHHHHHHHHHHhh
Confidence 455455888888887777665443 3345666666553
No 196
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=35.48 E-value=24 Score=14.94 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhCC
Q 033597 21 LRDATKAVAKILGK 34 (115)
Q Consensus 21 ~~~l~~~~a~~~~k 34 (115)
.++++.++++++.|
T Consensus 8 akevssalskvlsk 21 (26)
T 2ibf_B 8 AKEVSSALSKVLSK 21 (26)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 46777888887766
No 197
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=35.47 E-value=56 Score=22.43 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=28.3
Q ss_pred eeEEEEEe--ecC-CChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 58 AAYGELIS--IGS-LGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 58 ~~~v~i~~--~~~-~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
+.+|-... -|. .+.+.+.++.+.+.+.+. +.||+++||++
T Consensus 126 ~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~-~~Gi~~~~Iil 168 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKDANDRSQLAMELVANAD-AHGIPMTELYI 168 (271)
T ss_dssp CEEEEESCBTTBCCCSHHHHHHHHHHHHHHHH-HTTCCGGGEEE
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCcccEEE
Confidence 44554443 222 456777888888888877 79999999986
No 198
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=35.47 E-value=83 Score=19.82 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=35.5
Q ss_pred ccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhC
Q 033597 14 AVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLL 90 (115)
Q Consensus 14 ~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lg 90 (115)
+....+|...+++++++.+++| +-|.+.-. + +..+ ....++--+..+++.+.+.++||
T Consensus 93 ~~~~~D~a~rlAkiLarR~~~P---~YVg~S~~----~--s~~g----------~m~veeeme~lkk~Vd~v~~~~~ 150 (151)
T 2z5b_A 93 DDRIRDMARHMATIISERFNRP---CYVTWSSL----P--SEDP----------SMLVANHLYILKKCLDLLKTELG 150 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSC---EEEEEEEC----T--TCCT----------HHHHHTHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHhCCC---eEEEeecc----c--cccc----------cchHHHHHHHHHHHHHHHHHHhc
Confidence 3446899999999999999998 44433211 0 0111 01123334444777888888876
No 199
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=34.84 E-value=16 Score=16.34 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=7.7
Q ss_pred CCceecCccC
Q 033597 106 SFFGFNGSTF 115 (115)
Q Consensus 106 ~~~g~~G~t~ 115 (115)
..|-+||.||
T Consensus 2 gkwtyngity 11 (33)
T 2i9n_A 2 GKWTYNGITY 11 (33)
T ss_dssp CCCBSSSCBC
T ss_pred CceeECCEEe
Confidence 4688888886
No 200
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=34.79 E-value=32 Score=19.85 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+.+.+++..|+|+++..+.|.
T Consensus 24 V~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 24 ILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp HHHHHHHHHHTTTSCGGGCEEEET
T ss_pred HHHHHHHHHHHHCCChhhEEEEEC
Confidence 556777788889999999998874
No 201
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=34.71 E-value=39 Score=19.09 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=17.9
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 41 ~kl~~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 41 SKLMKAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCccceEEEEC
Confidence 44566677889999999988874
No 202
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=34.70 E-value=41 Score=17.78 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhHhCCCCCce
Q 033597 75 GKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
......+.+.+.+.|+++++.+
T Consensus 6 ~~i~~~l~~~i~~~l~~~~~~i 27 (82)
T 2cnr_A 6 EEIVAGLAEIVNEIAGIPVEDV 27 (82)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHC
Confidence 4566788889999999887654
No 203
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=34.68 E-value=28 Score=27.79 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
|++-+.---++|.+.||+|++|++- .| .-|..||
T Consensus 163 K~eaI~~awe~lT~~~gl~~~ri~~--~d---NfW~~GG 196 (752)
T 2zze_A 163 MDETVELAFEFFTKELXMXPEDITF--KE---NPWAGGG 196 (752)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGEEE--EE---CCEEETT
T ss_pred HHHHHHHHHHHHhhhhhcchhheee--cc---CcccCCC
Confidence 5556666688899999999999953 33 3676654
No 204
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=34.54 E-value=55 Score=19.21 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHHHHHhHhCCCCCceEEEEEecCCCCceec
Q 033597 79 STIAEILQTKLLIDSSRFYIKLYDVERSFFGFN 111 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~ 111 (115)
..+.+-|.+.++++++.|+|.=... +||-+
T Consensus 33 ~eirekLAk~~~~~~d~Vvv~~~~T---~fG~g 62 (102)
T 1ywx_A 33 KDVKMKLVAVLNANKQVLVVDTLDQ---IFGKL 62 (102)
T ss_dssp HHHHHHHHHHHTSCSTTEEEEEEEE---CSSSS
T ss_pred HHHHHHHHHHHCCCCCEEEEEccEe---cCCCc
Confidence 4567778888999999988865554 45533
No 205
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=34.09 E-value=59 Score=19.01 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=19.5
Q ss_pred HHHHHHHHhHhCCCCCceEEEEEec
Q 033597 79 STIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
..+.+-|.+.++++++.|+|.=...
T Consensus 33 ~eirekLAk~~~~~~~~Vvv~~~~t 57 (101)
T 1xn9_A 33 NDVRNKLAAMLNAPLELLVIQRIKT 57 (101)
T ss_dssp HHHHHHHHHHTTCCTTTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEeeEe
Confidence 4567778888999999988876554
No 206
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=33.98 E-value=81 Score=22.53 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=24.4
Q ss_pred ecCCChhhhHHHHHHHHHHHHhHhCCC
Q 033597 66 IGSLGPSVNGKLSSTIAEILQTKLLID 92 (115)
Q Consensus 66 ~~~~~~~~~~~~~~~i~~~l~~~Lgv~ 92 (115)
+++.+.+++-++++.+.+.+.++|+||
T Consensus 95 l~~~tmeec~~lA~~~g~~i~~~l~VP 121 (325)
T 1qd1_A 95 VRGVTMDECVRCAQAFGQRLAEELGVP 121 (325)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCc
Confidence 346889999999999999999999998
No 207
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.97 E-value=14 Score=20.99 Aligned_cols=25 Identities=4% Similarity=-0.028 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
-...|.+.|++..|||++|..+.|.
T Consensus 38 TV~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 38 TGSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp BHHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred cHHHHHHHHHHHHCcCHHHeEEEEC
Confidence 3567788888899999999888753
No 208
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=33.95 E-value=49 Score=19.27 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=17.4
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
..+.+.|++..|+|+++..+.|.
T Consensus 59 ~~LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 59 SVIKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp HHHHHHHHHHSSCCTTTEEEEET
T ss_pred HHHHHHHHHHHCCChHHEEEEEC
Confidence 34555566778999999999873
No 209
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=33.95 E-value=80 Score=20.68 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=26.8
Q ss_pred CceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCC
Q 033597 56 APAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLI 91 (115)
Q Consensus 56 ~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv 91 (115)
+...|+++..-..+++++-+++-+.+.+.+.+.+.|
T Consensus 99 ~~g~y~d~~~~~~~t~edl~~IE~~m~~iI~~~~pi 134 (224)
T 1tke_A 99 DNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDV 134 (224)
T ss_dssp TTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 445788887555688888888888888888776644
No 210
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=33.44 E-value=36 Score=27.65 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=24.7
Q ss_pred HHHHHHHHhHh---CCCCCceEEEEEecC--CCCceecCc
Q 033597 79 STIAEILQTKL---LIDSSRFYIKLYDVE--RSFFGFNGS 113 (115)
Q Consensus 79 ~~i~~~l~~~L---gv~~~ri~i~f~~~~--~~~~g~~G~ 113 (115)
-.++....+.| |||.++|.|...|-+ |..+|..|+
T Consensus 661 T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gS 700 (907)
T 1dgj_A 661 AGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGS 700 (907)
T ss_dssp HHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTT
T ss_pred HHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccc
Confidence 34555666677 999999999998875 444554443
No 211
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=33.12 E-value=94 Score=21.03 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHhCCCcceeEEEEeCC
Q 033597 16 IASDILRDATKAVAKILGKSESYVMILINGG 46 (115)
Q Consensus 16 ~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~ 46 (115)
+..++.+++.+.+.+.++. ..++|+++|.
T Consensus 252 ~~~~i~~~i~~~l~~~~~~--~~v~ih~ep~ 280 (283)
T 3h90_A 252 QAHMVADQVEQAILRRFPG--SDVIIHQDPC 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHSTT--CEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCC--CeEEEEeccC
Confidence 3567888888888877753 6799999874
No 212
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=33.07 E-value=35 Score=17.94 Aligned_cols=22 Identities=9% Similarity=0.360 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhHhCCCCCce
Q 033597 75 GKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
......+.+.+.+.||++++.+
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i 25 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKV 25 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCHHHC
Confidence 4566778888889999876654
No 213
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=33.06 E-value=21 Score=20.64 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=22.9
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCce
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
+|.++-++..+.+.+...+++||+.+.+
T Consensus 1 mT~eq~~~~~~~~~~~C~~e~gv~~e~i 28 (120)
T 3v2l_A 1 MTVEQMMKSGEMIRSVCLGKTKVAEELV 28 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhhCcCHHHH
Confidence 3567888889999999999999987654
No 214
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=33.06 E-value=30 Score=25.35 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCc
Q 033597 71 PSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGS 113 (115)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~ 113 (115)
+.|... .....+.+.||+|+++|.|.-.++ -=||||+
T Consensus 206 stQ~p~---~~r~~vA~~Lglp~~~VrV~~~~v---GGgFG~K 242 (425)
T 3hrd_A 206 STQNPH---YDRGEVAGMLALPNSKVRIIQATT---GGGFGGK 242 (425)
T ss_dssp CCSCHH---HHHHHHHHHTTCCGGGEEEEECBC---CCCTTTT
T ss_pred CCCCHH---HHHHHHHHHhCCChhhEEEEeCCC---CCCCCCC
Confidence 445443 445677889999999999987776 3345554
No 215
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=33.01 E-value=75 Score=18.55 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=19.7
Q ss_pred hhhhHHHHH----HHHHHHHhHhCCCCCceEEE
Q 033597 71 PSVNGKLSS----TIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 71 ~~~~~~~~~----~i~~~l~~~Lgv~~~ri~i~ 99 (115)
.+.|.+++. ++.++|.+ .||+++|+.+.
T Consensus 52 ~~~N~~LS~~RA~aV~~~L~~-~Gi~~~ri~~~ 83 (118)
T 2hqs_H 52 PEYNISLGERRANAVKMYLQG-KGVSADQISIV 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHEEEE
Confidence 455666654 66677766 49999998764
No 216
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.80 E-value=31 Score=20.02 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEE
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
-.+.+.+.|++..|||++|-.+.+
T Consensus 30 TV~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 30 TVGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp BHHHHHHHHHHHHCCCTTTCCEEC
T ss_pred cHHHHHHHHHHHHCCChhHeEEEc
Confidence 346778889999999999988865
No 217
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=32.71 E-value=1.2e+02 Score=22.01 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=33.7
Q ss_pred eEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 59 AYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 59 ~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
..+-|...|+.+..+-.-+...+.+.| +..|+...|.|+-
T Consensus 288 v~vLVNgLG~T~~~El~iv~~~v~~~L-~~~gi~v~r~~vG 327 (366)
T 1oi2_A 288 VIALVNNLGATPLSELYGVYNRLTTRC-QQAGLTIERNLIG 327 (366)
T ss_dssp EEEEEEECBSCCHHHHHHHHHHHHHHH-HHHTCEEEEEEEE
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHH-HHCCCeEEEEeee
Confidence 556677889999888888999999999 5799999998863
No 218
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=32.69 E-value=28 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
..-.++....+.||||.++|.|...|-+
T Consensus 510 ~~T~~aQiaAe~LGip~~~V~v~~~DT~ 537 (788)
T 1t3q_B 510 HETTLAQIAADVLGVPASDVVIQAGSTK 537 (788)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEEECSBTT
T ss_pred HHHHHHHHHHHHHCCCHHHEEEecCCCC
Confidence 3445677788899999999999998774
No 219
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=32.66 E-value=1.1e+02 Score=23.94 Aligned_cols=42 Identities=10% Similarity=-0.047 Sum_probs=32.9
Q ss_pred CCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhC--CCCCceEEEEE
Q 033597 55 EAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLL--IDSSRFYIKLY 101 (115)
Q Consensus 55 ~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lg--v~~~ri~i~f~ 101 (115)
..+.+||.+-..+ ++ ..+..++.+.|++.+| +++++|.|.-+
T Consensus 53 ~~rvv~Vs~D~~~-~~----~~v~~~V~~~L~~~~g~~~~~~nV~isaT 96 (646)
T 2zws_A 53 GRRLVYVNTDLGM-IF----QAVHLKVLARLKAKYPGVYDENNVMLAAT 96 (646)
T ss_dssp CCEEEEEEESSSC-CC----HHHHHHHHHHHHHHSTTTCCTTTEEEEEC
T ss_pred CCEEEEEEECccc-CC----HHHHHHHHHHHHHHhCCCCChhHEEEEee
Confidence 5889999888754 43 4566777777888899 99999999875
No 220
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.59 E-value=39 Score=19.54 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+.+.|++..|+|+++..+.|.
T Consensus 54 V~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 54 VGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp HHHHHHHHHHHTTCCTTTSEEECS
T ss_pred HHHHHHHHHHHHCCCHHHeEEEEC
Confidence 345566677788999999999884
No 221
>4gvq_A Methenyltetrahydromethanopterin cyclohydrolase; HET: N4M; 1.30A {Archaeoglobus fulgidus} PDB: 4gvr_A 4gvs_A*
Probab=32.56 E-value=38 Score=24.08 Aligned_cols=24 Identities=13% Similarity=0.253 Sum_probs=20.2
Q ss_pred HHHHHHHhHhCCCCCceEEEEEec
Q 033597 80 TIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 80 ~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
++.+.+.+.+||+|+++|+.+.+.
T Consensus 148 ~v~~~iA~~cgv~p~~l~llvapT 171 (316)
T 4gvq_A 148 KVMEFIAKECDVDPENVYALVAPT 171 (316)
T ss_dssp HHHHHHHHHHTSCGGGEEEEEECS
T ss_pred HHHHHHHHHcCCCHHHEEEEEecC
Confidence 357778889999999999998765
No 222
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=32.53 E-value=1.3e+02 Score=21.24 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecC-------CChhhhHHHHHHHHHHHHhHh
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGS-------LGPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~-------~~~~~~~~~~~~i~~~l~~~L 89 (115)
..+|.+.+.+.+.+.+|.+..-+- .. +....+-.+.-|++++|+--+.. .+++..++++++|.+-| +-+
T Consensus 111 s~~LA~~I~~~l~~~~g~~~RGvk--~~-~~~~vLr~t~~PaVLVE~GFisN~~D~~~L~~~~~q~~iA~aIa~GI-~y~ 186 (326)
T 1xov_A 111 GRKLAVEISAKMAKALGLPNRGAK--AT-KDLRFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGL-TGK 186 (326)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEE--EE-SCCHHHHHCSSCEEEEEEEETTCHHHHHHHTSTTHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcc--cc-CCceeecCCCCCEEEEEecCCCCHHHHHHhcCHHHHHHHHHHHHHHH-HHh
Confidence 467888888888888875533222 11 22223335678999999987643 24566789999999998 677
Q ss_pred CCCCC
Q 033597 90 LIDSS 94 (115)
Q Consensus 90 gv~~~ 94 (115)
+.+..
T Consensus 187 ~~~~~ 191 (326)
T 1xov_A 187 TVAAK 191 (326)
T ss_dssp CCSCC
T ss_pred ccCCC
Confidence 76543
No 223
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=31.49 E-value=40 Score=18.66 Aligned_cols=20 Identities=5% Similarity=0.222 Sum_probs=15.6
Q ss_pred ChhhhHHHHHHHHHHHHhHh
Q 033597 70 GPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 70 ~~~~~~~~~~~i~~~l~~~L 89 (115)
++..|++++.+|.++|.+.+
T Consensus 3 ~~~~~K~la~sIi~FL~~~~ 22 (74)
T 2lxb_A 3 DSASKEEIAALIVNYFSSIV 22 (74)
T ss_dssp CSCCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhc
Confidence 44557889999999988875
No 224
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=31.23 E-value=33 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=18.5
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
++++.+.++-+.+.++ .+.+|++.++|.+.
T Consensus 129 R~~e~~~e~le~F~~~-~~~~Gl~~e~Ii~~ 158 (192)
T 3bx6_A 129 DKPETTKEQLGEFYEA-LDCLRIPKSDVVYT 158 (192)
T ss_dssp SSSCCCTTTTHHHHHH-HHHHTCCGGGCEEC
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCHHHEEEc
Confidence 4445544444444443 45799999988753
No 225
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=31.14 E-value=32 Score=24.78 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=32.2
Q ss_pred EEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecC
Q 033597 61 GELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNG 112 (115)
Q Consensus 61 v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G 112 (115)
+.++.++....- .-+..+|.+.|.+.||++.++|.|.-+.- +..|+-|
T Consensus 303 ~d~~~~~~~pk~--~~~~~~~~~~~~~~~~~~~~~v~~ka~t~--e~lg~~g 350 (371)
T 1w55_A 303 IDICVMAQSPKL--KDFKQAMQSNIAHTLDLDEFRINVKATTT--EKLGFIG 350 (371)
T ss_dssp EEEEEECSSSCC--GGGHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred EeEEEEeCCCCc--hhHHHHHHHHHHHHhCCCcceEEEEEecC--CCCCcCC
Confidence 444445543221 23557888899999999999999988766 4555444
No 226
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=30.83 E-value=40 Score=18.02 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhHhCCCCCce
Q 033597 75 GKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
....+.+.+.+.+.|+++++.+
T Consensus 4 ~~i~~~l~~ii~~~l~~~~~~i 25 (81)
T 3gzm_A 4 KSTFDDIKKIISKQLSVEEDKI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHhCcCHHHC
Confidence 4566778888888899887654
No 227
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=30.82 E-value=36 Score=18.05 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhHhCCCCCce
Q 033597 75 GKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
.+..+.+.+.+.+.++++++.+
T Consensus 6 ~~i~~~l~~~l~~~l~~~~~~i 27 (81)
T 1f80_D 6 ADTLERVTKIIVDRLGVDEADV 27 (81)
T ss_dssp CHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCHHhC
Confidence 4566778888888888876643
No 228
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=30.10 E-value=42 Score=17.99 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHhHhCCCCCce
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
+......+.+.+.+.++++++.+
T Consensus 7 ~~~i~~~l~~~i~~~l~~~~~~i 29 (84)
T 2kwl_A 7 NDEIFSKVRSIISEQLDKKEDEI 29 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHhCCCcccC
Confidence 34577788888888888876554
No 229
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=30.10 E-value=60 Score=18.71 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhHhCCCCCceEE
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
.+-.+.|-+++++++|.+++++.|
T Consensus 28 prAik~Irkfa~k~m~t~~~dVri 51 (92)
T 1vq8_X 28 DKAMILIREHLAKHFSVDEDAVRL 51 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEEE
Confidence 345578889999999998766655
No 230
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=29.86 E-value=60 Score=18.93 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=17.8
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCC
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDS 93 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~ 93 (115)
+.++...+-.+...+..+++||||+
T Consensus 54 l~~~~~~~n~~~af~~Ae~~lgi~~ 78 (109)
T 1bkr_A 54 LKKSNAHYNLQNAFNLAEQHLGLTK 78 (109)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCCCC
T ss_pred cCcCCHHHHHHHHHHHHHHHcCCCc
Confidence 4445556667777788888999974
No 231
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=29.77 E-value=1.3e+02 Score=20.43 Aligned_cols=82 Identities=11% Similarity=0.157 Sum_probs=46.9
Q ss_pred eEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhHHHHHHHH
Q 033597 3 TLNLYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNGKLSSTIA 82 (115)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~~~~~~i~ 82 (115)
+..|+.|.+....-..++..+|.+++.++-..|.-++.|.--.+..++.|+.-. .....+.+...++...+.
T Consensus 34 Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~--------~~~~~~~~~~~~~~~~~~ 105 (277)
T 4di1_A 34 LATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMP--------ELRTLNAPEADTAARVRL 105 (277)
T ss_dssp EEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHH--------HHHTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcc--------cccccChHHHHHHHHHHH
Confidence 456777765323335789999999998887766656655444455555554211 122233444555666666
Q ss_pred HHHHhHhCCC
Q 033597 83 EILQTKLLID 92 (115)
Q Consensus 83 ~~l~~~Lgv~ 92 (115)
+.+......|
T Consensus 106 ~~~~~l~~~~ 115 (277)
T 4di1_A 106 EAIDAVAAIP 115 (277)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHhCC
Confidence 6655544444
No 232
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=29.67 E-value=12 Score=22.46 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=15.9
Q ss_pred HHHHHhHhCCCCCceEEEEEec
Q 033597 82 AEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
++.|. ++|||+++|.+-|++.
T Consensus 81 a~eLv-~~GVpk~dIVLgF~~P 101 (112)
T 2nlv_A 81 AEELV-MMGVPREDIVLGLQAP 101 (112)
T ss_dssp HHHHH-HTTCCGGGEEETTSCG
T ss_pred HHHHH-HcCCCHHHEEEccCCc
Confidence 33343 4899999999998865
No 233
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=29.46 E-value=15 Score=21.50 Aligned_cols=28 Identities=7% Similarity=-0.100 Sum_probs=23.1
Q ss_pred CCChhhhHHHHHHHHHHHHhHhCCCCCc
Q 033597 68 SLGPSVNGKLSSTIAEILQTKLLIDSSR 95 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgv~~~r 95 (115)
.+++++.++..+.+.+...+++|++.+.
T Consensus 2 ~~t~~~~~~~~~~~~~~C~~e~~v~~~~ 29 (126)
T 1ooh_A 2 HMTMEQFLTSLDMIRSGCAPKFKLKTED 29 (126)
T ss_dssp CCCHHHHHHHHHHHHHTTGGGSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCHHH
Confidence 4678888888889999999999988654
No 234
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=28.96 E-value=67 Score=21.29 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
..+.+++.+.+.+++|+++++|+..-.
T Consensus 200 ~~m~~av~~~l~~~~G~~~~~i~~e~f 226 (252)
T 2gpj_A 200 FNSMRALRRHFKQAHALPKSHFYTSSY 226 (252)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCHHHeEEEEE
Confidence 457778888887789999999987544
No 235
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=28.83 E-value=1.3e+02 Score=20.04 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=28.7
Q ss_pred eccCCCceeEEEEEeecC-------CChhhhHHHHHHHHHHHHhHhC
Q 033597 51 FAGTEAPAAYGELISIGS-------LGPSVNGKLSSTIAEILQTKLL 90 (115)
Q Consensus 51 ~gg~~~p~~~v~i~~~~~-------~~~~~~~~~~~~i~~~l~~~Lg 90 (115)
+-.+.-|+++||+--+.. .+++..++++++|.+-+.+-++
T Consensus 179 Lr~t~mPaVLVE~GFisN~~d~~~L~~~~~q~kiA~aIa~GI~~Yf~ 225 (234)
T 3ne8_A 179 LKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSIRQFAE 225 (234)
T ss_dssp GCCSSSCEEEEESCCTTSHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCEEEEEeccCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHh
Confidence 335678999999976643 2466677888888887776654
No 236
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=28.71 E-value=85 Score=17.83 Aligned_cols=76 Identities=7% Similarity=0.076 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecC-CChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 20 ILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGS-LGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 20 ~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~-~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
|...+-+++.+-+.+ ..+--|.++- ...-.-+.|.+..+ +=-..+-+-.+.|...|++.++.+...+.|
T Consensus 8 ~~~~IR~~i~k~l~~-aGis~IeIeR---------~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I 77 (92)
T 1wh9_A 8 FKAELNEFLTRELAE-DGYSGVEVRV---------TPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVEL 77 (92)
T ss_dssp HHHHHHHHHHHHTTT-TTEEEEEEEE---------CSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEE
T ss_pred HHHHHHHHHHHHHHH-CceeeEEEEE---------CCCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEE
Confidence 445566666666654 2333333332 11224455554221 101124455788999999999998888999
Q ss_pred EEEecCC
Q 033597 99 KLYDVER 105 (115)
Q Consensus 99 ~f~~~~~ 105 (115)
++.++..
T Consensus 78 ~I~eV~~ 84 (92)
T 1wh9_A 78 YAEKVAT 84 (92)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9999854
No 237
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=28.46 E-value=37 Score=21.17 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=17.1
Q ss_pred CCeEEE-EeCCCCCccCHHHHHHHHHHHHHHHhC
Q 033597 1 MPTLNL-YTNVPVDAVIASDILRDATKAVAKILG 33 (115)
Q Consensus 1 MP~i~i-~tn~~~~~~~~~~~~~~l~~~~a~~~~ 33 (115)
||-..+ .||...++...+++.+.|.+.+|..+-
T Consensus 1 ~~~~~~~~t~~~l~~~~~~~vi~~Ln~~La~~~~ 34 (161)
T 2yjk_A 1 MTDTNITTPALTADPEVAAAAAQFLTPVVHKMQA 34 (161)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 565555 788887776667788889988888654
No 238
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=28.37 E-value=52 Score=19.59 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=29.8
Q ss_pred CceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCC--CceEEEEEec
Q 033597 56 APAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDS--SRFYIKLYDV 103 (115)
Q Consensus 56 ~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~--~ri~i~f~~~ 103 (115)
.+-.++.+...|.++++.-+++..++-+.+++ ..+ =|+++.+.+.
T Consensus 17 ~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~---~~~~~i~ll~~~~~f 63 (126)
T 2q3l_A 17 QDDFYLAFKAVGKLTHEDYEQMTPLLESALAG---IKTPEIVALIDITEL 63 (126)
T ss_dssp TTEEEEEEEEEEEECHHHHHHHHHHHHHHTTT---CCSSCEEEEEEEEEE
T ss_pred CCCCEEEEEEEeeECHHHHHHHHHHHHHHHHh---CCCceEEEEEEecCC
Confidence 35578889999999988866655554444432 344 6777777665
No 239
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=28.36 E-value=57 Score=19.67 Aligned_cols=25 Identities=4% Similarity=0.127 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhHhCCCCCceEEE
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
-.+-+.++.++|.+. ||+++|+.+.
T Consensus 62 S~~RA~aV~~~L~~~-Gv~~~ri~~~ 86 (138)
T 3cyp_B 62 AANRAYRVMKVLIQY-GVNPNQLSFS 86 (138)
T ss_dssp HHHHHHHHHHHHHHT-TCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHc-CCCHHHEEEE
Confidence 334455677777765 9999998664
No 240
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=28.32 E-value=14 Score=22.37 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=15.9
Q ss_pred HHHHHhHhCCCCCceEEEEEec
Q 033597 82 AEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
++.|. ++|||+++|.+-|++.
T Consensus 83 a~eLv-~~GVpk~dIVLgF~~P 103 (114)
T 2nwv_A 83 ATELM-RLGVTNNDIVLAFHPP 103 (114)
T ss_dssp HHHHH-HTTCCGGGEEETTSCG
T ss_pred HHHHH-HcCCCHHHEEEccCCc
Confidence 33343 4899999999998865
No 241
>2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli}
Probab=28.07 E-value=1e+02 Score=18.46 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEe
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILIN 44 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~ 44 (115)
.+.-.+.|.+++++.+|+| +.+.++
T Consensus 68 ~~~~~~~L~~ALs~~~G~~---v~L~i~ 92 (128)
T 2aya_A 68 NRGAQQKLAEALSMLKGST---VELTIV 92 (128)
T ss_dssp CHHHHHHHHHHHHHHHSSC---CEEEEE
T ss_pred CHHHHHHHHHHHHHHHCCC---EEEEEE
Confidence 3577889999999999998 445444
No 242
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=28.04 E-value=96 Score=18.25 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhh-hHHHH-HHHHHHHHhHhCCCCCceEEEEEec
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSV-NGKLS-STIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~-~~~~~-~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
..+++.++.++..-.+.+. ++.+. ...|.++-.......+ +.. ...+. .-+.++|++. |++..+..-.+.-.
T Consensus 22 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~-~~l~~~~~~~~sly~~l~~~-g~~~~~~~~~i~a~ 95 (149)
T 2p19_A 22 SAIAEKLGVSAGDEVLLIR---RLRST-GDIPVAILENYLPPAF-NDVSLDELEKGGLYDALRSR-GVVLKIANQKIGAR 95 (149)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEEE-TTEEEEEEEEEECGGG-TTCCHHHHHHSCHHHHHHHT-TCCCCEEEEEEEEE
T ss_pred HHHHHHcCcCCCCEEEEEE---EEEeE-CCeeEEEEEEEecccc-CCcChhhccCCCHHHHHHhC-CceeEEEEEEEEEE
Confidence 3577788876654333332 23332 3578777666654445 443 33343 3588899998 99888776666554
No 243
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.99 E-value=70 Score=18.91 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceec
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFN 111 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~ 111 (115)
.+++.-.|.-+|.. ..+.+-|.+.++++++.|+|.=... +||-+
T Consensus 28 ~~~v~Hpg~~tpsk-----~eirekLA~~~~~~~d~Vvv~~~~T---~fG~g 71 (107)
T 2v94_A 28 YFEIYHPGEPTPSR-----KDVKGKLVAMLDLNPETTVIQYIRS---YFGSY 71 (107)
T ss_dssp EEEEECTTSCCCCH-----HHHHHHHHHHHTCCGGGEEEEEEEC---CTTCS
T ss_pred EEEEEeCCCCCCCH-----HHHHHHHHHHHCCCCCEEEEEeeEe---cCCCc
Confidence 34444344444444 3466777788999999888765544 45543
No 244
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=27.84 E-value=98 Score=18.28 Aligned_cols=74 Identities=9% Similarity=-0.043 Sum_probs=41.3
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhh-HHHHHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVN-GKLSSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~-~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
..+++.++.++..-.+.+. ++... ...|.++-.......+-+... ..+..-+.++|++.+|++..+..-.+.-.
T Consensus 23 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~ 97 (152)
T 2ogg_A 23 ELIQKQLRANLDDDIWEVI---RSRKI-DGEHVILDKDYFFRKHVPHLTKEICENSIYEYIEGELGLSISYAQKEIVAE 97 (152)
T ss_dssp HHHHHHHTCCTTCCEEEEE---EEEEE-TTEEEEEEEEEEETTTCCCCCHHHHTSCHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEE---EEEeE-CCcEEEEEeeeeEHHHCCCCCHHHhcCcHHHHHHhhcCccEEEEEEEEEEE
Confidence 3577788876553333332 22222 346766666554433322221 12234588899999998887766665544
No 245
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=27.73 E-value=1.2e+02 Score=19.12 Aligned_cols=42 Identities=7% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEe---cCCCCcee
Q 033597 68 SLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYD---VERSFFGF 110 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~---~~~~~~g~ 110 (115)
+++++...+.-+++.+++ +.+|++.+++...-.. .+.++|.+
T Consensus 141 sR~~~l~~e~~~~f~~~~-~~~G~~~~~ii~~~q~~~C~~~~~~~~ 185 (190)
T 3s26_A 141 GRTKELSPELKERFTRFA-KSLGLKDDNIIFSVPTDQCIDNSAWSH 185 (190)
T ss_dssp ESSSCCCHHHHHHHHHHH-HHTTCCGGGEEEEECCSSSTTCC----
T ss_pred cCCCCCCHHHHHHHHHHH-HHcCCCHHHEEECCCCCcccCcccccc
Confidence 356666666666666654 4699999998766542 24455543
No 246
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=27.70 E-value=13 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=15.7
Q ss_pred HHHHHhHhCCCCCceEEEEEec
Q 033597 82 AEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
++.|. ++|||+++|.+-|++.
T Consensus 81 a~eLv-~~GVpk~dIVLgF~~P 101 (112)
T 3d7q_A 81 ALELM-EMGIDKQDIVIGFHTP 101 (112)
T ss_dssp HHHHH-TTTCCGGGEEETTSCH
T ss_pred HHHHH-HcCCCHHHEEEccCCc
Confidence 33444 4899999999988764
No 247
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=27.67 E-value=66 Score=18.85 Aligned_cols=23 Identities=0% Similarity=-0.060 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHhCCCCCceEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
...+-+.+++..|+|+++..+.|
T Consensus 49 V~~LK~~I~~k~Gipp~~QRli~ 71 (105)
T 4dbg_A 49 VASLKDMVFLDYGFPPVLQQWVI 71 (105)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHEEEec
Confidence 45567778888999999888554
No 248
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=27.33 E-value=60 Score=16.95 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHhCCCCCce
Q 033597 76 KLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri 96 (115)
+..+.+.+.+.+.||++++.+
T Consensus 4 ~i~~~l~~~~~~~l~~~~~~i 24 (79)
T 2l3v_A 4 DTAERVKKIVVEHLGVDADKV 24 (79)
T ss_dssp HHHHHHHHHHHHHTCCCSTTC
T ss_pred HHHHHHHHHHHHHhCCCHhhC
Confidence 356678888899999887654
No 249
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=27.24 E-value=67 Score=19.13 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEec-cCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCC
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFA-GTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDS 93 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~g-g~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~ 93 (115)
++.++....+.++.-.+++.....-.|.+|.-+..= -.-.|-. .-...++++...+-.+...+..+++||||+
T Consensus 11 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~l----id~~~l~~~~~~~n~~~af~~Ae~~lgi~~ 84 (121)
T 2d88_A 11 SSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDL----IDFDSLDEQNVEKNNQLAFDIAEKELGISP 84 (121)
T ss_dssp SCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTT----SCTTTSCTTCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCc----CCHHHcCccCHHHHHHHHHHHHHHHcCCCC
Confidence 456777766666543344433333344443211100 0012211 112234456666677777888888999974
No 250
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=27.06 E-value=69 Score=17.75 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=18.0
Q ss_pred CCChhhhHHHHHHHHHHHHhHh
Q 033597 68 SLGPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~L 89 (115)
..++.+++.+++++.+.|...+
T Consensus 47 ~V~~~qR~~iAe~Fa~AL~~Sv 68 (76)
T 2jr2_A 47 QVPESKRVAVVDNFTKALKQSV 68 (76)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999888887654
No 251
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=27.03 E-value=71 Score=17.79 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=19.6
Q ss_pred HHHHHHHHH-HhHhCCCCCceEEEEE
Q 033597 77 LSSTIAEIL-QTKLLIDSSRFYIKLY 101 (115)
Q Consensus 77 ~~~~i~~~l-~~~Lgv~~~ri~i~f~ 101 (115)
-...+-+.+ ++..|+|+++..+.|.
T Consensus 25 TV~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 25 TILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp BHHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred cHHHHHHHHHHHhcCCChHHEEEEEC
Confidence 455666777 7777999999999884
No 252
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=33.05 E-value=13 Score=19.66 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 V~~lK~~i~~~~gi~~~~qrL~~~ 46 (76)
T 3b1l_X 23 ILQLKEVVAKQQGVPADQLRVIFA 46 (76)
Confidence 455666777788999998888764
No 253
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.60 E-value=88 Score=17.32 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=18.2
Q ss_pred HHHHHHHHHhH---hCCCCCceEEEEE
Q 033597 78 SSTIAEILQTK---LLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~---Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++. .|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 23 VKALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp HHHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred HHHHHHHHHhhcccCCCChhhEEEEEC
Confidence 45566677777 5899999999874
No 254
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=26.57 E-value=64 Score=18.88 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=17.5
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 54 ~kL~~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 54 RRLMEAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 34456667788999999988884
No 255
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=26.45 E-value=52 Score=19.32 Aligned_cols=21 Identities=0% Similarity=0.029 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHhCCCCCce
Q 033597 76 KLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri 96 (115)
.+...+.+.+.+.|+++++.|
T Consensus 14 ~I~~~V~~ilaE~lev~~e~V 34 (102)
T 2l9f_A 14 GALELVRHLVAERAELPVEVL 34 (102)
T ss_dssp CHHHHHHHHHHHHTTSCSSSC
T ss_pred HHHHHHHHHHHHHHCCCHHHc
Confidence 356678888999999998875
No 256
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=26.42 E-value=98 Score=20.79 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=22.3
Q ss_pred HHHHHHHhHhCCCCCceEEEEEecC-CCCceecCc
Q 033597 80 TIAEILQTKLLIDSSRFYIKLYDVE-RSFFGFNGS 113 (115)
Q Consensus 80 ~i~~~l~~~Lgv~~~ri~i~f~~~~-~~~~g~~G~ 113 (115)
++...+ ++||++.+++-+.+.+-+ ..-+|++.+
T Consensus 17 Ai~~Al-~~L~v~~d~l~~eVleeg~kGffGiG~k 50 (225)
T 3gku_A 17 AVTKAL-IELQTTSDKLTYEIVEKGSAGFLGIGSK 50 (225)
T ss_dssp HHHHHH-HHHTCCGGGEEEEEEECCBCCC--CCCB
T ss_pred HHHHHH-HHhCCCHHHEEEEEEecCCCccccccCc
Confidence 444444 469999999999988774 567787654
No 257
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=26.30 E-value=37 Score=27.55 Aligned_cols=35 Identities=9% Similarity=-0.044 Sum_probs=24.3
Q ss_pred HHHHHHHHhHh---CCCCCceEEEEEecC--CCCceecCc
Q 033597 79 STIAEILQTKL---LIDSSRFYIKLYDVE--RSFFGFNGS 113 (115)
Q Consensus 79 ~~i~~~l~~~L---gv~~~ri~i~f~~~~--~~~~g~~G~ 113 (115)
-.+.....+.| |||.++|.|...|-+ |..+|..|+
T Consensus 659 T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gS 698 (907)
T 1vlb_A 659 IGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGS 698 (907)
T ss_dssp HHHHHHHHHHHGGGTCCGGGEEECCCBTTTSCCCCCSCTT
T ss_pred HHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccc
Confidence 34455566667 999999999998875 444554443
No 258
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=26.19 E-value=1.1e+02 Score=18.46 Aligned_cols=30 Identities=7% Similarity=0.007 Sum_probs=22.1
Q ss_pred CCChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 68 SLGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
+++++...+.-+.+.+++. .+|++.+++..
T Consensus 115 sR~~~~~~e~~~~f~~~~~-~~G~~~~~i~~ 144 (160)
T 3sao_A 115 SRSREVSPTAMAIFRKLAR-ERNYTDEMVAV 144 (160)
T ss_dssp ESSSSCCHHHHHHHHHHHH-TTTCCGGGEEE
T ss_pred ecCCCCCHHHHHHHHHHHH-HcCCCHHHEEE
Confidence 3666777777777666655 59999999875
No 259
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=26.15 E-value=1.1e+02 Score=18.26 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=14.9
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHH
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAV 28 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~ 28 (115)
|.++|+|.... + .+.|.+.+.+++
T Consensus 63 ~~lrIqT~~~~-p--~eaL~~al~~L~ 86 (115)
T 1xpp_A 63 PQIYVRVKSGK-P--QSAIKRAVRKLS 86 (115)
T ss_dssp CEEEEEESSSC-H--HHHHHHHHHHHH
T ss_pred cEEEEEeCCCC-h--HHHHHHHHHHHH
Confidence 68999998655 2 345555554443
No 260
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=26.07 E-value=68 Score=18.60 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=18.8
Q ss_pred HHHHHHHHhHhCCCCCceEEEEEe
Q 033597 79 STIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
+.+++...+..|++++++...|..
T Consensus 44 ~KL~~aYc~r~gv~~~sirFlfDG 67 (95)
T 2l76_A 44 QSVVDHMATHLGVSPSRILLLFGE 67 (95)
T ss_dssp HHHHHHHHHHHTSCGGGEEEEETT
T ss_pred HHHHHHHHhhcCCChhhEEEEECC
Confidence 345566788899999999998864
No 261
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=25.99 E-value=1e+02 Score=20.93 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=21.9
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
.+.+.+.++.+.+.+.+. +.||+++||++
T Consensus 131 ~t~~~~~~~~~~~~~~a~-~~Gi~~~~Iil 159 (262)
T 1f6y_A 131 KDSDTRLAFAMELVAAAD-EFGLPMEDLYI 159 (262)
T ss_dssp SSHHHHHHHHHHHHHHHH-HHTCCGGGEEE
T ss_pred CCHHHHHHHHHHHHHHHH-HCCCCcccEEE
Confidence 355667777777777766 68999999876
No 262
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=25.93 E-value=1e+02 Score=17.88 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHhHh---CCC-CCceEEE
Q 033597 71 PSVNGKLSSTIAEILQTKL---LID-SSRFYIK 99 (115)
Q Consensus 71 ~~~~~~~~~~i~~~l~~~L---gv~-~~ri~i~ 99 (115)
.+.|.+++.+=++.+.+.| |++ ++|+.+.
T Consensus 63 ~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~ 95 (123)
T 3oon_A 63 EEEMHELSEKRARAIGNYLIKMKVKDKDQILFK 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEE
Confidence 3556666654444443333 999 9998764
No 263
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=25.62 E-value=79 Score=16.80 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=17.9
Q ss_pred HHHHHHHHHhH---hCCCCCceEEEEE
Q 033597 78 SSTIAEILQTK---LLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~---Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++. .|+|+++..+.|.
T Consensus 28 V~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 28 VKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp HHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred HHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 45566667776 6899999999874
No 264
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=25.51 E-value=67 Score=19.11 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=23.5
Q ss_pred CeEEEEeCCCCCccCHHHHHHHHHHHHHHHhCCC
Q 033597 2 PTLNLYTNVPVDAVIASDILRDATKAVAKILGKS 35 (115)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp 35 (115)
|.+.+......++.+...+.+.|.+...+..|-+
T Consensus 80 P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 113 (137)
T 1ukx_A 80 PEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEV 113 (137)
T ss_dssp CCCEEEEEESSSSSHHHHHHHHHHHHHHHHTTSC
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 6677754444455556788888888877777765
No 265
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Probab=25.47 E-value=1.2e+02 Score=18.49 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=44.0
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhh-HHH-HHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVN-GKL-SSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~-~~~-~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
..+++.++.++..-.+.+. ++... ...|.++-.......+-+... ..+ ..-+.++|++.+|++..+..-.+.-.
T Consensus 44 ~~ia~~L~l~~g~~v~~i~---Rlr~~-dg~P~~~e~~ylp~~~~~~l~~~~~~~~sly~~l~~~~g~~i~~~~~~i~a~ 119 (173)
T 2ikk_A 44 KPIAEKLQIQPESPVVELK---RILYN-DDQPLTFEVTHYPLDLFPGIDTFIADGVSMHDILKQQYKVVPTHNTKLLNVV 119 (173)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEES-SSSEEEEEEEEEETTTSTTGGGGCCTTCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEE---EEEee-CCccEEEEEEeeeHhHCCCcchhhccCCcHHHHHHHHhCCCeEEEEEEEEEE
Confidence 4577888876654333332 23332 457877776665544333221 122 24588899999999888877666554
No 266
>1ugi_A UGI, uracil-DNA glycosylase inhibitor; protein mimicry of DNA, protein inhibitor, hydrolase inhibitor; 1.55A {Bacillus phage PBS2} SCOP: d.17.5.1 PDB: 1eui_C 1lqm_B 1lqg_C 1uug_B 2j8x_B 2ugi_A 2uug_C 2zhx_B 1udi_I 1ugh_I
Probab=25.46 E-value=52 Score=17.74 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=15.0
Q ss_pred HHHHHHHhC-CCcceeEEEEe
Q 033597 25 TKAVAKILG-KSESYVMILIN 44 (115)
Q Consensus 25 ~~~~a~~~~-kp~~~i~v~~~ 44 (115)
.+.+.++.| ||++.+.|+-.
T Consensus 26 peeveevignkpesdilvhta 46 (84)
T 1ugi_A 26 PEEVEEVIGNKPESDILVHTA 46 (84)
T ss_dssp HHHHHHHHSSCCSSCEEEEEE
T ss_pred hHHHHHHhcCCCccceEEEec
Confidence 455677776 99999888764
No 267
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=25.21 E-value=98 Score=18.25 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=18.3
Q ss_pred hhhhHHHHH----HHHHHHHhHhCCCCCceEEE
Q 033597 71 PSVNGKLSS----TIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 71 ~~~~~~~~~----~i~~~l~~~Lgv~~~ri~i~ 99 (115)
.+.|.+++. ++.++|.+ .||+++|+.+.
T Consensus 70 ~~~N~~LS~~RA~aV~~~L~~-~Gi~~~ri~~~ 101 (129)
T 2kgw_A 70 EGINIPLSAQRAKIVADYLVA-RGVAGDHIATV 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTCCGGGEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHH-cCCCHHHEEEE
Confidence 345665555 55555655 49999998764
No 268
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=25.11 E-value=47 Score=28.20 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhHhCCCCCceEEEEEecC--CCCceecCc
Q 033597 77 LSSTIAEILQTKLLIDSSRFYIKLYDVE--RSFFGFNGS 113 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri~i~f~~~~--~~~~g~~G~ 113 (115)
+.-.++....+.||||.++|.|.-.|-+ |..+|.+|+
T Consensus 1047 ~~T~~aQiaAe~LGip~e~I~v~~~DT~~~P~~~gt~gS 1085 (1335)
T 3zyv_A 1047 INTKMIQVASRELKIPMSYIHLDEMSTVTVPNTVTTGAS 1085 (1335)
T ss_dssp HHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTT
T ss_pred hhHHHHHHHHHHhCCCHHHEEEecCCcCCCCCCCCCccc
Confidence 3445677788899999999999887753 344444443
No 269
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=24.93 E-value=62 Score=21.01 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHhCCCCCceEE
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
..+.+++.+.+. ++|+++++|+.
T Consensus 220 ~~m~~~v~~~l~-~~G~~~~~i~~ 242 (243)
T 2eix_A 220 PMMNKAMQGHLE-TLGYTPEQWFI 242 (243)
T ss_dssp HHHHHHHHHHHH-HHTCCGGGEEE
T ss_pred HHHHHHHHHHHH-HcCCCHHHEEe
Confidence 347778888875 79999999985
No 270
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator, UTRA, DNA-bindin transcription regulation; 1.90A {Mycobacterium smegmatis}
Probab=24.92 E-value=1.4e+02 Score=18.99 Aligned_cols=75 Identities=8% Similarity=0.051 Sum_probs=44.9
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhhhH--HHHHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSVNG--KLSSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~~~--~~~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
..+|+.|+.++..-.+.+. ++... ...|.++-+......+-++... .+..-+.++|++. |++..+..-.+.-.
T Consensus 67 ~~ia~~L~l~~g~~v~~i~---Rlr~~-dg~Pv~~e~~ylp~~~~p~l~~~~~~~~Sly~~L~~~-g~~i~~~~~~i~a~ 141 (201)
T 3f8l_A 67 EVLAGVLGVDVGAPVLQLE---RVLTT-DGVRVGLETTKLPAQRYPGLRETFDHEASLYAEIRSR-GIAFTRTVDTIDTA 141 (201)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEEE-TTEEEEEEEEEEEGGGSTTHHHHCCTTSCHHHHHHHT-TCCCCEEEEEEEEE
T ss_pred HHHHHhcCcCCCCeEEEEE---EEEEE-CCEEEEEEEEEEeHHHCCChhhcccccCcHHHHHHhC-CCceEEEEEEEEEE
Confidence 3467778876654333332 22222 4578777776655443332222 2345688999998 99988887777655
Q ss_pred CC
Q 033597 104 ER 105 (115)
Q Consensus 104 ~~ 105 (115)
.+
T Consensus 142 ~a 143 (201)
T 3f8l_A 142 LP 143 (201)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 271
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=24.91 E-value=77 Score=18.11 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=19.0
Q ss_pred HHHHHHHHHH-HhHhCCCCCceEEEEE
Q 033597 76 KLSSTIAEIL-QTKLLIDSSRFYIKLY 101 (115)
Q Consensus 76 ~~~~~i~~~l-~~~Lgv~~~ri~i~f~ 101 (115)
.-...+-+.| ++..|+|+++..+.|.
T Consensus 42 ~TV~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 42 DTILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp CBHHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred ChHHHHHHHHHHHhcCCChhhEEEEEC
Confidence 3455566666 6667999999998874
No 272
>1rxl_A AFAE-DSC, afimbrial adhesin AFA-III, AFA-III, AFAE-3; DAF, afimbrial sheath, DAEC, UPEC, IG-like domain, donor strand complemented; NMR {Escherichia coli} SCOP: b.2.3.6 PDB: 2ixq_B 2ver_A*
Probab=24.90 E-value=54 Score=20.61 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=19.4
Q ss_pred CCceEEEEEecCCCCceecCccC
Q 033597 93 SSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 93 ~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
.++++|.+...+.++|-.+|.+|
T Consensus 75 tdkl~V~l~a~dg~~WT~d~gv~ 97 (156)
T 1rxl_A 75 RDKLYVNIRPMDNSAWTTDNGVF 97 (156)
T ss_dssp CCEEEEEEEESSSCCEEECSSEE
T ss_pred ccEEEEEEEecCCCCceecCCEE
Confidence 48999999999999998877654
No 273
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=24.85 E-value=92 Score=19.59 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 23 IDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp HHHHHHHHHHHHCCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 556677778889999999998874
No 274
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=24.85 E-value=78 Score=17.70 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=17.0
Q ss_pred CCChhhhHHHHHHHHHHHHhHh
Q 033597 68 SLGPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 68 ~~~~~~~~~~~~~i~~~l~~~L 89 (115)
..++++++.+++++.+.|...+
T Consensus 48 ~V~~~qR~~iAe~Fa~AL~~Sv 69 (80)
T 2juw_A 48 KVPSESRQAVAEQFAKALAQSV 69 (80)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3678899888888888877654
No 275
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=24.75 E-value=84 Score=20.70 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=16.9
Q ss_pred HHhHhCCCCCceEEEEEecC
Q 033597 85 LQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 85 l~~~Lgv~~~ri~i~f~~~~ 104 (115)
+.+..+|+++++.|.++|++
T Consensus 85 ~~~~yki~~~~ilVihDdld 104 (199)
T 4fyj_A 85 LAGFFRIAPDAILVAHDELD 104 (199)
T ss_dssp HHHHTTCCGGGEEEEEEETT
T ss_pred HHHHhCCCHHHEEEEEecCC
Confidence 34557999999999999986
No 276
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=24.58 E-value=69 Score=16.92 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhHhCCCCC
Q 033597 75 GKLSSTIAEILQTKLLIDSS 94 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ 94 (115)
......+.+.+.+.|+++++
T Consensus 3 ~~i~~~l~~i~~~~l~~~~~ 22 (82)
T 2ava_A 3 KETIDKVSDIVKEKLALGAD 22 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 45667788888888988765
No 277
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=24.49 E-value=1.8e+02 Score=20.19 Aligned_cols=64 Identities=11% Similarity=0.163 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCC--CceeEEEEEeecC--CChhhhHHHHHHHHHHHH
Q 033597 19 DILRDATKAVAKILGKSESYVMILINGGVPIAFAGTE--APAAYGELISIGS--LGPSVNGKLSSTIAEILQ 86 (115)
Q Consensus 19 ~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~--~p~~~v~i~~~~~--~~~~~~~~~~~~i~~~l~ 86 (115)
.+++.+=+.+.+....+.+ .-|+++.-++ |-++ .|..||||=|... .+++.-+.+++++.+.+.
T Consensus 115 ~~~~~~L~~l~~~~~~~~~-fev~~EATHH---GPt~~~~Ps~FVEIGSte~eW~d~~a~~~vA~av~~~l~ 182 (282)
T 1yqe_A 115 QTMKNYVLALRERLDRKPE-FEFTMEVTHH---GPSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIR 182 (282)
T ss_dssp HHHHHHHHHHHTTGGGSTT-CEEEECCSCS---SCCCCCSCEEEEEEEESHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCC-cEEEEEcccc---CCCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhc
Confidence 4455555555554423445 6666765433 5443 6999999988653 566666666666666655
No 278
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=24.49 E-value=59 Score=16.64 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhHh
Q 033597 74 NGKLSSTIAEILQTKL 89 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~L 89 (115)
+++++..|.++|.+.+
T Consensus 2 ~K~la~sIi~FL~~~~ 17 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQL 17 (52)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhc
Confidence 4678888888888776
No 279
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=24.46 E-value=86 Score=18.04 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+.+.+++..|||+++-...|.
T Consensus 36 v~~~ke~V~eqTgIp~~~Q~LL~e 59 (94)
T 4efo_A 36 ATIFHELVYKQTKIISSNQELIYE 59 (94)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhC
Confidence 456788899999999988877664
No 280
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=24.22 E-value=79 Score=17.70 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=16.9
Q ss_pred CChhhhHHHHHHHHHHHHhHhC
Q 033597 69 LGPSVNGKLSSTIAEILQTKLL 90 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lg 90 (115)
.++++++.+++++.+.|...+.
T Consensus 49 V~~~qR~~iAe~Fa~AL~~Svk 70 (80)
T 2juz_A 49 VPQTQCEALAQAFSNSLINAVK 70 (80)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888776553
No 281
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Probab=24.20 E-value=72 Score=19.76 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhHhCCCCCceE
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFY 97 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~ 97 (115)
.+-...|+..|.+..+|++++|+
T Consensus 105 ~~~~~~L~~~l~~~y~i~~~~I~ 127 (159)
T 1yb0_A 105 ENNAVDVVRQLMSMYNIPIENVR 127 (159)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHHHHHhCCChhhEE
Confidence 34467778888889999998854
No 282
>2ooi_A SA0254 protein; staphylocococcus aureus, structural genomics, PSI-2, MCSG, P structure initiative; 2.60A {Staphylococcus aureus subsp} SCOP: d.190.1.2
Probab=24.00 E-value=1.2e+02 Score=18.09 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=40.5
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeec----CCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIG----SLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~----~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
..+++.++.++..-.+.+. ++.+. ...|.++-...... ++.. ..+..-+.++|++.+|++..+..-.+.
T Consensus 35 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~ylp~~~~~~l~~---~~~~~sly~~l~~~~g~~~~~~~~~i~ 107 (162)
T 2ooi_A 35 KSVQDELQLNADDTVYYLE---RLRFV-DDDVLCIEYSYYHKEIVKYLND---DIAKGSIFDYLESNMKLRIGFSDIFFN 107 (162)
T ss_dssp HHHHHHTTCCSSSCEEEEE---EEEEE-TTEEEEEEEEEEEHHHHCCCCH---HHHTSCHHHHHHHTSCCCEEEEEEEEE
T ss_pred HHHHHhcCcCCCCEEEEEE---EEEeE-CCcEEEEEEEEeeHHHcCCcCH---HHhcCCHHHHHHHhcCCceeeEEEEEE
Confidence 4577788876554333332 22222 34676666655432 2332 222345888999999988777666555
Q ss_pred ec
Q 033597 102 DV 103 (115)
Q Consensus 102 ~~ 103 (115)
-.
T Consensus 108 a~ 109 (162)
T 2ooi_A 108 VD 109 (162)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 283
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=23.75 E-value=1.1e+02 Score=21.12 Aligned_cols=41 Identities=17% Similarity=0.098 Sum_probs=29.9
Q ss_pred EeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCce
Q 033597 7 YTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAPA 58 (115)
Q Consensus 7 ~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~ 58 (115)
=|....++++-++.+..|-+.+++.+ ....++..|||-.|.
T Consensus 198 GTG~tAt~e~aqevh~~IR~~l~~~~-----------a~~~rIlYGGSV~~~ 238 (272)
T 4g1k_A 198 GTGKSATAEQAQQVHAFLRGRLAAKG-----------AGHVSLLYGGSVKAD 238 (272)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHT-----------CTTSCEEECSCCCTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhh-----------cCCceEEEcCCcCHh
Confidence 36667777777778888888887766 346688889987653
No 284
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=23.69 E-value=83 Score=21.32 Aligned_cols=22 Identities=0% Similarity=-0.109 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHhCCCCCceEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
..++.+.+.+..||+++||++.
T Consensus 141 l~~~i~~~~~~~~id~~ri~l~ 162 (285)
T 4fhz_A 141 LDAFLDERLAEEGLPPEALALV 162 (285)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHHhCCCccceEEE
Confidence 3344455566789999999984
No 285
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=23.66 E-value=1.3e+02 Score=18.07 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=19.0
Q ss_pred hhhhHHHH----HHHHHHHHhHhCCCCCceEEE
Q 033597 71 PSVNGKLS----STIAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 71 ~~~~~~~~----~~i~~~l~~~Lgv~~~ri~i~ 99 (115)
.+.|.+++ .++.++|.+. ||+++|+.+.
T Consensus 76 ~~~N~~LS~~RA~aV~~~L~~~-Gi~~~ri~~~ 107 (134)
T 2aiz_P 76 PEYNIALGQRRADAVKGYLAGK-GVDAGKLGTV 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCHHHEEEE
Confidence 34566664 4566666653 9999999765
No 286
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.56 E-value=43 Score=19.50 Aligned_cols=23 Identities=4% Similarity=0.065 Sum_probs=17.6
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 48 ~kL~~~y~ek~gi~~~~~rf~Fd 70 (104)
T 1wz0_A 48 SKLMKAYCERQGLSMRQIRFRFD 70 (104)
T ss_dssp HHHHHHHHHHHTCCTTTSCEESS
T ss_pred HHHHHHHHHHhCCCcceEEEEEC
Confidence 44566677889999998888774
No 287
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=23.56 E-value=90 Score=20.71 Aligned_cols=21 Identities=5% Similarity=0.083 Sum_probs=17.1
Q ss_pred HHHhHhCCCCCceEEEEEecC
Q 033597 84 ILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 84 ~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
.+.+..+|+++++.|.++|++
T Consensus 97 ~~~~~yki~~e~ilVihDdLD 117 (207)
T 3nea_A 97 KVANFYKIAPAEILVVHDELD 117 (207)
T ss_dssp HHHHHHTCCGGGEEEEEEETT
T ss_pred HHHHHhCCCHHHEEEEEEcCC
Confidence 334457999999999999986
No 288
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=23.55 E-value=90 Score=21.21 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=19.2
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCCCceEE
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
.+++|.+.+++.+ ..|.+..+|++++|.-
T Consensus 122 ~t~aQ~~al~~L~-~~L~~~y~i~~~~V~g 150 (261)
T 3d2y_A 122 FEPAQIQALIPLA-KDIIARYHIKPENVVA 150 (261)
T ss_dssp CCHHHHHHHHHHH-HHHHHHHTCCGGGEEE
T ss_pred CCHHHHHHHHHHH-HHHHHHcCCCcccEec
Confidence 4567766666554 4455556999988753
No 289
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=23.38 E-value=58 Score=19.20 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=17.2
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+.+.+..|++++.+.+.|.
T Consensus 50 ~kL~~ay~ek~gi~~~~~rfiFd 72 (110)
T 2k8h_A 50 KKLIDTYCKKQGISRNSVRFLFD 72 (110)
T ss_dssp HHHHHHHHHHHTCCSSSCEEESS
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 44556667789999999888774
No 290
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=23.30 E-value=81 Score=18.20 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhHhCCCCCce
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
+..+...+.+.+.+.||++++.+
T Consensus 5 ~~~i~~~l~~il~~~l~~~~~~i 27 (115)
T 1klp_A 5 QEEIIAGIAEIIEEVTGIEPSEI 27 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTC
T ss_pred HHHHHHHHHHHHHHHhCcCHHhC
Confidence 35677888999999999987654
No 291
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=23.29 E-value=62 Score=19.09 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEec-cCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCC
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPIAFA-GTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLIDS 93 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~g-g~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~ 93 (115)
++.++......++...+++.....-.|.+|.-+..= -.-.|-. +. ...++++...+-.+...+..+++||||+
T Consensus 9 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~l-id---~~~l~~~~~~~n~~~af~~Ae~~lgi~~ 82 (116)
T 1wyl_A 9 QEELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGL-LE---PSELQGLGALEATAWALKVAENELGITP 82 (116)
T ss_dssp HHHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTS-CC---CSSGGGCCHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCC-CC---HHHhccCCHHHHHHHHHHHHHHHcCCcc
Confidence 578888888877765466555444455554321110 0112211 11 2234455666677777888888999974
No 292
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=23.13 E-value=82 Score=21.15 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcceeEEEEeCCceE---E--ecc--CCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHh
Q 033597 17 ASDILRDATKAVAKILGKSESYVMILINGGVPI---A--FAG--TEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKL 89 (115)
Q Consensus 17 ~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~---~--~gg--~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~L 89 (115)
.+++.+..++.+.+.+. |... +-+..|.-+ + +.. ....+.++++. |++++ ....+.-.|...+.+++
T Consensus 39 ~~~l~~~aA~~l~~~l~-~~~v--iGla~G~T~~~~~~~l~~~~~~~~v~~v~L~--ggl~~-~~~~~~~~~~~~la~~~ 112 (255)
T 2okg_A 39 KKEMGRAAVACMKKRFS-GKNI--VAVTGGTTIEAVAEMMTPDSKNRELLFVPAR--GGLGE-DVKNQANTICAHMAEKA 112 (255)
T ss_dssp HHHHHHHHHHHHHHHCC-SEEE--EEECCSHHHHHHHHHCCCCTTCCEEEEEESE--EECC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCCE--EEECCcHHHHHHHHhhccccCCCCCEEEECC--CCCCC-CcccCHHHHHHHHHHHH
Confidence 35566666667777666 3333 333332211 0 011 22455666665 56766 55667778888999999
Q ss_pred CCCCCceEE
Q 033597 90 LIDSSRFYI 98 (115)
Q Consensus 90 gv~~~ri~i 98 (115)
+.++..+++
T Consensus 113 ~~~~~~l~~ 121 (255)
T 2okg_A 113 SGTYRLLFV 121 (255)
T ss_dssp TCEECCCCC
T ss_pred CCeeEEEec
Confidence 988776654
No 293
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=22.99 E-value=1.1e+02 Score=18.59 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=18.8
Q ss_pred hhhhHHHHHH----HHHHHHhHhCCCCCceEEE
Q 033597 71 PSVNGKLSST----IAEILQTKLLIDSSRFYIK 99 (115)
Q Consensus 71 ~~~~~~~~~~----i~~~l~~~Lgv~~~ri~i~ 99 (115)
.+.|.+++.+ +.++|.+ .||+++|+.+.
T Consensus 80 ~~~N~~LS~~RA~aV~~~L~~-~Gv~~~ri~~~ 111 (149)
T 2k1s_A 80 HDLNMRLSQQRADSVASALIT-QGVDASRIRTQ 111 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTCCGGGEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHH-cCCCHHHEEEE
Confidence 4566666665 5555554 39999998764
No 294
>2xse_A Thymine dioxygenase JBP1; oxidoreductase, DNA-binding; HET: MSE; 1.90A {Leishmania tarentolae}
Probab=22.72 E-value=2.2 Score=26.93 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhHhCCCCCceEEEEEecCCCCceecCcc
Q 033597 76 KLSSTIAEILQTKLLIDSSRFYIKLYDVERSFFGFNGST 114 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri~i~f~~~~~~~~g~~G~t 114 (115)
-|++-+...+.+++|.|.+.+-+.=-.+.-.+|.|||+-
T Consensus 103 ~~AaHL~~AC~~e~~Mp~~am~m~KLNVKLKDf~FGGTR 141 (170)
T 2xse_A 103 MYAVHLSAACAEELHMPEVAMSLRKLNVKLKDFNFGGTR 141 (170)
T ss_dssp HHHHHHHHHHHHTSCCCTTTTCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCCcHhhhHHHHhcccceecccCCch
Confidence 367777888888999998876554444444555555553
No 295
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=22.51 E-value=1.1e+02 Score=18.24 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=16.9
Q ss_pred HHHHHHHhHhCCCCCceEEEEE
Q 033597 80 TIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 80 ~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.|.+.+.+..|++++.+...|.
T Consensus 65 KLm~aY~er~Gl~~~~irFlFD 86 (115)
T 3kyd_D 65 KLKESYCQRQGVPMNSLRFLFE 86 (115)
T ss_dssp HHHHHHHHHHTCCTTSEEEEET
T ss_pred HHHHHHHHHhCCChhhEEEEEC
Confidence 3456666778999999998885
No 296
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=22.25 E-value=1e+02 Score=20.44 Aligned_cols=22 Identities=9% Similarity=0.030 Sum_probs=18.1
Q ss_pred HHHHhHhCCCCCceEEEEEecC
Q 033597 83 EILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 83 ~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
..+.+..+|+++++.|.++|++
T Consensus 89 ~~~~~~yki~~~~ilVihDdLd 110 (205)
T 1ryb_A 89 GPLAAYYQVPLRHILLIYDDTS 110 (205)
T ss_dssp HHHHHHTTCCGGGEEEEEEETT
T ss_pred HHHHHHhCCCHHHEEEEeeccc
Confidence 3344568999999999999996
No 297
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=22.19 E-value=71 Score=20.54 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhHhCCCCCceEE
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFYI 98 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~i 98 (115)
..+.+++.+.+.+++|+++++|+.
T Consensus 203 ~~m~~~v~~~l~~~~g~~~~~i~~ 226 (232)
T 1qfj_A 203 FEMAKIARDLFCSERNAREDRLFG 226 (232)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGEEC
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEE
Confidence 457788888886679999999875
No 298
>1vz6_A Ornithine acetyl-transferase; clavulanic acid, N-acetyl- ornithine, N-acetyl-glutamate, antibiotic; 2.75A {Streptomyces clavuligerus} SCOP: d.154.1.2 PDB: 1vz7_A 1vz8_A
Probab=21.87 E-value=2.2e+02 Score=20.90 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=29.0
Q ss_pred cCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEE
Q 033597 67 GSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKL 100 (115)
Q Consensus 67 ~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f 100 (115)
+..+-++=.+-+.++++.+.+.||++++.+.+.=
T Consensus 77 NA~TG~~G~~da~~~~~~~A~~lg~~~~~Vlv~S 110 (393)
T 1vz6_A 77 NVATGLEGEENAREVREAVARALGLPEGEMLIAS 110 (393)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCChhhEEEeC
Confidence 3467778889999999999999999999998753
No 299
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=21.80 E-value=53 Score=22.48 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=30.4
Q ss_pred EEeCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCc
Q 033597 6 LYTNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAP 57 (115)
Q Consensus 6 i~tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p 57 (115)
|=|....++++.++.+..|-+.+++.++.. +.++.++..|||-.|
T Consensus 175 IGTG~~At~e~aqevh~~IR~~l~~~~~~~-------~a~~~rIlYGGSV~~ 219 (254)
T 3m9y_A 175 IGTGKSSTSEDANEMCAFVRQTIADLSSKE-------VSEATRIQYGGSVKP 219 (254)
T ss_dssp CC--CCCCHHHHHHHHHHHHHHHHHHSCHH-------HHTTSEEEECSCCCT
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHhcChh-------hcCCccEEEcCCcCH
Confidence 346677777778888888888888887753 224566777877654
No 300
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=21.67 E-value=48 Score=28.21 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEEec--CCCCceecCc
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLYDV--ERSFFGFNGS 113 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~~~--~~~~~g~~G~ 113 (115)
.-.++....+.||||.++|.|...|- .|..+|..|+
T Consensus 1043 ~T~~aQiaAe~LGip~e~V~v~~~DT~~~P~~~~t~aS 1080 (1332)
T 3unc_A 1043 HTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAAS 1080 (1332)
T ss_dssp HHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTT
T ss_pred HHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCccHH
Confidence 34456667788999999999988764 3445555443
No 301
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=21.58 E-value=90 Score=18.79 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=19.1
Q ss_pred CChhhhHHHHHHHHHHHHhHhCCCC
Q 033597 69 LGPSVNGKLSSTIAEILQTKLLIDS 93 (115)
Q Consensus 69 ~~~~~~~~~~~~i~~~l~~~Lgv~~ 93 (115)
++++...+-.+...+..+++||||+
T Consensus 58 l~~~~~~~n~~~af~~Ae~~lgip~ 82 (128)
T 2d87_A 58 LSPQNRRQNFEVAFSSAETHADCPQ 82 (128)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHCCCC
T ss_pred cCccCHHHHHHHHHHHHHHcCCCCc
Confidence 4456666777888888899999874
No 302
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=21.55 E-value=1e+02 Score=17.69 Aligned_cols=23 Identities=4% Similarity=0.082 Sum_probs=16.9
Q ss_pred HHHHHHHHhHhCCCCCceEEEEE
Q 033597 79 STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 79 ~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
+.|.+...+..|++++.+...|.
T Consensus 50 ~kLm~aY~~~~g~~~~~vrF~FD 72 (97)
T 2jxx_A 50 KTLMSHYEEAMGLSGRKLSFFFD 72 (97)
T ss_dssp HHHHHHHHHHTTCSSSCCEEEET
T ss_pred HHHHHHHHHHHCCCcccEEEEEC
Confidence 34455566789999998888874
No 303
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=21.46 E-value=29 Score=22.96 Aligned_cols=27 Identities=4% Similarity=0.115 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhHhCCCCCceEEEEEe
Q 033597 75 GKLSSTIAEILQTKLLIDSSRFYIKLYD 102 (115)
Q Consensus 75 ~~~~~~i~~~l~~~Lgv~~~ri~i~f~~ 102 (115)
.+=+..|.+++.+++|+.++ |-|.|.+
T Consensus 169 ~~eaaqI~DIV~r~tgv~~d-V~Vqf~p 195 (197)
T 3tuf_A 169 KSKATAIIDLVAKEIKTMKD-VAVTFEP 195 (197)
T ss_dssp HHHHHHHHHTSCHHHHTTSE-EEEEEEC
T ss_pred HHHHHHHHHHHHHhhCCCCc-eEEEeee
Confidence 34467889999999999988 9999987
No 304
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=21.42 E-value=1e+02 Score=20.64 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.6
Q ss_pred HHhHhCCCCCceEEEEEecC
Q 033597 85 LQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 85 l~~~Lgv~~~ri~i~f~~~~ 104 (115)
+.+..+|+++++.|.++|++
T Consensus 98 ~~~~yki~~e~ilVihDdLD 117 (222)
T 3v2i_A 98 LAHFFKILPNEILVAHDELD 117 (222)
T ss_dssp HHHHHTCCGGGEEEEEEETT
T ss_pred HHHHhCCCHHHEEEEEecCC
Confidence 34457899999999999986
No 305
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=21.10 E-value=57 Score=22.55 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=31.3
Q ss_pred eCCCCCccCHHHHHHHHHHHHHHHhCCCcceeEEEEeCCceEEeccCCCc
Q 033597 8 TNVPVDAVIASDILRDATKAVAKILGKSESYVMILINGGVPIAFAGTEAP 57 (115)
Q Consensus 8 tn~~~~~~~~~~~~~~l~~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p 57 (115)
|....++++.++.+..|-+.+++.++.. +....++..|||-.|
T Consensus 179 TG~tAtpe~aqevh~~IR~~l~~~~~~~-------~a~~~rIlYGGSV~~ 221 (267)
T 3ta6_A 179 TGRVASAADAQEVCAAIRKELASLASPR-------IADTVRVLYGGSVNA 221 (267)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHSCHH-------HHTTSCEEECSCCCT
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHhhChh-------hhccceEEEcCCcCH
Confidence 6667777777888888888888887753 224567788888755
No 306
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii}
Probab=21.02 E-value=1.1e+02 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHhCCCCCceEEEEE
Q 033597 76 KLSSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 76 ~~~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
.+...+-+.+.+.+|++++++|+.|.
T Consensus 157 m~G~liK~y~a~~~gi~p~~i~vV~I 182 (457)
T 3lx4_A 157 MLAAMVKSYLAEKKGIAPKDMVMVSI 182 (457)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcccEEEEEE
Confidence 45556666788899999999998875
No 307
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.95 E-value=77 Score=19.61 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=25.9
Q ss_pred EEEEEeecCCChhhhHHHHHHHHHHHHhHhCCCCCceEEEEEec
Q 033597 60 YGELISIGSLGPSVNGKLSSTIAEILQTKLLIDSSRFYIKLYDV 103 (115)
Q Consensus 60 ~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~~~ri~i~f~~~ 103 (115)
.++|.-.|.-+|.. ..|.+-|.+.++++++.|+|.=...
T Consensus 24 v~dV~HpG~aTpsr-----~eIrekLAk~y~~~~d~VvV~g~rT 62 (135)
T 3u5c_Y 24 VVDVLHPNRANVSK-----DELREKLAEVYKAEKDAVSVFGFRT 62 (135)
T ss_dssp EEEEECSSSCCCCH-----HHHHHHHHTTTTSCGGGEEEEEEEE
T ss_pred EEEEEeCCCCCCCH-----HHHHHHHHHHHCCCCCEEEEEeeEe
Confidence 34444444334443 3567778889999999998876655
No 308
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=20.90 E-value=1.2e+02 Score=20.83 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=25.5
Q ss_pred cCCCceeEEEEEeecCCChhhhHHHHHHHHHHHHhHhCCC
Q 033597 53 GTEAPAAYGELISIGSLGPSVNGKLSSTIAEILQTKLLID 92 (115)
Q Consensus 53 g~~~p~~~v~i~~~~~~~~~~~~~~~~~i~~~l~~~Lgv~ 92 (115)
|+.+.---+.+-.+...++..-.+....|.+.|.+.||++
T Consensus 8 ~~~~~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~ 47 (321)
T 3p7i_A 8 GSEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVK 47 (321)
T ss_dssp ------CCEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhcCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 4554333445555555677777777888999999999986
No 309
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=20.89 E-value=88 Score=20.46 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=18.5
Q ss_pred HHHHHhHhCCCCCceEEEEEecC
Q 033597 82 AEILQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 82 ~~~l~~~Lgv~~~ri~i~f~~~~ 104 (115)
...+.+..+++++++.|.++|++
T Consensus 76 V~~~~~~~ki~~~~ilVihDdld 98 (193)
T 4hoy_A 76 VVPFSKFYQIAPEAILIAHDELD 98 (193)
T ss_dssp HHHHHHHTTCCGGGEEEEEEETT
T ss_pred HHHHHHHcCCCchheEEeeeccc
Confidence 33455668999999999999986
No 310
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=20.85 E-value=1e+02 Score=18.40 Aligned_cols=24 Identities=8% Similarity=-0.075 Sum_probs=19.2
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+-+.+++..|||+++..+.|.
T Consensus 24 V~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 24 VFELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCCHHHeEEEEC
Confidence 456677788889999999988764
No 311
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, bordet bronchiseptica, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=20.73 E-value=1.4e+02 Score=17.65 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=43.6
Q ss_pred HHHHHHhCCCcceeEEEEeCCceEEeccCCCceeEEEEEeecCCChhh-hHHHH---HHHHHHHHhHhCCCCCceEEEEE
Q 033597 26 KAVAKILGKSESYVMILINGGVPIAFAGTEAPAAYGELISIGSLGPSV-NGKLS---STIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 26 ~~~a~~~~kp~~~i~v~~~~~~~~~~gg~~~p~~~v~i~~~~~~~~~~-~~~~~---~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
..+++.++.++..-.+.+. ++... ...|.++-.......+-+.. ...+. .-+.++|++.+|++..+..-.+.
T Consensus 33 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~~~~sly~~l~~~~g~~~~~~~~~i~ 108 (162)
T 3cnv_A 33 AEIARALELRAGETVVTIR---RQLSM-NHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLR 108 (162)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEES-SSSEEEEEEEEEEGGGCTTCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEE---EEEEe-CCceEEEEEEEEeHHHcCccchhhhhhccchHHHHHHHHcCCceEEEEEEEE
Confidence 3567788877654333333 23332 45787776665544332322 22343 35889999999998877666655
Q ss_pred ec
Q 033597 102 DV 103 (115)
Q Consensus 102 ~~ 103 (115)
-.
T Consensus 109 a~ 110 (162)
T 3cnv_A 109 AV 110 (162)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 312
>2bcm_B F1845 fimbrial protein; DAAE adhesin, donor strand complementation, cell adhesion; 1.48A {Escherichia coli}
Probab=20.68 E-value=73 Score=20.21 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=19.5
Q ss_pred CCceEEEEEecCCCCceecCccC
Q 033597 93 SSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 93 ~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
.++++|.+...+.++|-.+|.+|
T Consensus 78 ~dkl~V~l~a~dg~~WT~d~gv~ 100 (165)
T 2bcm_B 78 HDKLNVKLKATDGSSWTYGNGVF 100 (165)
T ss_dssp CCEEEEEEEETTCCCEEEETTEE
T ss_pred CCeEEEEEEecCCCCceecCCEE
Confidence 49999999999999998877654
No 313
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=20.57 E-value=47 Score=16.92 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=5.9
Q ss_pred HHHHhCCCccee
Q 033597 28 VAKILGKSESYV 39 (115)
Q Consensus 28 ~a~~~~kp~~~i 39 (115)
+|+.+++|++++
T Consensus 17 Ia~~L~R~p~hv 28 (52)
T 1k8b_A 17 LAKAVNRDEEFF 28 (52)
T ss_dssp HHHHHHTCHHHH
T ss_pred HHHHHCCCHHHH
Confidence 444555555543
No 314
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=20.50 E-value=1.1e+02 Score=18.40 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEE
Q 033597 78 SSTIAEILQTKLLIDSSRFYIKLY 101 (115)
Q Consensus 78 ~~~i~~~l~~~Lgv~~~ri~i~f~ 101 (115)
...+-+.+++..|+|+++..+.|.
T Consensus 24 V~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 24 VFELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCCCHHHeEEEeC
Confidence 455667788889999999988774
No 315
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=20.49 E-value=91 Score=20.37 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=17.2
Q ss_pred HHhHhCCCCCceEEEEEecC
Q 033597 85 LQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 85 l~~~Lgv~~~ri~i~f~~~~ 104 (115)
+.+..+|+++++.|.++|++
T Consensus 79 ~~~~yki~~~~ilVihDdld 98 (191)
T 2z2i_A 79 LAKFYSVAPANIIVIHDDLD 98 (191)
T ss_dssp HHHHTTCCGGGEEEEEEETT
T ss_pred HHHHhCCCHHHEEEEecccC
Confidence 44578999999999999986
No 316
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=20.47 E-value=90 Score=20.41 Aligned_cols=20 Identities=5% Similarity=0.240 Sum_probs=16.9
Q ss_pred HHhHhCCCCCceEEEEEecC
Q 033597 85 LQTKLLIDSSRFYIKLYDVE 104 (115)
Q Consensus 85 l~~~Lgv~~~ri~i~f~~~~ 104 (115)
+.+..+|+++++.|.++|++
T Consensus 77 ~~~~yki~~~~ilVihDdld 96 (193)
T 2pth_A 77 MASFFRINPDEILVAHDELD 96 (193)
T ss_dssp HHHHHTCCGGGEEEEEEETT
T ss_pred HHHHhCCCHHHEEEEecccC
Confidence 44567899999999999996
No 317
>1ut1_A DRAA, DR hemagglutinin structural subunit; adhesin, DRAE, fimbrial adhesin, UPEC, DAEC; 1.7A {Escherichia coli} SCOP: b.2.3.6 PDB: 1usq_A* 2jkj_A* 2jkl_A* 2jkn_A* 2w5p_A 1usz_A 1ut2_A
Probab=20.31 E-value=74 Score=19.85 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=19.3
Q ss_pred CCceEEEEEecCCCCceecCccC
Q 033597 93 SSRFYIKLYDVERSFFGFNGSTF 115 (115)
Q Consensus 93 ~~ri~i~f~~~~~~~~g~~G~t~ 115 (115)
.++++|.+...+.++|-.+|.+|
T Consensus 87 ~dkl~V~l~atdg~~Wt~d~gv~ 109 (148)
T 1ut1_A 87 RDKLYVNIRPTDNSAWTTDNGVF 109 (148)
T ss_dssp CCEEEEEEEESSSCCEEEETTEE
T ss_pred ccEEEEEEEecCCCCceecCCEE
Confidence 58999999999999998877654
No 318
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=20.15 E-value=1.3e+02 Score=16.91 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHhHhCCCCC-ceEEEEE
Q 033597 82 AEILQTKLLIDSS-RFYIKLY 101 (115)
Q Consensus 82 ~~~l~~~Lgv~~~-ri~i~f~ 101 (115)
.+...+.-||+++ +|+..|.
T Consensus 36 i~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 36 IKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp HHHHHHHHTCCCCTTCEEEET
T ss_pred HHHHHHHcCCCcCceEEEEEc
Confidence 3444456899998 9998884
No 319
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=20.12 E-value=1e+02 Score=19.10 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHHHHHh
Q 033597 15 VIASDILRDATKAVAKIL 32 (115)
Q Consensus 15 ~~~~~~~~~l~~~~a~~~ 32 (115)
.+.++|.++|.++|+++.
T Consensus 108 ~ER~rwi~dL~esI~e~~ 125 (140)
T 3qwm_A 108 QDRKKFTDDLRESIAEVQ 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 348899999999999874
No 320
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=20.03 E-value=69 Score=16.68 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHhCCCCCce
Q 033597 77 LSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 77 ~~~~i~~~l~~~Lgv~~~ri 96 (115)
..+.+.+.+.+.||++++.+
T Consensus 4 i~~~l~~~~~~~l~~~~~~i 23 (78)
T 1l0i_A 4 IEERVKKIIGEQLGVKQEEV 23 (78)
T ss_dssp HHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHhCCCHHHC
Confidence 45667778888888876654
No 321
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=20.02 E-value=51 Score=18.60 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHhHhCCCCCce
Q 033597 74 NGKLSSTIAEILQTKLLIDSSRF 96 (115)
Q Consensus 74 ~~~~~~~i~~~l~~~Lgv~~~ri 96 (115)
...+...+.+.+.+.||++++.+
T Consensus 20 ~~~i~~~l~~iia~~l~~~~~~i 42 (97)
T 3ejb_A 20 MSTIEERVKKIIGEQLGVKQEEV 42 (97)
T ss_dssp CCCHHHHHHHHHHHHSCCCTTTS
T ss_pred HHHHHHHHHHHHHHHHCcCHHHC
Confidence 34577788889999999988765
Done!