BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033598
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Y|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate
pdb|1H1Z|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
pdb|1H1Z|B Chain B, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3-
Epimerase From Rice Complexed With Sulfate And Zinc
Length = 228
Score = 189 bits (480), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 92/115 (80%), Positives = 102/115 (88%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
MRPGV+L+PGT VEEV+PLVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 114 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 173
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
LDIEVDGGLGPSTI AASAGANCIVAGSS+FGA EP VIS +RKSVE +Q S
Sbjct: 174 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>pdb|3OVP|A Chain A, Crystal Structure Of Hrpe
pdb|3OVP|B Chain B, Crystal Structure Of Hrpe
pdb|3OVQ|A Chain A, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVQ|B Chain B, Crytal Structure Of Hrpe And D-Ribulose-5-Phospate Complex
pdb|3OVR|A Chain A, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
pdb|3OVR|B Chain B, Crystal Structure Of Hrpe And D-Xylulose 5-Phosphate
Complex
Length = 228
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 86/116 (74%), Gaps = 4/116 (3%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M+ G+A+KPGTSVE + P AN ++M LVMTVEPGFGGQKFM +MM KV LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPW---ANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV-EDAQKNS 115
LDIEVDGG+GP T+ + A AGAN IV+GS++ + +P VI+L+R E AQK S
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQKRS 225
>pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
pdb|1TQX|B Chain B, Crystal Structure Of Pfal009167 A Putative D-Ribulose
5-Phosphate 3- Epimerase From P.Falciparum
Length = 227
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
G+++KP T V+++ P+++ N + VLVMTVEPGFGGQ FM +MM KV LR +Y +L+I
Sbjct: 118 GISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNI 176
Query: 64 EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
+VDGGL T +AS GAN IVAG+S+F A +P +VI MR SV+ N
Sbjct: 177 QVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227
>pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
pdb|3QC3|B Chain B, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase
(Np_954699) From Homo Sapiens At 2.20 A Resolution
Length = 225
Score = 113 bits (283), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 4/111 (3%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
G+A+KPGTSVE + P AN ++ LV TVEPGFGGQKF + KV LR ++PSLDI
Sbjct: 117 GLAIKPGTSVEYLAPW---ANQIDXALVXTVEPGFGGQKFXEDXXPKVHWLRTQFPSLDI 173
Query: 64 EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK-SVEDAQK 113
EVDGG+GP T+ + A AGAN IV+GS++ + +P VI+L+R E AQK
Sbjct: 174 EVDGGVGPDTVHKCAEAGANXIVSGSAIXRSEDPRSVINLLRNVCSEAAQK 224
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 9/111 (8%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPV-EMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ G L P T ++ +E PV +++L+M+V PGFGGQ F+PE++ K+R+LR
Sbjct: 114 KAGAVLNPSTPLD----FLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169
Query: 61 --LD--IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
LD IEVDGGL P+ + AGAN IVAGS+VF AP A I+ +R S
Sbjct: 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 220
>pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of
D-Ribulose-Phosphate 3- Epimerase From Francisella
Tularensis
Length = 246
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
++ G+AL P T ++ VE + ++ VL+M+V PGFGGQKF+P M+DK + + S
Sbjct: 135 IQAGLALNPATGID-CLKYVE--SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISS 191
Query: 61 LD----IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
D +E+DGG+ P IAE A G N VAGS++F + I MR +
Sbjct: 192 TDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244
>pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|B Chain B, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|C Chain C, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|D Chain D, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|E Chain E, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|F Chain F, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|G Chain G, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|H Chain H, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|I Chain I, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|J Chain J, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|K Chain K, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
pdb|2FLI|L Chain L, The Crystal Structure Of D-Ribulose 5-Phosphate
3-Epimerase From Streptococus Pyogenes Complexed With
D-Xylitol 5- Phosphate
Length = 220
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYP- 59
M+ GV + PGT + PL++ V+ VL+MTV PGFGGQ F+PE ++KV ++
Sbjct: 110 MKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE 166
Query: 60 ---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSV 108
S DIEVDGG+ TI AGAN VAGS +F A + + +R ++
Sbjct: 167 KGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 218
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Query: 2 RPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN----R 57
+ GV L PGT + + +++ V++VL+M+V PGFGGQ F+ + K+ LR R
Sbjct: 120 KAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAER 176
Query: 58 YPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
+ IEVDGG+GP + AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 177 GLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTS 226
>pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CT7|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K-12
pdb|3CTL|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|B Chain B, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|C Chain C, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|D Chain D, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|E Chain E, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
pdb|3CTL|F Chain F, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase
From Escherichia Coli K12 Complexed With D-Glucitol 6-
Phosphate And Magnesium
Length = 231
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDK---VRSLRNR 57
M+ G+ L P T VE + + A+ + VMTV+PGF GQ F+PEM+DK +++ R R
Sbjct: 107 MKVGLILNPETPVEAMKYYIHKADKIT---VMTVDPGFAGQPFIPEMLDKLAELKAWRER 163
Query: 58 Y-PSLDIEVDGGLGPSTIAEAASAGANCIVAGSS 90
+IEVDG +T + +AGA+ + G+S
Sbjct: 164 EGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTS 197
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 54 LRNRYPSLDIEVDGGLGPSTIAEAA-SAGANCIVAGSSVFGAPE 96
L+ RYP +D LG S EAA +AG+ + G+++FGA +
Sbjct: 191 LKTRYPHIDTL---ALGQSDDMEAAIAAGSTMVAIGTAIFGARD 231
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 88
++DKV+ +R +YPSL+I + G + + +A AGAN + G
Sbjct: 284 VIDKVKEVRAKYPSLNI-IAGNVATAEATKALIEAGANVVKVG 325
>pdb|4DBE|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus Complexed
With Inhibitor Bmp
pdb|4DBE|B Chain B, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus Complexed
With Inhibitor Bmp
pdb|4DBD|A Chain A, Crystal Structure Of Orotidine 5'-monophosphate
Decarboxylase From Sulfolobus Solfataricus
Length = 222
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 48 MDKVRSLRNRYPSLDIEVDGGLGPS--TIAEAASAGANCIVAGSSVFGAPEPAHVISLMR 105
+D + R + + I V G+G + +A AGA+ + G S++ A P + +
Sbjct: 146 LDHITQYRRDFEKMTI-VSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTIN 204
Query: 106 KSVED 110
K +ED
Sbjct: 205 KIIED 209
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 47 MMDKVRSLRNRYPSLDIEVDGGLGPSTIAEA-ASAGANCIVAG 88
++DKV+ +R +YPSL+I + G + + +A AGAN + G
Sbjct: 284 VIDKVKEVRAKYPSLNI-IAGNVATAEATKALIEAGANVVKVG 325
>pdb|3F4W|A Chain A, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
pdb|3F4W|B Chain B, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
Length = 211
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 63 IEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA 98
I V GG+ T+ + A G + ++ GS++ A +PA
Sbjct: 162 IAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPA 197
>pdb|1YAD|A Chain A, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|B Chain B, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|C Chain C, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|D Chain D, Structure Of Teni From Bacillus Subtilis
pdb|3QH2|A Chain A, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|B Chain B, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|C Chain C, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|D Chain D, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
Length = 221
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 67 GGLGPSTIAEAASAGANCIVAGSSVFGAPEP 97
GG+ P + + AGA+ I S +F + EP
Sbjct: 171 GGMTPDRLRDVKQAGADGIAVMSGIFSSAEP 201
>pdb|1IWP|A Chain A, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1IWP|L Chain L, Glycerol Dehydratase-Cyanocobalamin Complex Of Klebsiella
Pneumoniae
pdb|1MMF|A Chain A, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
pdb|1MMF|L Chain L, Crystal Structure Of Substrate Free Form Of Glycerol
Dehydratase
Length = 555
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 38 FGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
F G F E D L+ D+ VDGGL P T AE + A +VF
Sbjct: 375 FAGSNFDAEDFDDYNILQR-----DLMVDGGLRPVTEAETIAIRQKAARAIQAVF 424
>pdb|2O4M|A Chain A, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|B Chain B, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|C Chain C, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
pdb|2O4M|P Chain P, Structure Of Phosphotriesterase Mutant I106gF132GH257Y
Length = 331
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 38 FGGQKFMPEMMDKVRSLRNRYPS-----LDIEV-DGGLGPSTIAEAASAGANCIVAGSSV 91
FG +K + E VR LR + +D+ DGG S +AE + A IVA + +
Sbjct: 40 FGSRKALAE--KAVRGLRRARAAGVRTIVDVSTFDGGRDVSLLAEVSRAADVHIVAATGL 97
Query: 92 FGAPEPAHVISLMRKSVED 110
+G P +S+ +SVE+
Sbjct: 98 WGDPP----LSMRLRSVEE 112
>pdb|2CZ5|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZ5|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3
pdb|2CZD|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZD|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 At 1.6 A Resolution
pdb|2CZE|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZE|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Ump
pdb|2CZF|A Chain A, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
pdb|2CZF|B Chain B, Crystal Structure Of Orotidine 5'-Phosphate Decarboxylase
From Pyrococcus Horikoshii Ot3 Complexed With Xmp
Length = 208
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 76 EAASAGANCIVAGSSVFGAPEP 97
+A AGA+ I+ G +++ AP P
Sbjct: 173 DAVKAGADYIIVGRAIYNAPNP 194
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 9 PGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKF---MPEMMDKVR 52
P EVYPL++ ++ L M+++ G G +F +P ++ K++
Sbjct: 731 PDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVILAKIK 777
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 66 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVI 101
DGG+ S I++A +AGA+C+ GS G E P VI
Sbjct: 340 DGGIRFSGDISKAIAAGASCVXVGSXFAGTEEAPGEVI 377
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 66 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVISLMRKS 107
DGG+ S I++A +AGA+C++ GS G E P VI +S
Sbjct: 239 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRS 282
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 66 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVISLMRKS 107
DGG+ S I++A +AGA+C++ GS G E P VI +S
Sbjct: 217 DGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRS 260
>pdb|2WCD|A Chain A, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|B Chain B, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|C Chain C, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|D Chain D, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|E Chain E, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|F Chain F, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|G Chain G, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|H Chain H, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|I Chain I, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|J Chain J, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|K Chain K, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|L Chain L, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|M Chain M, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|N Chain N, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|O Chain O, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|P Chain P, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|Q Chain Q, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|R Chain R, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|S Chain S, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|T Chain T, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|U Chain U, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|V Chain V, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|W Chain W, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|X Chain X, Crystal Structure Of The Assembled Cytolysin A Pore
Length = 309
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 25 PVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSL 61
P +++ ++ G K +PE+ +K++S++N + +L
Sbjct: 195 PFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTL 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,413,574
Number of Sequences: 62578
Number of extensions: 124694
Number of successful extensions: 386
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 33
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)