RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 033598
(115 letters)
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate
pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2
PDB: 1h1z_A
Length = 228
Score = 189 bits (483), Expect = 8e-63
Identities = 92/115 (80%), Positives = 102/115 (88%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
MRPGV+L+PGT VEEV+PLVE NPVE+VLVMTVEPGFGGQKFMPEMM+KVR+LR +YPS
Sbjct: 114 MRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPS 173
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
LDIEVDGGLGPSTI AASAGANCIVAGSS+FGA EP VIS +RKSVE +Q S
Sbjct: 174 LDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEGSQNKS 228
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics,
protein structure initiative, PSI; 2.00A {Plasmodium
falciparum} SCOP: c.1.2.2
Length = 227
Score = 180 bits (458), Expect = 6e-59
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ G+++KP T V+++ P+++ N + VLVMTVEPGFGGQ FM +MM KV LR +Y +
Sbjct: 115 LWCGISIKPKTDVQKLVPILD-TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKN 173
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKN 114
L+I+VDGGL T +AS GAN IVAG+S+F A +P +VI MR SV+ N
Sbjct: 174 LNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKYLNN 227
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE;
1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A
Length = 228
Score = 176 bits (448), Expect = 2e-57
Identities = 61/113 (53%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
M+ G+A+KPGTSVE + P ++M LVMTVEPGFGGQKFM +MM KV LR ++PS
Sbjct: 113 MKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPS 169
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
LDIEVDGG+GP T+ + A AGAN IV+GS++ + +P VI+L+R +A +
Sbjct: 170 LDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCSEAAQ 222
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 137 bits (348), Expect = 2e-42
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
M+ GV + PGT + PL++ V+ VL+MTV PGFGGQ F+PE ++KV ++
Sbjct: 110 MKAGVVINPGTPATALEPLLD---LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDE 166
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
+ S DIEVDGG+ TI AGAN VAGS +F A + + +R ++
Sbjct: 167 KGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 136 bits (345), Expect = 7e-42
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 7/117 (5%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
+ G L P T ++ + ++ +++L+M+V PGFGGQ F+PE++ K+R+LR
Sbjct: 113 KKAGAVLNPSTPLDFLEYVLPV---CDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
R IEVDGGL P+ + AGAN IVAGS+VF AP A I+ +R S +
Sbjct: 170 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEPQ 226
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 136 bits (345), Expect = 9e-42
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRY-- 58
++ G+AL P T ++ + + ++ VL+M+V PGFGGQKF+P M+DK + +
Sbjct: 135 IQAGLALNPATGIDCLKYVESN---IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISS 191
Query: 59 --PSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
+ +E+DGG+ P IAE A G N VAGS++F + I MR +
Sbjct: 192 TDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin
cycle, oxidative pentose PH pathway; 2.30A {Solanum
tuberosum} SCOP: c.1.2.2
Length = 230
Score = 134 bits (340), Expect = 4e-41
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
+ GV L PGT + + +++ V++VL+M+V PGFGGQ F+ + K+ LR
Sbjct: 119 AKAGVVLNPGTPLTAIEYVLDA---VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAE 175
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
R + IEVDGG+GP + AGAN +VAGS+VFGAP+ A I ++ S
Sbjct: 176 RGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKR 228
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 129 bits (327), Expect = 4e-39
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRN---- 56
M+ G+ L P T VE + + + + VMTV+PGF GQ F+PEM+DK+ L+
Sbjct: 107 MKVGLILNPETPVEAMKYYIH---KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRER 163
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSS-VFGAPEP-AHVISLMRKSVEDAQK 113
+IEVDG +T + +AGA+ + G+S +F E +M + A+
Sbjct: 164 EGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILAAKS 222
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS
epimerase family, structural genomics, joint center for
STR genomics, JCSG; 1.91A {Haemophilus somnus}
Length = 237
Score = 121 bits (307), Expect = 4e-36
Identities = 22/114 (19%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLR----N 56
+ G L P T + E+ P ++ ++++ ++T++P G + ++D+V + N
Sbjct: 127 VLIGACLCPETPISELEPYLDQ---IDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGN 183
Query: 57 RYPSLDIEVDGGLGPSTIAEAASAGANC--IVAGSSVFGAPEPAHVISLMRKSV 108
R I +DG + +V+GS++F E + + + S+
Sbjct: 184 RRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSSI 236
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A
{Streptococcus mutans} PDB: 3exs_A* 3ext_A
Length = 221
Score = 79.6 bits (196), Expect = 8e-20
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 4 GVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDI 63
V L + ++ ++ A + + + + G+ + + ++KV+ L +
Sbjct: 115 QVELYGDWTYDQAQQWLD-AGISQAIYHQSRDALLAGETWGEKDLNKVKKLIE--MGFRV 171
Query: 64 EVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
V GGL T+ +AG + A PA + ++
Sbjct: 172 SVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIK 217
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate
decarboxylase, ULAD, niaid,CSG bound, biosynthetic
protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A*
Length = 218
Score = 75.0 bits (184), Expect = 4e-18
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ + ++++ V+ + + + + G + + +DK+R L
Sbjct: 110 GEIQIEIYGNWTMQDAKAWVD-LGITQAIYHRSRDAELAGIGWTTDDLDKMRQLSAL--G 166
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHV 100
+++ + GG+ P I +AG ++ GA
Sbjct: 167 IELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTA 206
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta
barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP:
c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A*
1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A*
1xbx_A*
Length = 216
Score = 75.1 bits (184), Expect = 4e-18
Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 1 MRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPS 60
+ L + E+ + A ++V + + G + + ++ L +
Sbjct: 107 GDVQIELTGYWTWEQAQQWRD-AGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD--MG 163
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVED 110
+ V GGL + + +AG S+ A P ++S+ +
Sbjct: 164 FKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase;
1.65A {Salmonella typhimurium}
Length = 211
Score = 70.2 bits (172), Expect = 2e-16
Identities = 16/84 (19%), Positives = 35/84 (41%)
Query: 29 VLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAG 88
++ V G Q + +D + ++ I V GG+ T+ + A G + ++ G
Sbjct: 128 ADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVG 187
Query: 89 SSVFGAPEPAHVISLMRKSVEDAQ 112
S++ A +PA + + +
Sbjct: 188 SAITHAADPAGEARKISQVLLQHH 211
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A
{Mycobacterium gastri}
Length = 207
Score = 68.5 bits (167), Expect = 1e-15
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 28 MVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVA 87
+ + G Q ++ + + + + V GG+ +TI AGA VA
Sbjct: 127 GAKFVEMHAGLDEQAKPGFDLNGLLAAGEK-ARVPFSVAGGVKVATIPAVQKAGAEVAVA 185
Query: 88 GSSVFGAPEPAHVISLMRKSV 108
G +++GA +PA +R ++
Sbjct: 186 GGAIYGAADPAAAAKELRAAI 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 7e-04
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 37/111 (33%)
Query: 10 GTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIE--VDG 67
G S+ ++ V NPV + + FGG+K + +R Y ++ E VDG
Sbjct: 1658 GFSILDI---VIN-NPVNLTIH------FGGEK--------GKRIRENYSAMIFETIVDG 1699
Query: 68 GLGPSTIAEAASAGANCIVAGSSVFGAPE----------PAHVISLMRKSV 108
L I + + + S F + + PA ++LM K+
Sbjct: 1700 KLKTEKIFKEINEHST-----SYTFRSEKGLLSATQFTQPA--LTLMEKAA 1743
Score = 31.2 bits (70), Expect = 0.071
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 8/28 (28%)
Query: 38 FGGQ----KFMPEMMDKVRSLRNRYPSL 61
FGGQ + E+ R L Y L
Sbjct: 160 FGGQGNTDDYFEEL----RDLYQTYHVL 183
Score = 26.9 bits (59), Expect = 1.9
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 3/23 (13%)
Query: 71 PSTIAEAASAGANCIVAGSSVFG 93
S + A G +VA +FG
Sbjct: 142 NSALFRAVGEGNAQLVA---IFG 161
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 35.7 bits (83), Expect = 0.001
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 67 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
GG+ + AGA IV ++ A +P +R ++ A
Sbjct: 198 GGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTAA 242
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 35.3 bits (82), Expect = 0.001
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 67 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
GG+ E G + I S+V GA + +RK VE+
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEV 213
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM
barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP:
c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A*
3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Length = 227
Score = 35.3 bits (82), Expect = 0.001
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 45 PEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLM 104
+++ VR P + I GG+ A AGA+ + S++ A +P
Sbjct: 160 VSLIEAVRRQGISIPIVGI---GGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKF 216
Query: 105 RKSVEDAQK 113
R+ ++ +
Sbjct: 217 REEIQTYKT 225
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 67 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQK 113
GG+ P + + AGA+ I S +F + EP + +++ +
Sbjct: 171 GGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEMRY 217
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 33.8 bits (78), Expect = 0.006
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 67 GGLGPSTIAEAASAGANCIVAGSSVFGAPEPAH 99
GG+ + E G V ++ +
Sbjct: 151 GGINEDNLLEIKDFGFGGAVVLGDLWNKFDACL 183
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 32.5 bits (75), Expect = 0.016
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89
F PE + L+ ++PS+ +E GG+ + + + I G
Sbjct: 226 FKPEELHPTATVLKAQFPSVAVEASGGITLDNLPQFCGPHIDVISMGM 273
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG,
lyase, PSI-2, protein structure initiative; HET: MSE;
1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Length = 275
Score = 31.6 bits (71), Expect = 0.032
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 25 PVEMVLVMTVEPGFGGQKFMP----EMMDKVRSLRNRYPSLDI--EVDGGLGPSTIAEAA 78
P++ + + + G K+ P ++ R++ E GG+
Sbjct: 169 PIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIV 228
Query: 79 SAGANCIVAGSSVF 92
+ A
Sbjct: 229 RI---ALEANVEQV 239
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural
genomics, NPPSFA, national project on structural and
functional analyses; HET: C5P; 2.20A {Geobacillus
kaustophilus} PDB: 2yyt_A*
Length = 246
Score = 31.4 bits (72), Expect = 0.037
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQKNS 115
T +A + G++ IV G S+ A +P + ++ ++ S
Sbjct: 200 TPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWNGGERES 242
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis,
orotidine 5'-phosphate decarboxylas (ompdecase),
structural genomics; 1.60A {Pyrococcus horikoshii} SCOP:
c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Length = 208
Score = 31.1 bits (71), Expect = 0.049
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 68 GLGP--STIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
G+G +A AGA+ I+ G +++ AP P + +
Sbjct: 163 GIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix,
OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Length = 313
Score = 30.9 bits (70), Expect = 0.073
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 69 LGPSTIAEAASAGANCIV-----AGSSVFGAPEPAHVI 101
LG + GANC + + +V+ + P H +
Sbjct: 239 LGNIIVGSHVRIGANCWIDRDVDSNQTVYISEHPTHFV 276
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 30.5 bits (70), Expect = 0.094
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85
+ YP + +E G + +I A +G + I
Sbjct: 211 LSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAI 254
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 30.2 bits (69), Expect = 0.10
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85
F V+ +R P++ +E GGL T A A G + +
Sbjct: 223 FAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYL 266
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel,
protein-inhibitor complex, homodimer, lyase; HET: BMQ;
2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A*
1l2u_A
Length = 245
Score = 29.9 bits (68), Expect = 0.14
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDA 111
T +A SAG + +V G V + +PA + + S++ +
Sbjct: 206 TPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQRS 244
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET:
U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Length = 239
Score = 29.1 bits (66), Expect = 0.21
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
T A A G++ IV G S+ A +P +R E +
Sbjct: 199 TPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEGIK 238
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 29.4 bits (67), Expect = 0.23
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 43 FMPEMMDK-VRSLRNRYPSLD---IEVDGGLGPSTIAEAASAGANCIVAGS 89
F + + +SL+N++ +E GGL + E + S
Sbjct: 228 FKGDGLKMCAQSLKNKWNGKKHFLLECSGGLNLDNLEEYLCDDIDIYSTSS 278
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines,
nucleosides, nucleotides, lyase; 2.00A {Coxiella
burnetii}
Length = 239
Score = 28.7 bits (65), Expect = 0.31
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
T A AG++ +V G + + +P + + K ++
Sbjct: 201 TPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKDIK 237
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center
for structural genomics of infec diseases (csgid),
TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Length = 303
Score = 28.8 bits (65), Expect = 0.37
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVEDAQ 112
+A A ++ IV G ++ P V + +
Sbjct: 215 NLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHRKN 254
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529,
structural genomics, NEW YORK S genomics research
consortium; 2.19A {Lactobacillus acidophilus}
Length = 259
Score = 28.4 bits (64), Expect = 0.41
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKSVE 109
T A G++ IV G + A +P ++K
Sbjct: 201 TPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFN 237
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 28.4 bits (64), Expect = 0.44
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 51 VRSLRNRYPSLDIEV----DGGLGPSTIAEAASAGANCI-VAGSS 90
V SLR+R+P L + + G G + + A AGA+ + VA S
Sbjct: 296 VSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADS 340
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase;
1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Length = 205
Score = 28.2 bits (63), Expect = 0.44
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 41 QKFMPEMM---DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEP 97
K P + V++++ +P++ GG+ + E AG + GS++ P
Sbjct: 128 LKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALV-KGTP 186
Query: 98 AHVISLMRKSVE 109
V + VE
Sbjct: 187 DEVREKAKAFVE 198
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, P protein structure initiative;
2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 28.2 bits (63), Expect = 0.51
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 69 LGPSTIAEAASAGANCIV-----AGSSVFGAP 95
LG TI + A+ G N V AGS +
Sbjct: 267 LGRVTIGKGATVGGNIWVTENVPAGSRIVQRK 298
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics,
infectious diseases; 1.77A {Vibrio cholerae o1 biovar el
tor} PDB: 3uwq_A*
Length = 255
Score = 28.3 bits (64), Expect = 0.53
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
T A+A ++G++ +V G + A P V+ + S
Sbjct: 219 TPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSS 253
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase;
1.64A {Vibrionales bacterium swat-3}
Length = 232
Score = 27.9 bits (62), Expect = 0.61
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 37 GFGGQKFMPEMM----DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
G KF P V+SL Y + + GG+ PS I + G+ +
Sbjct: 147 GLTTLKFFPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMV 206
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 27.9 bits (63), Expect = 0.64
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 43 FMPEMM-DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89
PE + D R +++ P++ +EV GG+ ++ + I +
Sbjct: 222 LSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSR 269
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus} PDB: 2yw4_A
Length = 207
Score = 27.5 bits (61), Expect = 0.74
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 51 VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
+R+ +P + GG+ + A+ V GS +
Sbjct: 142 LRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLL 183
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 27.5 bits (61), Expect = 0.79
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 37 GFGGQKFMPEMM----DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
G KF P +++L Y L I GG+G I + + GS
Sbjct: 130 GISAVKFFPAEASGGVKMIKALLGPYAQLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFV 189
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A
{Escherichia coli} PDB: 3gnd_A* 3gkf_O
Length = 295
Score = 27.9 bits (61), Expect = 0.81
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK------SVEDAQK 113
+A GA+ + G ++F + P ++ ++ + + A +
Sbjct: 242 MCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYE 288
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A
{Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Length = 273
Score = 27.4 bits (60), Expect = 1.0
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEPAHVISLMRK------SVEDAQK 113
I +A AGA + G ++F + + + K VE+A K
Sbjct: 222 MIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHENADVEEALK 268
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown
function, aldolase superfamily, class I aldolase, KDPG
aldolase domain; 1.84A {Oleispira antarctica} PDB:
3vcr_A
Length = 217
Score = 27.1 bits (60), Expect = 1.4
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 5/92 (5%)
Query: 5 VALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMM----DKVRSLRNRYPS 60
A + + + G +++ + G K P +++ +P
Sbjct: 101 KAKQVKLDGQWQGVFLPGV-ATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPD 159
Query: 61 LDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
+ GG+ E GS +
Sbjct: 160 IQFCPTGGISKDNYKEYLGLPNVICAGGSWLT 191
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 26.7 bits (59), Expect = 1.7
Identities = 5/42 (11%), Positives = 18/42 (42%)
Query: 51 VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
++++ + + GG+ P+ + + + + GS +
Sbjct: 147 LQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLV 188
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 26.7 bits (59), Expect = 1.8
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 66 DGGLGPS-TIAEAASAGANCIVAGSSVFGAPE-PAHVI 101
DG + S + +A + GA+ +V GS + A E
Sbjct: 283 DGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGY 320
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.00A {Thermotoga maritima} SCOP:
c.1.2.3
Length = 213
Score = 26.4 bits (59), Expect = 1.9
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 76 EAASAGANCIVAGSSVFGAPEPAHVISLMRKS 107
E AN V G ++ + P I +++
Sbjct: 180 EEMKGIANFAVLGREIYLSENPREKIKRIKEM 211
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A
{Bacillus subtilis} SCOP: c.1.4.1
Length = 240
Score = 26.6 bits (58), Expect = 2.0
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA 98
G E + K +++ + + GG+ + A+ + A+ IV G++V+ + A
Sbjct: 164 SGVLGDIEAVKKTKAVLE---TSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRA 220
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 26.6 bits (58), Expect = 2.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 73 TIAEAASAGANCIVAGSSVFGAPEP 97
T+ + S G++ I+ G +F
Sbjct: 219 TVDDVVSTGSDIIIVGRGLFAKGRD 243
>1n4q_B Geranyltransferase type-I beta subunit; protein
geranylgeranyltransferase type-I, ggtase; HET: MGM GER;
2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B*
1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B*
1tnz_B*
Length = 377
Score = 26.3 bits (57), Expect = 2.5
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 66 DGGLGPSTIAEAASAGANCIVAGSSVFGAPEPA 98
D GL E+ C +A + G E
Sbjct: 207 DNGLAQGAGLESHGGSTFCGIASLCLMGKLEEV 239
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI2, structural genomics; 1.87A
{Rhodopseudomonas palustris}
Length = 313
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 48 MDKVRSLRNRYP---SLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAPE 96
++K+ +LR + + G G + GA+ + G + P+
Sbjct: 176 LEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEMERGADGAMTG---YCFPD 224
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal;
HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Length = 212
Score = 26.0 bits (57), Expect = 3.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 67 GGLGPSTIAEAASAGANCIVAGSSVF 92
GG+ P +A+ AG GS ++
Sbjct: 155 GGVTPENLAQWIDAGCAGAGLGSDLY 180
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces
ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Length = 286
Score = 26.0 bits (56), Expect = 3.8
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGL-GPSTIAEAASAGANCIVAGSSV 91
+ PE++ R P + V G + + E +GA+ + ++
Sbjct: 208 RNEHVPPEVVRHFRKGLG--PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGAL 259
>2o0m_A Transcriptional regulator, SORC family; structural genomics,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Enterococcus
faecalis} SCOP: c.124.1.8
Length = 345
Score = 25.6 bits (56), Expect = 3.8
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 41 QKFMPEMMDKVRSLRNRYPSL-DIEVDGGLGPSTIAEAA 78
+ P+M+D L+ R+ L +I +G +++E
Sbjct: 9 EAVAPDMLDV---LQERFQILRNIYWMQPIGRRSLSETM 44
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 25.7 bits (57), Expect = 3.9
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 44 MPEMMDKVRSL--RNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVFGAP 95
++ +VR + I V GGL +T+ + AGA G+S+ A
Sbjct: 252 FEALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSAK 305
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 25.7 bits (57), Expect = 4.3
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 49 DKVRSLRNRYPSLDIEVDGGLGPSTIAEA 77
D V L+ +P L +GG+ ++ EA
Sbjct: 186 DWVHRLKGDFPQLTFVTNGGI--RSLEEA 212
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 25.5 bits (57), Expect = 4.5
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89
F E +D V R + +EV G + ++I A G + I G+
Sbjct: 227 FSGEDIDIAVSIARGKVA---LEVSGNIDRNSIVAIAKTGVDFISVGA 271
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 25.6 bits (57), Expect = 4.6
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89
+ K V + + +EV G + + A G + I G
Sbjct: 236 MSISEIKKAVDIVNGKSV---LEVSGCVNIRNVRNIALTGVDYISIGC 280
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 25.1 bits (56), Expect = 5.4
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGS 89
F E + + VR + R P +E G + AA AG + + G+
Sbjct: 225 FPLEALREAVRRVGGRVP---LEASGNMTLERAKAAAEAGVDYVSVGA 269
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain,
orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 3mw7_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Length = 312
Score = 25.4 bits (55), Expect = 5.6
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 73 TIAEAAS-AGANCIVAGSSVFGAPEPAHVISLMRK 106
+ E G++ I+ G + A + + RK
Sbjct: 266 SPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRK 300
>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
unusual catalysis, disease mutati glycosyltransferase,
lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo
sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A*
3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A*
3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A*
3l0n_A* ...
Length = 260
Score = 25.3 bits (55), Expect = 6.0
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 73 TIAEA-ASAGANCIVAGSSVFGAPEPAHVISLMRK 106
+ E G++ I+ G + A + + RK
Sbjct: 214 SPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRK 248
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 25.3 bits (56), Expect = 6.5
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 51 VRSLRNRY-PSLDIEVD----GGLGPSTIAEAASAGANCI-VAGSS 90
++++++ Y I + G+ ++ +A AG + + A SS
Sbjct: 210 IKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS 255
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel,
glycolytic, archaeal, catalytic mechanism, reaction
intermediate, lyase; HET: FBP; 1.85A {Thermoproteus
tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A
1ok6_A
Length = 263
Score = 25.2 bits (54), Expect = 6.6
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 74 IAEAASAGANCIVAGSSVFGAPEPAHVISLMR------KSVEDAQK 113
+ AGA I G +V+ + + K + +
Sbjct: 217 VEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGGKKLAEPLN 262
>2gx8_A NIF3-related protein; structural genomics, unknown function,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: EPE; 2.20A {Bacillus
cereus} SCOP: c.135.1.1
Length = 397
Score = 25.0 bits (54), Expect = 6.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 71 PSTIAEAASAGANCIVA 87
+ EA GAN I+A
Sbjct: 75 EEVVDEAIQLGANVIIA 91
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 25.1 bits (55), Expect = 7.7
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 31 VMTVEPGFGGQKFMPEMMDKVRSLRNRYPSLDIEVD 66
V+TVEPG F+ ++D+ + R + EV
Sbjct: 409 VLTVEPGI---YFIDHLLDEALADPARASFFNREVL 441
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A
{Candidatus cloacamonas acidaminovoransorganism_taxid}
PDB: 2y7d_A 2y7f_A* 2y7g_A
Length = 282
Score = 24.6 bits (53), Expect = 8.3
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 18/57 (31%)
Query: 44 MPEMMDKV---------RSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSV 91
+ + + R P+L P T E A C AG+ V
Sbjct: 3 HHHHHEPLILTAAITGAETTRADQPNL---------PITPEEQAKEAKACFEAGARV 50
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown
function; 2.60A {Thermus thermophilus}
Length = 242
Score = 24.5 bits (54), Expect = 8.8
Identities = 2/19 (10%), Positives = 7/19 (36%)
Query: 69 LGPSTIAEAASAGANCIVA 87
G + +A + ++
Sbjct: 45 AGEAIFRKALEEEVDFLIV 63
>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of
trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6
Length = 289
Score = 24.6 bits (54), Expect = 9.5
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 69 LGPSTIAEAASAGANCIV-----AGSSVFGAPEPAHVIS 102
LG + A GA +V ++ G PA ++
Sbjct: 225 LGNIEVGRGAKIGAGSVVLQPVPPHTTAAGV--PARIVG 261
>3g74_A Protein of unknown function; APC21008.1, structural GE PSI-2,
protein structure initiative, midwest center for STR
genomics; 2.43A {Eubacterium ventriosum atcc 27560}
Length = 100
Score = 24.1 bits (52), Expect = 9.5
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 39 GGQKFMPEMMDKVRSLRNRYPSLDIEVDGGLGPSTIAE 76
G ++++ +M + + ++DI+ G + E
Sbjct: 54 GKKRYIVSIMKIIEMADQTFQNVDIQNIG--ETECVVE 89
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate,
beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Length = 225
Score = 24.4 bits (53), Expect = 9.6
Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 37 GFGGQKFMPEMM----DKVRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCIVAGSSVF 92
G+ K P + +++ + + GG+ P+ + + V + +
Sbjct: 139 GYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMALPNVMCVGTTWML 198
Query: 93 GA 94
+
Sbjct: 199 DS 200
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 24.5 bits (54), Expect = 9.8
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 66 DGGLGPS-TIAEAASAGANCIVAGS 89
DGG+ S I +A + GA+ ++ GS
Sbjct: 213 DGGIRYSGDIGKALAVGASSVMIGS 237
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 24.4 bits (54), Expect = 9.8
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 43 FMPEMMDK-VRSLRNRYPSLDIEVDGGLGPSTIAEAASAGANCI 85
F + M + V+ + + +EV G + T+ E A G + I
Sbjct: 237 FNTDQMREAVKRVNGQAR---LEVSGNVTAETLREFAETGVDFI 277
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 24.4 bits (54), Expect = 9.9
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 66 DGGLGPS-TIAEAASAGANCIVAGS 89
DGG+ + +A + GA+ ++ GS
Sbjct: 364 DGGIQTVGHVVKALALGASTVMMGS 388
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.374
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,747,078
Number of extensions: 101782
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 116
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.2 bits)