BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033599
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5H1V2|RF3_XANOR Peptide chain release factor 3 OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=prfC PE=3 SV=1
Length = 534
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + IS H Y+
Sbjct: 171 IGMGQRLKGVVHLISGEVHLYE 192
>sp|B2SSM9|RF3_XANOP Peptide chain release factor 3 OS=Xanthomonas oryzae pv. oryzae
(strain PXO99A) GN=prfC PE=3 SV=1
Length = 534
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + IS H Y+
Sbjct: 171 IGMGQRLKGVVHLISGEVHLYE 192
>sp|Q2P4Q8|RF3_XANOM Peptide chain release factor 3 OS=Xanthomonas oryzae pv. oryzae
(strain MAFF 311018) GN=prfC PE=3 SV=1
Length = 534
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + IS H Y+
Sbjct: 171 IGMGQRLKGVVHLISGEVHLYE 192
>sp|Q3BQQ3|RF3_XANC5 Peptide chain release factor 3 OS=Xanthomonas campestris pv.
vesicatoria (strain 85-10) GN=prfC PE=3 SV=1
Length = 534
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + IS H Y+
Sbjct: 171 IGMGQRLKGVVHLISGEVHLYE 192
>sp|Q8PI56|RF3_XANAC Peptide chain release factor 3 OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=prfC PE=3 SV=1
Length = 534
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + IS H Y+
Sbjct: 171 IGMGQRLKGVVHLISGEVHLYE 192
>sp|Q8P6V6|RF3_XANCP Peptide chain release factor 3 OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=prfC PE=3 SV=1
Length = 534
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + I+ H Y+
Sbjct: 171 IGMGQRLKGVVHLITGEVHLYE 192
>sp|B0RQB0|RF3_XANCB Peptide chain release factor 3 OS=Xanthomonas campestris pv.
campestris (strain B100) GN=prfC PE=3 SV=1
Length = 534
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + I+ H Y+
Sbjct: 171 IGMGQRLKGVVHLITGEVHLYE 192
>sp|Q4UXA5|RF3_XANC8 Peptide chain release factor 3 OS=Xanthomonas campestris pv.
campestris (strain 8004) GN=prfC PE=3 SV=1
Length = 534
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 9 GAYQKTQMLKVVCRKKER---------DRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQ 59
G ++T L VCR ++ DR+ KN I VE LGI+C P
Sbjct: 116 GVEERTIKLMEVCRLRDTPIMTFINKLDREGKNPIDLLDEVETV-----LGIQCAPVTWP 170
Query: 60 CGESVTIEGQAYTISAVTHRYQ 81
G ++G + I+ H Y+
Sbjct: 171 IGMGQRLKGVVHLITGEVHLYE 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,328,976
Number of Sequences: 539616
Number of extensions: 1632029
Number of successful extensions: 2930
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2929
Number of HSP's gapped (non-prelim): 10
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)