Query 033599
Match_columns 115
No_of_seqs 52 out of 54
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 06:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pp6_A Gifsy-2 prophage ATP-bi 87.1 1.4 4.8E-05 31.3 5.6 51 35-89 41-91 (102)
2 2f9h_A PTS system, IIA compone 77.8 2.3 7.9E-05 30.7 3.8 21 56-76 53-73 (129)
3 1k0h_A Gpfii; twisted beta-san 63.7 2.4 8.1E-05 29.8 1.1 23 53-76 71-93 (117)
4 3lae_A UPF0053 protein HI0107; 63.7 7.2 0.00025 24.7 3.3 25 54-78 46-70 (81)
5 2pls_A CBS domain protein; APC 62.2 6.8 0.00023 24.9 3.0 26 53-78 49-74 (86)
6 2p4p_A Hypothetical protein HD 59.9 8 0.00027 24.6 3.1 26 53-78 47-72 (86)
7 3llb_A Uncharacterized protein 57.7 8.6 0.00029 24.4 2.9 27 53-79 45-71 (83)
8 2o3g_A Putative protein; APC85 56.9 9.4 0.00032 24.6 3.0 26 53-78 55-80 (92)
9 2pli_A Uncharacterized protein 56.9 8.8 0.0003 24.8 2.9 26 53-78 54-79 (91)
10 2oai_A Hemolysin; PFAM03471, x 56.3 9.6 0.00033 24.8 3.0 26 53-78 57-82 (94)
11 2nqw_A CBS domain protein; PFA 55.7 9.7 0.00033 24.6 3.0 25 53-77 56-80 (93)
12 3a5z_B EF-P, elongation factor 50.2 23 0.0008 26.6 4.7 26 56-81 10-35 (191)
13 3ded_A Probable hemolysin; str 48.5 20 0.00067 24.4 3.7 25 54-78 77-101 (113)
14 2p13_A CBS domain; alpha-beta 46.8 9.1 0.00031 24.6 1.7 26 53-78 53-78 (90)
15 3cdd_A Prophage MUSO2, 43 kDa 45.6 49 0.0017 25.6 6.0 43 57-104 298-346 (361)
16 1bkb_A Translation initiation 45.2 29 0.00099 24.4 4.3 24 57-80 13-36 (136)
17 2eif_A IF-5A, protein (eukaryo 45.2 26 0.00091 24.7 4.1 23 57-79 15-37 (136)
18 1uuz_A IVY, inhibitor of verte 44.8 19 0.00064 26.4 3.3 22 57-78 39-60 (137)
19 2p5z_X Type VI secretion syste 44.0 22 0.00074 28.8 3.9 32 56-88 320-359 (491)
20 2r2z_A Hemolysin; APC85144, en 43.7 13 0.00046 23.8 2.2 26 53-78 52-79 (93)
21 1iz6_A Initiation factor 5A; S 42.2 31 0.0011 24.4 4.1 24 57-80 11-34 (138)
22 3cpf_A Eukaryotic translation 39.2 41 0.0014 23.8 4.3 23 57-79 11-33 (138)
23 2rk5_A Putative hemolysin; str 37.5 21 0.00072 22.7 2.3 25 53-77 44-74 (87)
24 3lvl_A NIFU-like protein; prot 37.0 18 0.00061 25.3 2.1 11 56-66 34-44 (129)
25 1xs0_A Inhibitor of vertebrate 36.6 18 0.0006 26.5 2.0 21 58-78 38-58 (136)
26 3oyy_A EF-P, elongation factor 35.4 41 0.0014 25.3 4.0 25 57-81 9-33 (191)
27 3tre_A EF-P, elongation factor 34.6 49 0.0017 24.8 4.3 23 57-79 11-33 (191)
28 1ueb_A EF-P, TT0860, elongatio 32.6 49 0.0017 24.6 4.0 24 58-81 7-30 (184)
29 3er0_A Eukaryotic translation 31.4 58 0.002 24.1 4.2 29 55-86 33-61 (167)
30 3d37_A Tail protein, 43 kDa; s 30.4 1E+02 0.0036 24.2 5.8 44 57-104 294-343 (381)
31 3tiw_A Transitional endoplasmi 27.9 40 0.0014 25.0 2.8 37 34-70 21-63 (187)
32 1yby_A Translation elongation 27.8 72 0.0025 24.5 4.3 26 55-80 34-59 (215)
33 1x6o_A Eukaryotic initiation f 26.4 75 0.0026 23.6 4.1 24 56-79 34-57 (174)
34 3hks_A EIF-5A-2, eukaryotic tr 26.1 85 0.0029 23.2 4.3 27 57-86 33-59 (167)
35 3bb6_A Uncharacterized protein 24.9 46 0.0016 23.9 2.5 54 1-82 1-54 (127)
36 3udc_A Small-conductance mecha 24.5 56 0.0019 24.9 3.1 28 54-81 125-152 (285)
37 1te7_A Hypothetical UPF0267 pr 24.1 79 0.0027 20.9 3.5 23 55-77 30-56 (103)
38 3q3y_A HEVB EV93 3C protease; 23.2 1.1E+02 0.0038 23.3 4.5 31 52-85 37-67 (191)
39 3qwz_A Transitional endoplasmi 22.8 57 0.0019 24.7 2.8 38 33-70 23-66 (211)
40 1wru_A 43 kDa tail protein; ba 21.6 1.9E+02 0.0065 22.5 5.7 42 57-102 291-339 (379)
41 2vv5_A MSCS, small-conductance 21.0 61 0.0021 24.7 2.7 29 53-81 125-153 (286)
No 1
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=87.08 E-value=1.4 Score=31.33 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=35.3
Q ss_pred cceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEe
Q 033599 35 HPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEP 89 (115)
Q Consensus 35 lP~EV~~~tpp~r~LG~~~Lp~~pqpG~~leleg~sY~VlerrHRYqLr~GRY~l 89 (115)
.|-|.--++++.++|=.+.=.--|+-|+-|..+|+.|+|. ||++..|+.++
T Consensus 41 ~~~emg~lsG~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vt----r~~~~ngk~~i 91 (102)
T 2pp6_A 41 FLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT----RIRRFNGKPQL 91 (102)
T ss_dssp GTC--------CEEEEECCSSCCCCTTCEEEETTEEEEEE----EEEEETTEEEE
T ss_pred hHHHhCCccCCceEEEEecCCcccCCCCEEEEcCcEEEEE----EEEEECCcEEE
Confidence 4445555688888888875555599999999999999995 68888999875
No 2
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=77.79 E-value=2.3 Score=30.68 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCCCCCCeEEEcCeEEEEEEE
Q 033599 56 PNLQCGESVTIEGQAYTISAV 76 (115)
Q Consensus 56 ~~pqpG~~leleg~sY~Vler 76 (115)
..+++|+++.++++.|.|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 689999999999999999876
No 3
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=63.73 E-value=2.4 Score=29.78 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=18.7
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAV 76 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~Vler 76 (115)
.++ .|++|+.|+++|++|.|..+
T Consensus 71 D~~-~~~~gD~v~i~g~~y~V~~v 93 (117)
T 1k0h_A 71 EVR-QLRRGDTLTIGEENFWVDRV 93 (117)
T ss_dssp STT-TCCSSCEEEETTTCEEBCCC
T ss_pred ccC-CCCCCCEEEECCeEEEEeee
Confidence 344 36999999999999999764
No 4
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=63.66 E-value=7.2 Score=24.67 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.6
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 54 FPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 54 Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
|..-|..|+.++++|-.|.|.+...
T Consensus 46 lg~iP~~Gd~v~~~~~~f~V~~~~~ 70 (81)
T 3lae_A 46 LEEIPDEGTICEIDGLLITILEVGD 70 (81)
T ss_dssp CSSCCCTTCEEEETTEEEEEEEEET
T ss_pred hCCCCCCCCEEEECCEEEEEEEeeC
Confidence 4567999999999999999998754
No 5
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=62.24 E-value=6.8 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=22.3
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
.|...|..|+.|+++|-.|.|.+...
T Consensus 49 ~lg~iP~~Gd~v~~~~~~f~V~~~~~ 74 (86)
T 2pls_A 49 LLGRLPQTGDITFWENWRLEVIDMDS 74 (86)
T ss_dssp HHTSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEECCEEEEEEEeeC
Confidence 35677999999999999999999763
No 6
>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4
Probab=59.93 E-value=8 Score=24.65 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=22.3
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
.|...|+.|+.|+++|-.|.|.+...
T Consensus 47 ~lg~iP~~Gd~v~~~~~~f~V~~~~~ 72 (86)
T 2p4p_A 47 MLRXIPXXTDFVLYDXYXFEIIDTEN 72 (86)
T ss_dssp HHCSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCcEEEEeeEEEEEEEccC
Confidence 35677999999999999999998763
No 7
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=57.72 E-value=8.6 Score=24.43 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.5
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTHR 79 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrHR 79 (115)
.|..-|+.|+.|+++|-.|.|.+...|
T Consensus 45 ~lg~iP~~Gd~v~~~~~~f~V~~~~~~ 71 (83)
T 3llb_A 45 AFGHLPKRNEVVELGEFRFRVLNADSR 71 (83)
T ss_dssp HHSSCCCTTCEEEETTEEEEEEEECSS
T ss_pred HhCcCCCCCCEEEECCEEEEEEEeeCC
Confidence 355679999999999999999987543
No 8
>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=56.93 E-value=9.4 Score=24.60 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=22.1
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
.|...|..|+.|+++|-.|.|.+...
T Consensus 55 ~lg~iP~~Gd~v~~~~~~f~V~~~~~ 80 (92)
T 2o3g_A 55 ELQTIPDVGDFADFHGWRFEVVEKEG 80 (92)
T ss_dssp HHTSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEECCEEEEEEEeeC
Confidence 35567999999999999999998763
No 9
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4
Probab=56.86 E-value=8.8 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.1
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
.|...|..|+.|+++|-.|.|.+...
T Consensus 54 ~lg~iP~~Ge~v~~~~~~f~V~~~d~ 79 (91)
T 2pli_A 54 ELGHLPVRGEKVLIGGLQFTVARADN 79 (91)
T ss_dssp HHSSCCCTTCEEEETTEEEEEEEECS
T ss_pred HhCCCCCCCCEEEECCEEEEEEEEeC
Confidence 35667999999999999999998753
No 10
>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=56.31 E-value=9.6 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.4
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
.|...|+.|+.|+++|-.|.|.+...
T Consensus 57 ~lg~iP~~Gd~v~~~~~~f~V~~~d~ 82 (94)
T 2oai_A 57 YFGRIPHVGEYFDWAGWRIEIVDLDG 82 (94)
T ss_dssp HHSSCCCTTCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEECCEEEEEEEEcC
Confidence 35677999999999999999998764
No 11
>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4
Probab=55.72 E-value=9.7 Score=24.59 Aligned_cols=25 Identities=8% Similarity=0.147 Sum_probs=21.7
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVT 77 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~Vlerr 77 (115)
.|...|+.|+.|+++|-.|.|.+..
T Consensus 56 ~lg~iP~~Gd~v~~~~~~f~V~~~d 80 (93)
T 2nqw_A 56 IKQELPHVGDTAVYEPFRFQVTQMD 80 (93)
T ss_dssp HHCSCCCTTCEEEETTEEEEEEEEC
T ss_pred HhCcCCCCCCEEEECCEEEEEEEee
Confidence 3566799999999999999999875
No 12
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=50.24 E-value=23 Score=26.63 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=22.6
Q ss_pred CCCCCCCeEEEcCeEEEEEEEEEEEE
Q 033599 56 PNLQCGESVTIEGQAYTISAVTHRYQ 81 (115)
Q Consensus 56 ~~pqpG~~leleg~sY~VlerrHRYq 81 (115)
....+|..|+++|+-|.|.+..|.=.
T Consensus 10 ~dlk~G~~I~~dg~p~~Vve~~~~Kp 35 (191)
T 3a5z_B 10 NDFRAGLKIMLDGEPYAVEASEFVKP 35 (191)
T ss_dssp TTCCTTCEEEETTEEEEEEEEEEECC
T ss_pred HHCCCCCEEEECCEEEEEEEEEEEcC
Confidence 35789999999999999999999643
No 13
>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=48.45 E-value=20 Score=24.40 Aligned_cols=25 Identities=4% Similarity=0.133 Sum_probs=21.2
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 54 FPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 54 Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
|...|+.|+.|+++|-.|.|++..-
T Consensus 77 lg~iP~~Gd~v~~~g~~f~V~~~d~ 101 (113)
T 3ded_A 77 LGRVPSVTDRFEWNGFSFEVVDMDR 101 (113)
T ss_dssp HCSSCCTTCEEEETTEEEEEEEEET
T ss_pred hCCCCCCCCEEEECCEEEEEEEEeC
Confidence 3456999999999999999998754
No 14
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=46.79 E-value=9.1 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.9
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrH 78 (115)
.|...|+.|+.|+++|-.|.|.+...
T Consensus 53 ~lg~iP~~Gd~v~~~~~~f~V~~~d~ 78 (90)
T 2p13_A 53 QFGYIPAAGEQITVDGLIFEIVSVNK 78 (90)
T ss_dssp HHSSCCCTTCEEEETTEEEEECCBCS
T ss_pred HhCCCCCCCCEEEECCEEEEEEEEeC
Confidence 35567999999999999999998653
No 15
>3cdd_A Prophage MUSO2, 43 kDa tail protein; shewanella oneidensis MR-1, structural genomics, PSI- protein structure initiative; HET: MSE; 2.10A {Shewanella oneidensis} SCOP: b.106.1.1 b.106.1.1
Probab=45.61 E-value=49 Score=25.56 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=31.5
Q ss_pred CCCCCCeEEEcC------eEEEEEEEEEEEEEecceEEecceeEEEeecchhhH
Q 033599 57 NLQCGESVTIEG------QAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYIL 104 (115)
Q Consensus 57 ~pqpG~~leleg------~sY~VlerrHRYqLr~GRY~l~~i~L~VQ~~~Ry~~ 104 (115)
..+||..|.+.| ..|+|.+++|++. .|.|. ..|.+....-|+.
T Consensus 298 l~~pg~~V~v~g~~~~~dg~~~I~~v~h~~~--~~G~~---T~l~l~~~~~~~~ 346 (361)
T 3cdd_A 298 LWNINTLVPVIDEIMGLDEEMLIASILFSED--DAGRL---AVISVVRPDAMDI 346 (361)
T ss_dssp BCCSSCEEEEEETTTTEEEEEEEEEEEEEEE--TTEEE---EEEEEECTTTTCC
T ss_pred ccCCCCEEEEecCCCCcCceEEEEEEEEEec--CCccE---EEEEEeCccccCC
Confidence 358999988754 4799999999996 55676 5577766655543
No 16
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=45.17 E-value=29 Score=24.39 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTHRY 80 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHRY 80 (115)
...+|..|+++|+-|.|.+..|.=
T Consensus 13 ~lrkG~~i~~~g~p~~Vve~~~~K 36 (136)
T 1bkb_A 13 ELKEGSYVVIDGEPCRVVEIEKSK 36 (136)
T ss_dssp GCCTTCEEEETTEEEEEEEEEEEC
T ss_pred HccCCCEEEECCEEEEEEEEEEec
Confidence 467899999999999999998764
No 17
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=45.16 E-value=26 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTHR 79 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHR 79 (115)
...+|..|+++|+-|.|.+..|.
T Consensus 15 ~lr~G~~I~~~g~p~~V~e~~~~ 37 (136)
T 2eif_A 15 SLKVGQYVMIDGVPCEIVDISVS 37 (136)
T ss_dssp GCCTTSEEEETTEEEEEEEEEEC
T ss_pred HCcCCCEEEECCEEEEEEEEEee
Confidence 46899999999999999999873
No 18
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=44.81 E-value=19 Score=26.39 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.4
Q ss_pred CCCCCCeEEEcCeEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrH 78 (115)
+--|+++|+++|+.|+|.....
T Consensus 39 tssP~~~V~~~G~~Ylvg~~Ck 60 (137)
T 1uuz_A 39 PSSPSTSLSLEGQPYVLANSCK 60 (137)
T ss_dssp CBCCCEEEEETTEEEEEEEEEC
T ss_pred CCCCCeeEEECCEEEEEEcccC
Confidence 3457999999999999998764
No 19
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=44.04 E-value=22 Score=28.83 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=25.2
Q ss_pred CCCCCCCeEEEcC-e-------EEEEEEEEEEEEEecceEE
Q 033599 56 PNLQCGESVTIEG-Q-------AYTISAVTHRYQLRKGKYE 88 (115)
Q Consensus 56 ~~pqpG~~leleg-~-------sY~VlerrHRYqLr~GRY~ 88 (115)
....||.+|++.| . .|+|.+++|... +.|.|+
T Consensus 320 ~~L~~G~~f~L~g~~~~~~~~~~~lIt~v~H~~~-~~~~y~ 359 (491)
T 2p5z_X 320 SLLMPGLEIKVQGDDAPAVFRKGVLITGVTTSAA-RDRSYE 359 (491)
T ss_dssp SSCCTTEEEEECCSSSCHHHHHCEEEEEEEEEEE-TTTCCE
T ss_pred ccccCCcEEeecCCCCChhhCCcEEEEEEEEEEe-cCceEE
Confidence 5578999999999 3 799999999874 235554
No 20
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=43.69 E-value=13 Score=23.75 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.0
Q ss_pred EcCCCCCCCCeEEE--cCeEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTI--EGQAYTISAVTH 78 (115)
Q Consensus 53 ~Lp~~pqpG~~lel--eg~sY~VlerrH 78 (115)
.|...|+.|+.|++ +|-.|.|.+...
T Consensus 52 ~lg~iP~~Gd~v~~~~~~~~f~V~~~~~ 79 (93)
T 2r2z_A 52 ALGTIPDEGEKPSFEVGNIKLTAEEMEG 79 (93)
T ss_dssp HHSSCCCTTCCCEEEETTEEEEEEEEET
T ss_pred HhCCCCCCCCEEEEecCCEEEEEEEeeC
Confidence 45677999999988 999999998763
No 21
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=42.20 E-value=31 Score=24.44 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTHRY 80 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHRY 80 (115)
...+|..|+++|+-|.|.+..|.=
T Consensus 11 ~lkkG~~i~~~g~p~~Vve~~~~K 34 (138)
T 1iz6_A 11 KLKPGRYIIIDDEPCRIVNITVSS 34 (138)
T ss_dssp GCCTTSEEEETTEEEEEEEEEECC
T ss_pred HccCCCEEEECCEEEEEEEEEeec
Confidence 467999999999999999998863
No 22
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=39.16 E-value=41 Score=23.76 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.1
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTHR 79 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHR 79 (115)
...+|.+|+++|+-|.|.+..|.
T Consensus 11 ~lrkG~~i~~~g~p~~Vve~~~~ 33 (138)
T 3cpf_A 11 ALRKNGFVVLKGRPCKIVEMSTS 33 (138)
T ss_dssp GCCTTSEEEETTEEEEEEEEEEE
T ss_pred HCcCCCEEEECCEEEEEEEEEec
Confidence 36789999999999999999987
No 23
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=37.48 E-value=21 Score=22.66 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=20.8
Q ss_pred EcCCCCCCCC--eEEEcC----eEEEEEEEE
Q 033599 53 CFPPNLQCGE--SVTIEG----QAYTISAVT 77 (115)
Q Consensus 53 ~Lp~~pqpG~--~leleg----~sY~Vlerr 77 (115)
.|...|..|+ .|+++| -.|.|.+..
T Consensus 44 ~lg~iP~~Gd~~~v~~~~~~~~~~f~V~~~~ 74 (87)
T 2rk5_A 44 GVGTIPSQEEKEHFEVESNGKHLELINDKVK 74 (87)
T ss_dssp HHCSCCCSSSCCEEEEEETTEEEEEEEEEEE
T ss_pred HhCcCCCCCCcEEEEECCceEEEEEEEEEEe
Confidence 3566799999 999998 789988876
No 24
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=36.99 E-value=18 Score=25.28 Aligned_cols=11 Identities=18% Similarity=0.604 Sum_probs=9.1
Q ss_pred CCCCCCCeEEE
Q 033599 56 PNLQCGESVTI 66 (115)
Q Consensus 56 ~~pqpG~~lel 66 (115)
.||.||+.|++
T Consensus 34 ~np~CGD~i~l 44 (129)
T 3lvl_A 34 GAPACGDVMKL 44 (129)
T ss_dssp ECTTTCCEEEE
T ss_pred cCCCCCCEEEE
Confidence 38999998765
No 25
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=36.61 E-value=18 Score=26.53 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=17.6
Q ss_pred CCCCCeEEEcCeEEEEEEEEE
Q 033599 58 LQCGESVTIEGQAYTISAVTH 78 (115)
Q Consensus 58 pqpG~~leleg~sY~VlerrH 78 (115)
--|+++|+++|+.|+|.....
T Consensus 38 ssP~~~V~~~G~~Ylvg~~Ck 58 (136)
T 1xs0_A 38 YTPAQTVTLGDETYQVMSACK 58 (136)
T ss_dssp EEEEEEEEEETEEEEEEEEEC
T ss_pred CCCCeeEEECCEEEEEEcccC
Confidence 346899999999999998753
No 26
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=35.39 E-value=41 Score=25.27 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTHRYQ 81 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHRYq 81 (115)
...+|..|+++|+-|.|.+..|.=.
T Consensus 9 dlk~G~~I~~dg~p~~Vve~~~~Kp 33 (191)
T 3oyy_A 9 EFRAGQVANINGAPWVIQKAEFNKS 33 (191)
T ss_dssp GCCTTCEEEETTEEEEEEEEEEECC
T ss_pred hCCCCCEEEECCEEEEEEEEEeeeC
Confidence 3678999999999999999998643
No 27
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=34.63 E-value=49 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.9
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEE
Q 033599 57 NLQCGESVTIEGQAYTISAVTHR 79 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHR 79 (115)
...+|..|+++|+-|.|.+..|.
T Consensus 11 dlkkG~~I~~dG~p~~Vve~~~~ 33 (191)
T 3tre_A 11 EFRGGLKVMVDGDPCSIIDNEFV 33 (191)
T ss_dssp GCCTTCEEEETTEEEEEEEEEEE
T ss_pred HCCCCCEEEECCEEEEEEEEEEe
Confidence 46789999999999999999995
No 28
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=32.56 E-value=49 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCCCeEEEcCeEEEEEEEEEEEE
Q 033599 58 LQCGESVTIEGQAYTISAVTHRYQ 81 (115)
Q Consensus 58 pqpG~~leleg~sY~VlerrHRYq 81 (115)
..+|.+|+++|+-|.|.+..|.=.
T Consensus 7 lkkG~~i~~dg~p~~Vve~~~~Kp 30 (184)
T 1ueb_A 7 LRPGTKVKMDGGLWECVEYQHQKL 30 (184)
T ss_dssp CCTTCEEEETTEEEEEEEEEEEEE
T ss_pred cCCCCEEEECCEEEEEEEEEEeeC
Confidence 578999999999999999999744
No 29
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=31.37 E-value=58 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCCCCCCeEEEcCeEEEEEEEEEEEEEecce
Q 033599 55 PPNLQCGESVTIEGQAYTISAVTHRYQLRKGK 86 (115)
Q Consensus 55 p~~pqpG~~leleg~sY~VlerrHRYqLr~GR 86 (115)
-....+|.+|+++|+-|.|.+..|. +-||
T Consensus 33 a~dlrkG~~I~idG~p~~Vve~~~~---KpGK 61 (167)
T 3er0_A 33 CSALRKNGFVVIKSRPCKIVDMSTS---KTGK 61 (167)
T ss_dssp TTTCCTTCEEEETTEEEEEEEEEEE---CCSS
T ss_pred HHHccCCCEEEECCEEEEEEEEEEe---CCCC
Confidence 3458899999999999999999886 4555
No 30
>3d37_A Tail protein, 43 kDa; structural genomics, PSI, MCSG, protein struct initiative, midwest center for structural genomics, unknown; 2.10A {Neisseria meningitidis MC58} SCOP: b.106.1.1 b.106.1.1
Probab=30.41 E-value=1e+02 Score=24.20 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=31.7
Q ss_pred CCCCCCeEEEcC------eEEEEEEEEEEEEEecceEEecceeEEEeecchhhH
Q 033599 57 NLQCGESVTIEG------QAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYIL 104 (115)
Q Consensus 57 ~pqpG~~leleg------~sY~VlerrHRYqLr~GRY~l~~i~L~VQ~~~Ry~~ 104 (115)
..+||..|.+.| ..|+|.+++|.+.- .|.|. -.|.+....-|+.
T Consensus 294 ~~~pg~~V~v~g~~~~~dg~~lI~~vtH~~~~-~~G~~---T~l~l~~~~~~~~ 343 (381)
T 3d37_A 294 LWQPGLRVHVIDDEHGIDAVFFLMGRRFMLSR-MDGTQ---TELRLKEDGIWTP 343 (381)
T ss_dssp BCCTTCEEEEEETTTTEEEEEEEEEEEEEEET-TTEEE---EEEEEEETTCSST
T ss_pred ccCCCCEEEEecCCCCcccEEEEEEEEEEEcC-CCCeE---EEEEEeCCccccC
Confidence 458999987754 47999999999842 46676 4577776665553
No 31
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=27.92 E-value=40 Score=25.03 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=27.0
Q ss_pred ccceEEEEeCCCCceeeeEEcCCC------CCCCCeEEEcCeE
Q 033599 34 IHPYKVVEITPPPKCLGIRCFPPN------LQCGESVTIEGQA 70 (115)
Q Consensus 34 slP~EV~~~tpp~r~LG~~~Lp~~------pqpG~~leleg~s 70 (115)
..|.++++....++.-|++.|++. ..+|+.|+++|+.
T Consensus 21 ~~p~~l~V~ea~~~D~givrl~p~~m~~Lgl~~GD~V~I~Gkr 63 (187)
T 3tiw_A 21 SRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63 (187)
T ss_dssp -CCCEEEEEECSSCCTTEEEECHHHHHHHTCCTTCEEEEECST
T ss_pred cCCCeEEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEECCC
Confidence 466666654444455788999886 7899999999954
No 32
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=27.76 E-value=72 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCCCCCCeEEEcCeEEEEEEEEEEE
Q 033599 55 PPNLQCGESVTIEGQAYTISAVTHRY 80 (115)
Q Consensus 55 p~~pqpG~~leleg~sY~VlerrHRY 80 (115)
-....+|..|+++|+-|.|.+..|.=
T Consensus 34 a~dlKkG~~I~idG~p~~Vve~~hvK 59 (215)
T 1yby_A 34 AGDFKNGVTFELDGQIFQVIEFQHVK 59 (215)
T ss_dssp GGGCCTTCEEEETTEEEEEEEEEEEC
T ss_pred hhhccCCCEEEECCEEEEEEEEEEEc
Confidence 34678999999999999999999863
No 33
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=26.37 E-value=75 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCCCCCeEEEcCeEEEEEEEEEE
Q 033599 56 PNLQCGESVTIEGQAYTISAVTHR 79 (115)
Q Consensus 56 ~~pqpG~~leleg~sY~VlerrHR 79 (115)
....+|.+|+++|+-|.|.+..|.
T Consensus 34 ~dlrkG~~I~idG~p~~Vve~~~~ 57 (174)
T 1x6o_A 34 GALKKGGYVCINGRPCKVIDLSVS 57 (174)
T ss_dssp GGCCTTCEEEETTEEEEEEEEEEC
T ss_pred HHccCCCEEEECCEEEEEEEEEec
Confidence 347899999999999999999886
No 34
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=26.14 E-value=85 Score=23.23 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=23.2
Q ss_pred CCCCCCeEEEcCeEEEEEEEEEEEEEecce
Q 033599 57 NLQCGESVTIEGQAYTISAVTHRYQLRKGK 86 (115)
Q Consensus 57 ~pqpG~~leleg~sY~VlerrHRYqLr~GR 86 (115)
...+|.+|+++|+-|.|.+..|. +-||
T Consensus 33 dlrkG~~I~idG~P~~Vve~~~~---KpGK 59 (167)
T 3hks_A 33 NIRKGGHIVIKNRPCKVVEVSTS---KTGK 59 (167)
T ss_dssp GCCTTSEEEETTEEEEEEEEEEE---CSST
T ss_pred HccCCCEEEECCEEEEEEEEEEe---CCCC
Confidence 47899999999999999999887 4454
No 35
>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13
Probab=24.89 E-value=46 Score=23.94 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=35.3
Q ss_pred CceeeccceeeeecceeEEEEEecccccccCCCccceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEE
Q 033599 1 MAMVTSNMGAYQKTQMLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRY 80 (115)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slP~EV~~~tpp~r~LG~~~Lp~~pqpG~~leleg~sY~VlerrHRY 80 (115)
|+++-+|..||..+|-+. .+++|-.+ +- .-||.++++|.| ..+.|++=+-+|
T Consensus 1 m~~iP~~l~~yk~tP~~t-------------~~tlP~~l---------l~-~H~~~~Tk~Gtw-----g~l~VL~G~L~f 52 (127)
T 3bb6_A 1 MLQIPQNYIHTRSTPFWN-------------KQTAPAGI---------FE-RHLDKGTRPGVY-----PRLSVMHGAVKY 52 (127)
T ss_dssp CCCCCTTCEEEEECCCBC-------------TTTSCGGG---------GS-SBCCTTCCTTEE-----EEEEEEESEEEE
T ss_pred CccCCCcceEeeecCCCC-------------cccChHHH---------Hh-hccccCCCCCEE-----EEEEEEEeEEEE
Confidence 667777888887776431 12244322 22 337888999998 567888888888
Q ss_pred EE
Q 033599 81 QL 82 (115)
Q Consensus 81 qL 82 (115)
-.
T Consensus 53 ~~ 54 (127)
T 3bb6_A 53 LG 54 (127)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 36
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=24.53 E-value=56 Score=24.88 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.1
Q ss_pred cCCCCCCCCeEEEcCeEEEEEEEEEEEE
Q 033599 54 FPPNLQCGESVTIEGQAYTISAVTHRYQ 81 (115)
Q Consensus 54 Lp~~pqpG~~leleg~sY~VlerrHRYq 81 (115)
++.+-..||||+++|..=.|.+..-|+.
T Consensus 125 ~~~pf~vGD~I~i~~~~G~V~~I~l~~T 152 (285)
T 3udc_A 125 FEDQFSVGDYVTINGISGTVEEIGLRVT 152 (285)
T ss_dssp HTTSCCTTCEEEETTEEEEEEEECSSEE
T ss_pred hhCCccCCCEEEECCEEEEEEEeeeeEE
Confidence 5678899999999999999988877765
No 37
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=24.07 E-value=79 Score=20.90 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCCCCCCCeEEE----cCeEEEEEEEE
Q 033599 55 PPNLQCGESVTI----EGQAYTISAVT 77 (115)
Q Consensus 55 p~~pqpG~~lel----eg~sY~Vlerr 77 (115)
.+.|+||+.+.+ +|+.+.+.+..
T Consensus 30 e~~~~~Gd~~~v~~~~~~~~~~~i~vt 56 (103)
T 1te7_A 30 ESHFKTGDVLRVGRFEDDGYFCTIEVT 56 (103)
T ss_dssp GCCCCTTSEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCCCEEEEEECCCCcEEEEEEEE
Confidence 457999999999 34445554443
No 38
>3q3y_A HEVB EV93 3C protease; cysteine trypsin-like protease, 3C cysteine protease (picorn antiviral compound 1 (AG7404); HET: XNV; 1.32A {Human enterovirus B} SCOP: b.47.1.4 PDB: 3q3x_A* 3ruo_A* 3zyd_A 3zz5_A* 3zz6_A* 3zz7_A* 3zz8_A* 3zz9_A* 3zza_A* 3zzb_A* 2ztx_A 2vb0_A 2zty_A 2ztz_A 2zu3_A* 3zye_A 3zz3_A 2zu1_A 3zz4_A 3zzc_A* ...
Probab=23.21 E-value=1.1e+02 Score=23.32 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=25.0
Q ss_pred EEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecc
Q 033599 52 RCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKG 85 (115)
Q Consensus 52 ~~Lp~~pqpG~~leleg~sY~VlerrHRYqLr~G 85 (115)
+=+|.--.||+.|.++|+.|-|+. .|.|..+
T Consensus 37 ~vvPtHa~~~~~i~i~G~~~~v~d---~~~L~~~ 67 (191)
T 3q3y_A 37 AVLPRHAKPGPTILMNDQEVGVLD---AKELVDK 67 (191)
T ss_dssp EEEEGGGCCCSEEEETTEEEEEEE---EEEEECT
T ss_pred EEEECCCCCCCEEEECCEEEEeee---EEEEEcC
Confidence 345665689999999999999988 7777754
No 39
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=22.83 E-value=57 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=27.0
Q ss_pred CccceEEEEeCCCCceeeeEEcCCC------CCCCCeEEEcCeE
Q 033599 33 NIHPYKVVEITPPPKCLGIRCFPPN------LQCGESVTIEGQA 70 (115)
Q Consensus 33 ~slP~EV~~~tpp~r~LG~~~Lp~~------pqpG~~leleg~s 70 (115)
+..|.++++....++.=|++.|++. ..+|+.|+++|+.
T Consensus 23 ~~~p~~l~V~ea~~~Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr 66 (211)
T 3qwz_A 23 KNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGXK 66 (211)
T ss_dssp ---CEEEEEEECSCCCTTEEEECHHHHHHHTCCBTCEEEEECST
T ss_pred ccCCCeeEEcccccCCCcEEEECHHHHHHcCCCCCCEEEEeCCC
Confidence 3467677664444445788999886 7899999999975
No 40
>1wru_A 43 kDa tail protein; bacteriophage MU, baseplate, gene product 44, structural Pro; 2.10A {Enterobacteria phage MU} SCOP: b.106.1.1 b.106.1.1
Probab=21.56 E-value=1.9e+02 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=30.4
Q ss_pred CCCCCCeEEEc-------CeEEEEEEEEEEEEEecceEEecceeEEEeecchh
Q 033599 57 NLQCGESVTIE-------GQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRY 102 (115)
Q Consensus 57 ~pqpG~~lele-------g~sY~VlerrHRYqLr~GRY~l~~i~L~VQ~~~Ry 102 (115)
..+||..|.+. |+.|+|.+++|.+. ..|.|. ..|.+....-|
T Consensus 291 ~~~pg~~V~v~g~~~~~dg~~~~I~~v~H~~~-~~~G~~---T~l~l~~~~~~ 339 (379)
T 1wru_A 291 LWMPNLLVTIDASKYAIKTTELLVSKVTLILN-DQDGLK---TRVSLAPREGF 339 (379)
T ss_dssp BCCSSCEEEEEEGGGTEECCCEEEEEEEEEEE-TTTEEE---EEEEEEEGGGG
T ss_pred ccCCCCEEEEecCCCCccCcEEEEEEEEEEEe-CCCCeE---EEEEEeCCccc
Confidence 45899999764 45899999999974 245676 45666666555
No 41
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=20.98 E-value=61 Score=24.75 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=24.7
Q ss_pred EcCCCCCCCCeEEEcCeEEEEEEEEEEEE
Q 033599 53 CFPPNLQCGESVTIEGQAYTISAVTHRYQ 81 (115)
Q Consensus 53 ~Lp~~pqpG~~leleg~sY~VlerrHRYq 81 (115)
-++.+-..||||+++|..-.|.+..-||.
T Consensus 125 ~~~~pf~vGD~I~i~g~~G~V~~I~l~~T 153 (286)
T 2vv5_A 125 VMFRPFRAGEYVDLGGVAGTVLSVQIFST 153 (286)
T ss_dssp HTTCSSCTTCEEESSSCEEEEEEECSSEE
T ss_pred HhcCCccCCCEEEECCEEEEEEEEEeEEE
Confidence 35778899999999999999988877774
Done!