Query 033601
Match_columns 115
No_of_seqs 128 out of 1057
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:09:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 9.2E-31 2E-35 205.4 13.2 111 1-115 304-414 (414)
2 TIGR00383 corA magnesium Mg(2+ 99.9 3.2E-25 6.8E-30 170.3 13.7 99 4-113 215-318 (318)
3 COG0598 CorA Mg2+ and Co2+ tra 99.9 4E-25 8.6E-30 171.2 13.3 99 4-113 219-322 (322)
4 PRK09546 zntB zinc transporter 99.9 5E-25 1.1E-29 170.4 13.8 99 4-113 221-324 (324)
5 PRK11085 magnesium/nickel/coba 99.9 1.4E-24 3.1E-29 168.2 13.8 100 3-113 216-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 99.8 1.1E-20 2.4E-25 141.8 9.4 98 3-109 194-292 (292)
7 PF07332 DUF1469: Protein of u 93.3 1.6 3.4E-05 28.9 10.7 53 18-71 10-62 (121)
8 PF03904 DUF334: Domain of unk 91.3 3.7 7.9E-05 30.9 9.4 47 17-63 122-168 (230)
9 TIGR02230 ATPase_gene1 F0F1-AT 90.8 3.4 7.3E-05 27.3 8.2 25 48-72 44-68 (100)
10 PF10267 Tmemb_cc2: Predicted 85.1 18 0.00039 29.4 10.4 24 46-74 345-368 (395)
11 PRK15348 type III secretion sy 83.5 1.9 4.1E-05 32.9 3.9 10 64-73 200-209 (249)
12 PF11286 DUF3087: Protein of u 78.9 11 0.00024 27.1 6.3 54 48-113 23-76 (165)
13 PF08372 PRT_C: Plant phosphor 77.4 23 0.0005 25.1 7.6 66 5-70 59-127 (156)
14 PF04011 LemA: LemA family; I 76.6 10 0.00022 27.0 5.8 19 56-75 154-172 (186)
15 PF10046 BLOC1_2: Biogenesis o 75.9 12 0.00025 24.3 5.4 24 3-26 61-84 (99)
16 PF01544 CorA: CorA-like Mg2+ 73.3 34 0.00074 25.2 8.9 48 10-57 194-242 (292)
17 PRK09458 pspB phage shock prot 72.7 4.7 0.0001 25.3 2.7 31 4-34 38-68 (75)
18 PF13042 DUF3902: Protein of u 71.5 15 0.00033 26.1 5.4 41 28-71 50-91 (161)
19 PF13273 DUF4064: Protein of u 70.7 13 0.00028 23.7 4.6 25 46-70 5-29 (100)
20 PF06667 PspB: Phage shock pro 70.6 4.4 9.6E-05 25.3 2.3 28 7-34 41-68 (75)
21 PF06570 DUF1129: Protein of u 70.6 23 0.00051 25.7 6.5 23 48-71 149-171 (206)
22 PF06238 Borrelia_lipo_2: Borr 70.2 16 0.00035 24.3 4.9 15 31-45 86-100 (111)
23 PF10272 Tmpp129: Putative tra 70.2 12 0.00025 30.1 5.1 44 27-70 17-60 (358)
24 PRK11085 magnesium/nickel/coba 68.3 56 0.0012 25.6 12.4 98 8-112 214-312 (316)
25 KOG1691 emp24/gp25L/p24 family 68.3 47 0.001 24.8 7.8 19 35-56 170-188 (210)
26 PF03649 UPF0014: Uncharacteri 67.4 52 0.0011 24.9 10.1 62 3-67 145-210 (250)
27 PF06825 HSBP1: Heat shock fac 67.0 14 0.00031 21.6 3.8 23 13-35 26-48 (54)
28 PHA03231 glycoprotein BALF4; P 64.0 50 0.0011 29.5 8.1 13 54-66 685-697 (829)
29 PF02656 DUF202: Domain of unk 63.9 29 0.00062 20.7 7.9 16 97-112 58-73 (73)
30 TIGR02976 phageshock_pspB phag 63.9 7.6 0.00016 24.2 2.4 27 7-33 41-67 (75)
31 PF14316 DUF4381: Domain of un 63.5 26 0.00056 24.0 5.3 10 81-90 17-26 (146)
32 TIGR01167 LPXTG_anchor LPXTG-m 62.3 14 0.00031 18.6 3.0 9 102-110 24-32 (34)
33 PF00804 Syntaxin: Syntaxin; 61.1 36 0.00079 20.9 5.5 34 3-36 2-35 (103)
34 PRK15361 pathogenicity island 60.4 42 0.0009 24.7 6.0 37 4-44 155-191 (195)
35 PF04156 IncA: IncA protein; 59.9 22 0.00048 25.1 4.5 20 48-67 6-25 (191)
36 TIGR03044 PS_II_psb27 photosys 59.8 47 0.001 23.1 5.9 62 2-67 33-106 (135)
37 PF10856 DUF2678: Protein of u 59.7 9.7 0.00021 25.8 2.5 21 46-66 31-51 (118)
38 smart00503 SynN Syntaxin N-ter 59.4 36 0.00079 21.7 5.2 33 3-35 3-35 (117)
39 PF05884 ZYG-11_interact: Inte 59.4 85 0.0019 24.7 8.8 24 51-74 107-130 (299)
40 TIGR00807 malonate_madL malona 59.4 34 0.00074 23.4 5.1 52 49-114 6-57 (125)
41 PTZ00370 STEVOR; Provisional 59.0 16 0.00036 28.5 3.9 15 48-62 185-199 (296)
42 COG0598 CorA Mg2+ and Co2+ tra 59.0 82 0.0018 24.4 9.2 100 5-111 217-317 (322)
43 PF08006 DUF1700: Protein of u 59.0 15 0.00034 25.9 3.6 13 4-16 4-16 (181)
44 PF01102 Glycophorin_A: Glycop 58.9 23 0.0005 24.1 4.2 6 85-90 67-72 (122)
45 TIGR01478 STEVOR variant surfa 58.6 17 0.00037 28.4 3.9 16 48-63 185-200 (295)
46 KOG2662 Magnesium transporters 57.9 75 0.0016 26.1 7.6 61 10-74 306-370 (414)
47 PF10267 Tmemb_cc2: Predicted 56.0 51 0.0011 26.8 6.4 34 13-46 274-318 (395)
48 PF02060 ISK_Channel: Slow vol 55.4 28 0.00062 23.9 4.2 31 82-112 41-71 (129)
49 PRK11677 hypothetical protein; 54.3 70 0.0015 22.1 6.3 30 3-32 45-75 (134)
50 PRK13682 hypothetical protein; 53.1 16 0.00036 21.1 2.4 17 52-68 4-20 (51)
51 cd00179 SynN Syntaxin N-termin 52.1 47 0.001 22.3 5.0 34 3-36 1-34 (151)
52 PF06703 SPC25: Microsomal sig 51.9 73 0.0016 22.1 6.1 21 48-71 31-51 (162)
53 COG3402 Uncharacterized conser 51.9 86 0.0019 22.4 7.0 21 50-70 22-42 (161)
54 PF06210 DUF1003: Protein of u 51.3 70 0.0015 21.2 5.9 53 52-108 4-56 (108)
55 PRK14584 hmsS hemin storage sy 51.3 86 0.0019 22.2 7.5 24 45-68 17-40 (153)
56 PF04971 Lysis_S: Lysis protei 50.7 36 0.00078 20.9 3.7 11 101-111 49-59 (68)
57 PF14126 DUF4293: Domain of un 48.8 78 0.0017 22.0 5.7 33 37-71 73-106 (149)
58 PF03817 MadL: Malonate transp 48.3 62 0.0013 22.1 4.9 52 49-114 6-57 (125)
59 PF14015 DUF4231: Protein of u 47.3 73 0.0016 20.2 8.2 7 49-55 21-27 (112)
60 PLN00061 photosystem II protei 47.0 1E+02 0.0022 21.8 6.3 69 2-73 52-135 (150)
61 PF15086 UPF0542: Uncharacteri 47.0 56 0.0012 20.3 4.2 29 79-107 16-44 (74)
62 PF03408 Foamy_virus_ENV: Foam 46.9 36 0.00078 30.4 4.4 62 9-70 861-941 (981)
63 PLN00064 photosystem II protei 45.9 87 0.0019 22.5 5.6 60 4-66 64-134 (166)
64 PF15431 TMEM190: Transmembran 45.4 25 0.00055 23.8 2.7 31 80-112 59-89 (134)
65 PF12263 DUF3611: Protein of u 44.6 1.2E+02 0.0026 22.0 6.9 15 47-61 26-40 (183)
66 PF06695 Sm_multidrug_ex: Puta 44.5 94 0.002 20.7 8.5 15 57-71 91-105 (121)
67 PF01299 Lamp: Lysosome-associ 44.5 14 0.0003 28.5 1.6 25 86-110 274-298 (306)
68 PF14584 DUF4446: Protein of u 44.4 62 0.0013 22.7 4.7 31 3-33 48-78 (151)
69 TIGR03141 cytochro_ccmD heme e 44.3 55 0.0012 18.0 3.8 13 101-113 22-34 (45)
70 COG3105 Uncharacterized protei 43.9 1.1E+02 0.0023 21.3 5.8 34 3-36 50-84 (138)
71 PRK14756 hypothetical protein; 43.9 32 0.0007 17.5 2.3 18 46-63 4-21 (29)
72 KOG3850 Predicted membrane pro 43.4 1.9E+02 0.004 23.9 11.7 23 47-74 395-417 (455)
73 PTZ00382 Variant-specific surf 43.1 5 0.00011 26.1 -1.0 8 103-110 87-94 (96)
74 PF11026 DUF2721: Protein of u 42.8 1E+02 0.0022 20.8 9.8 67 4-70 17-93 (130)
75 PF09583 Phageshock_PspG: Phag 42.5 43 0.00093 20.4 3.1 16 57-72 32-47 (65)
76 COG1459 PulF Type II secretory 42.1 1.9E+02 0.0041 23.5 9.0 20 55-74 182-201 (397)
77 PF11970 Git3_C: G protein-cou 42.0 83 0.0018 19.4 5.1 32 81-112 42-74 (76)
78 COG5487 Small integral membran 40.9 34 0.00073 19.9 2.4 18 52-69 4-21 (54)
79 PF02439 Adeno_E3_CR2: Adenovi 40.9 62 0.0013 17.6 3.9 10 102-111 23-32 (38)
80 KOG2861 Uncharacterized conser 40.8 92 0.002 25.5 5.7 62 3-67 325-389 (399)
81 PRK10881 putative hydrogenase 40.7 1E+02 0.0023 24.6 6.0 9 80-88 50-58 (394)
82 PF06645 SPC12: Microsomal sig 40.6 37 0.00081 21.0 2.8 24 49-72 13-36 (76)
83 PF12210 Hrs_helical: Hepatocy 40.6 1E+02 0.0023 20.1 5.4 30 5-34 60-89 (96)
84 TIGR00353 nrfE c-type cytochro 40.5 87 0.0019 26.8 5.7 23 48-70 218-240 (576)
85 TIGR00383 corA magnesium Mg(2+ 40.0 1.6E+02 0.0036 22.2 12.7 64 5-68 213-277 (318)
86 PF09972 DUF2207: Predicted me 39.8 1.1E+02 0.0023 24.4 6.0 21 49-69 400-420 (511)
87 COG4803 Predicted membrane pro 39.6 24 0.00052 25.2 1.9 47 16-72 16-74 (170)
88 PF11712 Vma12: Endoplasmic re 39.1 1.2E+02 0.0027 20.6 7.3 10 60-69 92-101 (142)
89 PRK09546 zntB zinc transporter 39.1 1.8E+02 0.0039 22.4 10.9 28 8-35 222-249 (324)
90 PRK15122 magnesium-transportin 38.9 1.4E+02 0.003 26.8 7.0 9 105-113 894-903 (903)
91 PF09990 DUF2231: Predicted me 38.5 1E+02 0.0023 19.6 5.8 24 48-71 7-30 (104)
92 PRK10517 magnesium-transportin 38.5 1.6E+02 0.0035 26.4 7.3 15 55-69 853-867 (902)
93 PF11346 DUF3149: Protein of u 38.0 73 0.0016 17.6 4.4 16 95-110 21-36 (42)
94 PF05461 ApoL: Apolipoprotein 37.2 1.5E+02 0.0032 23.3 6.3 20 22-41 76-95 (313)
95 PF07439 DUF1515: Protein of u 36.6 1.3E+02 0.0029 20.2 5.8 33 1-33 1-33 (112)
96 PF15176 LRR19-TM: Leucine-ric 36.3 63 0.0014 21.4 3.4 16 95-110 26-41 (102)
97 PF07043 DUF1328: Protein of u 35.7 22 0.00048 19.4 1.0 14 55-68 2-15 (39)
98 PF13978 DUF4223: Protein of u 35.7 36 0.00078 19.9 2.0 21 40-64 2-22 (56)
99 TIGR03521 GldG gliding-associa 35.5 58 0.0013 27.3 4.0 30 82-111 520-549 (552)
100 TIGR02975 phageshock_pspG phag 35.4 62 0.0013 19.6 3.0 16 57-72 31-46 (64)
101 PF10104 Brr6_like_C_C: Di-sul 35.2 1.5E+02 0.0032 20.3 5.9 38 31-71 93-130 (135)
102 PRK13023 bifunctional preprote 35.1 3.3E+02 0.0071 24.3 8.6 15 48-62 683-697 (758)
103 PF04956 TrbC: TrbC/VIRB2 fami 35.0 79 0.0017 19.8 3.8 6 39-44 42-47 (99)
104 PF10577 UPF0560: Uncharacteri 35.0 44 0.00096 29.7 3.2 31 82-112 271-302 (807)
105 KOG3850 Predicted membrane pro 34.9 1.6E+02 0.0034 24.3 6.1 38 13-50 322-370 (455)
106 PF06363 Picorna_P3A: Picornav 34.2 1.4E+02 0.0029 19.6 8.7 17 4-20 8-24 (100)
107 PF11669 WBP-1: WW domain-bind 34.2 66 0.0014 21.0 3.3 9 82-90 21-29 (102)
108 PF00510 COX3: Cytochrome c ox 34.0 2E+02 0.0044 21.5 10.2 37 31-67 64-100 (258)
109 PRK06926 flagellar motor prote 33.5 83 0.0018 24.2 4.2 39 49-93 7-49 (271)
110 PF10112 Halogen_Hydrol: 5-bro 32.6 96 0.0021 22.2 4.3 20 50-69 11-30 (199)
111 PF04531 Phage_holin_1: Bacter 32.4 1E+02 0.0022 19.4 3.9 24 48-71 14-37 (84)
112 PF04995 CcmD: Heme exporter p 32.2 93 0.002 17.1 3.8 12 101-112 21-32 (46)
113 KOG4234 TPR repeat-containing 31.7 2.3E+02 0.0051 21.6 6.8 32 37-72 216-247 (271)
114 PF11902 DUF3422: Protein of u 31.7 2.9E+02 0.0063 22.7 10.1 29 8-36 305-333 (420)
115 PF06295 DUF1043: Protein of u 31.4 1.7E+02 0.0036 19.7 6.3 29 3-31 41-70 (128)
116 PF13140 DUF3980: Domain of un 31.1 1.4E+02 0.003 18.8 4.9 29 48-76 13-42 (87)
117 PF10779 XhlA: Haemolysin XhlA 31.0 1.2E+02 0.0027 18.1 8.6 21 8-28 6-26 (71)
118 PF03613 EIID-AGA: PTS system 30.4 2.5E+02 0.0054 21.5 7.7 70 35-112 169-242 (264)
119 PF10444 Nbl1_Borealin_N: Nbl1 30.4 1.2E+02 0.0025 17.6 4.9 33 5-37 5-38 (59)
120 PF05568 ASFV_J13L: African sw 30.3 90 0.0019 22.3 3.6 15 95-109 40-54 (189)
121 COG1422 Predicted membrane pro 30.3 2.3E+02 0.005 21.0 8.5 12 37-48 112-123 (201)
122 TIGR00833 actII Transport prot 30.1 3.3E+02 0.0071 24.4 7.9 24 48-71 275-298 (910)
123 PRK10369 heme lyase subunit Nr 29.8 1.6E+02 0.0035 25.2 5.7 22 49-70 273-294 (571)
124 PRK05771 V-type ATP synthase s 29.7 3.5E+02 0.0076 23.1 7.8 28 42-71 392-419 (646)
125 PF06609 TRI12: Fungal trichot 29.6 1.4E+02 0.003 25.7 5.2 49 33-90 156-204 (599)
126 PF11945 WASH_WAHD: WAHD domai 29.6 2.8E+02 0.006 21.7 6.8 39 13-51 23-61 (297)
127 PF05802 EspB: Enterobacterial 29.6 1.5E+02 0.0032 23.3 5.0 30 3-32 274-304 (317)
128 TIGR03024 arch_pef_cterm PEF-C 29.5 82 0.0018 15.6 2.5 8 104-111 18-25 (26)
129 PF13580 SIS_2: SIS domain; PD 29.1 1.4E+02 0.0031 19.9 4.4 31 5-35 1-32 (138)
130 PF04418 DUF543: Domain of unk 28.6 44 0.00096 20.8 1.7 12 101-112 42-53 (75)
131 PF00746 Gram_pos_anchor: Gram 28.6 19 0.00041 18.9 0.0 10 101-110 30-39 (39)
132 PF15050 SCIMP: SCIMP protein 28.3 1.4E+02 0.0031 20.5 4.2 16 94-109 18-33 (133)
133 PF13326 PSII_Pbs27: Photosyst 27.9 1.3E+02 0.0029 20.9 4.2 63 4-69 47-120 (145)
134 PRK09110 flagellar motor prote 27.9 1.4E+02 0.0029 23.2 4.6 39 49-93 2-42 (283)
135 PRK15066 inner membrane transp 27.8 1.5E+02 0.0033 21.7 4.8 23 93-115 235-257 (257)
136 KOG0860 Synaptobrevin/VAMP-lik 27.7 2E+02 0.0043 19.5 8.2 14 48-61 97-110 (116)
137 COG4267 Predicted membrane pro 27.7 3.6E+02 0.0078 22.4 9.5 47 22-70 313-359 (467)
138 KOG0809 SNARE protein TLG2/Syn 27.7 1E+02 0.0022 24.2 3.9 23 36-58 275-297 (305)
139 PLN00053 photosystem II subuni 27.6 42 0.0009 22.6 1.5 20 65-84 60-81 (117)
140 PF11177 DUF2964: Protein of u 27.4 1.5E+02 0.0032 17.9 5.7 26 47-72 8-33 (62)
141 TIGR01598 holin_phiLC3 holin, 26.8 93 0.002 19.5 2.9 24 48-71 13-36 (78)
142 COG4956 Integral membrane prot 26.4 3.3E+02 0.0072 21.9 6.5 34 37-74 68-102 (356)
143 KOG0811 SNARE protein PEP12/VA 26.0 3.1E+02 0.0067 21.2 7.7 15 7-21 189-203 (269)
144 PRK09459 pspG phage shock prot 25.9 1.3E+02 0.0029 18.8 3.4 15 57-71 32-46 (76)
145 PRK12911 bifunctional preprote 25.6 6.1E+02 0.013 24.4 9.3 15 48-62 1344-1358(1403)
146 PF11857 DUF3377: Domain of un 25.5 50 0.0011 20.6 1.5 18 94-111 41-58 (74)
147 COG4597 BatB ABC-type amino ac 25.5 1.4E+02 0.003 24.0 4.2 35 76-111 178-212 (397)
148 PRK08124 flagellar motor prote 25.4 1.6E+02 0.0035 22.3 4.6 39 49-93 4-44 (263)
149 PRK14011 prefoldin subunit alp 25.2 2.4E+02 0.0052 19.6 5.3 26 3-28 12-37 (144)
150 PRK08990 flagellar motor prote 25.2 1.4E+02 0.0031 22.6 4.2 39 49-93 4-43 (254)
151 PF13124 DUF3963: Protein of u 25.0 1.1E+02 0.0024 16.5 2.6 15 3-17 9-23 (40)
152 PF04210 MtrG: Tetrahydrometha 24.9 1.8E+02 0.0038 18.0 8.5 33 9-41 13-45 (70)
153 PF15179 Myc_target_1: Myc tar 24.9 1E+02 0.0022 22.6 3.2 17 93-109 33-49 (197)
154 PF13213 DUF4021: Protein of u 24.9 24 0.00053 19.8 0.0 9 61-69 25-33 (46)
155 PRK10963 hypothetical protein; 24.8 1.7E+02 0.0037 21.5 4.5 28 15-42 44-72 (223)
156 TIGR03068 srtB_sig_NPQTN sorta 24.8 1.2E+02 0.0026 15.9 3.0 10 102-111 24-33 (33)
157 PRK09579 multidrug efflux prot 24.6 3.1E+02 0.0067 24.9 6.8 18 49-67 439-456 (1017)
158 PF09451 ATG27: Autophagy-rela 24.4 84 0.0018 23.8 2.9 30 80-109 197-226 (268)
159 cd00584 Prefoldin_alpha Prefol 24.4 2.1E+02 0.0046 18.7 5.1 30 3-32 8-37 (129)
160 TIGR00261 traB pheromone shutd 24.4 1.5E+02 0.0032 24.1 4.3 29 36-64 344-372 (380)
161 KOG4343 bZIP transcription fac 24.3 1.8E+02 0.004 25.0 5.0 24 51-74 357-382 (655)
162 PHA02650 hypothetical protein; 24.2 2E+02 0.0043 18.2 4.3 12 98-109 61-72 (81)
163 PF01105 EMP24_GP25L: emp24/gp 24.1 26 0.00055 23.8 0.0 6 103-108 174-179 (183)
164 PF11044 TMEMspv1-c74-12: Plec 24.0 1.5E+02 0.0032 16.8 3.9 18 94-111 14-31 (49)
165 PRK15238 inner membrane transp 24.0 2.9E+02 0.0063 22.4 6.1 13 102-114 483-495 (496)
166 PF12575 DUF3753: Protein of u 23.9 1.9E+02 0.0041 17.9 4.0 6 103-108 65-70 (72)
167 PF08227 DASH_Hsk3: DASH compl 23.8 1.5E+02 0.0032 16.6 5.8 35 8-44 2-36 (45)
168 PRK09109 motC flagellar motor 23.5 1.8E+02 0.004 21.8 4.5 39 49-93 4-44 (246)
169 TIGR00245 conserved hypothetic 23.5 3.3E+02 0.0072 20.6 8.1 19 49-67 186-204 (248)
170 KOG4117 Heat shock factor bind 23.5 1.9E+02 0.004 17.7 4.9 26 11-36 37-62 (73)
171 KOG0810 SNARE protein Syntaxin 23.5 2E+02 0.0044 22.4 4.9 35 3-37 35-69 (297)
172 COG5130 YIP3 Prenylated rab ac 23.5 1.8E+02 0.004 20.6 4.1 23 48-70 71-99 (169)
173 PF04725 PsbR: Photosystem II 23.4 61 0.0013 21.2 1.6 20 65-84 42-63 (99)
174 TIGR01149 mtrG N5-methyltetrah 23.2 1.9E+02 0.0042 17.8 8.6 33 9-41 13-45 (70)
175 PF11694 DUF3290: Protein of u 22.9 1.6E+02 0.0036 20.5 3.9 17 95-111 26-42 (149)
176 PF05360 YiaAB: yiaA/B two hel 22.9 1.6E+02 0.0035 16.8 4.9 34 49-90 4-37 (53)
177 COG5124 Protein predicted to b 22.7 3.1E+02 0.0068 20.2 5.3 26 10-35 84-109 (209)
178 PF13303 PTS_EIIC_2: Phosphotr 22.7 1.6E+02 0.0035 23.3 4.2 22 94-115 300-322 (327)
179 PF10666 Phage_Gp14: Phage pro 22.6 2.7E+02 0.0059 19.3 6.1 40 5-44 90-129 (140)
180 PRK08456 flagellar motor prote 22.5 2E+02 0.0044 21.7 4.6 39 49-93 4-44 (257)
181 PRK13021 secF preprotein trans 22.2 3.8E+02 0.0082 20.8 9.3 30 27-61 215-244 (297)
182 PF03814 KdpA: Potassium-trans 21.7 92 0.002 26.6 2.8 13 63-75 229-241 (552)
183 PF10883 DUF2681: Protein of u 21.6 1.8E+02 0.0039 18.6 3.5 15 97-111 13-27 (87)
184 PF06127 DUF962: Protein of un 21.6 2.3E+02 0.0049 18.0 7.5 18 27-44 4-24 (95)
185 PF10176 DUF2370: Protein of u 21.4 1.8E+02 0.004 22.0 4.1 18 95-112 204-221 (233)
186 PF13805 Pil1: Eisosome compon 21.3 3.6E+02 0.0078 20.9 5.8 27 9-35 97-123 (271)
187 PF05393 Hum_adeno_E3A: Human 21.2 2E+02 0.0043 18.7 3.7 7 105-111 54-60 (94)
188 PF13865 FoP_duplication: C-te 21.2 2.1E+02 0.0045 17.4 4.3 28 17-44 42-69 (74)
189 PF08173 YbgT_YccB: Membrane b 21.2 1.3E+02 0.0029 15.1 3.5 11 83-93 2-12 (28)
190 PHA02047 phage lambda Rz1-like 20.9 2.6E+02 0.0056 18.4 4.3 40 5-44 31-73 (101)
191 COG1622 CyoA Heme/copper-type 20.8 2.6E+02 0.0057 21.2 4.9 17 56-73 6-22 (247)
192 PF05465 Halo_GVPC: Halobacter 20.8 1.4E+02 0.0031 15.3 3.6 24 11-34 2-25 (32)
193 KOG1277 Endosomal membrane pro 20.7 76 0.0016 26.8 2.1 26 48-73 402-427 (593)
194 PF03988 DUF347: Repeat of Unk 20.7 1.8E+02 0.004 16.6 3.4 14 57-70 12-25 (55)
195 PRK14127 cell division protein 20.6 2.7E+02 0.0059 18.5 4.6 9 16-24 52-60 (109)
196 PRK10803 tol-pal system protei 20.5 3.8E+02 0.0083 20.2 6.6 38 7-44 60-97 (263)
197 PHA03054 IMV membrane protein; 20.3 2.3E+02 0.0049 17.5 4.3 8 101-108 63-70 (72)
198 PF12597 DUF3767: Protein of u 20.3 2.8E+02 0.0061 18.5 5.0 25 79-111 67-91 (118)
199 PF15102 TMEM154: TMEM154 prot 20.2 19 0.0004 25.4 -1.3 6 81-86 53-58 (146)
200 PF03176 MMPL: MMPL family; I 20.1 3.5E+02 0.0076 20.5 5.6 22 50-71 247-268 (333)
201 TIGR02106 cyd_oper_ybgT cyd op 20.1 1.5E+02 0.0032 15.2 3.6 11 83-93 2-12 (30)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.2e-31 Score=205.43 Aligned_cols=111 Identities=45% Similarity=0.737 Sum_probs=107.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccC
Q 033601 1 MLLEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITIELFDHTKA 80 (115)
Q Consensus 1 ~lLe~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~ 80 (115)
||||+||+++|++.+++++++|++|++||.+++++|++||++|++++.||+.|.+++..++|+|+||||+++++ ++
T Consensus 304 MLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l----~~ 379 (414)
T KOG2662|consen 304 MLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSL----EE 379 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh----cc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 033601 81 RMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLLES 115 (115)
Q Consensus 81 ~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl~~ 115 (115)
+++.|+|++++++++|+.++.+...|+|+||.+++
T Consensus 380 ~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~ 414 (414)
T KOG2662|consen 380 DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL 414 (414)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 88999999999999999999999999999998753
No 2
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=99.93 E-value=3.2e-25 Score=170.27 Aligned_cols=99 Identities=15% Similarity=0.292 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccccccc
Q 033601 4 EAYFVQVDGIVN----KLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT-IELFDHT 78 (115)
Q Consensus 4 e~Y~~~~~~~~~----~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~-~~~~~~~ 78 (115)
+.|++|+.++.+ .++.++|.++.+.|.+.+..++++|++|| +||++|++|+|+|+|||+|||||+ .|.
T Consensus 215 ~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk---~LTvvt~IflP~t~IaGiyGMNf~~mP~---- 287 (318)
T TIGR00383 215 REYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMK---ILTVVSTIFIPLTFIAGIYGMNFKFMPE---- 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhCCcccCcc----
Confidence 467888666554 45668889999999999999999999999 799999999999999999999998 443
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
.+++++|+++.+++ +++++++++|||||||+
T Consensus 288 l~~~~gy~~~l~~m----~~i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 288 LNWKYGYPAVLIVM----AVIALGPLIYFRRKGWL 318 (318)
T ss_pred ccchhHHHHHHHHH----HHHHHHHHHHHHHcCCC
Confidence 56777777766654 45566789999999996
No 3
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4e-25 Score=171.22 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-cccccc
Q 033601 4 EAYFVQVDGIVNK----LSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITI-ELFDHT 78 (115)
Q Consensus 4 e~Y~~~~~~~~~~----~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~-~~~~~~ 78 (115)
+.|++|+.++..+ ++.+++.++.+.|.+.+.+++++|++|| +||++|++|+|+|+|||+|||||+. |.
T Consensus 219 ~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk---~LTi~s~iflPpTlIagiyGMNf~~mPe---- 291 (322)
T COG0598 219 REYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMK---ILTIVSTIFLPPTLITGFYGMNFKGMPE---- 291 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHcccccCCCCCcC----
Confidence 4677777776654 5677888889999999999999999999 7999999999999999999999984 43
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
.+++++||+++++ ++++++++++|||||||+
T Consensus 292 l~~~~Gy~~~l~~----m~~~~~~~~~~frrk~Wl 322 (322)
T COG0598 292 LDWPYGYPIALIL----MLLLALLLYLYFRRKGWL 322 (322)
T ss_pred CCCcccHHHHHHH----HHHHHHHHHHHHHhcCcC
Confidence 5777777777664 456667899999999996
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=99.93 E-value=5e-25 Score=170.42 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccccccc
Q 033601 4 EAYFVQVDGIVNK----LSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT-IELFDHT 78 (115)
Q Consensus 4 e~Y~~~~~~~~~~----~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~-~~~~~~~ 78 (115)
..|++|+.++..+ ++++++.++.+.|.+.+.+++++|++|| +||++|++|+|+|+|||+|||||+ .|+
T Consensus 221 ~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~---~Ltilt~IflPlT~IaGiyGMNf~~mPe---- 293 (324)
T PRK09546 221 RRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTY---TMSLMAMVFLPTTFLTGLFGVNLGGIPG---- 293 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccccCCCCC----
Confidence 4688888877654 5667777888999999999999999999 799999999999999999999998 554
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
.+++++|++++++ ++++++++++|||||||+
T Consensus 294 l~~~~gy~~~l~i----m~~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 294 GGWPFGFSIFCLL----LVVLIGGVAWWLKRSKWL 324 (324)
T ss_pred cCCcchHHHHHHH----HHHHHHHHHHHHHhcccC
Confidence 5677777766654 456666889999999996
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.92 E-value=1.4e-24 Score=168.21 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccccCC
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT-IELFDHTKAR 81 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~-~~~~~~~~~~ 81 (115)
+..+++|++++.+..+.+++.++.+.|.+.+.+++++|++|| +||++|++|+|+|+|||+|||||+ .|. .++
T Consensus 216 ~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk---~lTv~s~if~pptliagiyGMNf~~mP~----~~~ 288 (316)
T PRK11085 216 AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIK---IFSVVSVVFLPPTLVASSYGMNFEFMPE----LKW 288 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHhhcccccCCCCC----CCC
Confidence 357889999999999999999999999999999999999999 799999999999999999999998 442 345
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 82 MPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
+++|++++++ ++++++++++|||||||+
T Consensus 289 ~~g~~~~l~~----~~~~~~~~~~~f~rk~Wl 316 (316)
T PRK11085 289 SFGYPGAIIL----MILAGLAPYLYFKRKNWL 316 (316)
T ss_pred cHHHHHHHHH----HHHHHHHHHHHHHHcccC
Confidence 5555544443 445566789999999996
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.84 E-value=1.1e-20 Score=141.82 Aligned_cols=98 Identities=19% Similarity=0.387 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcccccccCC
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT-IELFDHTKAR 81 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~-~~~~~~~~~~ 81 (115)
++...++++.+.++++.+++.++++.+.+.+.+++++|+.|| +||++|++|+|+|+|||+|||||+ .|+ .++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~---~LT~~t~iflPlt~i~g~fGMN~~~~p~----~~~ 266 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMK---VLTIVTAIFLPLTFITGIFGMNFKGMPE----LDW 266 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHHHHHHHHHTTSTTS-SS---S----SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhCCccCCCc----cCC
Confidence 344555556667778889999999999999999999999999 799999999999999999999998 554 556
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033601 82 MPEFLWTVAGGTIGTIFLYAAAIAWYKY 109 (115)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~~~~~fk~ 109 (115)
+++++++.+ ++++++++++.++||||
T Consensus 267 ~~g~~~~~~--~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 267 PYGYFFVII--LGLMILVAILLYWWFKR 292 (292)
T ss_dssp SS-SHHH----HHHHHHHHHHHHCCTTS
T ss_pred ccHHHHHHH--HHHHHHHHHHHHHheeC
Confidence 665555432 33456666677888875
No 7
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=93.28 E-value=1.6 Score=28.89 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 18 STLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 18 ~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
+++++.+++-.|+....+..+..+..+ .+.+.+++.+++..+++...++-.+-
T Consensus 10 ~~~~~lv~~~i~La~~E~~~~~~~~~~-~~~~~~~a~vl~~~~l~~l~~al~~~ 62 (121)
T PF07332_consen 10 DDLSTLVRTRIELAKAELREKARRLGR-GLALLVLAAVLALLALLFLLVALVFA 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444666666777777777777665 23455666666666666666666654
No 8
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=91.26 E-value=3.7 Score=30.94 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 033601 17 LSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALV 63 (115)
Q Consensus 17 ~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~ 63 (115)
+..+++..+...+-+....+..+++.-.+-.-++++-.+|+..+++.
T Consensus 122 i~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 122 IKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333222114555555555555544
No 9
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=90.77 E-value=3.4 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNITI 72 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~~ 72 (115)
.++.++..++.+++++.+.|.=++.
T Consensus 44 ~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 44 MFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888889999999999999998874
No 10
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.11 E-value=18 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 033601 46 GVMLTTATLVISAFIALVGVFGMNITIEL 74 (115)
Q Consensus 46 ~l~Lti~t~i~~p~t~i~g~fGMN~~~~~ 74 (115)
++.||++++++...+.+++ ++.|+
T Consensus 345 nllL~l~~vlLv~vSt~~~-----~~~Pl 368 (395)
T PF10267_consen 345 NLLLTLLTVLLVFVSTVAN-----CPLPL 368 (395)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCcHH
Confidence 4677777777776666654 45665
No 11
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=83.45 E-value=1.9 Score=32.85 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=7.5
Q ss_pred HHhcCCCCCc
Q 033601 64 GVFGMNITIE 73 (115)
Q Consensus 64 g~fGMN~~~~ 73 (115)
.++|||+..+
T Consensus 200 ~~~~~~~~~~ 209 (249)
T PRK15348 200 TFWIMDVINA 209 (249)
T ss_pred cccccccccc
Confidence 3789999754
No 12
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=78.89 E-value=11 Score=27.06 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 48 MLTTATLVISAFIALVGVFGMNITIELFDHTKARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
..+.+...++..++...+|| .| +...|+|=..|.+ ++.++..+.+..+|.+-|+
T Consensus 23 v~~lai~sl~~s~llI~lFg----~~-------~~~nf~~NllGVi-l~~~~~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 23 VASLAILSLAFSQLLIALFG----GE-------SGGNFHWNLLGVI-LGLLLTSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcC----CC-------CCCceeeeHHHHH-HHHHHHHHHHHHHccChHH
Confidence 44445555666788888999 21 2222443333322 2333444455577777775
No 13
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=77.37 E-value=23 Score=25.13 Aligned_cols=66 Identities=12% Similarity=0.271 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYINIMLD---DKQNNLLQMGVMLTTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~---~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~ 70 (115)
.=|+.+.++..+++.+.+.+.+.-|.+++.++ -+.-.+.-+-.....+.+.+.|.-.+.-++|-|.
T Consensus 59 ~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~ 127 (156)
T PF08372_consen 59 MRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYK 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567777777777777777777777777775 2222333322334445556778887777777765
No 14
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=76.59 E-value=10 Score=27.04 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=0.4
Q ss_pred HHHHHHHHHHhcCCCCCccc
Q 033601 56 ISAFIALVGVFGMNITIELF 75 (115)
Q Consensus 56 ~~p~t~i~g~fGMN~~~~~~ 75 (115)
-.|.+++++++|..- -|+|
T Consensus 154 ~FP~~lvA~~~gf~~-~~~f 172 (186)
T PF04011_consen 154 QFPTNLVAGIFGFKP-KEYF 172 (186)
T ss_dssp -------------------S
T ss_pred hccHHHHHHhcCCCc-CCCc
Confidence 479999999999764 3444
No 15
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=75.86 E-value=12 Score=24.29 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDD 26 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~ 26 (115)
+++|.++++++-.+++.+.+.++.
T Consensus 61 l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 61 LQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777766666665444443
No 16
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=73.34 E-value=34 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHh-HHHHHHHHHHHHHH
Q 033601 10 VDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLL-QMGVMLTTATLVIS 57 (115)
Q Consensus 10 ~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m-~~~l~Lti~t~i~~ 57 (115)
++++.++++++.+.++.+++..+...+...|.+- +.+-.+..+|.+-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~ 242 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTA 242 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666677778877777765554432 22225554444333
No 17
>PRK09458 pspB phage shock protein B; Provisional
Probab=72.72 E-value=4.7 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033601 4 EAYFVQVDGIVNKLSTLREYVDDTEDYINIM 34 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 34 (115)
+.=.++++++.+++++++++++.+|+..+..
T Consensus 38 ~~d~~~L~~L~~~A~rm~~RI~tLE~ILDae 68 (75)
T PRK09458 38 QEEQQRLAQLTEKAERMRERIQALEAILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3446778999999999999999998877654
No 18
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=71.47 E-value=15 Score=26.05 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHh-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 28 EDYINIML-DDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 28 ~~~~~~~l-~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
.+++.... |.+-+++++ +-+++|..++....+.|++=++..
T Consensus 50 i~Ly~~~ty~k~~~k~l~---kt~~iSF~~avLGiifgI~~qll~ 91 (161)
T PF13042_consen 50 IDLYCKNTYDKKFSKVLI---KTNVISFNFAVLGIIFGIIHQLLG 91 (161)
T ss_pred HHHhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444333 345555666 799999999999999999988874
No 19
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=70.69 E-value=13 Score=23.73 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC
Q 033601 46 GVMLTTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 46 ~l~Lti~t~i~~p~t~i~g~fGMN~ 70 (115)
|.+|+.++.++.....+.+++...+
T Consensus 5 E~iL~~Ig~il~il~~~~~l~~~~~ 29 (100)
T PF13273_consen 5 EKILGWIGGILGILFGFFGLLIGFF 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888877776655555554444
No 20
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=70.60 E-value=4.4 Score=25.33 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033601 7 FVQVDGIVNKLSTLREYVDDTEDYINIM 34 (115)
Q Consensus 7 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 34 (115)
.+.++++.++.+++.++++.+|..++..
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILdae 68 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILDAE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677888888899989998888776543
No 21
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=70.59 E-value=23 Score=25.65 Aligned_cols=23 Identities=9% Similarity=0.262 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
.+.+....+++.-++..+-.+ ++
T Consensus 149 ~~~~~~~~~~~w~~~~~~~~~-lp 171 (206)
T PF06570_consen 149 YILISVLAMVLWIVIFVLTSF-LP 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cc
Confidence 355555555555555555555 54
No 22
>PF06238 Borrelia_lipo_2: Borrelia burgdorferi BBR25 lipoprotein; InterPro: IPR009358 This entry consists of a number of lipoproteins conserved in Borrelia species [].
Probab=70.18 E-value=16 Score=24.26 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHhHH
Q 033601 31 INIMLDDKQNNLLQM 45 (115)
Q Consensus 31 ~~~~l~~~~N~~m~~ 45 (115)
+-+.+..+||++|+-
T Consensus 86 iIs~LkakRNkiMke 100 (111)
T PF06238_consen 86 IISSLKAKRNKIMKE 100 (111)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666899999983
No 23
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=70.16 E-value=12 Score=30.13 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 033601 27 TEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 27 ~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~ 70 (115)
.+++.+..++++...-+...++-|.+++.+=+.--..=+.||++
T Consensus 17 v~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~ 60 (358)
T PF10272_consen 17 VQNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCF 60 (358)
T ss_pred HHHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeE
Confidence 56677788877777777777778887766554444444668887
No 24
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=68.33 E-value=56 Score=25.61 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCchHH
Q 033601 8 VQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNN-LLQMGVMLTTATLVISAFIALVGVFGMNITIELFDHTKARMPEFL 86 (115)
Q Consensus 8 ~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~-~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~ 86 (115)
.+++++.+.++++.++.+...|.++..+|...+. -.+.|-++-++|++-+...-.+=+-|. ....+ +.-|..-|
T Consensus 214 ~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagi-yGMNf----~~mP~~~~ 288 (316)
T PRK11085 214 EQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASS-YGMNF----EFMPELKW 288 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccccc----CCCCCCCC
Confidence 4567788889999999999999999888854433 133334888888888888888888886 33322 44554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033601 87 WTVAGGTIGTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~fk~k~w 112 (115)
-... ..+++++.++....+..=|+
T Consensus 289 ~~g~--~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 289 SFGY--PGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred cHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3322 22355554455555554443
No 25
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.33 E-value=47 Score=24.76 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=12.2
Q ss_pred hHHHHHHHhHHHHHHHHHHHHH
Q 033601 35 LDDKQNNLLQMGVMLTTATLVI 56 (115)
Q Consensus 35 l~~~~N~~m~~~l~Lti~t~i~ 56 (115)
.+..+|..+. .++++|.+.
T Consensus 170 ~nesTNsrv~---~fSi~Sl~v 188 (210)
T KOG1691|consen 170 TNESTNSRVA---WFSILSLVV 188 (210)
T ss_pred hhhhhhhHHH---HHHHHHHHH
Confidence 3467788887 566666543
No 26
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=67.39 E-value=52 Score=24.94 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 3 LEAYFVQVDGIVNKLSTLR----EYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFG 67 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~----~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fG 67 (115)
+|.|+.+++++.+++|... ..-+.+++.+...+..-..-.+. .+..+..+.+|+.+.+=+.|
T Consensus 145 l~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~ai~~al~P~i~---~m~~vGlVslPGmMtG~IL~ 210 (250)
T PF03649_consen 145 LERFYSELRERRDEIEALLALGATPREAVRPFIRRAIRAALIPTIN---SMKTVGLVSLPGMMTGQILG 210 (250)
T ss_pred HHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHhHhHHH---hhhhhheeechHHHHHHHHc
Confidence 5777888887777776553 12333344444444333333444 35566777778876655554
No 27
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=67.01 E-value=14 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 033601 13 IVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 13 ~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
+..|++++..+||++|..+....
T Consensus 26 I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 26 ILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 55667777777777777665544
No 28
>PHA03231 glycoprotein BALF4; Provisional
Probab=63.98 E-value=50 Score=29.51 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 033601 54 LVISAFIALVGVF 66 (115)
Q Consensus 54 ~i~~p~t~i~g~f 66 (115)
+.-+..++|+|+.
T Consensus 685 v~ga~~SiVsG~~ 697 (829)
T PHA03231 685 VAGAVGSIVSGVI 697 (829)
T ss_pred HHHHHHHHHHHHH
Confidence 3334455555554
No 29
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=63.94 E-value=29 Score=20.71 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhcc
Q 033601 97 IFLYAAAIAWYKYKRL 112 (115)
Q Consensus 97 ~~~~~~~~~~fk~k~w 112 (115)
.....+...|+|++||
T Consensus 58 ~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 58 LTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3344467788888887
No 30
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=63.90 E-value=7.6 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 033601 7 FVQVDGIVNKLSTLREYVDDTEDYINI 33 (115)
Q Consensus 7 ~~~~~~~~~~~~~l~~~i~~~~~~~~~ 33 (115)
.+.++++.++++.+.++++.+|..++.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777888888888888888877654
No 31
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=63.53 E-value=26 Score=24.03 Aligned_cols=10 Identities=10% Similarity=-0.104 Sum_probs=4.2
Q ss_pred CCchHHHHHH
Q 033601 81 RMPEFLWTVA 90 (115)
Q Consensus 81 ~~~~f~~~~~ 90 (115)
.|.+.+|.+.
T Consensus 17 wP~a~GWwll 26 (146)
T PF14316_consen 17 WPLAPGWWLL 26 (146)
T ss_pred CCccHHHHHH
Confidence 4444444433
No 32
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=62.27 E-value=14 Score=18.63 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 033601 102 AAIAWYKYK 110 (115)
Q Consensus 102 ~~~~~fk~k 110 (115)
+.+.+.|||
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 344444444
No 33
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=61.08 E-value=36 Score=20.92 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLD 36 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~ 36 (115)
.+.|+.+++++...++.+++.++.+..+....+.
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~ 35 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILS 35 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999998888888888766663
No 34
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=60.40 E-value=42 Score=24.70 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhH
Q 033601 4 EAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQ 44 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~ 44 (115)
++|.+.++++.+++.+.++.+.++...+.. -.+++++
T Consensus 155 qsY~K~i~e~~dKA~ei~qqm~~~~~~lv~----~~~qIl~ 191 (195)
T PRK15361 155 QSYNKSLTEIMEKATEIMQQIIGVGSSLVT----VLAEILR 191 (195)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 689999999999999998877776655543 3344555
No 35
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=59.89 E-value=22 Score=25.15 Aligned_cols=20 Identities=5% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 033601 48 MLTTATLVISAFIALVGVFG 67 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fG 67 (115)
+.++++++.+..-+++|+-|
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555
No 36
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=59.80 E-value=47 Score=23.06 Aligned_cols=62 Identities=18% Similarity=0.242 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHhHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 2 LLEAYFVQVDGIVNKLST----------LREYVDDTEDYINIMLDDKQNN--LLQMGVMLTTATLVISAFIALVGVFG 67 (115)
Q Consensus 2 lLe~Y~~~~~~~~~~~~~----------l~~~i~~~~~~~~~~l~~~~N~--~m~~~l~Lti~t~i~~p~t~i~g~fG 67 (115)
|-..|.+|-....+.+.. ..+..+..++.++..++..|++ +-. +.-.++.=..+..++|-|-
T Consensus 33 Ltg~Y~~DT~~Vi~tlr~~i~lpkd~p~~~~a~~~ar~~indyvsrYRr~~~v~g----~~SFttm~TALNsLAGHY~ 106 (135)
T TIGR03044 33 LTGDYVEDTLAVIQTLREAIDLPDDDPNKSEAQAEARQLINDYISRYRRRPRVNG----LSSFTTMQTALNSLAGHYK 106 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcCC----cccHHHHHHHHHHHHHHhc
Confidence 346788888887777643 3567788899999999865544 554 8888888888999999874
No 37
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=59.70 E-value=9.7 Score=25.83 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033601 46 GVMLTTATLVISAFIALVGVF 66 (115)
Q Consensus 46 ~l~Lti~t~i~~p~t~i~g~f 66 (115)
++..+.+|.++...|++.+++
T Consensus 31 nliiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 31 NLIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred EeehHHHHHHHHHHHHhheEE
Confidence 347888888888888887764
No 38
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=59.41 E-value=36 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
++.|+.+++++-..+..+++.++.++.+....+
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l 35 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELL 35 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999888888888877666
No 39
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=59.39 E-value=85 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcc
Q 033601 51 TATLVISAFIALVGVFGMNITIEL 74 (115)
Q Consensus 51 i~t~i~~p~t~i~g~fGMN~~~~~ 74 (115)
.++.+.+...=++++.|=++-.|+
T Consensus 107 ~~ssIlLl~~Siss~iG~YiLapl 130 (299)
T PF05884_consen 107 SWSSILLLGFSISSFIGGYILAPL 130 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777778888888886554
No 40
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=59.38 E-value=34 Score=23.36 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 033601 49 LTTATLVISAFIALVGVFGMNITIELFDHTKARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLLE 114 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl~ 114 (115)
.+..+.+.+...++..+.|.=+..+ .+..+-++ +.++.+..-.|++||+|+.
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~------aNVGGVGi--------AMlLLi~~~~~l~k~G~l~ 57 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVK------ANVGGVGI--------AMILLIISKELLAKRGHLP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC------cccchHHH--------HHHHHHHHHHHHHHcCCCC
Confidence 4667888888888888888877653 34332222 2333345677899999984
No 41
>PTZ00370 STEVOR; Provisional
Probab=59.01 E-value=16 Score=28.49 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 48 MLTTATLVISAFIAL 62 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i 62 (115)
.||.+.+.++-.+.+
T Consensus 185 fLT~IGLaAAKaAAi 199 (296)
T PTZ00370 185 LLTLIGLAAAKAAAI 199 (296)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666555555
No 42
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=59.01 E-value=82 Score=24.37 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCc
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNL-LQMGVMLTTATLVISAFIALVGVFGMNITIELFDHTKARMP 83 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~-m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~ 83 (115)
..-..++++...+.++.+.++..++.++..+|...+.+ .++|-.+-++|++-+...-.|=+.|- +.+.+ +.-|.
T Consensus 217 ~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagi-yGMNf----~~mPe 291 (322)
T COG0598 217 EDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGF-YGMNF----KGMPE 291 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcc-cccCC----CCCcC
Confidence 34456788889999999999999999998887443321 22223888888877777777766663 23322 33443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 84 EFLWTVAGGTIGTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 84 ~f~~~~~~~~~~~~~~~~~~~~~fk~k~ 111 (115)
.-|-.... .++++..++......+-|
T Consensus 292 l~~~~Gy~--~~l~~m~~~~~~~~~~fr 317 (322)
T COG0598 292 LDWPYGYP--IALILMLLLALLLYLYFR 317 (322)
T ss_pred CCCcccHH--HHHHHHHHHHHHHHHHHH
Confidence 33332222 236555555666565444
No 43
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=58.99 E-value=15 Score=25.90 Aligned_cols=13 Identities=8% Similarity=0.411 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 033601 4 EAYFVQVDGIVNK 16 (115)
Q Consensus 4 e~Y~~~~~~~~~~ 16 (115)
+.|+++++...++
T Consensus 4 ~efL~~L~~~L~~ 16 (181)
T PF08006_consen 4 NEFLNELEKYLKK 16 (181)
T ss_pred HHHHHHHHHHHHc
Confidence 4555555555543
No 44
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.87 E-value=23 Score=24.12 Aligned_cols=6 Identities=0% Similarity=-0.285 Sum_probs=2.6
Q ss_pred HHHHHH
Q 033601 85 FLWTVA 90 (115)
Q Consensus 85 f~~~~~ 90 (115)
.+++++
T Consensus 67 ~~Ii~g 72 (122)
T PF01102_consen 67 IGIIFG 72 (122)
T ss_dssp HHHHHH
T ss_pred eehhHH
Confidence 444444
No 45
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=58.55 E-value=17 Score=28.39 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033601 48 MLTTATLVISAFIALV 63 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~ 63 (115)
.||.+.+.++-.+.++
T Consensus 185 ~LT~IGLaAAKaAAia 200 (295)
T TIGR01478 185 LLGNIGIAAAKTAAIE 200 (295)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4666666655555553
No 46
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=57.95 E-value=75 Score=26.10 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhH---HH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 033601 10 VDGIVNKLSTLREYVDDTEDYINIMLD---DK-QNNLLQMGVMLTTATLVISAFIALVGVFGMNITIEL 74 (115)
Q Consensus 10 ~~~~~~~~~~l~~~i~~~~~~~~~~l~---~~-~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~ 74 (115)
++....++++..+.++.++|.+...-| -+ -|+-.. |--+-+.+..+|+..++|+.=...-+
T Consensus 306 LEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~----LiqleL~Lt~gT~~~s~~~~va~ifG 370 (414)
T KOG2662|consen 306 LEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNE----LIQLELLLTIGTFCLSVFSVVAGIFG 370 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567788888888888888876665 22 244444 77788889999999999998665544
No 47
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.95 E-value=51 Score=26.84 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHH-----------HhHHHHHHHhHHH
Q 033601 13 IVNKLSTLREYVDDTEDYINI-----------MLDDKQNNLLQMG 46 (115)
Q Consensus 13 ~~~~~~~l~~~i~~~~~~~~~-----------~l~~~~N~~m~~~ 46 (115)
|.+.+..|++.+.+++|.++- .+++-+|++-|++
T Consensus 274 Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 274 HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556677777777777765433 3347789999988
No 48
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=55.37 E-value=28 Score=23.94 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033601 82 MPEFLWTVAGGTIGTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~w 112 (115)
...+.++..++..+++.++.+++.|.|-||.
T Consensus 41 ~~~~lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 41 DNEYLYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777776667777777788889888764
No 49
>PRK11677 hypothetical protein; Provisional
Probab=54.32 E-value=70 Score=22.10 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhHHHHHH
Q 033601 3 LEAYFVQVDGIVNKLSTLR-EYVDDTEDYIN 32 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~-~~i~~~~~~~~ 32 (115)
||.|-+++.+|..+-.++. ...++.+++++
T Consensus 45 le~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~ 75 (134)
T PRK11677 45 LEEYRQELVSHFARSAELLDTMAKDYRQLYQ 75 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888887765553 33445555544
No 50
>PRK13682 hypothetical protein; Provisional
Probab=53.10 E-value=16 Score=21.14 Aligned_cols=17 Identities=12% Similarity=0.352 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 033601 52 ATLVISAFIALVGVFGM 68 (115)
Q Consensus 52 ~t~i~~p~t~i~g~fGM 68 (115)
++.+|...++++|++|.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57789999999999996
No 51
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.13 E-value=47 Score=22.28 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLD 36 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~ 36 (115)
++.|+..++++...+..++..++.++.+....++
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t 34 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLT 34 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999988888888888887777665553
No 52
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=51.89 E-value=73 Score=22.07 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
.|..++++++. .+-+|.+.++
T Consensus 31 ~lg~~a~~iA~---~a~~~d~~~~ 51 (162)
T PF06703_consen 31 ALGYLAVIIAG---FAFFYDYKYP 51 (162)
T ss_pred HHHHHHHHHHH---HHHHhhhcCC
Confidence 46666655544 4445666554
No 53
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=51.88 E-value=86 Score=22.42 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 033601 50 TTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 50 ti~t~i~~p~t~i~g~fGMN~ 70 (115)
.+.+..++.+++.+|..+-=+
T Consensus 22 ~i~~~l~Ll~av~~~~~~~~~ 42 (161)
T COG3402 22 WIPIALVLLIAVAAGVLLYFV 42 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhee
Confidence 344555666666666666554
No 54
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=51.29 E-value=70 Score=21.19 Aligned_cols=53 Identities=15% Similarity=-0.048 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 033601 52 ATLVISAFIALVGVFGMNITIELFDHTKARMPEFLWTVAGGTIGTIFLYAAAIAWYK 108 (115)
Q Consensus 52 ~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk 108 (115)
++.+..-..+++++.+-|.-.+.- .+-+|++|.....+. .+..++.+.++.+.
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~~~--~~fDpyPFilLnl~l--S~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAPPR--PAFDPYPFILLNLVL--SLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc--CCCCCccHHHHHHHH--HHHHHHHHHHHHHH
Confidence 456777788899999999954320 023666676655532 23334444444443
No 55
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=51.26 E-value=86 Score=22.23 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 033601 45 MGVMLTTATLVISAFIALVGVFGM 68 (115)
Q Consensus 45 ~~l~Lti~t~i~~p~t~i~g~fGM 68 (115)
+|..||+++=+...--+..|+.+|
T Consensus 17 iD~~lT~~aW~gfi~l~~~~~~~~ 40 (153)
T PRK14584 17 IDIILTALAWFGFLFLLVRGLLEM 40 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888889999999
No 56
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=50.71 E-value=36 Score=20.90 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=6.9
Q ss_pred HHHHHHHHHhc
Q 033601 101 AAAIAWYKYKR 111 (115)
Q Consensus 101 ~~~~~~fk~k~ 111 (115)
...=+|||+|+
T Consensus 49 ~ltN~YFK~k~ 59 (68)
T PF04971_consen 49 YLTNLYFKIKE 59 (68)
T ss_pred HHhHhhhhhhH
Confidence 34556788764
No 57
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=48.76 E-value=78 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Q 033601 37 DKQNNLLQMGVMLTTATLVISAFIALVGVFGM-NIT 71 (115)
Q Consensus 37 ~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGM-N~~ 71 (115)
.-.||.+++ ++..++.++.......-.|.+ |..
T Consensus 73 lyKnR~lQ~--~L~~~nill~~~~~~~~~~~~~~~~ 106 (149)
T PF14126_consen 73 LYKNRKLQI--RLCVLNILLNVGLYGLFAYFSLNLS 106 (149)
T ss_pred ccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777776 788888877775554444444 443
No 58
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=48.27 E-value=62 Score=22.14 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 033601 49 LTTATLVISAFIALVGVFGMNITIELFDHTKARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLLE 114 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl~ 114 (115)
.+..+.+.+...++.-+.|.=+..+ .+..+-++ +.++.+...-|++||+++.
T Consensus 6 vAlLa~C~l~G~~~GdlLG~llGV~------aNVGGVGi--------AMlLLI~~~~~l~k~g~l~ 57 (125)
T PF03817_consen 6 VALLAICTLAGVFLGDLLGALLGVK------ANVGGVGI--------AMLLLIFARLWLQKKGLLS 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC------cccccHHH--------HHHHHHHHHHHHHHcCCCC
Confidence 5677888888888888888877652 34332222 2333345677899998874
No 59
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=47.31 E-value=73 Score=20.24 Aligned_cols=7 Identities=29% Similarity=0.619 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 033601 49 LTTATLV 55 (115)
Q Consensus 49 Lti~t~i 55 (115)
+.+++++
T Consensus 21 ~~~~~i~ 27 (112)
T PF14015_consen 21 LRIASII 27 (112)
T ss_pred HHHHHHH
Confidence 3333433
No 60
>PLN00061 photosystem II protein Psb27; Provisional
Probab=47.01 E-value=1e+02 Score=21.82 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHhHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhc--
Q 033601 2 LLEAYFVQVDGIVNKLS-----------TLREYVDDTEDYINIMLDDKQN-NLLQMGVMLTTATLVISAFIALVGVFG-- 67 (115)
Q Consensus 2 lLe~Y~~~~~~~~~~~~-----------~l~~~i~~~~~~~~~~l~~~~N-~~m~~~l~Lti~t~i~~p~t~i~g~fG-- 67 (115)
|-..|.+|..+..+.+. ..++..+..++.|+..++.-|+ .-.. -+...+++-..+.-++|+|-
T Consensus 52 Lpg~Y~kdtr~VV~tLresl~l~p~D~~~~~~aa~~Ake~IndYisryR~~~~V~---gl~SfttMqtALnsLAghYssy 128 (150)
T PLN00061 52 LPKAYLKSAREVVKTLRESLKEDPKDEAKFRRTADAAKESIREYLGNWRGQKTVA---EEESYVELEKAIRSLASFYSKA 128 (150)
T ss_pred CchHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHhcCCcccc---ccchHHHHHHHHHHHHHHHHhc
Confidence 45689888888776653 2356678888899988885443 3333 47777777777888888874
Q ss_pred -CCCCCc
Q 033601 68 -MNITIE 73 (115)
Q Consensus 68 -MN~~~~ 73 (115)
=|-+.|
T Consensus 129 GpnrPLP 135 (150)
T PLN00061 129 GPSAPLP 135 (150)
T ss_pred CCCCCCC
Confidence 444443
No 61
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=46.99 E-value=56 Score=20.35 Aligned_cols=29 Identities=21% Similarity=-0.103 Sum_probs=18.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWY 107 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~f 107 (115)
..+|++|...+..++.-..+++..+.+.+
T Consensus 16 AkdP~~Fl~~vll~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 16 AKDPYEFLTTVLLILTPLFIISAVLSWKL 44 (74)
T ss_pred HcChHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46888898777766555555554444444
No 62
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=46.90 E-value=36 Score=30.45 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHH-------------------HHHHHHHHHHHHHHHHHHHhcCC
Q 033601 9 QVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMG-------------------VMLTTATLVISAFIALVGVFGMN 69 (115)
Q Consensus 9 ~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~-------------------l~Lti~t~i~~p~t~i~g~fGMN 69 (115)
++-++..++..++=.+.++.|.+..+.+...-+++|+| +.=++.+++-..+.|+.|-.|==
T Consensus 861 hLvgiIaklk~i~IevTStwEsIKdQierakaeLLRLDlHEGD~p~WikqL~~At~DvWPaaA~~~~~iGnfL~~ta~gi 940 (981)
T PF03408_consen 861 HLVGIIAKLKGIQIEVTSTWESIKDQIERAKAELLRLDLHEGDYPAWIKQLASATKDVWPAAASFLSGIGNFLSGTAGGI 940 (981)
T ss_pred hHHHHHHHhcCcEEEEeehHhhHHHHHHHHHHHHheeecccCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 45556666655544555556666666655555555554 33456667777777776555433
Q ss_pred C
Q 033601 70 I 70 (115)
Q Consensus 70 ~ 70 (115)
|
T Consensus 941 F 941 (981)
T PF03408_consen 941 F 941 (981)
T ss_pred c
Confidence 3
No 63
>PLN00064 photosystem II protein Psb27; Provisional
Probab=45.91 E-value=87 Score=22.49 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHhHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 033601 4 EAYFVQVDGIVNKLSTL----------REYVDDTEDYINIMLDDKQN-NLLQMGVMLTTATLVISAFIALVGVF 66 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l----------~~~i~~~~~~~~~~l~~~~N-~~m~~~l~Lti~t~i~~p~t~i~g~f 66 (115)
+.|-+|-.++.+++.+. .+....+++.+|...+..|+ .-.. -+.-+++.-..++-++|-|
T Consensus 64 g~Y~~DT~aVi~~lr~tI~L~~ddp~~a~a~aeaR~~iNdyvSrYRr~~~v~---Gl~SFttMyTALNaLAGHY 134 (166)
T PLN00064 64 EEYVKETKDVIGKVRSTINMDKTDPNVADAVAELRETSNSWVAKYRREKALL---GRPSFRDMYSALNAVSGHY 134 (166)
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCccc---CcccHHHHHHHHHHHHHHh
Confidence 35777777777766433 45677788888888884433 3332 4778888888899999988
No 64
>PF15431 TMEM190: Transmembrane protein 190
Probab=45.41 E-value=25 Score=23.81 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033601 80 ARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 80 ~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~w 112 (115)
.+.|+..|..++.+ .++..+..+||.||++.
T Consensus 59 KHmWaL~wtC~gll--~Li~~iclFWWAkRrd~ 89 (134)
T PF15431_consen 59 KHMWALGWTCGGLL--LLICSICLFWWAKRRDM 89 (134)
T ss_pred HHHHHHHHHHHhHH--HHHHHHHHHHHHHHhch
Confidence 46677777776543 22333457889999886
No 65
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=44.58 E-value=1.2e+02 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 47 VMLTTATLVISAFIA 61 (115)
Q Consensus 47 l~Lti~t~i~~p~t~ 61 (115)
+.|++++.+.+..+.
T Consensus 26 lvLgvVs~~iL~F~~ 40 (183)
T PF12263_consen 26 LVLGVVSAVILLFAN 40 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 478888877666654
No 66
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=44.50 E-value=94 Score=20.75 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCCC
Q 033601 57 SAFIALVGVFGMNIT 71 (115)
Q Consensus 57 ~p~t~i~g~fGMN~~ 71 (115)
-.+++++.++||+..
T Consensus 91 wtgal~a~llg~~~~ 105 (121)
T PF06695_consen 91 WTGALIASLLGMDKK 105 (121)
T ss_pred HHHHHHHHHhCCCHH
Confidence 346899999999975
No 67
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=44.48 E-value=14 Score=28.48 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 033601 86 LWTVAGGTIGTIFLYAAAIAWYKYK 110 (115)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~fk~k 110 (115)
.+++|+.+++.+++.++.|.+.|||
T Consensus 274 PIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 274 PIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHhheeEecc
Confidence 3444444444444444455555554
No 68
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=44.37 E-value=62 Score=22.70 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINI 33 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~ 33 (115)
+..++++++++.+..+++++.++.+++....
T Consensus 48 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 48 LNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666665555443
No 69
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=44.28 E-value=55 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.4
Q ss_pred HHHHHHHHHhccc
Q 033601 101 AAAIAWYKYKRLL 113 (115)
Q Consensus 101 ~~~~~~fk~k~wl 113 (115)
.+...+.++|+..
T Consensus 22 li~~~~~~~r~~~ 34 (45)
T TIGR03141 22 LILWSLLDRRRLL 34 (45)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555543
No 70
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.94 E-value=1.1e+02 Score=21.29 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHhH
Q 033601 3 LEAYFVQVDGIVNKL-STLREYVDDTEDYINIMLD 36 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~-~~l~~~i~~~~~~~~~~l~ 36 (115)
|+.|-+++.+|..+- +.++....+.++++.-.-+
T Consensus 50 ld~~rqel~~HFa~sAeLlktl~~dYqklyqHmA~ 84 (138)
T COG3105 50 LDEYRQELVKHFARSAELLKTLAQDYQKLYQHMAK 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888887664 4445566777777765444
No 71
>PRK14756 hypothetical protein; Provisional
Probab=43.94 E-value=32 Score=17.46 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033601 46 GVMLTTATLVISAFIALV 63 (115)
Q Consensus 46 ~l~Lti~t~i~~p~t~i~ 63 (115)
|++++.+|++.+..-.|+
T Consensus 4 dLK~SL~tTvvaL~~Iva 21 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVA 21 (29)
T ss_pred chhhhHHHHHHHHHHHHH
Confidence 344555555444444333
No 72
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=43.42 E-value=1.9e+02 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 033601 47 VMLTTATLVISAFIALVGVFGMNITIEL 74 (115)
Q Consensus 47 l~Lti~t~i~~p~t~i~g~fGMN~~~~~ 74 (115)
++|+..++++..-+.|+ |+..|+
T Consensus 395 iiLalm~VlLvfVSTIa-----~~v~PL 417 (455)
T KOG3850|consen 395 IILALMTVLLVFVSTIA-----NCVSPL 417 (455)
T ss_pred HHHHHHHHHHHHHHHHH-----hhccHH
Confidence 35555555555555444 667776
No 73
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=43.11 E-value=5 Score=26.07 Aligned_cols=8 Identities=0% Similarity=-0.334 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 033601 103 AIAWYKYK 110 (115)
Q Consensus 103 ~~~~fk~k 110 (115)
.|++++||
T Consensus 87 ~w~f~~r~ 94 (96)
T PTZ00382 87 CWWFVCRG 94 (96)
T ss_pred hheeEEee
Confidence 34444343
No 74
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=42.81 E-value=1e+02 Score=20.75 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHhH--HHHHHHhHHHHHHHHHHHHHHHHHH----HHHHhcCCC
Q 033601 4 EAYFVQVDGIVNKLSTLREYVDDTED----YINIMLD--DKQNNLLQMGVMLTTATLVISAFIA----LVGVFGMNI 70 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l~~~i~~~~~----~~~~~l~--~~~N~~m~~~l~Lti~t~i~~p~t~----i~g~fGMN~ 70 (115)
-.|-.+...+.+++..+.+..++..+ ....+++ .+|=+.++--..+...|.++.-.+. +.++++.|.
T Consensus 17 ~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~ 93 (130)
T PF11026_consen 17 LVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDL 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 34445555555666555544433111 1123333 4454455544445555554444433 334454444
No 75
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=42.45 E-value=43 Score=20.36 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCCCC
Q 033601 57 SAFIALVGVFGMNITI 72 (115)
Q Consensus 57 ~p~t~i~g~fGMN~~~ 72 (115)
....++.|.+|+=++.
T Consensus 32 ~~vm~l~Gm~~lviKL 47 (65)
T PF09583_consen 32 FAVMFLGGMFGLVIKL 47 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456778888888763
No 76
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.08 E-value=1.9e+02 Score=23.50 Aligned_cols=20 Identities=0% Similarity=-0.203 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCCCCcc
Q 033601 55 VISAFIALVGVFGMNITIEL 74 (115)
Q Consensus 55 i~~p~t~i~g~fGMN~~~~~ 74 (115)
.+..|.+..-+=|+|-+.|.
T Consensus 182 ~~VvP~f~~if~~~~~~LP~ 201 (397)
T COG1459 182 IFVVPQFAEIFESLGAELPA 201 (397)
T ss_pred HHHhccHHHHHhhcCCCCcH
Confidence 34455555556667877765
No 77
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=42.02 E-value=83 Score=19.43 Aligned_cols=32 Identities=9% Similarity=0.087 Sum_probs=15.7
Q ss_pred CCchHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Q 033601 81 RMPEFLWTVAGGTIGTIFLYA-AAIAWYKYKRL 112 (115)
Q Consensus 81 ~~~~f~~~~~~~~~~~~~~~~-~~~~~fk~k~w 112 (115)
+++.+|..++..+..+.-.++ ..+..+++|.|
T Consensus 42 ~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 42 HGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred CCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 444566555544333333333 34445666766
No 78
>COG5487 Small integral membrane protein [Function unknown]
Probab=40.89 E-value=34 Score=19.90 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 033601 52 ATLVISAFIALVGVFGMN 69 (115)
Q Consensus 52 ~t~i~~p~t~i~g~fGMN 69 (115)
++++|...++|+|.+|--
T Consensus 4 waliFlvialIa~~lGFg 21 (54)
T COG5487 4 WALIFLVIALIAGALGFG 21 (54)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 578899999999999853
No 79
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.86 E-value=62 Score=17.60 Aligned_cols=10 Identities=20% Similarity=0.032 Sum_probs=4.8
Q ss_pred HHHHHHHHhc
Q 033601 102 AAIAWYKYKR 111 (115)
Q Consensus 102 ~~~~~fk~k~ 111 (115)
..++.+.+||
T Consensus 23 ~~~YaCcykk 32 (38)
T PF02439_consen 23 MFYYACCYKK 32 (38)
T ss_pred HHHHHHHHcc
Confidence 3444455554
No 80
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.78 E-value=92 Score=25.47 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 3 LEAYFVQVDG---IVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFG 67 (115)
Q Consensus 3 Le~Y~~~~~~---~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fG 67 (115)
||.+|..+.+ +-+|+..+.+.++...|..+...++-.|+-+- .|+-+=+++...-++.++|+
T Consensus 325 Le~iY~~~r~yleI~qRv~vLN~kl~~i~~~~~~l~e~ln~r~~~---~LEWiIIiLI~~eV~i~i~~ 389 (399)
T KOG2861|consen 325 LEPIYEATRRYLEIGQRVNVLNYKLKVIEDLLDILQENLNERHSE---RLEWIIIILIAFEVAIEIYQ 389 (399)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc---ceehhhHHHHHHHHHHHHHH
Confidence 4555555544 45788888888888888888777765555555 45555555555555555553
No 81
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=40.67 E-value=1e+02 Score=24.57 Aligned_cols=9 Identities=0% Similarity=-0.381 Sum_probs=4.9
Q ss_pred CCCchHHHH
Q 033601 80 ARMPEFLWT 88 (115)
Q Consensus 80 ~~~~~f~~~ 88 (115)
+-+|++|+.
T Consensus 50 ~~~WGl~I~ 58 (394)
T PRK10881 50 GYPWGIWIA 58 (394)
T ss_pred CCCchHHHH
Confidence 355566644
No 82
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=40.58 E-value=37 Score=20.98 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC
Q 033601 49 LTTATLVISAFIALVGVFGMNITI 72 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fGMN~~~ 72 (115)
.+.+-.+++..+++.|++=-++..
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~~~ 36 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSFSY 36 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667788888888777654
No 83
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=40.56 E-value=1e+02 Score=20.14 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYINIM 34 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 34 (115)
.||..+.|.+.++.+-++.+|.+++-..-.
T Consensus 60 ~~~E~lQdkL~qi~eAR~AlDalR~eH~~k 89 (96)
T PF12210_consen 60 VYYEGLQDKLAQIKEARAALDALREEHREK 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666554433
No 84
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=40.52 E-value=87 Score=26.77 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~ 70 (115)
++...+.++...+++..++|.|+
T Consensus 218 ~~~a~~~~l~~~~~~~~~~gt~~ 240 (576)
T TIGR00353 218 SFKAWTLLLAILAFSLSLLGTFI 240 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888889999999997
No 85
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=39.95 E-value=1.6e+02 Score=22.25 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNN-LLQMGVMLTTATLVISAFIALVGVFGM 68 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~-~m~~~l~Lti~t~i~~p~t~i~g~fGM 68 (115)
.--..++++.++++++.+.++..+|..+..+|...|. -.++|-.+-.+|++-+...-.+=+=|.
T Consensus 213 ~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGi 277 (318)
T TIGR00383 213 EVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGI 277 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888889999999999999988888744332 123333888888888888888877776
No 86
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=39.80 E-value=1.1e+02 Score=24.44 Aligned_cols=21 Identities=5% Similarity=-0.009 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 033601 49 LTTATLVISAFIALVGVFGMN 69 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fGMN 69 (115)
+.+++++++.++++...+.+.
T Consensus 400 ~~~~~~i~~i~~~~~~~~~~~ 420 (511)
T PF09972_consen 400 LIILGIILLILGFILLIVLFI 420 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433333
No 87
>COG4803 Predicted membrane protein [Function unknown]
Probab=39.57 E-value=24 Score=25.20 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhH------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 033601 16 KLSTLREYVDDTEDYINIMLD------------DKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITI 72 (115)
Q Consensus 16 ~~~~l~~~i~~~~~~~~~~l~------------~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~ 72 (115)
+.++.++.+..++..+-+.++ -+.|+.|. +|.+.+ +-.++|||=+..
T Consensus 16 ~Aeev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~N----lt~aGa------~sGafWG~LiGl 74 (170)
T COG4803 16 KAEEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMN----LTGAGA------VSGAFWGMLIGL 74 (170)
T ss_pred hHHHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhh----hhhhcc------ccccHHHHHHHH
Confidence 456666666666665555554 47788887 554433 337788887654
No 88
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.11 E-value=1.2e+02 Score=20.58 Aligned_cols=10 Identities=10% Similarity=0.258 Sum_probs=4.5
Q ss_pred HHHHHHhcCC
Q 033601 60 IALVGVFGMN 69 (115)
Q Consensus 60 t~i~g~fGMN 69 (115)
++++|+|+-.
T Consensus 92 ~~~~~~~~~~ 101 (142)
T PF11712_consen 92 VFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHH
Confidence 3444444543
No 89
>PRK09546 zntB zinc transporter; Reviewed
Probab=39.08 E-value=1.8e+02 Score=22.39 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033601 8 VQVDGIVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 8 ~~~~~~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
..++|..+++.+..+.++..++..+...
T Consensus 222 ~~l~Dv~d~~~~~~~~l~~~~~~~~~l~ 249 (324)
T PRK09546 222 RRMQDIADRLGRGLDDLDACIARTAVLA 249 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444333
No 90
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=38.93 E-value=1.4e+02 Score=26.82 Aligned_cols=9 Identities=0% Similarity=0.139 Sum_probs=4.6
Q ss_pred HHHHH-hccc
Q 033601 105 AWYKY-KRLL 113 (115)
Q Consensus 105 ~~fk~-k~wl 113 (115)
+|+|+ |+|+
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 34444 6664
No 91
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=38.53 E-value=1e+02 Score=19.55 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
.+-++.+++++++.++|+.-+...
T Consensus 7 wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 7 WLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 466778888889999999877664
No 92
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=38.49 E-value=1.6e+02 Score=26.40 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhcCC
Q 033601 55 VISAFIALVGVFGMN 69 (115)
Q Consensus 55 i~~p~t~i~g~fGMN 69 (115)
+..|.+.+.++||+.
T Consensus 853 ~~~p~~~~~~~~~~~ 867 (902)
T PRK10517 853 IALPFSPLASYLQLQ 867 (902)
T ss_pred HHhhHHHHHHhhCCc
Confidence 344544567777775
No 93
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=38.02 E-value=73 Score=17.62 Aligned_cols=16 Identities=25% Similarity=0.050 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 033601 95 GTIFLYAAAIAWYKYK 110 (115)
Q Consensus 95 ~~~~~~~~~~~~fk~k 110 (115)
+++++..-..+||.||
T Consensus 21 ~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 21 FTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444455666665
No 94
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.18 E-value=1.5e+02 Score=23.28 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHhHHHHHH
Q 033601 22 EYVDDTEDYINIMLDDKQNN 41 (115)
Q Consensus 22 ~~i~~~~~~~~~~l~~~~N~ 41 (115)
+.|+.++++-+..-..++|-
T Consensus 76 ~~I~kL~~lAd~idk~Hk~~ 95 (313)
T PF05461_consen 76 EHIRKLRALADEIDKVHKDC 95 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444444433333333333
No 95
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=36.62 E-value=1.3e+02 Score=20.18 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=25.6
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 033601 1 MLLEAYFVQVDGIVNKLSTLREYVDDTEDYINI 33 (115)
Q Consensus 1 ~lLe~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~ 33 (115)
|..-.-.+++.++..+++++++.+...||....
T Consensus 1 m~~a~~~~q~~~l~~~v~~lRed~r~SEdrsa~ 33 (112)
T PF07439_consen 1 MIDAGLHQQLGTLNAEVKELREDIRRSEDRSAA 33 (112)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566788899999999999988888776543
No 96
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=36.28 E-value=63 Score=21.37 Aligned_cols=16 Identities=6% Similarity=-0.199 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 033601 95 GTIFLYAAAIAWYKYK 110 (115)
Q Consensus 95 ~~~~~~~~~~~~fk~k 110 (115)
.+++++++.....|.+
T Consensus 26 ~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 26 TALVTSLLIALAAKCP 41 (102)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 3344444444444443
No 97
>PF07043 DUF1328: Protein of unknown function (DUF1328); InterPro: IPR009760 This entry represents several hypothetical bacterial proteins of around 50 residues in length. The function of this family is unknown but is thought to be a membrane protein.; GO: 0005886 plasma membrane
Probab=35.70 E-value=22 Score=19.44 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhcC
Q 033601 55 VISAFIALVGVFGM 68 (115)
Q Consensus 55 i~~p~t~i~g~fGM 68 (115)
+|+..++++|.+|.
T Consensus 2 iFliiAliAg~lGF 15 (39)
T PF07043_consen 2 IFLIIALIAGVLGF 15 (39)
T ss_pred chHHHHHHHHHcCc
Confidence 57788999999986
No 98
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=35.67 E-value=36 Score=19.85 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 033601 40 NNLLQMGVMLTTATLVISAFIALVG 64 (115)
Q Consensus 40 N~~m~~~l~Lti~t~i~~p~t~i~g 64 (115)
++..| +++++.+++.+|..+|
T Consensus 2 ~~~~K----~~~~a~vl~~Lt~CTG 22 (56)
T PF13978_consen 2 KKFIK----IAVVAAVLATLTACTG 22 (56)
T ss_pred hhHHH----HHHHHHHHHHHhhccc
Confidence 44555 7777777777776666
No 99
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=35.54 E-value=58 Score=27.35 Aligned_cols=30 Identities=17% Similarity=-0.061 Sum_probs=13.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 82 MPEFLWTVAGGTIGTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~ 111 (115)
...+|-++.+.+...+++.++..+|.||||
T Consensus 520 ~~~~~~~~~i~~pp~~~l~~G~~~~~~Rrr 549 (552)
T TIGR03521 520 DRTTWQLINIGLPILLLLLFGLSFTYIRKR 549 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334554444333323344445555555544
No 100
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=35.44 E-value=62 Score=19.61 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCCCCC
Q 033601 57 SAFIALVGVFGMNITI 72 (115)
Q Consensus 57 ~p~t~i~g~fGMN~~~ 72 (115)
....+++|.||+=++.
T Consensus 31 ~~vm~l~Gm~~lviKL 46 (64)
T TIGR02975 31 VLFMALGGMFALMIKL 46 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455678888888863
No 101
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=35.24 E-value=1.5e+02 Score=20.26 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=30.6
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 31 INIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 31 ~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
..-.+.+-.|..+. .++.=|.++...++++.+++-|+.
T Consensus 93 ~ae~laeiiN~Fie---~is~Kt~~fll~~~~~~~~~~N~~ 130 (135)
T PF10104_consen 93 SAETLAEIINSFIE---PISWKTLIFLLLIILIWIFASNFA 130 (135)
T ss_pred HHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677788888 688889999999999999998875
No 102
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=35.09 E-value=3.3e+02 Score=24.25 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 48 MLTTATLVISAFIAL 62 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i 62 (115)
..|.+|+++....+.
T Consensus 683 I~TS~TTll~~l~L~ 697 (758)
T PRK13023 683 LLTSFVTFLAHVPLY 697 (758)
T ss_pred hHHHHHHHHHHHHHH
Confidence 366666665555544
No 103
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=34.98 E-value=79 Score=19.78 Aligned_cols=6 Identities=0% Similarity=0.219 Sum_probs=2.2
Q ss_pred HHHHhH
Q 033601 39 QNNLLQ 44 (115)
Q Consensus 39 ~N~~m~ 44 (115)
.|++.+
T Consensus 42 l~~i~~ 47 (99)
T PF04956_consen 42 LCKIID 47 (99)
T ss_pred HHHHHH
Confidence 333333
No 104
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=34.97 E-value=44 Score=29.66 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=17.7
Q ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Q 033601 82 MPEFLWTVA-GGTIGTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 82 ~~~f~~~~~-~~~~~~~~~~~~~~~~fk~k~w 112 (115)
+..|...+. +++++.+++..++++|+|||.+
T Consensus 271 HT~fLl~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 271 HTVFLLAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 444533333 3444444455567888999876
No 105
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=34.94 E-value=1.6e+02 Score=24.28 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-----------hHHHHHHHhHHHHHHH
Q 033601 13 IVNKLSTLREYVDDTEDYINIM-----------LDDKQNNLLQMGVMLT 50 (115)
Q Consensus 13 ~~~~~~~l~~~i~~~~~~~~~~-----------l~~~~N~~m~~~l~Lt 50 (115)
+.+.+..|++....+++.+.-+ +..-+|++.|+++..-
T Consensus 322 qQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 322 QQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665565555554322 2366788999886554
No 106
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=34.22 E-value=1.4e+02 Score=19.58 Aligned_cols=17 Identities=12% Similarity=0.513 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033601 4 EAYFVQVDGIVNKLSTL 20 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l 20 (115)
|.|....+.+.++++.+
T Consensus 8 e~~~~e~s~LIEqiE~~ 24 (100)
T PF06363_consen 8 EYYNIEMSELIEQIEAF 24 (100)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 45555556666555544
No 107
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=34.19 E-value=66 Score=20.98 Aligned_cols=9 Identities=11% Similarity=-0.064 Sum_probs=4.4
Q ss_pred CchHHHHHH
Q 033601 82 MPEFLWTVA 90 (115)
Q Consensus 82 ~~~f~~~~~ 90 (115)
.|.||.+.+
T Consensus 21 ~w~FWlv~~ 29 (102)
T PF11669_consen 21 LWYFWLVWV 29 (102)
T ss_pred HHHHHHHHH
Confidence 345665433
No 108
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=33.96 E-value=2e+02 Score=21.54 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 31 INIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFG 67 (115)
Q Consensus 31 ~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fG 67 (115)
.....+..-.+-+|....+=++|=++...++..++|-
T Consensus 64 ~~G~ht~~v~~~~~~G~~lFI~SE~~~F~s~f~a~f~ 100 (258)
T PF00510_consen 64 YEGHHTSFVQRGLKLGMWLFILSEVMFFASFFWAYFH 100 (258)
T ss_dssp HTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhcceeeeechhhhchHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555666777788899999999999988873
No 109
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=33.48 E-value=83 Score=24.20 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhc--C--CCCCcccccccCCCchHHHHHHHHH
Q 033601 49 LTTATLVISAFIALVGVFG--M--NITIELFDHTKARMPEFLWTVAGGT 93 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fG--M--N~~~~~~~~~~~~~~~f~~~~~~~~ 93 (115)
.|++..++....+++|+++ . |+..- -+++++.+++++++
T Consensus 7 ~t~iGii~g~~~i~~~i~~gg~~~~~~~~------~~~~s~lIV~GGt~ 49 (271)
T PRK06926 7 LTPVGIFLGITIVVLGVISNSGLSGFLSF------IDLTSILIVTGGLC 49 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHH------hhHhHHHHHHHHHH
Confidence 5777788877777777663 3 33321 25566777766654
No 110
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.64 E-value=96 Score=22.18 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 033601 50 TTATLVISAFIALVGVFGMN 69 (115)
Q Consensus 50 ti~t~i~~p~t~i~g~fGMN 69 (115)
+++++..+..+++++++|-+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35555566666666666654
No 111
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.42 E-value=1e+02 Score=19.35 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
..++++++++|.-.+.|+||-..+
T Consensus 14 w~ali~~i~l~vq~~~~~fg~~~~ 37 (84)
T PF04531_consen 14 WVALISAILLLVQQVGGLFGWGAD 37 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 589999999999999999998664
No 112
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.20 E-value=93 Score=17.10 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=6.4
Q ss_pred HHHHHHHHHhcc
Q 033601 101 AAAIAWYKYKRL 112 (115)
Q Consensus 101 ~~~~~~fk~k~w 112 (115)
.+...+.++|++
T Consensus 21 l~~~~~~~~r~~ 32 (46)
T PF04995_consen 21 LIVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHHH
Confidence 344555666554
No 113
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.74 E-value=2.3e+02 Score=21.58 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=25.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 033601 37 DKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITI 72 (115)
Q Consensus 37 ~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~ 72 (115)
+.||+-|| =-+++-.=-.+.+|-+=|||-+++
T Consensus 216 ~ernEkmK----ee~m~kLKdlGN~iL~pFGlStdn 247 (271)
T KOG4234|consen 216 NERNEKMK----EEMMEKLKDLGNFILSPFGLSTDN 247 (271)
T ss_pred HHHHHHHH----HHHHHHHHHhhhhhcccccccccc
Confidence 78899998 566666677789999999996654
No 114
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=31.71 E-value=2.9e+02 Score=22.68 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 033601 8 VQVDGIVNKLSTLREYVDDTEDYINIMLD 36 (115)
Q Consensus 8 ~~~~~~~~~~~~l~~~i~~~~~~~~~~l~ 36 (115)
+-++...++++.+.+.+..+-++.....|
T Consensus 305 rTC~a~~~R~~~Ls~rv~Ra~~LLRTrVd 333 (420)
T PF11902_consen 305 RTCEAVERRQEDLSRRVARATDLLRTRVD 333 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555556666666666666666555554
No 115
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.40 E-value=1.7e+02 Score=19.74 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhHHHHH
Q 033601 3 LEAYFVQVDGIVNKLSTL-REYVDDTEDYI 31 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l-~~~i~~~~~~~ 31 (115)
|+.|-++|.+|..+-..+ .+..++.++++
T Consensus 41 l~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~ 70 (128)
T PF06295_consen 41 LEQYKQEVNDHFAQTAELLDNLTQDYQKLY 70 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777655444 23333344443
No 116
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=31.09 E-value=1.4e+02 Score=18.78 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCcccc
Q 033601 48 MLTTATLVISAFIALVGVFGMNI-TIELFD 76 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~-~~~~~~ 76 (115)
.|-+.|++.+..+.+++++--.+ ..|+|.
T Consensus 13 ilkimsviyli~sil~afs~~sli~~~gf~ 42 (87)
T PF13140_consen 13 ILKIMSVIYLIVSILMAFSAGSLIHNPGFG 42 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 46677778888888888876665 455553
No 117
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.97 E-value=1.2e+02 Score=18.12 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 033601 8 VQVDGIVNKLSTLREYVDDTE 28 (115)
Q Consensus 8 ~~~~~~~~~~~~l~~~i~~~~ 28 (115)
+++..+-.+++...+.++..+
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE 26 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555444444433
No 118
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=30.38 E-value=2.5e+02 Score=21.49 Aligned_cols=70 Identities=6% Similarity=-0.011 Sum_probs=35.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033601 35 LDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITIELFDHTKARM----PEFLWTVAGGTIGTIFLYAAAIAWYKYK 110 (115)
Q Consensus 35 l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~fk~k 110 (115)
-+.+.|++.+ ..+++.+ +..++++++.=..|++.-. +..+.. .-+--+. ..++.+++....+++.|||
T Consensus 169 ~~~~~~~i~~---~asilGl-~vvGal~as~V~v~~~l~~--~~g~~~~~lQ~~lD~I~--P~lLpl~~~~~~y~ll~kk 240 (264)
T PF03613_consen 169 QSGLLQKITE---AASILGL-MVVGALIASYVNVSTPLTI--TIGGVTISLQEILDGIM--PGLLPLLLTLLVYWLLKKK 240 (264)
T ss_pred HhhHHHHHHH---HHHHHHH-HHHHHHHHHeEEEeeeEEE--ecCCceeeHHHhHHhHH--hhHHHHHHHHHHHHHHhcC
Confidence 3466677777 4666665 4557777777555554211 000100 0111111 1123455556778888888
Q ss_pred cc
Q 033601 111 RL 112 (115)
Q Consensus 111 ~w 112 (115)
||
T Consensus 241 ~~ 242 (264)
T PF03613_consen 241 KV 242 (264)
T ss_pred CC
Confidence 76
No 119
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=30.35 E-value=1.2e+02 Score=17.61 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=15.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHhHH
Q 033601 5 AYFVQVDG-IVNKLSTLREYVDDTEDYINIMLDD 37 (115)
Q Consensus 5 ~Y~~~~~~-~~~~~~~l~~~i~~~~~~~~~~l~~ 37 (115)
.|.++.|. .-.+++.++...+.+-+.+...++-
T Consensus 5 ~~l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~ 38 (59)
T PF10444_consen 5 AFLQNFDLEVEERIRRLRAQYENLLQSLRNRLEM 38 (59)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3345555555555555555444443
No 120
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.30 E-value=90 Score=22.26 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 95 GTIFLYAAAIAWYKY 109 (115)
Q Consensus 95 ~~~~~~~~~~~~fk~ 109 (115)
..++++++...||.+
T Consensus 40 Vliiiiivli~lcss 54 (189)
T PF05568_consen 40 VLIIIIIVLIYLCSS 54 (189)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444455555543
No 121
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.28 E-value=2.3e+02 Score=21.02 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=7.7
Q ss_pred HHHHHHhHHHHH
Q 033601 37 DKQNNLLQMGVM 48 (115)
Q Consensus 37 ~~~N~~m~~~l~ 48 (115)
..+++.||...+
T Consensus 112 ~~Q~elmk~qfk 123 (201)
T COG1422 112 DDQRELMKMQFK 123 (201)
T ss_pred HHHHHHHHHhhh
Confidence 566777776543
No 122
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=30.10 E-value=3.3e+02 Score=24.39 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
.-+.-++.++..|.++|+.++-+.
T Consensus 275 ~~~g~~I~~s~lT~~~gf~~l~~~ 298 (910)
T TIGR00833 275 RGTGKAILGSALTVAVAFLALSLA 298 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566667777888888888773
No 123
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=29.81 E-value=1.6e+02 Score=25.21 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 033601 49 LTTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fGMN~ 70 (115)
....+.+++..+++..++|+|+
T Consensus 273 ~~a~~~~l~~~~~~~s~~Gt~~ 294 (571)
T PRK10369 273 FRHWSLLLAIVTLILSLLGTLI 294 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777888999999996
No 124
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.68 E-value=3.5e+02 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 42 LLQMGVMLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 42 ~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
..++-+.+++.|+++..+ -.++||...+
T Consensus 392 ~~~il~~~gi~sii~G~l--yG~fFG~~~~ 419 (646)
T PRK05771 392 LLKILIYLGISTIIWGLL--TGSFFGFSLP 419 (646)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhHhcCccc
Confidence 444433566666666554 4778897764
No 125
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=29.58 E-value=1.4e+02 Score=25.71 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=30.6
Q ss_pred HHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCchHHHHHH
Q 033601 33 IMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITIELFDHTKARMPEFLWTVA 90 (115)
Q Consensus 33 ~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~~~~~ 90 (115)
..+..+++|-+. +.+.+..+.|.+.+++.++-.+... ..+.|.|+...+
T Consensus 156 sEl~p~k~R~~~----~~~~~~~~i~~~~~~~~ia~~~~~~-----~~WRw~~~~~~i 204 (599)
T PF06609_consen 156 SELVPNKWRGLG----LAIASIPFIITTWISPLIAQLFAAH-----SGWRWIFYIFII 204 (599)
T ss_pred HHhcccchhhhH----hHHHHHHHHhhhcccHHHHHHhccC-----CCcchHHHHHHH
Confidence 334456777665 5666677777777778887766421 346666655544
No 126
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=29.57 E-value=2.8e+02 Score=21.71 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHH
Q 033601 13 IVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTT 51 (115)
Q Consensus 13 ~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti 51 (115)
+.+.++.|.+..++..+.++..+...++++=+++-+++.
T Consensus 23 i~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~ 61 (297)
T PF11945_consen 23 IADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEV 61 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444446666666666666666665555444443
No 127
>PF05802 EspB: Enterobacterial EspB protein
Probab=29.55 E-value=1.5e+02 Score=23.34 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHH
Q 033601 3 LEAYFVQVDGIVNKLS-TLREYVDDTEDYIN 32 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~-~l~~~i~~~~~~~~ 32 (115)
||.|-||+....+.+. ++|+.-...+|+.+
T Consensus 274 l~~ykq~vrr~qddi~~rlr~~t~~~rdl~~ 304 (317)
T PF05802_consen 274 LELYKQDVRRTQDDITSRLRDMTTAARDLTD 304 (317)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6889999987777663 45555555555443
No 128
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=29.52 E-value=82 Score=15.65 Aligned_cols=8 Identities=13% Similarity=0.360 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 033601 104 IAWYKYKR 111 (115)
Q Consensus 104 ~~~fk~k~ 111 (115)
...++|||
T Consensus 18 ~~i~~rrK 25 (26)
T TIGR03024 18 IVILRRRK 25 (26)
T ss_pred HHHHhhcc
Confidence 33444443
No 129
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=29.08 E-value=1.4e+02 Score=19.91 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHh
Q 033601 5 AYFVQVDGIVNKL-STLREYVDDTEDYINIML 35 (115)
Q Consensus 5 ~Y~~~~~~~~~~~-~~l~~~i~~~~~~~~~~l 35 (115)
.|++++..+.+++ +...+.++..-+.+...+
T Consensus 1 ~y~~~~~~~l~~v~~~~~~~i~~aa~~i~~~~ 32 (138)
T PF13580_consen 1 QYFDEIQELLEAVEETQAEAIEKAADLIAEAL 32 (138)
T ss_dssp -HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988 555666766666665555
No 130
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=28.63 E-value=44 Score=20.77 Aligned_cols=12 Identities=0% Similarity=0.321 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcc
Q 033601 101 AAAIAWYKYKRL 112 (115)
Q Consensus 101 ~~~~~~fk~k~w 112 (115)
+..+++||||.|
T Consensus 42 ~~s~l~frrR~~ 53 (75)
T PF04418_consen 42 VFSLLFFRRRAW 53 (75)
T ss_pred HHHHHHHccchH
Confidence 346778888877
No 131
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=28.57 E-value=19 Score=18.95 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHh
Q 033601 101 AAAIAWYKYK 110 (115)
Q Consensus 101 ~~~~~~fk~k 110 (115)
.+.+.++|||
T Consensus 30 ~~~~~~~krr 39 (39)
T PF00746_consen 30 GGGLLLVKRR 39 (39)
T ss_dssp ----------
T ss_pred HHHHHheecC
Confidence 3455555554
No 132
>PF15050 SCIMP: SCIMP protein
Probab=28.27 E-value=1.4e+02 Score=20.45 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 033601 94 IGTIFLYAAAIAWYKY 109 (115)
Q Consensus 94 ~~~~~~~~~~~~~fk~ 109 (115)
+.++++.++++...||
T Consensus 18 ~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 18 LVSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444455544554
No 133
>PF13326 PSII_Pbs27: Photosystem II Pbs27; PDB: 2KND_A 2KMF_A 2Y6X_A.
Probab=27.91 E-value=1.3e+02 Score=20.91 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHhH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 033601 4 EAYFVQVDGIVNKLSTL----------REYVDDTEDYINIMLD-DKQNNLLQMGVMLTTATLVISAFIALVGVFGMN 69 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l----------~~~i~~~~~~~~~~l~-~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN 69 (115)
..|.+|..++.+++.+- .+..+..++.++.-++ -+++.... .+.-.+.+-..+.-++|.|-=|
T Consensus 47 ~~Y~~dt~~vv~~lr~~l~l~~d~~~~~~~~~~ar~~in~~vs~YRr~~~v~---g~~Sf~~m~tAln~LaghY~s~ 120 (145)
T PF13326_consen 47 GDYVKDTRAVVKTLREALELDKDDPNRAEAAAEARELINDYVSRYRRGPSVS---GLPSFTTMYTALNALAGHYSSY 120 (145)
T ss_dssp S-CHHHHHHHHHHHHHHHCS-TT-TTHHHHHHHHHHHHHHHHCCCCCCHHCC---TSHHHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhCCCCCcC---CcchHHHHHHHHHHHHHHHHhC
Confidence 46888888887776433 5678888888888886 44554555 4667777778888999988554
No 134
>PRK09110 flagellar motor protein MotA; Validated
Probab=27.89 E-value=1.4e+02 Score=23.16 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCcccccccCCCchHHHHHHHHH
Q 033601 49 LTTATLVISAFIALVGVF--GMNITIELFDHTKARMPEFLWTVAGGT 93 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~f--GMN~~~~~~~~~~~~~~~f~~~~~~~~ 93 (115)
+|++..+.....++.|+. |=|+..- -+++++.+++++++
T Consensus 2 ~tliGli~~~~~i~~g~~l~gg~~~~l------~~~~~~lIV~Ggtl 42 (283)
T PRK09110 2 LIIIGYIVVLGSVFGGYLLAGGHLGAL------IQPAELLIIGGAAL 42 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCChhHh------hchhHHHHHHHhHH
Confidence 577888888888888876 5455432 25667777777554
No 135
>PRK15066 inner membrane transport permease; Provisional
Probab=27.80 E-value=1.5e+02 Score=21.71 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhccccC
Q 033601 93 TIGTIFLYAAAIAWYKYKRLLES 115 (115)
Q Consensus 93 ~~~~~~~~~~~~~~fk~k~wl~~ 115 (115)
++.+++.+....+.+||++-+++
T Consensus 235 ~~~~~v~~~la~~~~~r~~~~~~ 257 (257)
T PRK15066 235 LVFIVVLYLLAWYLLERGRGLRS 257 (257)
T ss_pred HHHHHHHHHHHHHHHHhhcccCC
Confidence 33444555556677888776654
No 136
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.73 E-value=2e+02 Score=19.48 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 033601 48 MLTTATLVISAFIA 61 (115)
Q Consensus 48 ~Lti~t~i~~p~t~ 61 (115)
.++++.++++...+
T Consensus 97 il~~v~~i~l~iii 110 (116)
T KOG0860|consen 97 ILGLVIIILLVVII 110 (116)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666655554443
No 137
>COG4267 Predicted membrane protein [Function unknown]
Probab=27.69 E-value=3.6e+02 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 033601 22 EYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNI 70 (115)
Q Consensus 22 ~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~ 70 (115)
+++++.++.....+-+.--++|++ ..-+.-++++-+..+-+.+||--
T Consensus 313 ~~I~~~~~kMiltlrq~i~~~~~l--Q~~a~l~~flL~~~Ll~~~~lS~ 359 (467)
T COG4267 313 REIENNLKKMILTLRQGILEIMEL--QMLASLLCFLLADALLLWFGLSE 359 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcChHH
Confidence 345555555555555666677776 33334445666677778888864
No 138
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.69 E-value=1e+02 Score=24.25 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 033601 36 DDKQNNLLQMGVMLTTATLVISA 58 (115)
Q Consensus 36 ~~~~N~~m~~~l~Lti~t~i~~p 58 (115)
..++|+-|++-+.|++..++++.
T Consensus 275 yQk~~~k~~~i~~L~l~ii~llv 297 (305)
T KOG0809|consen 275 YQKRNKKMKVILMLTLLIIALLV 297 (305)
T ss_pred HHhcCCceEehHHHHHHHHHHHH
Confidence 36788888865555555544443
No 139
>PLN00053 photosystem II subunit R; Provisional
Probab=27.58 E-value=42 Score=22.56 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=13.7
Q ss_pred HhcCCCC--CcccccccCCCch
Q 033601 65 VFGMNIT--IELFDHTKARMPE 84 (115)
Q Consensus 65 ~fGMN~~--~~~~~~~~~~~~~ 84 (115)
=||-|++ +|.|.|++.++.+
T Consensus 60 KYGANVDgYSPIY~~~ews~~G 81 (117)
T PLN00053 60 KYGANVDGYSPIYTPDEWSPSG 81 (117)
T ss_pred hcCccccccCCCcChhhcCCCC
Confidence 4899997 7877765544443
No 140
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=27.36 E-value=1.5e+02 Score=17.86 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 033601 47 VMLTTATLVISAFIALVGVFGMNITI 72 (115)
Q Consensus 47 l~Lti~t~i~~p~t~i~g~fGMN~~~ 72 (115)
..++.+++..+..++.+.+-||=|+.
T Consensus 8 ivlAtiavFiaLagl~~~I~GlLfD~ 33 (62)
T PF11177_consen 8 IVLATIAVFIALAGLAAVIHGLLFDE 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 36888888899999999999998874
No 141
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=26.79 E-value=93 Score=19.51 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 033601 48 MLTTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~ 71 (115)
.++++++++++..-+.+.||...+
T Consensus 13 w~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 13 LIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Confidence 589999999999999999999775
No 142
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=26.44 E-value=3.3e+02 Score=21.85 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcc
Q 033601 37 DKQNNLLQMGVMLTTATLVISAFIALVGVFGMNI-TIEL 74 (115)
Q Consensus 37 ~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~-~~~~ 74 (115)
.-.+++.| +.+-++.|....+|.|+-==|+ .+|+
T Consensus 68 ~le~~i~k----~~~~~ilf~tiGLiiGLlia~l~~~pL 102 (356)
T COG4956 68 RLEEQIRK----LPVTTILFGTIGLIIGLLIAVLLSSPL 102 (356)
T ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44455666 6666666666666666544444 2344
No 143
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.03 E-value=3.1e+02 Score=21.16 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 7 FVQVDGIVNKLSTLR 21 (115)
Q Consensus 7 ~~~~~~~~~~~~~l~ 21 (115)
..|+..+..++..+.
T Consensus 189 I~dvN~IFkdL~~lV 203 (269)
T KOG0811|consen 189 IIDVNEIFKDLGSLV 203 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 144
>PRK09459 pspG phage shock protein G; Reviewed
Probab=25.93 E-value=1.3e+02 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCCC
Q 033601 57 SAFIALVGVFGMNIT 71 (115)
Q Consensus 57 ~p~t~i~g~fGMN~~ 71 (115)
....+++|.||+=++
T Consensus 32 ~~vM~l~Gm~~lviK 46 (76)
T PRK09459 32 TLVMFLGGMFALMIK 46 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334567888888876
No 145
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=25.60 E-value=6.1e+02 Score=24.41 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 48 MLTTATLVISAFIAL 62 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i 62 (115)
+.|.+|+++...++.
T Consensus 1344 I~TSlTTLLallaLl 1358 (1403)
T PRK12911 1344 VMTTATTLSVLLILL 1358 (1403)
T ss_pred hHHHHHHHHHHHHHH
Confidence 466666666655554
No 146
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=25.50 E-value=50 Score=20.62 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033601 94 IGTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 94 ~~~~~~~~~~~~~fk~k~ 111 (115)
++|++..+..+..||||+
T Consensus 41 ~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 41 LLCILVLIYAIFQFKRKG 58 (74)
T ss_pred HHHHHHHHHHhheeeecC
Confidence 345555555666688876
No 147
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=25.49 E-value=1.4e+02 Score=23.98 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=20.2
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 76 DHTKARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 76 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~ 111 (115)
.|-|.+..++|++... ++.+++.++....|.|+|+
T Consensus 178 ~p~P~~geG~~~~~lA-~~~~I~~s~~~~r~ak~rQ 212 (397)
T COG4597 178 FPSPQWGEGFIAFILA-LVMAIVASVFLARWAKTRQ 212 (397)
T ss_pred cCCcccccchHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3334455567666553 3345566666777777664
No 148
>PRK08124 flagellar motor protein MotA; Validated
Probab=25.37 E-value=1.6e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCcccccccCCCchHHHHHHHHH
Q 033601 49 LTTATLVISAFIALVGVF--GMNITIELFDHTKARMPEFLWTVAGGT 93 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~f--GMN~~~~~~~~~~~~~~~f~~~~~~~~ 93 (115)
.|++..++....++.|+. |=|+..- -++.++.+++++++
T Consensus 4 ~tiiG~~~~~~~i~~g~~~~gg~~~~~------~~~~~~lIV~Ggt~ 44 (263)
T PRK08124 4 TTIIGLILGLIAVVVGMVVKGASLAVL------LNPAAILIIIVGTI 44 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH------hhHHHHHHHHHHHH
Confidence 678888888888888876 4455432 25666777777654
No 149
>PRK14011 prefoldin subunit alpha; Provisional
Probab=25.22 E-value=2.4e+02 Score=19.58 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTE 28 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~ 28 (115)
|+.|-++++.+..+++.++.......
T Consensus 12 l~~~~~qie~L~~si~~L~~a~~e~~ 37 (144)
T PRK14011 12 LEVYNQQVQKLQEELSSIDMMKMELL 37 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443333
No 150
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=25.15 E-value=1.4e+02 Score=22.59 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCCCCcccccccCCCchHHHHHHHHH
Q 033601 49 LTTATLVISAFIALVGVF-GMNITIELFDHTKARMPEFLWTVAGGT 93 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~f-GMN~~~~~~~~~~~~~~~f~~~~~~~~ 93 (115)
.|++..+.....++.|++ |=|+..- -+++++.+++++++
T Consensus 4 ~tiiGli~~~~~i~~g~~~gg~~~~l------~~~~~~lIV~GGt~ 43 (254)
T PRK08990 4 ATLIGLIGAFAFVIMAMVLGGGIGMF------VDVPSILIVFGGSL 43 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHH------hCHHHHHHHHHHHH
Confidence 688888888888888876 2233321 25667777777654
No 151
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=25.01 E-value=1.1e+02 Score=16.46 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 033601 3 LEAYFVQVDGIVNKL 17 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~ 17 (115)
.|.||.|++.-.+.+
T Consensus 9 ieryfddiqkwirni 23 (40)
T PF13124_consen 9 IERYFDDIQKWIRNI 23 (40)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777766554443
No 152
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.94 E-value=1.8e+02 Score=17.96 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Q 033601 9 QVDGIVNKLSTLREYVDDTEDYINIMLDDKQNN 41 (115)
Q Consensus 9 ~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~ 41 (115)
|..++.+|++.+.|.++.+...+......+.-|
T Consensus 13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGR 45 (70)
T PF04210_consen 13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGR 45 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhh
Confidence 445566677766666666655555444444333
No 153
>PF15179 Myc_target_1: Myc target protein 1
Probab=24.91 E-value=1e+02 Score=22.64 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033601 93 TIGTIFLYAAAIAWYKY 109 (115)
Q Consensus 93 ~~~~~~~~~~~~~~fk~ 109 (115)
+++++++++++.|.-||
T Consensus 33 LviG~li~~LltwlSRR 49 (197)
T PF15179_consen 33 LVIGALIWALLTWLSRR 49 (197)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444433333333
No 154
>PF13213 DUF4021: Protein of unknown function (DUF4021)
Probab=24.89 E-value=24 Score=19.83 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=6.7
Q ss_pred HHHHHhcCC
Q 033601 61 ALVGVFGMN 69 (115)
Q Consensus 61 ~i~g~fGMN 69 (115)
..-|+|||-
T Consensus 25 aMNGlYGMP 33 (46)
T PF13213_consen 25 AMNGLYGMP 33 (46)
T ss_pred HhccccCCC
Confidence 456899994
No 155
>PRK10963 hypothetical protein; Provisional
Probab=24.79 E-value=1.7e+02 Score=21.49 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhH-HHHHHH
Q 033601 15 NKLSTLREYVDDTEDYINIMLD-DKQNNL 42 (115)
Q Consensus 15 ~~~~~l~~~i~~~~~~~~~~l~-~~~N~~ 42 (115)
.+++.+|+.++.+++.+...++ .+.|+-
T Consensus 44 rQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~ 72 (223)
T PRK10963 44 WQMARQRNHIHVLEEEMTLLMEQAIANED 72 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888877776 344543
No 156
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=24.75 E-value=1.2e+02 Score=15.92 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=5.9
Q ss_pred HHHHHHHHhc
Q 033601 102 AAIAWYKYKR 111 (115)
Q Consensus 102 ~~~~~fk~k~ 111 (115)
.....|+||+
T Consensus 24 ~~~~i~~~~~ 33 (33)
T TIGR03068 24 IAITLFVRKK 33 (33)
T ss_pred HHHHHHhccC
Confidence 3555677764
No 157
>PRK09579 multidrug efflux protein; Reviewed
Probab=24.60 E-value=3.1e+02 Score=24.95 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 033601 49 LTTATLVISAFIALVGVFG 67 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fG 67 (115)
+|.+ ++|+|..+..|.-|
T Consensus 439 lTti-~~f~Pl~f~~g~~g 456 (1017)
T PRK09579 439 ITLA-AVYAPIGFLTGLTG 456 (1017)
T ss_pred HHHH-HHHHHHhhcCCchh
Confidence 4443 35788887776655
No 158
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=24.43 E-value=84 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=13.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033601 80 ARMPEFLWTVAGGTIGTIFLYAAAIAWYKY 109 (115)
Q Consensus 80 ~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~ 109 (115)
...|+|..+..+.+++.++++++.-.|+.+
T Consensus 197 ~~~~g~f~wl~i~~~l~~~~Y~i~g~~~n~ 226 (268)
T PF09451_consen 197 SGGWGFFTWLFIILFLFLAAYLIFGSWYNY 226 (268)
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhhheee
Confidence 345554433333334444555554444443
No 159
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.36 E-value=2.1e+02 Score=18.72 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYIN 32 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~ 32 (115)
++-|-.+++.+..+++.+.+.+++.++..+
T Consensus 8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~ 37 (129)
T cd00584 8 LQVLQQEIEELQQELARLNEAIAEYEQAKE 37 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544443
No 160
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=24.36 E-value=1.5e+02 Score=24.08 Aligned_cols=29 Identities=7% Similarity=-0.096 Sum_probs=23.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 033601 36 DDKQNNLLQMGVMLTTATLVISAFIALVG 64 (115)
Q Consensus 36 ~~~~N~~m~~~l~Lti~t~i~~p~t~i~g 64 (115)
+-.+|++.|+-++....++.-+.+|+++|
T Consensus 344 ~~~~n~~~rvllv~~l~nlGs~igt~~~~ 372 (380)
T TIGR00261 344 EYFKNKVFRVLLVAILVNLGSTIGTIYGL 372 (380)
T ss_pred HHHhcchHHHHHHHHHhhhHHHHHHHHHH
Confidence 34578899987788888888888888887
No 161
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.33 E-value=1.8e+02 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhc--CCCCCcc
Q 033601 51 TATLVISAFIALVGVFG--MNITIEL 74 (115)
Q Consensus 51 i~t~i~~p~t~i~g~fG--MN~~~~~ 74 (115)
.+.++...++||...|| ||+++++
T Consensus 357 kvvaimv~maFi~f~~~~p~ni~nnl 382 (655)
T KOG4343|consen 357 KVVAIMVVMAFIIFNYGSPMNILNNL 382 (655)
T ss_pred hhhhHHHHHHHHHHhccCcccccCCc
Confidence 45667777888888898 8887654
No 162
>PHA02650 hypothetical protein; Provisional
Probab=24.15 E-value=2e+02 Score=18.22 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 033601 98 FLYAAAIAWYKY 109 (115)
Q Consensus 98 ~~~~~~~~~fk~ 109 (115)
++.+....|+|-
T Consensus 61 i~~l~~flYLK~ 72 (81)
T PHA02650 61 IVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHH
Confidence 333445566664
No 163
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=24.13 E-value=26 Score=23.80 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=0.7
Q ss_pred HHHHHH
Q 033601 103 AIAWYK 108 (115)
Q Consensus 103 ~~~~fk 108 (115)
-..+.|
T Consensus 174 Qv~~lk 179 (183)
T PF01105_consen 174 QVYYLK 179 (183)
T ss_dssp ----HH
T ss_pred HHHHHH
Confidence 333333
No 164
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.04 E-value=1.5e+02 Score=16.77 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033601 94 IGTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 94 ~~~~~~~~~~~~~fk~k~ 111 (115)
++++..++++..|-|-|.
T Consensus 14 il~If~~iGl~IyQkikq 31 (49)
T PF11044_consen 14 ILGIFAWIGLSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666677777766553
No 165
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=23.99 E-value=2.9e+02 Score=22.44 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=8.5
Q ss_pred HHHHHHHHhcccc
Q 033601 102 AAIAWYKYKRLLE 114 (115)
Q Consensus 102 ~~~~~fk~k~wl~ 114 (115)
....|.+||||.+
T Consensus 483 ~~~~~~~~~~~~~ 495 (496)
T PRK15238 483 AWIIYQNYEKKMA 495 (496)
T ss_pred HHHHHHhhchhcc
Confidence 3556677777765
No 166
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=23.87 E-value=1.9e+02 Score=17.92 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.8
Q ss_pred HHHHHH
Q 033601 103 AIAWYK 108 (115)
Q Consensus 103 ~~~~fk 108 (115)
...|+|
T Consensus 65 ~flYLK 70 (72)
T PF12575_consen 65 TFLYLK 70 (72)
T ss_pred HHHHhc
Confidence 444544
No 167
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=23.83 E-value=1.5e+02 Score=16.64 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhH
Q 033601 8 VQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQ 44 (115)
Q Consensus 8 ~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~ 44 (115)
|+...+..+++.+...++++++.++..-..- +.++
T Consensus 2 Rq~s~L~~qL~qL~aNL~~t~~~l~~~s~Q~--~~i~ 36 (45)
T PF08227_consen 2 RQYSHLASQLAQLQANLADTENLLEMTSIQA--NSIR 36 (45)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHH
Confidence 4556677888888888999888877554332 4444
No 168
>PRK09109 motC flagellar motor protein; Reviewed
Probab=23.51 E-value=1.8e+02 Score=21.81 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCcccccccCCCchHHHHHHHHH
Q 033601 49 LTTATLVISAFIALVGVF--GMNITIELFDHTKARMPEFLWTVAGGT 93 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~f--GMN~~~~~~~~~~~~~~~f~~~~~~~~ 93 (115)
.|++..+.....++.|+. |=|+..-+ +++++.+++++++
T Consensus 4 ~t~iG~~~~~~~v~~~~~~~gg~~~~~~------~~~~~lIV~Ggt~ 44 (246)
T PRK09109 4 LSLIGLILAFVAIIGGQVLEGGHLGSLL------NGPAFLIVIGGTL 44 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHh------hHHHHHHHHHHHH
Confidence 678888888888888866 55665422 5667777777654
No 169
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=23.49 E-value=3.3e+02 Score=20.59 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 033601 49 LTTATLVISAFIALVGVFG 67 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fG 67 (115)
+..+..+.+|+.+.+=+.|
T Consensus 186 m~~vGlV~LPGmMtGqIL~ 204 (248)
T TIGR00245 186 TKTVGLVSLPGMMTGQILA 204 (248)
T ss_pred cchhheeechhHHHHHHhc
Confidence 3345566677766554443
No 170
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=23.48 E-value=1.9e+02 Score=17.69 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhH
Q 033601 11 DGIVNKLSTLREYVDDTEDYINIMLD 36 (115)
Q Consensus 11 ~~~~~~~~~l~~~i~~~~~~~~~~l~ 36 (115)
|.+..|++.+...+|++|.-++..+.
T Consensus 37 DQII~RiDDM~~riDDLEKnIaDLm~ 62 (73)
T KOG4117|consen 37 DQIIGRIDDMSSRIDDLEKNIADLMT 62 (73)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 33556677777777777777665554
No 171
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.47 E-value=2e+02 Score=22.44 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDD 37 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~ 37 (115)
++.+|.+++.+-+.++.+.+.++.++..-...++.
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~ 69 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHS 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcc
No 172
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=23.47 E-value=1.8e+02 Score=20.61 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=16.1
Q ss_pred HHHHHHH------HHHHHHHHHHHhcCCC
Q 033601 48 MLTTATL------VISAFIALVGVFGMNI 70 (115)
Q Consensus 48 ~Lti~t~------i~~p~t~i~g~fGMN~ 70 (115)
.||+.++ ++...-.++|+||.|=
T Consensus 71 ~l~iy~ll~nllLlivIgivvaGvygi~k 99 (169)
T COG5130 71 ILTIYYLLYNLLLLIVIGIVVAGVYGIRK 99 (169)
T ss_pred HHHHHHHHHhHHHHHHHhhhhheeeehhh
Confidence 3555554 4566677899999985
No 173
>PF04725 PsbR: Photosystem II 10 kDa polypeptide PsbR; InterPro: IPR006814 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight intrinsic protein PsbR found in PSII, which is also known as the 10 kDa polypeptide. The PsbR gene is found only in the nucleus of green algae and higher plants. PsbR may provide a binding site for the extrinsic oxygen-evolving complex protein PsbP to the thylakoid membrane. PsbR has a transmembrane domain to anchor it to the thylakoid membrane, and a charged N-terminal domain capable of forming ion bridges with extrinsic proteins, allowing PsbR to act as a docking protein. PsbR may be a pH-dependent stabilising protein that functions at both donor and acceptor sides of PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0042651 thylakoid membrane
Probab=23.36 E-value=61 Score=21.21 Aligned_cols=20 Identities=10% Similarity=0.257 Sum_probs=13.5
Q ss_pred HhcCCCC--CcccccccCCCch
Q 033601 65 VFGMNIT--IELFDHTKARMPE 84 (115)
Q Consensus 65 ~fGMN~~--~~~~~~~~~~~~~ 84 (115)
=||-|++ +|.+.|++.++.+
T Consensus 42 KyGANVDgYSPIY~p~~Ws~~G 63 (99)
T PF04725_consen 42 KYGANVDGYSPIYTPDEWSPSG 63 (99)
T ss_pred hcCccccccCCCcChhhcCCCC
Confidence 4899997 7877765544433
No 174
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=23.24 E-value=1.9e+02 Score=17.78 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Q 033601 9 QVDGIVNKLSTLREYVDDTEDYINIMLDDKQNN 41 (115)
Q Consensus 9 ~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~ 41 (115)
|..++.+|++++.|.++.+-..+......+.-|
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GR 45 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGR 45 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 455667777777666666655555544444443
No 175
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.93 E-value=1.6e+02 Score=20.52 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 033601 95 GTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 95 ~~~~~~~~~~~~fk~k~ 111 (115)
+.+++.+..+.|+|.|.
T Consensus 26 ll~~l~~~~~~Y~r~r~ 42 (149)
T PF11694_consen 26 LLLVLIFFFIKYLRNRL 42 (149)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34444455666776653
No 176
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=22.87 E-value=1.6e+02 Score=16.75 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCchHHHHHH
Q 033601 49 LTTATLVISAFIALVGVFGMNITIELFDHTKARMPEFLWTVA 90 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~fGMN~~~~~~~~~~~~~~~f~~~~~ 90 (115)
.+-++.+.+......|+| |.|.+ .+.-+|.....
T Consensus 4 ~~~~~f~i~~~~~~iGl~--~~~~~------l~~KGy~~~~~ 37 (53)
T PF05360_consen 4 QSWISFGISIVLMLIGLW--NAPLD------LSEKGYYAMGL 37 (53)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCC------HHHHHHHHHHH
Confidence 566777888888889999 55442 24556665444
No 177
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=22.72 E-value=3.1e+02 Score=20.17 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033601 10 VDGIVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 10 ~~~~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
...+..+++++++.+...++.++...
T Consensus 84 ~~~l~~~~~~~kqdi~t~~e~i~~ek 109 (209)
T COG5124 84 SELLKKKIQEVKQDIATYKEEIDKEK 109 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444555555555555555555544
No 178
>PF13303 PTS_EIIC_2: Phosphotransferase system, EIIC
Probab=22.67 E-value=1.6e+02 Score=23.32 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHH-HHhccccC
Q 033601 94 IGTIFLYAAAIAWY-KYKRLLES 115 (115)
Q Consensus 94 ~~~~~~~~~~~~~f-k~k~wl~~ 115 (115)
+.-+++.......| ||++|.++
T Consensus 300 ilP~v~~~~~~~~f~k~~~~ik~ 322 (327)
T PF13303_consen 300 ILPAVIAFIIYKIFIKKLKLIKP 322 (327)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCh
Confidence 44555566677778 99999863
No 179
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=22.58 E-value=2.7e+02 Score=19.26 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhH
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQ 44 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~ 44 (115)
+-|..++.....+-.+-...+.+.|.+.+.++-++|++=+
T Consensus 90 ~tfee~Ye~~k~~~~M~~v~~~v~e~~~~~m~v~Q~e~qk 129 (140)
T PF10666_consen 90 NTFEECYEKCKDLVNMTKVYMQVSEWLVGKMEVQQNEIQK 129 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666777777777777777644
No 180
>PRK08456 flagellar motor protein MotA; Validated
Probab=22.50 E-value=2e+02 Score=21.69 Aligned_cols=39 Identities=21% Similarity=0.179 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCcccccccCCCchHHHHHHHHH
Q 033601 49 LTTATLVISAFIALVGVF--GMNITIELFDHTKARMPEFLWTVAGGT 93 (115)
Q Consensus 49 Lti~t~i~~p~t~i~g~f--GMN~~~~~~~~~~~~~~~f~~~~~~~~ 93 (115)
.|++..++....++.|+. |=|...- -+++++.+++++++
T Consensus 4 ~tiiG~~~~~~~i~~~~~~~gg~~~~~------~~~~~~~IV~Ggt~ 44 (257)
T PRK08456 4 STILGMVLAVASISVGDILEGGNPLHV------IHLSSFIIVVPTAL 44 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHH------hhHhHHHHHHHHHH
Confidence 688888888888888855 5565431 25667777777654
No 181
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=22.25 E-value=3.8e+02 Score=20.83 Aligned_cols=30 Identities=10% Similarity=0.086 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 033601 27 TEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIA 61 (115)
Q Consensus 27 ~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~ 61 (115)
.+|.++...+.+.-+++ .|.+|+++....+
T Consensus 215 ~~e~i~~ai~~~lrr~l-----~TslTt~l~llpL 244 (297)
T PRK13021 215 IQEINNQAIVATFSRTM-----VTSGTTLMTVGAL 244 (297)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 44555444444433333 4555555544433
No 182
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=21.73 E-value=92 Score=26.57 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=11.1
Q ss_pred HHHhcCCCCCccc
Q 033601 63 VGVFGMNITIELF 75 (115)
Q Consensus 63 ~g~fGMN~~~~~~ 75 (115)
.|+||.|=.+|++
T Consensus 229 GGff~aNSAhPfE 241 (552)
T PF03814_consen 229 GGFFGANSAHPFE 241 (552)
T ss_pred CcccCCCCCCCCC
Confidence 5899999999973
No 183
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.61 E-value=1.8e+02 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhc
Q 033601 97 IFLYAAAIAWYKYKR 111 (115)
Q Consensus 97 ~~~~~~~~~~fk~k~ 111 (115)
+++.++.+.++|-++
T Consensus 13 v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 13 VVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445566666543
No 184
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=21.59 E-value=2.3e+02 Score=17.97 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=8.9
Q ss_pred HHHHHHHHhH---HHHHHHhH
Q 033601 27 TEDYINIMLD---DKQNNLLQ 44 (115)
Q Consensus 27 ~~~~~~~~l~---~~~N~~m~ 44 (115)
.+|......+ +..|+.+-
T Consensus 4 ~~~~~~~Y~~~H~~~~n~~lH 24 (95)
T PF06127_consen 4 LEEFFAFYLSYHRNPINRALH 24 (95)
T ss_pred HHHHHHHHHHHcCCHhhHHHH
Confidence 4444444444 55555544
No 185
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=21.40 E-value=1.8e+02 Score=21.98 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 033601 95 GTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 95 ~~~~~~~~~~~~fk~k~w 112 (115)
+.+++.=+.+-|.|-|||
T Consensus 204 G~fI~irsi~dY~rVKR~ 221 (233)
T PF10176_consen 204 GWFIFIRSIIDYWRVKRM 221 (233)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333343467778887776
No 186
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.34 E-value=3.6e+02 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033601 9 QVDGIVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 9 ~~~~~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
|+.|+.+++..+...+.++++.+...+
T Consensus 97 dl~DIsDklgvLl~e~ge~e~~~a~~~ 123 (271)
T PF13805_consen 97 DLSDISDKLGVLLYEIGELEDQYADRL 123 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444444444444443333
No 187
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.20 E-value=2e+02 Score=18.65 Aligned_cols=7 Identities=43% Similarity=0.320 Sum_probs=3.1
Q ss_pred HHHHHhc
Q 033601 105 AWYKYKR 111 (115)
Q Consensus 105 ~~fk~k~ 111 (115)
.+.||||
T Consensus 54 CC~kRkr 60 (94)
T PF05393_consen 54 CCKKRKR 60 (94)
T ss_pred HHHHhhh
Confidence 3445544
No 188
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=21.17 E-value=2.1e+02 Score=17.41 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=16.3
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHhH
Q 033601 17 LSTLREYVDDTEDYINIMLDDKQNNLLQ 44 (115)
Q Consensus 17 ~~~l~~~i~~~~~~~~~~l~~~~N~~m~ 44 (115)
.++|...+|+..+.-...||..++.-|.
T Consensus 42 ~EeLDaELD~Ym~~~~~~LD~~Ld~Y~~ 69 (74)
T PF13865_consen 42 AEELDAELDAYMSKTKSKLDAELDSYMS 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666655443
No 189
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=21.17 E-value=1.3e+02 Score=15.15 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=6.1
Q ss_pred chHHHHHHHHH
Q 033601 83 PEFLWTVAGGT 93 (115)
Q Consensus 83 ~~f~~~~~~~~ 93 (115)
|-|.|+.+..+
T Consensus 2 WYfaWilG~~l 12 (28)
T PF08173_consen 2 WYFAWILGVLL 12 (28)
T ss_pred hhHHHHHHHHH
Confidence 34666666544
No 190
>PHA02047 phage lambda Rz1-like protein
Probab=20.90 E-value=2.6e+02 Score=18.40 Aligned_cols=40 Identities=5% Similarity=0.043 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HhHHHHHHHhH
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYINI---MLDDKQNNLLQ 44 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~---~l~~~~N~~m~ 44 (115)
.|.+...+..++++..+..+...++-++. .-+.++|++-.
T Consensus 31 ~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~ 73 (101)
T PHA02047 31 IAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDR 73 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666665555554432 23355555554
No 191
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=20.81 E-value=2.6e+02 Score=21.18 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 033601 56 ISAFIALVGVFGMNITIE 73 (115)
Q Consensus 56 ~~p~t~i~g~fGMN~~~~ 73 (115)
++...+++|. ++++-+|
T Consensus 6 ~~~~~~l~g~-~~~~l~p 22 (247)
T COG1622 6 LLVALLLSGC-NLTLLDP 22 (247)
T ss_pred HHHHHHhccC-CccccCc
Confidence 3445555666 6666444
No 192
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=20.76 E-value=1.4e+02 Score=15.33 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 033601 11 DGIVNKLSTLREYVDDTEDYINIM 34 (115)
Q Consensus 11 ~~~~~~~~~l~~~i~~~~~~~~~~ 34 (115)
+++...+...++.++++++.....
T Consensus 2 ~~l~a~I~~~r~~f~~~~~aF~aY 25 (32)
T PF05465_consen 2 SDLLAAIAEFREEFDDTQDAFEAY 25 (32)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777766543
No 193
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.75 E-value=76 Score=26.84 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Q 033601 48 MLTTATLVISAFIALVGVFGMNITIE 73 (115)
Q Consensus 48 ~Lti~t~i~~p~t~i~g~fGMN~~~~ 73 (115)
++.++..+..|++++.|+.|=|-..+
T Consensus 402 v~~iw~fv~~PL~~~G~i~GkN~~~~ 427 (593)
T KOG1277|consen 402 VLLIWLFVISPLTVLGGIAGKNRSGE 427 (593)
T ss_pred HHHHHHHHhchHHHcccccccccccC
Confidence 69999999999999999999997543
No 194
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=20.70 E-value=1.8e+02 Score=16.57 Aligned_cols=14 Identities=0% Similarity=-0.114 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcCCC
Q 033601 57 SAFIALVGVFGMNI 70 (115)
Q Consensus 57 ~p~t~i~g~fGMN~ 70 (115)
..++..+-+..++.
T Consensus 12 ~lGt~~~D~l~~~l 25 (55)
T PF03988_consen 12 TLGTTAGDFLSKTL 25 (55)
T ss_pred HhHHHHHHHHHhcc
Confidence 33455555555544
No 195
>PRK14127 cell division protein GpsB; Provisional
Probab=20.60 E-value=2.7e+02 Score=18.50 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 033601 16 KLSTLREYV 24 (115)
Q Consensus 16 ~~~~l~~~i 24 (115)
++..+++.+
T Consensus 52 e~~~l~~~l 60 (109)
T PRK14127 52 ENARLKAQV 60 (109)
T ss_pred HHHHHHHHH
Confidence 333333333
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.51 E-value=3.8e+02 Score=20.21 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhH
Q 033601 7 FVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQ 44 (115)
Q Consensus 7 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~ 44 (115)
.++++++..++.+||..++...--++.....++..-..
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666655555544444444434333333
No 197
>PHA03054 IMV membrane protein; Provisional
Probab=20.35 E-value=2.3e+02 Score=17.54 Aligned_cols=8 Identities=13% Similarity=0.094 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 033601 101 AAAIAWYK 108 (115)
Q Consensus 101 ~~~~~~fk 108 (115)
+....|+|
T Consensus 63 l~~flYLK 70 (72)
T PHA03054 63 LLIYLYLK 70 (72)
T ss_pred HHHHHHHh
Confidence 34455554
No 198
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=20.26 E-value=2.8e+02 Score=18.55 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=13.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKR 111 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~ 111 (115)
....|+++.++++ .++.|.+.++++
T Consensus 67 ~A~nwavgsF~l~--------s~~~we~Cr~~r 91 (118)
T PF12597_consen 67 KAANWAVGSFFLG--------SLGSWEYCRYNR 91 (118)
T ss_pred cchhhhhHHHHHH--------HHHHHHHHHHHH
Confidence 3566666554443 234566666543
No 199
>PF15102 TMEM154: TMEM154 protein family
Probab=20.23 E-value=19 Score=25.39 Aligned_cols=6 Identities=33% Similarity=0.550 Sum_probs=2.4
Q ss_pred CCchHH
Q 033601 81 RMPEFL 86 (115)
Q Consensus 81 ~~~~f~ 86 (115)
+...|.
T Consensus 53 ~q~efi 58 (146)
T PF15102_consen 53 SQLEFI 58 (146)
T ss_pred CCcceE
Confidence 334443
No 200
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.11 E-value=3.5e+02 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC
Q 033601 50 TTATLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 50 ti~t~i~~p~t~i~g~fGMN~~ 71 (115)
+.-++.++-.|.++|+..+.+.
T Consensus 247 ~g~~i~~s~ltt~~gf~~L~~s 268 (333)
T PF03176_consen 247 TGRAILLSALTTAIGFGSLLFS 268 (333)
T ss_pred cCchhHHHHHHHHHHHHHHHHh
Confidence 3344556667777777777773
No 201
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=20.07 E-value=1.5e+02 Score=15.25 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=6.2
Q ss_pred chHHHHHHHHH
Q 033601 83 PEFLWTVAGGT 93 (115)
Q Consensus 83 ~~f~~~~~~~~ 93 (115)
|-|.|+.+..+
T Consensus 2 WYfaWilG~~l 12 (30)
T TIGR02106 2 WYFAWILGTLL 12 (30)
T ss_pred hhHHHHHHHHH
Confidence 44666666544
Done!