Query 033601
Match_columns 115
No_of_seqs 128 out of 1057
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 99.9 1.6E-25 5.3E-30 172.8 13.3 99 4-113 236-339 (339)
2 2iub_A CORA, divalent cation t 99.9 3.9E-26 1.3E-30 177.7 9.3 99 4-113 260-363 (363)
3 3rkg_A Magnesium transporter M 98.9 2.1E-09 7.2E-14 80.6 4.8 42 1-42 220-261 (261)
4 4egw_A Magnesium transport pro 96.8 0.0015 5.3E-08 48.3 4.8 41 4-44 236-280 (280)
5 3ck6_A Putative membrane trans 96.4 0.0051 1.7E-07 44.5 5.4 40 4-43 209-252 (252)
6 3nvo_A Zinc transport protein 84.7 2.4 8.3E-05 30.3 6.0 31 4-37 226-256 (264)
7 2y6x_A PSB27, photosystem II 1 84.2 4.8 0.00016 26.2 6.6 67 3-73 9-89 (113)
8 2kmf_A Photosystem II 11 kDa p 83.1 4.3 0.00015 26.5 6.1 67 3-73 13-93 (115)
9 2jwa_A Receptor tyrosine-prote 79.2 5.8 0.0002 21.5 5.3 18 95-112 23-40 (44)
10 4ev6_A Magnesium transport pro 78.5 13 0.00043 27.8 8.3 61 7-67 236-297 (339)
11 2ks1_B Epidermal growth factor 76.5 5.4 0.00019 21.6 4.2 13 100-112 28-40 (44)
12 2l2t_A Receptor tyrosine-prote 73.3 8.9 0.0003 20.7 5.0 12 101-112 28-39 (44)
13 2knc_A Integrin alpha-IIB; tra 72.3 8 0.00027 21.9 4.3 7 105-111 37-43 (54)
14 1ez3_A Syntaxin-1A; three heli 71.9 11 0.00038 23.8 5.7 34 3-36 7-40 (127)
15 2k1a_A Integrin alpha-IIB; sin 69.8 11 0.00036 20.2 4.7 11 81-91 6-16 (42)
16 3he4_B Synzip5; heterodimeric 68.2 11 0.00039 19.8 5.7 34 3-36 8-41 (46)
17 2k1k_A Ephrin type-A receptor 66.8 4.7 0.00016 21.1 2.4 9 102-110 29-37 (38)
18 2etd_A LEMA protein; bromodoma 65.4 15 0.00052 25.2 5.5 15 56-70 139-153 (171)
19 2iub_A CORA, divalent cation t 65.0 42 0.0014 25.2 10.2 63 6-68 259-322 (363)
20 3ci9_A Heat shock factor-bindi 63.8 7.3 0.00025 21.5 2.9 14 15-28 31-44 (48)
21 2l8s_A Integrin alpha-1; trans 60.6 13 0.00045 21.0 3.7 7 105-111 34-40 (54)
22 3twe_A Alpha4H; unknown functi 45.2 25 0.00084 16.5 3.6 18 6-23 6-23 (27)
23 1s94_A S-syntaxin; three helix 43.4 44 0.0015 22.4 4.9 33 3-35 38-70 (180)
24 2k21_A Potassium voltage-gated 43.4 29 0.00098 23.1 3.7 32 81-112 49-80 (138)
25 2knc_B Integrin beta-3; transm 42.9 37 0.0013 20.3 4.0 11 98-108 23-33 (79)
26 3ck6_A Putative membrane trans 40.5 69 0.0024 22.3 5.8 33 9-41 211-243 (252)
27 1iij_A ERBB-2 receptor protein 40.1 6.5 0.00022 20.3 0.1 10 102-111 26-35 (35)
28 3s8f_C Cytochrome C oxidase po 39.7 38 0.0013 17.2 4.5 30 79-108 2-31 (34)
29 3f1i_H Hepatocyte growth facto 36.0 81 0.0028 19.8 5.5 28 5-32 62-89 (98)
30 3aqp_A Probable secdf protein- 33.4 2.1E+02 0.0071 23.8 11.0 11 103-113 719-729 (741)
31 3efd_K KCSA; helix bundle, C-t 33.3 46 0.0016 16.2 3.2 22 4-25 7-28 (30)
32 3gp4_A Transcriptional regulat 29.7 1.2E+02 0.004 19.7 6.4 10 24-33 107-116 (142)
33 1dn1_B Syntaxin 1A, syntaxin b 28.5 1E+02 0.0035 22.2 5.1 34 2-35 29-62 (267)
34 2qij_C Core antigen; viral cap 27.7 16 0.00054 24.7 0.4 13 59-71 1-13 (157)
35 2yiu_B Cytochrome C1, heme pro 27.3 56 0.0019 24.1 3.4 16 98-113 239-254 (263)
36 4dx5_A Acriflavine resistance 27.1 2E+02 0.007 24.6 7.4 19 53-71 974-992 (1057)
37 3cx5_D Cytochrome C1, heme pro 25.6 63 0.0022 23.6 3.4 15 98-112 217-231 (248)
38 1pp9_D Cytochrome C-1, cytochr 24.8 67 0.0023 23.3 3.4 15 98-112 213-227 (241)
39 2l5g_B Putative uncharacterize 24.7 87 0.003 16.6 4.1 23 11-33 5-27 (42)
40 3c98_B Syntaxin-1A; protein co 23.6 1.6E+02 0.0055 20.1 5.3 32 3-34 42-73 (279)
41 4egw_A Magnesium transport pro 22.7 1.6E+02 0.0055 20.8 5.2 28 10-37 239-266 (280)
42 1zrt_D Cytochrome C1; cytochro 21.9 82 0.0028 23.1 3.4 16 98-113 236-251 (258)
43 2xz3_A Maltose ABC transporter 21.9 1.7E+02 0.0057 22.2 5.4 19 15-33 386-404 (463)
44 4err_A Autotransporter adhesin 21.7 1E+02 0.0036 19.0 3.4 9 36-44 63-71 (90)
45 2qjy_B Cytochrome C1; cytochro 21.2 85 0.0029 23.2 3.4 14 99-112 239-252 (269)
46 1ztm_A Fusion glycoprotein; fu 20.6 3.3E+02 0.011 21.8 9.7 65 10-74 140-204 (490)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.6e-25 Score=172.83 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=82.8
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccccccc
Q 033601 4 EAYFVQVDGIV----NKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT-IELFDHT 78 (115)
Q Consensus 4 e~Y~~~~~~~~----~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~-~~~~~~~ 78 (115)
+.|++|+.++. +.++.+++.++++.|.+.+..++++|++|| +||++|++|+|+|+|||+|||||+ .|.
T Consensus 236 ~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk---~LTiit~IflP~T~IaGiyGMNf~~mPe---- 308 (339)
T 4ev6_A 236 RENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK---ILTMVTTIFAVPMWITGIYGMNFSYLPL---- 308 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHSSHHHHHHHHTTCCCSCCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhccCcCCCCCC----
Confidence 45777776654 455777888899999999999999999999 799999999999999999999998 554
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
.+++++||++++++ +++++++++|||||||+
T Consensus 309 l~~~~gy~~~l~~m----~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 309 ANNPQGFWLVMALM----VVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp SSCTTHHHHHHHHH----HHHHHHHHHHHHTTTCC
T ss_pred ccCchHHHHHHHHH----HHHHHHHHHHHHHcCCC
Confidence 67888888877654 45566789999999997
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=99.93 E-value=3.9e-26 Score=177.72 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Ccccccc
Q 033601 4 EAYFVQVDGIVNK----LSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNIT-IELFDHT 78 (115)
Q Consensus 4 e~Y~~~~~~~~~~----~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~-~~~~~~~ 78 (115)
+.|++|+.++..+ ++.++|.++++.|.+.+.+++++|++|| +||++|++|+|+|+|||+|||||+ .|.
T Consensus 260 ~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk---~LTiit~IflP~T~IaGiyGMNf~~mPe---- 332 (363)
T 2iub_A 260 VPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMK---VLTIIATIFMPLTFIAGIYGMNFEYMPE---- 332 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTSCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcccCCCCCc----
Confidence 4688888887654 5677888999999999999999999999 799999999999999999999998 543
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRLL 113 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~wl 113 (115)
.+++++|+++++++ +++++++++|||||||+
T Consensus 333 l~~~~Gy~~~l~~m----~~i~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 333 LRWKWGYPVVLAVM----GVIAVIMVVYFKKKKWL 363 (363)
T ss_dssp ------CHHHHHHH----HHHHHHHHTTTTSCC--
T ss_pred ccCcHHHHHHHHHH----HHHHHHHHHHHHHcccC
Confidence 57888887776654 45566789999999996
No 3
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=98.85 E-value=2.1e-09 Score=80.65 Aligned_cols=42 Identities=38% Similarity=0.673 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 033601 1 MLLEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNL 42 (115)
Q Consensus 1 ~lLe~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~ 42 (115)
||||+||+++|++.++++.+++++++++|.+++.+|++||++
T Consensus 220 mLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 220 MLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 799999999999999999999999999999999999999974
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=96.79 E-value=0.0015 Score=48.30 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhHHHHHHHhH
Q 033601 4 EAYFVQVDGIVNK----LSTLREYVDDTEDYINIMLDDKQNNLLQ 44 (115)
Q Consensus 4 e~Y~~~~~~~~~~----~~~l~~~i~~~~~~~~~~l~~~~N~~m~ 44 (115)
+.|++|+.++..+ ++..++.++++.|.+.+..++++|++||
T Consensus 236 ~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~iMK 280 (280)
T 4egw_A 236 RENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMK 280 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5799999887655 4667788888899999999999999997
No 5
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=96.42 E-value=0.0051 Score=44.54 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHhHHHHHHHh
Q 033601 4 EAYFVQVDGIVNK----LSTLREYVDDTEDYINIMLDDKQNNLL 43 (115)
Q Consensus 4 e~Y~~~~~~~~~~----~~~l~~~i~~~~~~~~~~l~~~~N~~m 43 (115)
+.|++|+.++..+ ++.++|.+..+.|.+.+..++++|++|
T Consensus 209 ~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~N~~m 252 (252)
T 3ck6_A 209 PHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNS 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4699999887755 578899999999999999999999986
No 6
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=84.65 E-value=2.4 Score=30.31 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 033601 4 EAYFVQVDGIVNKLSTLREYVDDTEDYINIMLDD 37 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~ 37 (115)
..|++|+.++..++.+. ++..+|..+..+|.
T Consensus 226 ~~~l~Dv~d~~~~~~e~---~~~~re~l~~l~d~ 256 (264)
T 3nvo_A 226 RRRMQDIADRLGRGLDE---IDACIARTGIMADE 256 (264)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 56889988888776555 55555555555543
No 7
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=84.16 E-value=4.8 Score=26.19 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHh---cC
Q 033601 3 LEAYFVQVDGIVNKLSTL----------REYVDDTEDYINIMLDDKQNN-LLQMGVMLTTATLVISAFIALVGVF---GM 68 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l----------~~~i~~~~~~~~~~l~~~~N~-~m~~~l~Lti~t~i~~p~t~i~g~f---GM 68 (115)
-..|.+|..++.+.+.+. .+..+.+++.++.-++.-|++ -.. .+.-.++.-..+..++|.| |
T Consensus 9 ~~~Y~~dT~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~---g~~Sfttm~tAlNaLAGHY~s~g- 84 (113)
T 2y6x_A 9 TGNFREDTLALISSLREAIALPENDPNKKAAQAEARKKLNDFFALYRRDDSLR---SLSSFMTMQTALNSLAGHYSSYP- 84 (113)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHTTCHHHH---TSHHHHHHHHHHHHHHHHHHHCT-
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcc---ccchHHHHHHHHHHHHHHHhhcC-
Confidence 456888888877766433 566788888999888865543 333 3777777788888888876 7
Q ss_pred CCCCc
Q 033601 69 NITIE 73 (115)
Q Consensus 69 N~~~~ 73 (115)
|-|.|
T Consensus 85 ~~PlP 89 (113)
T 2y6x_A 85 NRPLP 89 (113)
T ss_dssp TSCCC
T ss_pred CCCCC
Confidence 77665
No 8
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=83.14 E-value=4.3 Score=26.47 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHhHHHHHHHHhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHh---cC
Q 033601 3 LEAYFVQVDGIVNKLST----------LREYVDDTEDYINIMLDDKQNN-LLQMGVMLTTATLVISAFIALVGVF---GM 68 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~----------l~~~i~~~~~~~~~~l~~~~N~-~m~~~l~Lti~t~i~~p~t~i~g~f---GM 68 (115)
-..|.+|..++.+.+.+ ..+..+.+++.++.-++.-|++ -.. .+.-.++.-..+..++|.| |
T Consensus 13 ~~~Y~~dT~~Vv~~lr~~l~l~~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~---g~~Sf~tm~tAlNaLAGHY~s~g- 88 (115)
T 2kmf_A 13 TGNYSQDTLTVIATLREAIDLPQDAPNRQEVQDTARGQINDYISRYRRKGDAG---GLKSFTTMQTALNSLAGYYTSYG- 88 (115)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHTHHHHCSS---SCHHHHHHHHHHHHHHHHHHHHS-
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcc---ccchHHHHHHHHHHHHHHHhhcC-
Confidence 45688888887777643 3567888899999999865544 333 3677777777788888876 7
Q ss_pred CCCCc
Q 033601 69 NITIE 73 (115)
Q Consensus 69 N~~~~ 73 (115)
|-|.|
T Consensus 89 ~~PlP 93 (115)
T 2kmf_A 89 ARPIP 93 (115)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77765
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=79.21 E-value=5.8 Score=21.52 Aligned_cols=18 Identities=11% Similarity=-0.108 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 033601 95 GTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 95 ~~~~~~~~~~~~fk~k~w 112 (115)
+.+++.++...|+|||+-
T Consensus 23 l~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhheehhhh
Confidence 334444456777888764
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=78.49 E-value=13 Score=27.82 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhc
Q 033601 7 FVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNNL-LQMGVMLTTATLVISAFIALVGVFG 67 (115)
Q Consensus 7 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~-m~~~l~Lti~t~i~~p~t~i~g~fG 67 (115)
-..++++.+++.++.+.++..+|.++..+|...|.+ .+.|-.+-++|++-+...-.+=+-|
T Consensus 236 ~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaG 297 (339)
T 4ev6_A 236 RENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITG 297 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888889988888888887555443 2333366666666666666665555
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=76.50 E-value=5.4 Score=21.57 Aligned_cols=13 Identities=0% Similarity=0.028 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhcc
Q 033601 100 YAAAIAWYKYKRL 112 (115)
Q Consensus 100 ~~~~~~~fk~k~w 112 (115)
.++.++|+|||+-
T Consensus 28 ~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 28 ALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHhhhhHh
Confidence 3345555565543
No 12
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=73.32 E-value=8.9 Score=20.73 Aligned_cols=12 Identities=8% Similarity=0.171 Sum_probs=5.9
Q ss_pred HHHHHHHHHhcc
Q 033601 101 AAAIAWYKYKRL 112 (115)
Q Consensus 101 ~~~~~~fk~k~w 112 (115)
++.++|+|||+-
T Consensus 28 ~~~~~~~RRRr~ 39 (44)
T 2l2t_A 28 LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHhhhhhh
Confidence 344555555543
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=72.28 E-value=8 Score=21.85 Aligned_cols=7 Identities=29% Similarity=0.766 Sum_probs=3.7
Q ss_pred HHHHHhc
Q 033601 105 AWYKYKR 111 (115)
Q Consensus 105 ~~fk~k~ 111 (115)
.+||||+
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 4556554
No 14
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=71.86 E-value=11 Score=23.81 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLD 36 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~ 36 (115)
++.||.+++++-..++.+++.++.+.+.....++
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~ 40 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILA 40 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999888888887766564
No 15
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=69.79 E-value=11 Score=20.17 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=5.3
Q ss_pred CCchHHHHHHH
Q 033601 81 RMPEFLWTVAG 91 (115)
Q Consensus 81 ~~~~f~~~~~~ 91 (115)
.+.+.|.++..
T Consensus 6 ~~vp~wiIi~s 16 (42)
T 2k1a_A 6 RAIPIWWVLVG 16 (42)
T ss_dssp CCCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 34455555443
No 16
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=68.17 E-value=11 Score=19.85 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIMLD 36 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~ 36 (115)
|.+|.|++++--..+..++|.+.......+..+.
T Consensus 8 lknyiqeleernaelknlkehlkfakaelefela 41 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888777666665554
No 17
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=66.84 E-value=4.7 Score=21.07 Aligned_cols=9 Identities=0% Similarity=0.202 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 033601 102 AAIAWYKYK 110 (115)
Q Consensus 102 ~~~~~fk~k 110 (115)
+..+++.||
T Consensus 29 ~l~~~~~rr 37 (38)
T 2k1k_A 29 GILVFRSRR 37 (38)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHeec
Confidence 333444444
No 18
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=65.40 E-value=15 Score=25.20 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=3.0
Q ss_pred HHHHHHHHHHhcCCC
Q 033601 56 ISAFIALVGVFGMNI 70 (115)
Q Consensus 56 ~~p~t~i~g~fGMN~ 70 (115)
-.|..+++++||.--
T Consensus 139 ~FP~~ivA~l~gf~~ 153 (171)
T 2etd_A 139 XFPGVIFAXMFGFEE 153 (171)
T ss_dssp C----------CCCC
T ss_pred cCcHHHHHHHhCCCC
Confidence 369999999999754
No 19
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=65.01 E-value=42 Score=25.20 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 033601 6 YFVQVDGIVNKLSTLREYVDDTEDYINIMLDDKQNN-LLQMGVMLTTATLVISAFIALVGVFGM 68 (115)
Q Consensus 6 Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~-~m~~~l~Lti~t~i~~p~t~i~g~fGM 68 (115)
-...++|+.+.+.++.+.++..+|.++..+|...+. -.++|-.+-++|++-+...-.|=+-|.
T Consensus 259 ~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGi 322 (363)
T 2iub_A 259 TVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGI 322 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344667888889999999999999998888744433 233344888888888777777777774
No 20
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=63.85 E-value=7.3 Score=21.46 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhHH
Q 033601 15 NKLSTLREYVDDTE 28 (115)
Q Consensus 15 ~~~~~l~~~i~~~~ 28 (115)
.|++++..+||++|
T Consensus 31 ~riDdM~~RIDdLE 44 (48)
T 3ci9_A 31 GRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHhHHHHHH
Confidence 33444444444443
No 21
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.56 E-value=13 Score=20.96 Aligned_cols=7 Identities=14% Similarity=0.372 Sum_probs=3.9
Q ss_pred HHHHHhc
Q 033601 105 AWYKYKR 111 (115)
Q Consensus 105 ~~fk~k~ 111 (115)
.+||||+
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 4566654
No 22
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=45.16 E-value=25 Score=16.52 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033601 6 YFVQVDGIVNKLSTLREY 23 (115)
Q Consensus 6 Y~~~~~~~~~~~~~l~~~ 23 (115)
.+.+++|+.+++..++..
T Consensus 6 lykeledlqerlrklrkk 23 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 23
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=43.43 E-value=44 Score=22.43 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
++.||.+++++-+.+..+++.++.+.......+
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L 70 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDIL 70 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999988888888887765544
No 24
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=43.40 E-value=29 Score=23.11 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033601 81 RMPEFLWTVAGGTIGTIFLYAAAIAWYKYKRL 112 (115)
Q Consensus 81 ~~~~f~~~~~~~~~~~~~~~~~~~~~fk~k~w 112 (115)
+...+.++..++...++.++.+++.|.|-||.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 34445566565556677777788889888875
No 25
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.88 E-value=37 Score=20.30 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 033601 98 FLYAAAIAWYK 108 (115)
Q Consensus 98 ~~~~~~~~~fk 108 (115)
++.++.+...|
T Consensus 23 liGllllliwk 33 (79)
T 2knc_B 23 LIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333343
No 26
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=40.48 E-value=69 Score=22.31 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Q 033601 9 QVDGIVNKLSTLREYVDDTEDYINIMLDDKQNN 41 (115)
Q Consensus 9 ~~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~ 41 (115)
.+.++.+++.++.+.++.++|..+..+|...+.
T Consensus 211 ~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~ 243 (252)
T 3ck6_A 211 QYRFAHNNITRINETIEFYLGEVALFQDEIKHN 243 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888777754443
No 27
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=40.05 E-value=6.5 Score=20.28 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=6.5
Q ss_pred HHHHHHHHhc
Q 033601 102 AAIAWYKYKR 111 (115)
Q Consensus 102 ~~~~~fk~k~ 111 (115)
+...|.|||+
T Consensus 26 ~~~~~iRRr~ 35 (35)
T 1iij_A 26 VVGILIKRRR 35 (35)
T ss_dssp TTTHHHHHCC
T ss_pred HhheEEeecC
Confidence 4566777764
No 28
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=39.74 E-value=38 Score=17.17 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=13.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 033601 79 KARMPEFLWTVAGGTIGTIFLYAAAIAWYK 108 (115)
Q Consensus 79 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~fk 108 (115)
|+++.+-+..+.+...+.++.+...+..|-
T Consensus 2 E~~l~GTl~~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 2 EEKPKGALAVILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccceehHHHHHHHHHHHHHHHHHeeee
Confidence 345666655555433333444444554443
No 29
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=35.96 E-value=81 Score=19.79 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033601 5 AYFVQVDGIVNKLSTLREYVDDTEDYIN 32 (115)
Q Consensus 5 ~Y~~~~~~~~~~~~~l~~~i~~~~~~~~ 32 (115)
.||..++|-+.++.+-++.+|.+++-..
T Consensus 62 ~~yE~LQDkL~qi~eAR~ALdaLR~eH~ 89 (98)
T 3f1i_H 62 LYYEGLQDKLAQIRDARGALSALREEHR 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555665555443
No 30
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=33.42 E-value=2.1e+02 Score=23.76 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=4.7
Q ss_pred HHHHHHHhccc
Q 033601 103 AIAWYKYKRLL 113 (115)
Q Consensus 103 ~~~~fk~k~wl 113 (115)
++.++++|++-
T Consensus 719 l~~~~~~~~~~ 729 (741)
T 3aqp_A 719 LVVAWKNRRKA 729 (741)
T ss_dssp HHHHHHHC---
T ss_pred HHHHhhhcccc
Confidence 45566666553
No 31
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=33.26 E-value=46 Score=16.16 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033601 4 EAYFVQVDGIVNKLSTLREYVD 25 (115)
Q Consensus 4 e~Y~~~~~~~~~~~~~l~~~i~ 25 (115)
|.|-|--..+.++.+++...+|
T Consensus 7 eay~~atRALHeRFDRLEr~ld 28 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERMLD 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5677666666666666655444
No 32
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.73 E-value=1.2e+02 Score=19.70 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=3.5
Q ss_pred HHhHHHHHHH
Q 033601 24 VDDTEDYINI 33 (115)
Q Consensus 24 i~~~~~~~~~ 33 (115)
++...+.++.
T Consensus 107 L~~~i~~~~~ 116 (142)
T 3gp4_A 107 LDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 33
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=28.54 E-value=1e+02 Score=22.17 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 033601 2 LLEAYFVQVDGIVNKLSTLREYVDDTEDYINIML 35 (115)
Q Consensus 2 lLe~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~l 35 (115)
.++.||.+++++-..+..+...++.+.......+
T Consensus 29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l 62 (267)
T 1dn1_B 29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAIL 62 (267)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3688999999999999999888888888776544
No 34
>2qij_C Core antigen; viral capsid protein, icosahedral virus; 8.90A {Hepatitis b virus subtype adyw}
Probab=27.68 E-value=16 Score=24.69 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=3.5
Q ss_pred HHHHHHHhcCCCC
Q 033601 59 FIALVGVFGMNIT 71 (115)
Q Consensus 59 ~t~i~g~fGMN~~ 71 (115)
.|.|++++||+++
T Consensus 1 ~~~~~WLWGMDID 13 (157)
T 2qij_C 1 MTMITDSLEFHID 13 (157)
T ss_dssp ---------CCCC
T ss_pred CceeeeecccccC
Confidence 3689999999996
No 35
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=27.30 E-value=56 Score=24.10 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhccc
Q 033601 98 FLYAAAIAWYKYKRLL 113 (115)
Q Consensus 98 ~~~~~~~~~fk~k~wl 113 (115)
+++.++.++.||+.|-
T Consensus 239 ~il~~l~y~~kr~~W~ 254 (263)
T 2yiu_B 239 IVLAALLYLTNKKLWQ 254 (263)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344566777888773
No 36
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=27.10 E-value=2e+02 Score=24.56 Aligned_cols=19 Identities=16% Similarity=0.516 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 033601 53 TLVISAFIALVGVFGMNIT 71 (115)
Q Consensus 53 t~i~~p~t~i~g~fGMN~~ 71 (115)
.++++..|.+.|+..|-+.
T Consensus 974 pil~t~ltt~~g~~pl~~~ 992 (1057)
T 4dx5_A 974 PILMTSLAFILGVMPLVIS 992 (1057)
T ss_dssp HHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666554
No 37
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=25.61 E-value=63 Score=23.58 Aligned_cols=15 Identities=13% Similarity=0.020 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHhcc
Q 033601 98 FLYAAAIAWYKYKRL 112 (115)
Q Consensus 98 ~~~~~~~~~fk~k~w 112 (115)
+++.++.++.||+.|
T Consensus 217 ~il~~l~y~~kr~~W 231 (248)
T 3cx5_D 217 SSLYLLSIWVKKFKW 231 (248)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 334456677788777
No 38
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=24.82 E-value=67 Score=23.33 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcc
Q 033601 98 FLYAAAIAWYKYKRL 112 (115)
Q Consensus 98 ~~~~~~~~~fk~k~w 112 (115)
+++.++.++.||+.|
T Consensus 213 ~il~~l~y~~kr~~W 227 (241)
T 1pp9_D 213 GLLLPLVYAMKRHKW 227 (241)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 334456667788777
No 39
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.65 E-value=87 Score=16.59 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 033601 11 DGIVNKLSTLREYVDDTEDYINI 33 (115)
Q Consensus 11 ~~~~~~~~~l~~~i~~~~~~~~~ 33 (115)
++++++++.+...|+-+++-++-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~ 27 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISK 27 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666553
No 40
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=23.57 E-value=1.6e+02 Score=20.13 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033601 3 LEAYFVQVDGIVNKLSTLREYVDDTEDYINIM 34 (115)
Q Consensus 3 Le~Y~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 34 (115)
++.++++++++...++.+.+.++.+.......
T Consensus 42 m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~ 73 (279)
T 3c98_B 42 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI 73 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999888888887777776665443
No 41
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=22.71 E-value=1.6e+02 Score=20.83 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 033601 10 VDGIVNKLSTLREYVDDTEDYINIMLDD 37 (115)
Q Consensus 10 ~~~~~~~~~~l~~~i~~~~~~~~~~l~~ 37 (115)
++|+...+.++.|.++..+|.++..+|.
T Consensus 239 l~Dv~dh~~~~~e~~~~~re~l~~l~d~ 266 (280)
T 4egw_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDI 266 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555543
No 42
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=21.90 E-value=82 Score=23.12 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhccc
Q 033601 98 FLYAAAIAWYKYKRLL 113 (115)
Q Consensus 98 ~~~~~~~~~fk~k~wl 113 (115)
+++.++.++.||+.|=
T Consensus 236 ~il~~l~y~~kr~~W~ 251 (258)
T 1zrt_D 236 GLLSVMLYLTNKRLWA 251 (258)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344566777888773
No 43
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.88 E-value=1.7e+02 Score=22.23 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 033601 15 NKLSTLREYVDDTEDYINI 33 (115)
Q Consensus 15 ~~~~~l~~~i~~~~~~~~~ 33 (115)
+.++++.+.|.+++..+.+
T Consensus 386 ~~~~~~~~~i~~~~~~~~~ 404 (463)
T 2xz3_A 386 QDQQRLITAINQTHYNLLN 404 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 44
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=21.69 E-value=1e+02 Score=18.98 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=6.6
Q ss_pred HHHHHHHhH
Q 033601 36 DDKQNNLLQ 44 (115)
Q Consensus 36 ~~~~N~~m~ 44 (115)
|..||..|+
T Consensus 63 dS~Rv~al~ 71 (90)
T 4err_A 63 TSGRNQALT 71 (90)
T ss_dssp SCHHHHHHH
T ss_pred chhhHHHHH
Confidence 577887766
No 45
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=21.25 E-value=85 Score=23.19 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhcc
Q 033601 99 LYAAAIAWYKYKRL 112 (115)
Q Consensus 99 ~~~~~~~~fk~k~w 112 (115)
++.++.++.||+.|
T Consensus 239 il~~l~y~~kr~~W 252 (269)
T 2qjy_B 239 VLSVLLYLTNKRLW 252 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33456667787777
No 46
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=20.64 E-value=3.3e+02 Score=21.81 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 033601 10 VDGIVNKLSTLREYVDDTEDYINIMLDDKQNNLLQMGVMLTTATLVISAFIALVGVFGMNITIEL 74 (115)
Q Consensus 10 ~~~~~~~~~~l~~~i~~~~~~~~~~l~~~~N~~m~~~l~Lti~t~i~~p~t~i~g~fGMN~~~~~ 74 (115)
+.++.+.+..+--.++.++|.++..+....|++-=--.-..+....-.=.+=++.+||=|+.+|.
T Consensus 140 v~~l~~g~~~l~~av~~lQd~IN~~i~PaIn~l~C~v~~~~lgi~L~~YltElttvFg~qitnPa 204 (490)
T 1ztm_A 140 VQSVQSSIGNLIVAIKSVQDYVNKEIVPSIARLGCEAAGLQLGIALTQHYSELTNIFGDNIGSLQ 204 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccCChh
Confidence 34444555556666777788888777655554321000122222222336667777888888775
Done!