Query 033603
Match_columns 115
No_of_seqs 156 out of 883
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:10:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 1.6E-28 3.4E-33 158.8 4.2 89 24-112 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.6 5.8E-16 1.3E-20 96.7 3.1 68 26-103 1-70 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 1.9E-14 4.1E-19 86.9 2.1 62 33-99 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.3 1.7E-13 3.7E-18 88.5 -0.5 69 23-103 19-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 2.2E-12 4.9E-17 79.3 2.7 58 31-102 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.1 1E-10 2.3E-15 71.9 3.4 69 26-103 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.9 2.5E-11 5.4E-16 77.8 -4.6 70 27-111 9-90 (90)
8 PF14547 Hydrophob_seed: Hydro 92.3 0.086 1.9E-06 33.8 1.6 71 31-111 7-84 (85)
9 cd01958 HPS_like HPS_like: Hyd 90.6 0.3 6.5E-06 31.3 2.7 71 26-102 4-80 (85)
10 PF07172 GRP: Glycine rich pro 63.1 6.2 0.00013 25.7 1.9 8 1-8 1-8 (95)
11 PRK13733 conjugal transfer pro 31.8 64 0.0014 23.3 3.2 28 1-28 1-30 (171)
12 PF05617 Prolamin_like: Prolam 21.1 52 0.0011 19.4 0.9 16 45-60 26-41 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.95 E-value=1.6e-28 Score=158.76 Aligned_cols=89 Identities=66% Similarity=1.213 Sum_probs=83.2
Q ss_pred CCccccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603 24 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY 103 (115)
Q Consensus 24 ~~C~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~ 103 (115)
.+|..+...|.||++|++|++..|+++||++++++++.++|+.||+..|+|+++.+.++++||.+|+.+||++||+++||
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 36899999999999999998778999999999999999999999999999998877777669999999999999999999
Q ss_pred CCCCCCCCC
Q 033603 104 KISPNTDCS 112 (115)
Q Consensus 104 ~i~~~~dC~ 112 (115)
||+++|||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.60 E-value=5.8e-16 Score=96.72 Aligned_cols=68 Identities=25% Similarity=0.546 Sum_probs=54.4
Q ss_pred ccccccCccccHHHHhcCC--CCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCCCHHHHhhchhhcCCCCCC
Q 033603 26 CGQVTGSLAPCIAFLRTGG--RFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPY 103 (115)
Q Consensus 26 C~~~~~~L~pCl~yl~g~~--~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~in~~~a~~LP~~Cgv~~p~ 103 (115)
|+..+..|.||++|+++++ ..|+..||+++|+++ ++ |+|.+.....++.||.++|.+||++||+++|.
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------LP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------cC--CEeeccCCCcccccCHHHHHHHHHHcCCCCCC
Confidence 4555578999999999876 368999999999842 33 99986655445569999999999999999873
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.47 E-value=1.9e-14 Score=86.91 Aligned_cols=62 Identities=39% Similarity=0.852 Sum_probs=47.9
Q ss_pred ccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceeeccccccCCCC-CHHHHhhchhhcCC
Q 033603 33 LAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGI-NANVAAGLPRQCGV 99 (115)
Q Consensus 33 L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~~i-n~~~a~~LP~~Cgv 99 (115)
|.||++|++|++..|+++||++++++++. |++..|.++++......++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 57999999988668999999999998753 3444444466655443344 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.32 E-value=1.7e-13 Score=88.46 Aligned_cols=69 Identities=35% Similarity=0.813 Sum_probs=43.2
Q ss_pred CCCccccccCcccc---HHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--ecccc-ccCCCCCHHHHhhchhh
Q 033603 23 AITCGQVTGSLAPC---IAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAY-RSIPGINANVAAGLPRQ 96 (115)
Q Consensus 23 ~~~C~~~~~~L~pC---l~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~-~~~~~in~~~a~~LP~~ 96 (115)
..+|.+ .|.|| +.|+.++. .||++||+++|++.+. +..|+| +++.. ..+ +||.+|+.+||++
T Consensus 19 ~~~c~~---~l~~c~~~~~~~~~~~-~Ps~~CC~~l~~~~~~-------~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~ 86 (96)
T PF14368_consen 19 CCSCAN---SLLPCCPCLCYVTGGP-APSAACCSALKSVVQA-------DPPCLCQLLNSPGAPGF-GINVTRALALPAA 86 (96)
T ss_dssp TTB-HC---CCCHH--HHHHHCC------HHHHHHHCC-----------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHH
T ss_pred cchhHH---HHhccccchhccCCCC-CCCHHHHHHHHHhccC-------CCCCHHHhcCccccccC-CcCHHHHHHHHHH
Confidence 456744 46666 78888554 8999999999998531 345777 44443 334 7999999999999
Q ss_pred cCCCCCC
Q 033603 97 CGVSIPY 103 (115)
Q Consensus 97 Cgv~~p~ 103 (115)
||++.|.
T Consensus 87 Cg~~~~~ 93 (96)
T PF14368_consen 87 CGVPVPP 93 (96)
T ss_dssp CTSS-S-
T ss_pred cCCCCCC
Confidence 9999885
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.28 E-value=2.2e-12 Score=79.25 Aligned_cols=58 Identities=29% Similarity=0.708 Sum_probs=47.3
Q ss_pred cCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCcccceee--ccc-cccCCCCCHHHHhhchhhcCCCCC
Q 033603 31 GSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCL--KQA-YRSIPGINANVAAGLPRQCGVSIP 102 (115)
Q Consensus 31 ~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~--~~~-~~~~~~in~~~a~~LP~~Cgv~~p 102 (115)
+.|.+|++|++++. .||++||+.+|+ |..|+|. ++. +.++ ||.++|.+||++||+++|
T Consensus 4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGS-PPSAACCAKLKE-----------QQSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCC-CCCHHHHHHHhc-----------CCCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence 37999999999775 799999999997 2369994 332 2334 899999999999999986
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.08 E-value=1e-10 Score=71.85 Aligned_cols=69 Identities=48% Similarity=0.936 Sum_probs=52.6
Q ss_pred ccccccCccccHHHHhcC--CCCCCcccccchhhhhcccCCCcCCcccceeeccc--cccCCC---CCHHHHhhchhhcC
Q 033603 26 CGQVTGSLAPCIAFLRTG--GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQA--YRSIPG---INANVAAGLPRQCG 98 (115)
Q Consensus 26 C~~~~~~L~pCl~yl~g~--~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~--~~~~~~---in~~~a~~LP~~Cg 98 (115)
|......+.+|.+|++++ ...|+.+||++++.+. ...|+|.... ...+.. ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 556666778999999987 4578899999999984 2469996432 222211 58999999999999
Q ss_pred CCCCC
Q 033603 99 VSIPY 103 (115)
Q Consensus 99 v~~p~ 103 (115)
+..++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99875
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.90 E-value=2.5e-11 Score=77.76 Aligned_cols=70 Identities=40% Similarity=0.861 Sum_probs=52.8
Q ss_pred cccccCccccHHHHhcCCCCCCcccccchhhhhcccCCCcCCccccee--eccccccC----------CCCCHHHHhhch
Q 033603 27 GQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSI----------PGINANVAAGLP 94 (115)
Q Consensus 27 ~~~~~~L~pCl~yl~g~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~~----------~~in~~~a~~LP 94 (115)
......+.+|.+|++++...|+..||++|+++.. .|+| ++...... .+++..+|.+||
T Consensus 9 ~~~~~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~----------~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP 78 (90)
T PF00234_consen 9 SPVQVRLSPCLPYLQGGCQQPSQQCCQQLRQLDP----------QCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP 78 (90)
T ss_dssp GTTSSHHHGGHHHHTTSSSHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred hhccccccccHHHHhcccccchHHHhHHHHHHhH----------HhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3333458999999999866799999999999843 4676 44433321 258899999999
Q ss_pred hhcCCCCCCCCCCCCCC
Q 033603 95 RQCGVSIPYKISPNTDC 111 (115)
Q Consensus 95 ~~Cgv~~p~~i~~~~dC 111 (115)
+.||+++|+ +||
T Consensus 79 ~~C~v~~~~-----~~C 90 (90)
T PF00234_consen 79 SMCNVSPPY-----TDC 90 (90)
T ss_dssp HHTTSSSSS-----S-G
T ss_pred HHCCCCCCC-----CCC
Confidence 999999997 666
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=92.30 E-value=0.086 Score=33.81 Aligned_cols=71 Identities=27% Similarity=0.533 Sum_probs=44.0
Q ss_pred cCccccHHHHhc----CCCCCCcccccchhhhhcccCCCcCCccccee--eccccccCCCCCHH-HHhhchhhcCCCCCC
Q 033603 31 GSLAPCIAFLRT----GGRFPPPPCCNGVRSLNGAARTTPDRQAACNC--LKQAYRSIPGINAN-VAAGLPRQCGVSIPY 103 (115)
Q Consensus 31 ~~L~pCl~yl~g----~~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--~~~~~~~~~~in~~-~a~~LP~~Cgv~~p~ 103 (115)
..|.-|.+.+.. .+..+..+||+-++.|.+. --+.|+| +|...-.+-++|.+ ....|-..||...|
T Consensus 7 lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p- 79 (85)
T PF14547_consen 7 LKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP- 79 (85)
T ss_pred hhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc-
Confidence 367778888711 1124678999999998653 1357999 44332221123332 45577788999887
Q ss_pred CCCCCCCC
Q 033603 104 KISPNTDC 111 (115)
Q Consensus 104 ~i~~~~dC 111 (115)
++|.|
T Consensus 80 ---~gf~C 84 (85)
T PF14547_consen 80 ---SGFTC 84 (85)
T ss_pred ---CCCcC
Confidence 66666
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=90.56 E-value=0.3 Score=31.33 Aligned_cols=71 Identities=27% Similarity=0.489 Sum_probs=41.5
Q ss_pred ccccccCccccHHHHhcC----CCCCCcccccchhhhhcccCCCcCCcccceeeccccccCC-CCCHH-HHhhchhhcCC
Q 033603 26 CGQVTGSLAPCIAFLRTG----GRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIP-GINAN-VAAGLPRQCGV 99 (115)
Q Consensus 26 C~~~~~~L~pCl~yl~g~----~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C~~~~~~~~~-~in~~-~a~~LP~~Cgv 99 (115)
|......|.-|..-+..- +..|..+||.-++.+.+. | -+.|+|-..-++.++ ++|.+ +..-|-..||-
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl-----d-AA~CLCtaikan~lgi~~~~pv~l~llln~CGk 77 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL-----D-AAVCLCTAIKANILGISINIPVALSLLLNSCGR 77 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh-----h-eeeeeeeeeeccccCcccccChhHHHHHHHHcC
Confidence 443334566777766421 225668999999988653 1 367999532222221 23333 34455667999
Q ss_pred CCC
Q 033603 100 SIP 102 (115)
Q Consensus 100 ~~p 102 (115)
..|
T Consensus 78 ~~P 80 (85)
T cd01958 78 NVP 80 (85)
T ss_pred cCC
Confidence 887
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=63.11 E-value=6.2 Score=25.66 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=4.3
Q ss_pred CchhHHHH
Q 033603 1 MAALKLVC 8 (115)
Q Consensus 1 M~~~~~~~ 8 (115)
|+.+++++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 88544443
No 11
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=31.80 E-value=64 Score=23.29 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHHHHhc-CccC-CCCccc
Q 033603 1 MAALKLVCALLLCILVTA-PVTN-AITCGQ 28 (115)
Q Consensus 1 M~~~~~~~~~~~~~~~~~-~~~~-~~~C~~ 28 (115)
||.+++++++..+++|.. +.-+ ..+|+.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg~~s~f~C~~ 30 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAGTNSEFECNA 30 (171)
T ss_pred CchhhHHHHHHHHHHhccccCCCCCCCCCC
Confidence 776665555444455542 2112 456764
No 12
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=21.15 E-value=52 Score=19.38 Aligned_cols=16 Identities=19% Similarity=0.675 Sum_probs=13.2
Q ss_pred CCCCcccccchhhhhc
Q 033603 45 RFPPPPCCNGVRSLNG 60 (115)
Q Consensus 45 ~~Ps~~CC~~v~~l~~ 60 (115)
...+.+||..+..+.+
T Consensus 26 ~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 26 KNIGPECCKAINKMGK 41 (70)
T ss_pred CCCChHHHHHHHHHhH
Confidence 4688999999998754
Done!