Query 033604
Match_columns 115
No_of_seqs 107 out of 170
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09340 NuA4: Histone acetylt 100.0 1.5E-36 3.3E-41 206.7 6.0 80 13-92 1-80 (80)
2 KOG3856 Uncharacterized conser 99.9 3.2E-28 7E-33 178.8 3.5 89 7-97 10-98 (135)
3 KOG3856 Uncharacterized conser 88.5 0.13 2.8E-06 38.5 -0.1 71 23-97 33-113 (135)
4 PF14782 BBS2_C: Ciliary BBSom 79.4 3.9 8.5E-05 35.5 5.0 35 7-41 54-88 (431)
5 PF13864 Enkurin: Calmodulin-b 78.6 3.5 7.5E-05 28.3 3.6 26 19-44 72-97 (98)
6 KOG3564 GTPase-activating prot 74.4 11 0.00025 34.0 6.5 49 11-61 74-123 (604)
7 PF03285 Paralemmin: Paralemmi 68.0 6.3 0.00014 32.7 3.3 36 13-48 2-37 (278)
8 KOG3129 26S proteasome regulat 66.5 9.4 0.0002 31.0 3.9 31 7-37 14-44 (231)
9 TIGR02976 phageshock_pspB phag 60.3 17 0.00036 24.5 3.7 30 7-36 35-64 (75)
10 PF06667 PspB: Phage shock pro 58.7 19 0.0004 24.4 3.7 33 5-37 33-65 (75)
11 PRK00888 ftsB cell division pr 58.1 21 0.00046 25.1 4.1 41 9-49 29-71 (105)
12 PF10146 zf-C4H2: Zinc finger- 57.6 18 0.00039 28.9 4.1 34 11-44 36-69 (230)
13 PRK09458 pspB phage shock prot 55.4 23 0.00049 24.2 3.7 33 8-41 36-68 (75)
14 PRK13182 racA polar chromosome 54.2 18 0.0004 27.7 3.5 30 18-47 119-151 (175)
15 PF09403 FadA: Adhesion protei 53.8 7 0.00015 28.8 1.1 47 12-63 57-103 (126)
16 TIGR02894 DNA_bind_RsfA transc 52.7 29 0.00064 26.8 4.4 33 12-44 109-141 (161)
17 TIGR03807 RR_fam_repeat putati 52.2 5.7 0.00012 22.2 0.3 18 40-57 7-25 (27)
18 PTZ00464 SNF-7-like protein; P 52.1 26 0.00055 27.7 4.1 35 12-46 59-93 (211)
19 PF11461 RILP: Rab interacting 51.8 22 0.00048 23.2 3.1 30 13-42 2-31 (60)
20 PTZ00446 vacuolar sorting prot 47.7 37 0.00081 26.6 4.4 32 13-44 66-97 (191)
21 PF05384 DegS: Sensor protein 47.4 43 0.00093 25.5 4.6 31 12-42 96-126 (159)
22 PF12999 PRKCSH-like: Glucosid 46.1 45 0.00098 25.9 4.6 28 15-42 147-174 (176)
23 PF04380 BMFP: Membrane fusoge 45.1 56 0.0012 21.8 4.4 19 24-42 60-78 (79)
24 PF13600 DUF4140: N-terminal d 44.9 53 0.0011 22.1 4.3 27 13-39 69-95 (104)
25 PF05814 DUF843: Baculovirus p 44.5 24 0.00052 24.5 2.6 29 5-33 48-76 (83)
26 PRK05431 seryl-tRNA synthetase 44.2 24 0.00051 30.3 3.0 37 18-54 70-106 (425)
27 TIGR01834 PHA_synth_III_E poly 44.2 42 0.0009 28.4 4.4 33 10-42 285-317 (320)
28 PF10845 DUF2576: Protein of u 43.8 32 0.00069 21.6 2.8 22 22-43 12-33 (48)
29 PF02403 Seryl_tRNA_N: Seryl-t 43.7 33 0.00072 23.3 3.2 37 18-54 71-107 (108)
30 PF11855 DUF3375: Protein of u 43.2 38 0.00083 29.5 4.2 30 6-35 136-165 (478)
31 PF04568 IATP: Mitochondrial A 42.2 59 0.0013 23.1 4.3 27 15-41 70-96 (100)
32 cd04772 HTH_TioE_rpt1 First He 41.3 47 0.001 22.6 3.6 25 12-36 74-98 (99)
33 PF04111 APG6: Autophagy prote 41.2 57 0.0012 26.9 4.7 36 12-47 62-100 (314)
34 PF04568 IATP: Mitochondrial A 40.7 73 0.0016 22.6 4.6 25 13-37 71-99 (100)
35 TIGR00414 serS seryl-tRNA synt 40.5 30 0.00065 29.6 3.1 40 16-55 71-110 (418)
36 KOG3231 Predicted assembly/vac 39.9 53 0.0012 26.0 4.1 30 11-40 19-48 (208)
37 PF12761 End3: Actin cytoskele 39.8 63 0.0014 25.6 4.5 31 12-42 133-181 (195)
38 PF12240 Angiomotin_C: Angiomo 38.9 31 0.00067 27.6 2.7 33 14-49 60-92 (205)
39 PF08826 DMPK_coil: DMPK coile 38.8 1.1E+02 0.0023 19.9 4.8 29 11-39 29-57 (61)
40 PF07323 DUF1465: Protein of u 37.5 67 0.0015 24.5 4.3 35 6-40 101-135 (156)
41 cd04776 HTH_GnyR Helix-Turn-He 37.3 88 0.0019 22.0 4.6 19 18-36 84-102 (118)
42 PF04977 DivIC: Septum formati 37.0 81 0.0018 19.7 4.1 39 10-48 20-60 (80)
43 PRK05771 V-type ATP synthase s 36.5 66 0.0014 28.7 4.7 30 12-41 98-127 (646)
44 PF14703 DUF4463: Domain of un 36.3 74 0.0016 20.3 3.9 26 14-39 6-31 (85)
45 PF03148 Tektin: Tektin family 36.3 63 0.0014 27.3 4.3 38 9-46 246-283 (384)
46 PF02370 M: M protein repeat; 35.9 71 0.0015 16.9 3.2 16 22-37 2-17 (21)
47 PF12781 AAA_9: ATP-binding dy 35.6 45 0.00099 26.2 3.2 36 14-55 173-208 (228)
48 PRK03947 prefoldin subunit alp 34.3 86 0.0019 22.3 4.2 34 12-45 4-37 (140)
49 PF01920 Prefoldin_2: Prefoldi 34.3 1E+02 0.0022 20.3 4.4 26 17-42 65-90 (106)
50 PRK13182 racA polar chromosome 33.4 1.1E+02 0.0025 23.4 5.0 31 8-38 79-109 (175)
51 PF11180 DUF2968: Protein of u 32.5 1E+02 0.0022 24.5 4.6 32 12-43 152-183 (192)
52 PF14584 DUF4446: Protein of u 32.3 1.4E+02 0.0031 22.4 5.2 55 8-64 40-94 (151)
53 PF10393 Matrilin_ccoil: Trime 31.9 1.3E+02 0.0028 18.6 4.5 25 13-37 22-46 (47)
54 PF10458 Val_tRNA-synt_C: Valy 31.8 1.4E+02 0.0029 18.9 4.5 24 13-36 3-26 (66)
55 COG3750 Uncharacterized protei 31.7 1.3E+02 0.0029 20.9 4.6 28 12-39 12-39 (85)
56 PF14193 DUF4315: Domain of un 31.5 1.4E+02 0.0029 20.5 4.6 43 11-59 5-47 (83)
57 COG0718 Uncharacterized protei 31.1 94 0.002 22.3 3.9 30 15-44 6-35 (105)
58 PF06698 DUF1192: Protein of u 30.5 57 0.0012 21.1 2.5 18 25-42 25-42 (59)
59 PF13600 DUF4140: N-terminal d 30.4 1.1E+02 0.0024 20.5 4.1 31 9-39 72-102 (104)
60 KOG3478 Prefoldin subunit 6, K 29.8 69 0.0015 23.7 3.1 43 12-56 17-63 (120)
61 COG1382 GimC Prefoldin, chaper 29.7 1.4E+02 0.003 21.9 4.7 42 12-55 18-63 (119)
62 PRK14127 cell division protein 29.1 1.2E+02 0.0027 21.7 4.3 29 14-42 37-65 (109)
63 PF09278 MerR-DNA-bind: MerR, 28.7 98 0.0021 18.8 3.3 25 16-40 38-62 (65)
64 PF09403 FadA: Adhesion protei 28.5 1.4E+02 0.0031 21.9 4.6 27 16-42 95-121 (126)
65 TIGR00293 prefoldin, archaeal 28.2 80 0.0017 21.9 3.2 22 19-40 4-25 (126)
66 COG5481 Uncharacterized conser 28.0 1E+02 0.0022 20.5 3.4 20 18-37 42-61 (67)
67 PF13747 DUF4164: Domain of un 27.9 1.2E+02 0.0026 20.7 3.9 34 8-41 33-66 (89)
68 PHA02107 hypothetical protein 27.9 78 0.0017 25.1 3.3 26 12-37 189-214 (216)
69 PF09932 DUF2164: Uncharacteri 27.8 1.2E+02 0.0026 20.4 3.8 24 18-41 51-74 (76)
70 PF07106 TBPIP: Tat binding pr 27.3 62 0.0013 23.8 2.6 30 5-34 107-136 (169)
71 PF11285 DUF3086: Protein of u 27.0 1.2E+02 0.0026 25.4 4.4 53 13-65 3-59 (283)
72 PF15466 DUF4635: Domain of un 27.0 67 0.0014 24.1 2.6 20 23-42 100-119 (135)
73 PF09032 Siah-Interact_N: Siah 26.9 1.6E+02 0.0034 20.0 4.3 20 23-42 28-47 (79)
74 PF13094 CENP-Q: CENP-Q, a CEN 26.8 1.1E+02 0.0023 22.4 3.7 29 16-44 22-57 (160)
75 COG2919 Septum formation initi 26.7 60 0.0013 23.0 2.3 34 11-49 61-94 (117)
76 KOG0544 FKBP-type peptidyl-pro 26.6 27 0.00057 25.4 0.5 14 50-63 52-65 (108)
77 COG3879 Uncharacterized protei 26.5 1.2E+02 0.0027 24.8 4.4 31 11-41 54-84 (247)
78 smart00055 FCH Fes/CIP4 homolo 26.2 83 0.0018 20.1 2.8 48 12-63 24-75 (87)
79 PF14723 SSFA2_C: Sperm-specif 26.1 1.5E+02 0.0032 23.4 4.5 29 12-40 143-171 (179)
80 PRK13729 conjugal transfer pil 25.2 80 0.0017 28.2 3.2 23 21-43 97-119 (475)
81 PF00170 bZIP_1: bZIP transcri 25.1 1.8E+02 0.0038 18.0 4.6 27 14-40 33-59 (64)
82 PRK14625 hypothetical protein; 25.0 1.3E+02 0.0027 21.6 3.7 27 16-42 4-30 (109)
83 COG3937 Uncharacterized conser 24.9 1.2E+02 0.0026 22.0 3.6 19 24-42 86-104 (108)
84 TIGR02209 ftsL_broad cell divi 24.6 2E+02 0.0043 18.4 4.7 30 11-40 28-57 (85)
85 KOG2685 Cystoskeletal protein 24.6 65 0.0014 28.4 2.5 41 6-46 69-109 (421)
86 PRK13694 hypothetical protein; 24.5 2.1E+02 0.0046 19.9 4.6 30 10-39 8-37 (83)
87 PF04156 IncA: IncA protein; 24.3 1.2E+02 0.0027 22.3 3.7 35 14-48 81-115 (191)
88 COG0749 PolA DNA polymerase I 23.9 1.1E+02 0.0024 28.1 3.9 45 18-62 215-261 (593)
89 PF12269 zf-CpG_bind_C: CpG bi 23.9 1.5E+02 0.0032 24.2 4.3 34 9-42 24-57 (236)
90 cd08638 DNA_pol_A_theta DNA po 23.8 1.2E+02 0.0026 25.5 3.9 23 17-39 7-29 (373)
91 PF05529 Bap31: B-cell recepto 23.8 1.7E+02 0.0036 21.9 4.4 30 15-44 162-191 (192)
92 PF11690 DUF3287: Protein of u 23.8 1.1E+02 0.0024 22.2 3.2 21 22-42 57-79 (109)
93 PRK14624 hypothetical protein; 23.6 1.7E+02 0.0037 21.1 4.2 31 13-43 5-35 (115)
94 KOG2264 Exostosin EXT1L [Signa 23.5 1.1E+02 0.0024 28.8 3.8 34 12-45 91-124 (907)
95 PF04201 TPD52: Tumour protein 23.5 1E+02 0.0022 23.8 3.2 20 21-40 29-48 (162)
96 TIGR02978 phageshock_pspC phag 23.4 1.8E+02 0.0039 21.1 4.3 29 9-44 79-107 (121)
97 PF10073 DUF2312: Uncharacteri 23.4 2.2E+02 0.0048 19.3 4.5 27 13-39 3-29 (74)
98 PRK13729 conjugal transfer pil 23.2 44 0.00095 29.8 1.3 24 14-37 97-120 (475)
99 PF02890 DUF226: Borrelia fami 22.9 1E+02 0.0022 23.3 3.0 28 25-55 107-134 (141)
100 PF09969 DUF2203: Uncharacteri 22.8 1.8E+02 0.0039 20.9 4.2 19 44-62 62-81 (120)
101 COG5478 Predicted small integr 22.8 88 0.0019 23.7 2.6 16 6-21 70-85 (141)
102 PLN02320 seryl-tRNA synthetase 22.8 76 0.0017 28.4 2.7 32 16-47 132-163 (502)
103 PRK14622 hypothetical protein; 22.5 1.5E+02 0.0032 20.8 3.6 27 16-42 3-29 (103)
104 PF02403 Seryl_tRNA_N: Seryl-t 22.5 2.5E+02 0.0055 18.8 4.8 32 8-39 68-99 (108)
105 PF06428 Sec2p: GDP/GTP exchan 22.3 1.4E+02 0.0031 21.0 3.5 35 15-49 2-36 (100)
106 PF14282 FlxA: FlxA-like prote 22.0 1.7E+02 0.0036 20.4 3.8 25 21-45 51-75 (106)
107 COG4942 Membrane-bound metallo 22.0 72 0.0016 28.0 2.3 32 13-44 51-82 (420)
108 PF14257 DUF4349: Domain of un 21.9 1.2E+02 0.0027 23.7 3.5 46 13-58 148-201 (262)
109 COG5317 Uncharacterized protei 21.9 1.5E+02 0.0033 23.0 3.9 33 7-39 114-146 (175)
110 PF13234 rRNA_proc-arch: rRNA- 21.9 1.9E+02 0.0041 22.7 4.5 26 14-39 242-267 (268)
111 KOG4715 SWI/SNF-related matrix 21.7 88 0.0019 27.2 2.7 40 12-51 226-265 (410)
112 PF06305 DUF1049: Protein of u 21.7 1.4E+02 0.003 18.3 3.1 16 23-38 50-65 (68)
113 PF10046 BLOC1_2: Biogenesis o 21.6 2E+02 0.0044 19.6 4.1 8 34-41 72-79 (99)
114 TIGR02338 gimC_beta prefoldin, 21.6 2.3E+02 0.005 19.5 4.5 26 17-42 70-95 (110)
115 PF11488 Lge1: Transcriptional 21.5 2E+02 0.0043 19.0 4.0 26 14-39 37-62 (80)
116 PHA02562 46 endonuclease subun 21.2 1.5E+02 0.0033 25.2 4.1 32 10-41 216-247 (562)
117 smart00338 BRLZ basic region l 21.2 2.2E+02 0.0047 17.6 4.6 29 12-40 31-59 (65)
118 cd05533 POLBc_delta DNA polyme 21.1 2.1E+02 0.0045 24.3 4.9 50 10-62 74-127 (393)
119 cd00890 Prefoldin Prefoldin is 21.1 2.4E+02 0.0053 19.1 4.5 25 17-41 90-114 (129)
120 PRK14626 hypothetical protein; 20.9 1.7E+02 0.0038 20.8 3.8 29 15-43 6-34 (110)
121 PF08946 Osmo_CC: Osmosensory 20.8 1.2E+02 0.0026 19.0 2.5 15 14-28 26-40 (46)
122 PRK05771 V-type ATP synthase s 20.7 2.3E+02 0.005 25.3 5.3 32 9-40 210-241 (646)
123 cd04769 HTH_MerR2 Helix-Turn-H 20.7 2.9E+02 0.0064 18.9 4.9 28 14-41 79-106 (116)
124 COG3418 Flagellar biosynthesis 20.6 2.1E+02 0.0045 21.9 4.3 32 13-44 37-68 (146)
125 PF10805 DUF2730: Protein of u 20.5 2.2E+02 0.0048 19.8 4.2 28 13-40 34-61 (106)
126 PF07195 FliD_C: Flagellar hoo 20.5 2.1E+02 0.0046 22.1 4.5 38 10-47 189-226 (239)
127 TIGR02231 conserved hypothetic 20.4 2E+02 0.0043 24.9 4.7 30 13-42 144-173 (525)
128 PF09177 Syntaxin-6_N: Syntaxi 20.2 2.1E+02 0.0045 19.2 3.9 26 18-43 36-61 (97)
129 TIGR02889 spore_YpeB germinati 20.1 1.6E+02 0.0035 25.7 4.1 60 2-61 116-183 (435)
130 PRK10265 chaperone-modulator p 20.1 2.5E+02 0.0054 19.2 4.4 28 14-41 71-98 (101)
No 1
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=100.00 E-value=1.5e-36 Score=206.66 Aligned_cols=80 Identities=45% Similarity=0.803 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccCCCCCch
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSP 92 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfDgylk~~~~~~~~kr~~~~~d~DRiFS~SS~ts~ 92 (115)
+++|++|+++|++|+++|++||+|||++||+||+++..+||||||||||+++++.+++.+|+++|+++|||||+||+|||
T Consensus 1 k~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~~~~~~~~~~~~~~~~~dRiFS~SS~t~~ 80 (80)
T PF09340_consen 1 KKELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKSSSGAANSRRKRGFTDDDRIFSLSSVTSP 80 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhccccccccccccCCCCccccCcccccccCC
Confidence 47899999999999999999999999999999998888999999999999998766677899999999999999999997
No 2
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=3.2e-28 Score=178.78 Aligned_cols=89 Identities=38% Similarity=0.607 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccC
Q 033604 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSL 86 (115)
Q Consensus 7 ~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfDgylk~~~~~~~~kr~~~~~d~DRiFS~ 86 (115)
+...+++++|.+||++|++|++.|+.||+|||++||+||++|..+||||+||++|+++ ++.+.+|.++|.+.+|+||.
T Consensus 10 ~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsYle~ts~~gniirG~e~~lks--ns~n~rr~r~f~eaerlfs~ 87 (135)
T KOG3856|consen 10 KSYEDTKAELAELIKKRQELEETLANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKS--NSKNDRRNRKFKEAERLFSK 87 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccc--cccchhhhccccHHHHHhhh
Confidence 3456789999999999999999999999999999999999999999999999999998 33456889999999999999
Q ss_pred CCCCchhhhhc
Q 033604 87 SSVTSPAVCTK 97 (115)
Q Consensus 87 SS~ts~~~~e~ 97 (115)
||++++.+..+
T Consensus 88 ss~ss~~~~sp 98 (135)
T KOG3856|consen 88 SSDSSFANNSP 98 (135)
T ss_pred cccccccccCc
Confidence 99999998874
No 3
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.46 E-value=0.13 Score=38.47 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhhcc----------ccccccccccceeecCcccccCCCCCCCCCCCCCCCCCCccccCCCCCch
Q 033604 23 RSRFQDELRNIENQVYELET----------SYLQDIGQFGNAFKGFEGFLSSGKNTSNFKRPRKLQPEDRIFSLSSVTSP 92 (115)
Q Consensus 23 r~~Le~~L~~LE~qIy~~Et----------~YLeeT~~~GNIikGfDgylk~~~~~~~~kr~~~~~d~DRiFS~SS~ts~ 92 (115)
=..|++++=.+|-.-+..-. -||......||+++||+-+-+..+.++ -..|...+|+|+++|.|+.
T Consensus 33 l~nLe~qIY~~EgsYle~ts~~gniirG~e~~lksns~n~rr~r~f~eaerlfs~ss----~ss~~~~sp~~al~s~t~t 108 (135)
T KOG3856|consen 33 LANLERQIYAFEGSYLEDTSNNGNIIRGWERYLKSNSKNDRRNRKFKEAERLFSKSS----DSSFANNSPAFALSSDTYT 108 (135)
T ss_pred HHHHHHHHHHHhhhhhhcccCCCchhhhhhhhccccccchhhhccccHHHHHhhhcc----cccccccCchhcccchhHH
Confidence 34688899998887554432 477765568999999998876533222 3457788999999999987
Q ss_pred hhhhc
Q 033604 93 AVCTK 97 (115)
Q Consensus 93 ~~~e~ 97 (115)
.-...
T Consensus 109 ~~r~~ 113 (135)
T KOG3856|consen 109 KQRHG 113 (135)
T ss_pred HHhcc
Confidence 66544
No 4
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=79.43 E-value=3.9 Score=35.53 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 7 ~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
..+......|++|++||+.|..+|..+|+++-..+
T Consensus 54 ~~~~~~~~~lreL~qkKQ~Ll~EL~nyEe~~~~~~ 88 (431)
T PF14782_consen 54 VDASDEQEALRELSQKKQNLLLELRNYEENAKREK 88 (431)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45567789999999999999999999999999766
No 5
>PF13864 Enkurin: Calmodulin-binding
Probab=78.62 E-value=3.5 Score=28.34 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 19 LVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
...+|..||.+|..||+.|--+|..+
T Consensus 72 ~~~rK~~lE~~L~qlE~dI~~lsr~~ 97 (98)
T PF13864_consen 72 KKRRKEELEKELKQLEKDIKKLSRPK 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46788999999999999998887654
No 6
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=74.36 E-value=11 Score=34.02 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceee-cCccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFK-GFEGF 61 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIik-GfDgy 61 (115)
.+++++..+|++|++++-+++++|.||...---...+.. |||-+ +=+.|
T Consensus 74 ha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~--~s~~~~d~~~f 123 (604)
T KOG3564|consen 74 HARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDIS--GSIQLSDEQKF 123 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--cccccchhhhh
Confidence 358899999999999999999999999887766666665 55543 33333
No 7
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=67.98 E-value=6.3 Score=32.67 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT 48 (115)
++++++=.+|=+.||+.+..||++|-.+|+.=+.-+
T Consensus 2 rrQ~qEDEqKtR~LEesI~RLEkEIe~LE~~es~iS 37 (278)
T PF03285_consen 2 RRQMQEDEQKTRSLEESIHRLEKEIEALENGESQIS 37 (278)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 567777788888999999999999999999766533
No 8
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=66.53 E-value=9.4 Score=31.02 Aligned_cols=31 Identities=13% Similarity=0.354 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 7 RGNSNPAATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 7 ~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
....+++.++++|+.+|++||.+|..+..-+
T Consensus 14 ~ag~~~~~~~~eLm~~K~eiE~qin~~~~vL 44 (231)
T KOG3129|consen 14 MAGANTKSELKELMDKKTEIETQINELVEVL 44 (231)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999998887644
No 9
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=60.33 E-value=17 Score=24.55 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 7 RGNSNPAATLAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 7 ~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~q 36 (115)
.-+.+-.++|.+|.++=++|++++..||+=
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888888888888863
No 10
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=58.69 E-value=19 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=25.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 5 QQRGNSNPAATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 5 ~q~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+|.-+++-.+.|.+|..+=+++++++.+||.=+
T Consensus 33 ~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 33 SQGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455668889999999999999999998644
No 11
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=58.06 E-value=21 Score=25.06 Aligned_cols=41 Identities=7% Similarity=0.106 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccccccc
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELET--SYLQDIG 49 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et--~YLeeT~ 49 (115)
...+++++.++.++-.+|+.+-+.|+.+|..+.. .|+++-.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 4456777777777777888888888889988866 6888765
No 12
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.64 E-value=18 Score=28.94 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+..++...|+..|....++|..|.+.|-.+|..-
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iI 69 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENII 69 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999999999999999888765
No 13
>PRK09458 pspB phage shock protein B; Provisional
Probab=55.44 E-value=23 Score=24.18 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 8 ~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
=+.+=.+.|.+|.++=+++++++.+||. |-|-|
T Consensus 36 Ls~~d~~~L~~L~~~A~rm~~RI~tLE~-ILDae 68 (75)
T PRK09458 36 LSQEEQQRLAQLTEKAERMRERIQALEA-ILDAE 68 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccc
Confidence 3445577899999999999999999996 44443
No 14
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=54.15 E-value=18 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=22.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhccccccc
Q 033604 18 ALVSKRSRFQD---ELRNIENQVYELETSYLQD 47 (115)
Q Consensus 18 ~Ll~kr~~Le~---~L~~LE~qIy~~Et~YLee 47 (115)
+||+.|+++|+ .|.+||+.|...|-.|...
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 56777877775 5667788888888777664
No 15
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=53.81 E-value=7 Score=28.77 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfDgylk 63 (115)
+.+.|.++.+.+..+++.+..|+.. .++.|..+. |+++++-|+.+.+
T Consensus 57 a~~~L~~~~~~~~~i~e~~~kl~~~---~~~r~yk~e--Yk~llk~y~~~~~ 103 (126)
T PF09403_consen 57 AEAELAELKELYAEIEEKIEKLKQD---SKVRWYKDE--YKELLKKYKDLLN 103 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---GGGSTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh---cchhHHHHH--HHHHHHHHHHHHH
Confidence 4566777777777777777777664 677777754 6788888877754
No 16
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=52.71 E-value=29 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+..++.+|.++=+.|+.++..|++++...|..|
T Consensus 109 l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777778888888888777777766
No 17
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=52.17 E-value=5.7 Score=22.20 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=13.8
Q ss_pred hcccccc-ccccccceeec
Q 033604 40 LETSYLQ-DIGQFGNAFKG 57 (115)
Q Consensus 40 ~Et~YLe-eT~~~GNIikG 57 (115)
-.+-|++ ++.-.||||++
T Consensus 7 g~G~y~~~d~~vsGNvIrn 25 (27)
T TIGR03807 7 GWGIYLEFDAVVTGNVIRN 25 (27)
T ss_pred ceEEEEeeeeEEecceecC
Confidence 3567888 67678999986
No 18
>PTZ00464 SNF-7-like protein; Provisional
Probab=52.10 E-value=26 Score=27.70 Aligned_cols=35 Identities=9% Similarity=0.230 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
.+.....+|++|+.++.+|.++..++...|.....
T Consensus 59 ~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ 93 (211)
T PTZ00464 59 HKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFT 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566678899998999888888888888776654
No 19
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=51.84 E-value=22 Score=23.22 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..+|++.|.-|.+|..++--||+++--+-.
T Consensus 2 l~ELr~VL~ERNeLK~~v~~leEEL~~yk~ 31 (60)
T PF11461_consen 2 LQELREVLQERNELKARVFLLEEELAYYKS 31 (60)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999988754443
No 20
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=47.72 E-value=37 Score=26.58 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+.....+|++|+.++.+|.++..++...|+.-
T Consensus 66 k~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~ 97 (191)
T PTZ00446 66 MSNAKILLKRKKLYEQEIENILNNRLTLEDNM 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788778877777666666655543
No 21
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=47.45 E-value=43 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
.+.+-..|..+|..|+..|..|+..|-.-|.
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~ 126 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAEN 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999988775
No 22
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=46.07 E-value=45 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
.+.+..++|++++++|.+|+++|-..+.
T Consensus 147 ~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 147 LIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667888899999999999987765
No 23
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=45.12 E-value=56 Score=21.76 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 033604 24 SRFQDELRNIENQVYELET 42 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy~~Et 42 (115)
.++..+|++||.+|-.+|.
T Consensus 60 ~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 60 ARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456677788888877774
No 24
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=44.88 E-value=53 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
..++.+|-++.+.|++++..++.++-.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~ 95 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQA 95 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 25
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=44.52 E-value=24 Score=24.54 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=23.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 033604 5 QQRGNSNPAATLAALVSKRSRFQDELRNI 33 (115)
Q Consensus 5 ~q~~~~~~~~~L~~Ll~kr~~Le~~L~~L 33 (115)
.+.++.|+..+...-++||++|++.+++|
T Consensus 48 teS~~~dL~t~k~K~~KKK~~ln~afDAi 76 (83)
T PF05814_consen 48 TESTPQDLQTEKAKSIKKKRDLNDAFDAI 76 (83)
T ss_pred CCCcHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 35566778888888899999999998876
No 26
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=44.23 E-value=24 Score=30.28 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccce
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNA 54 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNI 54 (115)
+|+++-++|.++|..+|+++...|....+.....+||
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4555556677777777777777776665543334444
No 27
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=44.16 E-value=42 Score=28.42 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
-.+|++|.++-++=.+|+++++.|+++|-++|.
T Consensus 285 lPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 285 LPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456889999999999999999999999988775
No 28
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=43.83 E-value=32 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 033604 22 KRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 22 kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
.|.+|..+|..|-..+++++|.
T Consensus 12 dreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 12 DREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999999875
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=43.71 E-value=33 Score=23.29 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccce
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNA 54 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNI 54 (115)
+|++.-+.|.+++..+|.++-..|...-.--...+||
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iPNi 107 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEELNELLLSIPNI 107 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455555566666666666666665554443345555
No 30
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=43.20 E-value=38 Score=29.47 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=24.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 6 QRGNSNPAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 6 q~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
...+.|+.+.|..|-++|.+|+.+|+.|+.
T Consensus 136 ~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~a 165 (478)
T PF11855_consen 136 EGTDPDPERRIAELEREIAEIDAEIDRLEA 165 (478)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788899999988888888888888874
No 31
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=42.18 E-value=59 Score=23.07 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+..+|-+-|++|++++..-+++|-++|
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666665555666665554
No 32
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=41.26 E-value=47 Score=22.59 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~q 36 (115)
....+.-|.+++..++++++.|+++
T Consensus 74 ~~~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 74 VASALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555556666666666666654
No 33
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.20 E-value=57 Score=26.94 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYEL---ETSYLQD 47 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~---Et~YLee 47 (115)
+.++|.+|-+.+.+|+++|..+|.+...+ |..|+.+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~ 100 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWRE 100 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888877777765554 4455543
No 34
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=40.67 E-value=73 Score=22.60 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSR----FQDELRNIENQV 37 (115)
Q Consensus 13 ~~~L~~Ll~kr~~----Le~~L~~LE~qI 37 (115)
+.+|+.|=++-.+ .+++|+.||++|
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444 777777888776
No 35
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.55 E-value=30 Score=29.60 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccee
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIi 55 (115)
..+|+++=++|.++|..+|+++...|..+.+.....+|++
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~ 110 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIP 110 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4456666677788888888888888877766544445554
No 36
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.85 E-value=53 Score=26.04 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
.+|+.-+++...|+++|++-.+||.+|-..
T Consensus 19 eLRkt~RdierdRr~me~~Ek~LElEIkk~ 48 (208)
T KOG3231|consen 19 ELRKTQRDIERDRRAMEKQEKQLELEIKKM 48 (208)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677789999999999999999999764
No 37
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.83 E-value=63 Score=25.62 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHhhcc
Q 033604 12 PAATLAALVS-KRSRF-----------------QDELRNIENQVYELET 42 (115)
Q Consensus 12 ~~~~L~~Ll~-kr~~L-----------------e~~L~~LE~qIy~~Et 42 (115)
.+.+|.+||. |+++| .++|..||+||--+|.
T Consensus 133 vk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~ 181 (195)
T PF12761_consen 133 VKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLES 181 (195)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4889999998 55444 4578889999888774
No 38
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=38.86 E-value=31 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~ 49 (115)
..|++++ ++=|+++-+||..+-.-|..||+++.
T Consensus 60 ~~L~~~L---rEkEErILaLEad~~kWEqkYLEEs~ 92 (205)
T PF12240_consen 60 SNLKELL---REKEERILALEADMTKWEQKYLEESA 92 (205)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 44578999999999999999999874
No 39
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.77 E-value=1.1e+02 Score=19.89 Aligned_cols=29 Identities=10% Similarity=0.252 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
.+...|++.-++.+.|..++..|++++-.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888754
No 40
>PF07323 DUF1465: Protein of unknown function (DUF1465); InterPro: IPR010848 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.; PDB: 3CTW_D.
Probab=37.52 E-value=67 Score=24.47 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=25.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 6 q~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
-+....+...|++||.+=..|.+.+..|+..||.-
T Consensus 101 ~~~~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~~ 135 (156)
T PF07323_consen 101 PPGWAELPEGLRALIERSERLYERVARLDRMIYEP 135 (156)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred chhhhhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34567789999999999999999999999999985
No 41
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=37.34 E-value=88 Score=21.95 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033604 18 ALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~q 36 (115)
.+.++...|+.+++.|+..
T Consensus 84 ~l~~~~~~l~~~~~~l~~~ 102 (118)
T cd04776 84 KIEKRRAELEQQRRDIDAA 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 42
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.03 E-value=81 Score=19.68 Aligned_cols=39 Identities=13% Similarity=0.340 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYEL--ETSYLQDI 48 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~--Et~YLeeT 48 (115)
-.+++++.++-++-.++..+...|+.+|-.+ --.|++.-
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~ 60 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3456677777777777777777777777776 34555543
No 43
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=36.46 E-value=66 Score=28.72 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+.+++.++.+++++|+++++.+++++-..|
T Consensus 98 ~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~ 127 (646)
T PRK05771 98 IEKEIKELEEEISELENEIKELEQEIERLE 127 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677788888888888888888887665
No 44
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=36.35 E-value=74 Score=20.34 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
..|..|+.+|+++...|+.-+.....
T Consensus 6 ~~L~~Lv~~R~~~~~kLE~a~~~~~~ 31 (85)
T PF14703_consen 6 SKLEKLVEEREKAVRKLESAESKYLK 31 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999998888877765533
No 45
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.31 E-value=63 Score=27.29 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
...+++.+.++..-|.+|+.+|.+++++|.+.|..+-.
T Consensus 246 n~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~ 283 (384)
T PF03148_consen 246 NAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIED 283 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999998877643
No 46
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=35.86 E-value=71 Score=16.88 Aligned_cols=16 Identities=6% Similarity=0.345 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033604 22 KRSRFQDELRNIENQV 37 (115)
Q Consensus 22 kr~~Le~~L~~LE~qI 37 (115)
.|++||.++.+||.+-
T Consensus 2 akk~lEa~~qkLe~e~ 17 (21)
T PF02370_consen 2 AKKQLEADHQKLEAEK 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4677888888888764
No 47
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=35.58 E-value=45 Score=26.18 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccee
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIi 55 (115)
++-.+|++...+...+|..||++|-.. |..+ -|||+
T Consensus 173 ~~r~~L~~~~~~~k~~L~~lEd~lL~~----Ls~s--~g~iL 208 (228)
T PF12781_consen 173 EQRNELLKEIAENKIQLKELEDQLLEL----LSNS--EGNIL 208 (228)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH----CCCT--SSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhC--CCCcc
Confidence 334444444445555555555555432 2233 47776
No 48
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.34 E-value=86 Score=22.27 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YL 45 (115)
.+.+|..|+...+++..++..|..+|-..+..--
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 37 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASIN 37 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888877777665543
No 49
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.27 E-value=1e+02 Score=20.25 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..|-.+...++.++..|+.++-..+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~ 90 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEK 90 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555444443
No 50
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.44 E-value=1.1e+02 Score=23.37 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 8 GNSNPAATLAALVSKRSRFQDELRNIENQVY 38 (115)
Q Consensus 8 ~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy 38 (115)
+...+...+.-|.+++..|+++|+.||.++-
T Consensus 79 G~~t~~~R~~lLe~~~~~l~~ri~eLe~~l~ 109 (175)
T PRK13182 79 VQNISSVDFEQLEAQLNTITRRLDELERQLQ 109 (175)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566666777777777777776644
No 51
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.47 E-value=1e+02 Score=24.49 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
.+++...|-..|.....+|.+|..+|-.+|..
T Consensus 152 ~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 152 ARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999999998864
No 52
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=32.26 E-value=1.4e+02 Score=22.35 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCcccccC
Q 033604 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEGFLSS 64 (115)
Q Consensus 8 ~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfDgylk~ 64 (115)
+..++...|.++.++=.++.++++.++++|-..|..--......| |+ =||.|-..
T Consensus 40 ~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvg-vv-RYnAF~dm 94 (151)
T PF14584_consen 40 DGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVG-VV-RYNAFEDM 94 (151)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEE-EE-EccCcccc
Confidence 445788889999999999999999999999999998877666566 44 47776554
No 53
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=31.95 E-value=1.3e+02 Score=18.65 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
...|..|-.+=..+.++|+.||.+|
T Consensus 22 ~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 22 TSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455555555456666677777665
No 54
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=31.80 E-value=1.4e+02 Score=18.93 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~q 36 (115)
.+++.-|-++..+++.++..++..
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 55
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.73 E-value=1.3e+02 Score=20.93 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
...+|++.|.+=..||++-+.|-.+|-+
T Consensus 12 a~~QLrafIerIERlEeEk~~i~~dikd 39 (85)
T COG3750 12 AAGQLRAFIERIERLEEEKKTIADDIKD 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998865
No 56
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.45 E-value=1.4e+02 Score=20.51 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFE 59 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfD 59 (115)
.+.+++...-.|+.+++..|..||.|+-..|-. ..-.||||+.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~------EIv~~VR~~~ 47 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAENL------EIVQMVRSMK 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcC
Confidence 355666667777778888888888887776642 2445666664
No 57
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.14 E-value=94 Score=22.27 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
.+..|.++=+++++++.++|++|.+.|-++
T Consensus 6 ~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~g 35 (105)
T COG0718 6 DMQKLMKQAQQMQKKMQKMQEELAQKEVTG 35 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcEEee
Confidence 466777888899999999999999988654
No 58
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=30.47 E-value=57 Score=21.13 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 033604 25 RFQDELRNIENQVYELET 42 (115)
Q Consensus 25 ~Le~~L~~LE~qIy~~Et 42 (115)
+|++.++.||.+|-..|+
T Consensus 25 EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 59
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=30.37 E-value=1.1e+02 Score=20.49 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
...++++|+++-.++..+..++..++.+|--
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888888888999999999998888753
No 60
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=69 Score=23.67 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----cccceee
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG----QFGNAFK 56 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~----~~GNIik 56 (115)
+.+.|...+.-|++|+.+|. |..|-..|-.-|++.+ ..|+|+-
T Consensus 17 LQk~l~k~~~~rqkle~qL~--Enk~V~~Eldlle~d~~VYKliGpvLv 63 (120)
T KOG3478|consen 17 LQKELEKYVESRQKLETQLQ--ENKIVLEELDLLEEDSNVYKLIGPVLV 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhcccchHHHHhcchhh
Confidence 45555666666666666654 5667777888888655 2565543
No 61
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=1.4e+02 Score=21.94 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----ccccee
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG----QFGNAF 55 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~----~~GNIi 55 (115)
++.+|..++..|.+++.+|..+++-+-.+|. |++.. ..||++
T Consensus 18 Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~--l~eD~~vYk~VG~ll 63 (119)
T COG1382 18 LQQQLQKVILQKQQLEAQLKEIEKALEELEK--LDEDAPVYKKVGNLL 63 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcccHHHHHhhhHH
Confidence 4566777777777777777777666555443 44332 256654
No 62
>PRK14127 cell division protein GpsB; Provisional
Probab=29.08 E-value=1.2e+02 Score=21.73 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..+..|++....|.+++..|+.+|-.++.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777766665
No 63
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=28.67 E-value=98 Score=18.77 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 16 LAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
..-+..++++++++++.|+.-...+
T Consensus 38 ~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 38 RALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777776666554443
No 64
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=28.46 E-value=1.4e+02 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
|+..-.-+++|+++++.-|+.|.++|.
T Consensus 95 lk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 95 LKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444577899999999999998874
No 65
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=28.21 E-value=80 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 033604 19 LVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
|+...++++.++..|+.+|..+
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l 25 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAAL 25 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 66
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.04 E-value=1e+02 Score=20.49 Aligned_cols=20 Identities=20% Similarity=0.517 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033604 18 ALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qI 37 (115)
-+-+||-.|.+++.+||.+|
T Consensus 42 RmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 42 RMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHhHHHHHHHHHHhh
Confidence 44556667888999999887
No 67
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=27.92 E-value=1.2e+02 Score=20.72 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 8 ~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
..+.+..++..|-..|..|+.+|.+.+...-.+|
T Consensus 33 ~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 33 KRDELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 3467788888899999999999999988765554
No 68
>PHA02107 hypothetical protein
Probab=27.90 E-value=78 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+-.++++|.++|+++|+.++.|-..|
T Consensus 189 ID~EI~~LQA~RKEiEDN~K~IKN~I 214 (216)
T PHA02107 189 IDEEIKELQARRKEIEDNIKSIKNAI 214 (216)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999998876554
No 69
>PF09932 DUF2164: Uncharacterized conserved protein (DUF2164); InterPro: IPR018680 This family of various hypothetical prokaryotic proteins has no known function.
Probab=27.80 E-value=1.2e+02 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
.+..-++-+.++++.|+..||.+|
T Consensus 51 gv~DA~~~~~~r~~~l~~~ly~lE 74 (76)
T PF09932_consen 51 GVQDAQAVLEERMEDLEEELYELE 74 (76)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhh
Confidence 445567778899999999999887
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.29 E-value=62 Score=23.80 Aligned_cols=30 Identities=10% Similarity=0.250 Sum_probs=15.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 5 QQRGNSNPAATLAALVSKRSRFQDELRNIE 34 (115)
Q Consensus 5 ~q~~~~~~~~~L~~Ll~kr~~Le~~L~~LE 34 (115)
.++++..+...+.+|-+.-.+|+..|..|.
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554445555544444
No 71
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.98 E-value=1.2e+02 Score=25.41 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccccccccceeecCcccccCC
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETS----YLQDIGQFGNAFKGFEGFLSSG 65 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~----YLeeT~~~GNIikGfDgylk~~ 65 (115)
...|++|.++|..|+.++++||+.=-..|.+ +-..+...--=||||--|+-++
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGs 59 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGS 59 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHH
Confidence 3568999999999999999999876655543 3333333333489999998753
No 72
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=26.96 E-value=67 Score=24.08 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 033604 23 RSRFQDELRNIENQVYELET 42 (115)
Q Consensus 23 r~~Le~~L~~LE~qIy~~Et 42 (115)
-.+||+++..||+.+-|+|-
T Consensus 100 lEkLE~EvreLEQlV~DLE~ 119 (135)
T PF15466_consen 100 LEKLEKEVRELEQLVRDLEE 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999884
No 73
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=26.87 E-value=1.6e+02 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 033604 23 RSRFQDELRNIENQVYELET 42 (115)
Q Consensus 23 r~~Le~~L~~LE~qIy~~Et 42 (115)
|.-|..++..||.+|-.++-
T Consensus 28 k~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 28 KDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888887765
No 74
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.80 E-value=1.1e+02 Score=22.38 Aligned_cols=29 Identities=10% Similarity=0.316 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhhcccc
Q 033604 16 LAALVSKRSRFQDELR-------NIENQVYELETSY 44 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~-------~LE~qIy~~Et~Y 44 (115)
...++..++.|+.+|+ .|+.+|-..|..|
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665 4555544444333
No 75
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=26.70 E-value=60 Score=23.01 Aligned_cols=34 Identities=15% Similarity=0.457 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~ 49 (115)
...+++..|-+.+..|+.+++.|++. ..|+++-+
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg-----~~~i~e~A 94 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG-----RDYIEERA 94 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHH
Confidence 34555555555555555555555554 45776543
No 76
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=27 Score=25.36 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.7
Q ss_pred cccceeecCccccc
Q 033604 50 QFGNAFKGFEGFLS 63 (115)
Q Consensus 50 ~~GNIikGfDgylk 63 (115)
.-|-||||||--+-
T Consensus 52 GkgeVIkGwdegv~ 65 (108)
T KOG0544|consen 52 GKGEVIKGWDEGVA 65 (108)
T ss_pred cCcceeechhhcch
Confidence 36899999986554
No 77
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.53 E-value=1.2e+02 Score=24.81 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
++.++++.+.++..+|..+...+|..|-+..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888887777
No 78
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=26.19 E-value=83 Score=20.07 Aligned_cols=48 Identities=19% Similarity=0.399 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccccccccceeecCccccc
Q 033604 12 PAATLAALVSKRSRFQDE----LRNIENQVYELETSYLQDIGQFGNAFKGFEGFLS 63 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~----L~~LE~qIy~~Et~YLeeT~~~GNIikGfDgylk 63 (115)
.-+++...+++|.++|++ |.+|-++.- ..-.....+|.+-+.|+.++.
T Consensus 24 ~~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~----~~~~~~~~~~s~~~aw~~~~~ 75 (87)
T smart00055 24 LLEDLKKFIRERAKIEEEYAKKLQKLSKKLR----AVRDTESEYGSLSKSWEVLLS 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCCCcchhHHHHHHHHHH
Confidence 356788899999999987 444444411 111222346666677776654
No 79
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=26.10 E-value=1.5e+02 Score=23.36 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
=|.+..+|..-|..+..+|..||.|+-|.
T Consensus 143 ER~EaeQLQsLR~avRqElqELE~QL~DR 171 (179)
T PF14723_consen 143 EREEAEQLQSLRSAVRQELQELEFQLEDR 171 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999998664
No 80
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.17 E-value=80 Score=28.20 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 033604 21 SKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 21 ~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
++++.++++|+.||.+|-.++..
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555
No 81
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.13 E-value=1.8e+02 Score=18.03 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
..+..|...-..|..++..|+.++..+
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555444
No 82
>PRK14625 hypothetical protein; Provisional
Probab=24.95 E-value=1.3e+02 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
+.+++++=+++++++.++++++.+.|-
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v 30 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTV 30 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 677888888999999999999987764
No 83
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=24.94 E-value=1.2e+02 Score=22.04 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 033604 24 SRFQDELRNIENQVYELET 42 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy~~Et 42 (115)
..|..++..||+||-++|.
T Consensus 86 ~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 86 DELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3677778888888877764
No 84
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.62 E-value=2e+02 Score=18.40 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
....++..+.++..+++.+...|+.+|..+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777778888888888887764
No 85
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=24.56 E-value=65 Score=28.40 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=33.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 6 QRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 6 q~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
+.++.++...+.++-.-|..|+++|+.|..+|.+++..|..
T Consensus 69 ~dtt~~L~~R~~di~~Wk~el~~ele~l~~E~~~L~~~k~r 109 (421)
T KOG2685|consen 69 RDTTEKLGQRLDDVNFWKGELDRELEDLAAEIDDLLHEKRR 109 (421)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999888753
No 86
>PRK13694 hypothetical protein; Provisional
Probab=24.53 E-value=2.1e+02 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
.-+..+|+..|.+=..|+++-+.|-.+|-+
T Consensus 8 ~va~~~Lr~fIERIERLEeEkk~i~~dikd 37 (83)
T PRK13694 8 VVAKEQLRAFIERIERLEEEKKTISDDIKD 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999988865
No 87
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.28 E-value=1.2e+02 Score=22.28 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT 48 (115)
.++.++.+.-.+++++|.+++..+++.+..+....
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~ 115 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLK 115 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888899999999988888777543
No 88
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]
Probab=23.89 E-value=1.1e+02 Score=28.05 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccc--cccceeecCcccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETSYLQDIG--QFGNAFKGFEGFL 62 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~--~~GNIikGfDgyl 62 (115)
.|-..-+++..+|.++|++||++.+.=++-.+ +-|-|+=.=.++-
T Consensus 215 ~L~~l~~el~~~l~~le~eiy~laG~~FNi~SPKQL~~ILfeKl~Lp 261 (593)
T COG0749 215 YLKELSKELGCELAELEEEIYELAGEEFNINSPKQLGEILFEKLGLP 261 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCC
Confidence 34455678999999999999999997666332 5777764434444
No 89
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=23.88 E-value=1.5e+02 Score=24.19 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
....++.|.++-+++.++.+.|..||+.--.+|.
T Consensus 24 ~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~ 57 (236)
T PF12269_consen 24 EEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEA 57 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446888999988888888888888886555544
No 90
>cd08638 DNA_pol_A_theta DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis and in somatic hypermutation. DNA polymerase theta is a low-fidelity family A enzyme implicated in translesion synthesis (TLS) and in somatic hypermutation (SHM). DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Pol theta is an exception among family A polymerases and generates processive single base substitutions. Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondri
Probab=23.84 E-value=1.2e+02 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 033604 17 AALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
..|-+.+++|+.+|+.||++||.
T Consensus 7 ~~l~~~~~~l~~~~~~le~~~~~ 29 (373)
T cd08638 7 EELERQRALLQAKLKELEEEAYR 29 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556678899999999999995
No 91
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.80 E-value=1.7e+02 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
++.+|-+.=++.+.+++.|-+|+-.++.+|
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333334445555555555555444
No 92
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=23.77 E-value=1.1e+02 Score=22.17 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHH--HHHHHhhcc
Q 033604 22 KRSRFQDELRNI--ENQVYELET 42 (115)
Q Consensus 22 kr~~Le~~L~~L--E~qIy~~Et 42 (115)
.|++|.+.+..| |..+..+|.
T Consensus 57 e~r~L~kKi~~l~veRkmr~Les 79 (109)
T PF11690_consen 57 ERRKLRKKIQDLRVERKMRALES 79 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 344455555555 666666553
No 93
>PRK14624 hypothetical protein; Provisional
Probab=23.61 E-value=1.7e+02 Score=21.15 Aligned_cols=31 Identities=3% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
-+-|.+++++=+++++++.+++++|.+.|-+
T Consensus 5 ~~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~ 35 (115)
T PRK14624 5 IKNMSEALSNMGNIREKMEEVKKRIASIRVV 35 (115)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 3458899999999999999999999887643
No 94
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.48 E-value=1.1e+02 Score=28.79 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYL 45 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YL 45 (115)
.+-+|.+|..||++|..+++++-..|.++-..-+
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~ 124 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIP 124 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4668999999999999998888877766544443
No 95
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.45 E-value=1e+02 Score=23.79 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 033604 21 SKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 21 ~kr~~Le~~L~~LE~qIy~~ 40 (115)
+.|++|..+|.++|.+|-.+
T Consensus 29 eE~eeLr~EL~KvEeEI~TL 48 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTL 48 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777776544
No 96
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=23.41 E-value=1.8e+02 Score=21.08 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
..++++.|++ ++.+|..+|..|-+.|+-+
T Consensus 79 ~~~~~~~l~~-------~~~~~~~~e~Rl~~mE~yV 107 (121)
T TIGR02978 79 GQSPRQALRE-------VKREFRDLERRLRNMERYV 107 (121)
T ss_pred CCCHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 3456666665 5666666666666666544
No 97
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.40 E-value=2.2e+02 Score=19.29 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
..+|+..+.+=..|+++.+.|-.+|-+
T Consensus 3 ~~~Lr~~ieRiErLEeEk~~i~~dikd 29 (74)
T PF10073_consen 3 AEQLRQFIERIERLEEEKKAISDDIKD 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999988865
No 98
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.22 E-value=44 Score=29.80 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 14 ATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+++.++.++=++|+.++..|+.|+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666665
No 99
>PF02890 DUF226: Borrelia family of unknown function DUF226; InterPro: IPR004180 This family of proteins are found in Borrelia burgdorferi and Borrelia garinii. The proteins are about 190 amino acids long and have no known function.
Probab=22.92 E-value=1e+02 Score=23.34 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhcccccccccccccee
Q 033604 25 RFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (115)
Q Consensus 25 ~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIi 55 (115)
.|-+.|..||++||.+ |=..-+..|-|+
T Consensus 107 ~l~~~~~~LEk~Vy~F---Y~Kkl~~gGiI~ 134 (141)
T PF02890_consen 107 SLLERILKLEKEVYEF---YNKKLPEGGIIT 134 (141)
T ss_pred HHHHHHHHHHHHHHHH---hcccCCCCCchh
Confidence 6778899999999987 444445456443
No 100
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=22.83 E-value=1.8e+02 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.635 Sum_probs=13.0
Q ss_pred cccccccccceeecCc-ccc
Q 033604 44 YLQDIGQFGNAFKGFE-GFL 62 (115)
Q Consensus 44 YLeeT~~~GNIikGfD-gyl 62 (115)
++++-...|-+|||+| |-+
T Consensus 62 ~i~~i~~~Gv~vKd~~~gLv 81 (120)
T PF09969_consen 62 LIDEIEELGVEVKDLDPGLV 81 (120)
T ss_pred HHHHHHHcCcEEeCCcceeE
Confidence 3444446899999998 443
No 101
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=22.78 E-value=88 Score=23.73 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.5
Q ss_pred cCCCCCHHHHHHHHHH
Q 033604 6 QRGNSNPAATLAALVS 21 (115)
Q Consensus 6 q~~~~~~~~~L~~Ll~ 21 (115)
=++++.++++|.++|.
T Consensus 70 ~rD~aai~aKLDElir 85 (141)
T COG5478 70 NRDTAAIQAKLDELIR 85 (141)
T ss_pred cccHHHHHHHHHHHHH
Confidence 4677888999999998
No 102
>PLN02320 seryl-tRNA synthetase
Probab=22.75 E-value=76 Score=28.36 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLee 47 (115)
..+|+++=++|.++|..||.++...|....+.
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555667777777777777776655543
No 103
>PRK14622 hypothetical protein; Provisional
Probab=22.53 E-value=1.5e+02 Score=20.83 Aligned_cols=27 Identities=7% Similarity=0.334 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
+.+|+++=+++++++.++++++-+.|-
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v 29 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAV 29 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 567888889999999999999887653
No 104
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.48 E-value=2.5e+02 Score=18.85 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 8 GNSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 8 ~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
....+.++.+++-.+=..++.++..+|.++..
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777778888888888888865
No 105
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.32 E-value=1.4e+02 Score=20.95 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIG 49 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~ 49 (115)
+|..-..+|..++.....|+.+|-++-++-|++.+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN 36 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEAN 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777777777777777777777666543
No 106
>PF14282 FlxA: FlxA-like protein
Probab=21.97 E-value=1.7e+02 Score=20.41 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 033604 21 SKRSRFQDELRNIENQVYELETSYL 45 (115)
Q Consensus 21 ~kr~~Le~~L~~LE~qIy~~Et~YL 45 (115)
.+++.|..+|..||.||..+...=-
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777776654433
No 107
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.97 E-value=72 Score=28.03 Aligned_cols=32 Identities=16% Similarity=0.427 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
.+.+..--+++.+|+++|+.+|.+|-..|..-
T Consensus 51 ~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 51 EKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666666665555443
No 108
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.89 E-value=1.2e+02 Score=23.68 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHhhcc--ccccccccccceeecC
Q 033604 13 AATLAALVSKRS------RFQDELRNIENQVYELET--SYLQDIGQFGNAFKGF 58 (115)
Q Consensus 13 ~~~L~~Ll~kr~------~Le~~L~~LE~qIy~~Et--~YLeeT~~~GNIikGf 58 (115)
.+.|.+|+++-+ +++.+|..++.+|-..|+ .||++-..+..|--=|
T Consensus 148 ~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l 201 (262)
T PF14257_consen 148 EERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISL 201 (262)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEE
Confidence 344555555433 566777777777777766 3676655565554433
No 109
>COG5317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.89 E-value=1.5e+02 Score=22.98 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 7 RGNSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 7 ~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
|+-.++...+.+|+++--.|......|..+||.
T Consensus 114 pgwneLP~~f~dLveRSlRLq~rVr~lDreiY~ 146 (175)
T COG5317 114 PGWNELPESFRDLVERSLRLQARVRRLDREIYG 146 (175)
T ss_pred cchhhchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444567889999999999999999999999996
No 110
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=21.85 E-value=1.9e+02 Score=22.72 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
.++-+++.+|.+|.+++..|..+|-+
T Consensus 242 ~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 242 EEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556688888899999999888753
No 111
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=21.74 E-value=88 Score=27.15 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQF 51 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~ 51 (115)
++.+...|.-..++|+.+|..||..--.+-..+|+.|-.+
T Consensus 226 lkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf 265 (410)
T KOG4715|consen 226 LKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSF 265 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4567778888899999999999998888888888876533
No 112
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.73 E-value=1.4e+02 Score=18.32 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033604 23 RSRFQDELRNIENQVY 38 (115)
Q Consensus 23 r~~Le~~L~~LE~qIy 38 (115)
.++++++++++|++|-
T Consensus 50 ~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 50 IRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667777777664
No 113
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.57 E-value=2e+02 Score=19.64 Aligned_cols=8 Identities=75% Similarity=0.829 Sum_probs=3.6
Q ss_pred HHHHHhhc
Q 033604 34 ENQVYELE 41 (115)
Q Consensus 34 E~qIy~~E 41 (115)
|.+|-.+|
T Consensus 72 e~~V~~LE 79 (99)
T PF10046_consen 72 EEQVTELE 79 (99)
T ss_pred HHHHHHHH
Confidence 33544444
No 114
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.57 E-value=2.3e+02 Score=19.48 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..|-.+...++..+..||+++-.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~ 95 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544443
No 115
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=21.49 E-value=2e+02 Score=19.02 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
++|.++..++-+++..+..|+.++..
T Consensus 37 ~~le~l~~q~~k~~~~~~~L~~~~~r 62 (80)
T PF11488_consen 37 KELEELYQQDCKTEMEVKMLETQDPR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 44444444444444444444444443
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=21.23 E-value=1.5e+02 Score=25.24 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
..+++++..+..++..++.++..++.+|.+..
T Consensus 216 ~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 216 ARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577788888888888888888888886664
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=21.21 E-value=2.2e+02 Score=17.63 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+..++..|...-..|..++..|+.+|..+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544
No 118
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand.
Probab=21.10 E-value=2.1e+02 Score=24.25 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccccccccccccceeecCcccc
Q 033604 10 SNPAATLAALVSKRSRFQDELRN----IENQVYELETSYLQDIGQFGNAFKGFEGFL 62 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~----LE~qIy~~Et~YLeeT~~~GNIikGfDgyl 62 (115)
+=+...|++|+..|+++.+.+++ .+..+|+....=|.-+. |.+=||=||.
T Consensus 74 Gilp~iL~~Ll~~R~~~K~~mk~~~d~~~~~~ld~~Q~AlKi~~---NS~YG~~G~~ 127 (393)
T cd05533 74 GLLPEILEELLAARKRAKKDLKEETDPFKKAVLDGRQLALKISA---NSVYGFTGAT 127 (393)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhheee---eecccccccc
Confidence 44678999999999999888875 55666666554444333 4544555544
No 119
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.09 E-value=2.4e+02 Score=19.06 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
.-+-++...|++++..|+++|-..+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~ 114 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQ 114 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555544443
No 120
>PRK14626 hypothetical protein; Provisional
Probab=20.94 E-value=1.7e+02 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
-+.+++++=++++.++.++++++...|-+
T Consensus 6 n~~~mmkqaq~mQ~km~~~qeeL~~~~v~ 34 (110)
T PRK14626 6 NLAELMKQMQSIKENVEKAKEELKKEEIV 34 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 37788888889999999999999877643
No 121
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.84 E-value=1.2e+02 Score=18.97 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 033604 14 ATLAALVSKRSRFQD 28 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~ 28 (115)
.++.+|.+||+.|-+
T Consensus 26 ~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 26 EQIAELEAKRQRLVD 40 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555554433
No 122
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.73 E-value=2.3e+02 Score=25.32 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
...+.+.++++-++.++++++++.++++|-+.
T Consensus 210 ~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~ 241 (646)
T PRK05771 210 EGTPSELIREIKEELEEIEKERESLLEELKEL 241 (646)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777776653
No 123
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.67 E-value=2.9e+02 Score=18.95 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
....-|.++++.|+++++.|+..+-..+
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (116)
T cd04769 79 HLQQALEDKKQEIRAQITELQQLLARLD 106 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666667777777666654443
No 124
>COG3418 Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=2.1e+02 Score=21.87 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
..+|.+++++|.-|-.+|.-+++.+...|.+|
T Consensus 37 ~~~lq~i~~qK~sLl~~L~~l~Q~R~~~~~~a 68 (146)
T COG3418 37 GSVLQEITEQKSSLLATLDYLDQDRAKEPNEA 68 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhc
Confidence 46899999999999999999999999888765
No 125
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.49 E-value=2.2e+02 Score=19.75 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+..+.++.++-..++.+|..||.+|-.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5667777777777888888888877554
No 126
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.47 E-value=2.1e+02 Score=22.15 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLee 47 (115)
..+......|-.+-+.+++++..+|+++-.+|..|...
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~q 226 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQ 226 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566667777777777777777776653
No 127
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.36 E-value=2e+02 Score=24.94 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
+.++.++-++.++++++|..|++++-...+
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455555555555666666665554443
No 128
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.15 E-value=2.1e+02 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
++...+++|...|..||.+|-++|.+
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777777766643
No 129
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=20.13 E-value=1.6e+02 Score=25.71 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=43.5
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--------ccccccceeecCccc
Q 033604 2 SLRQQRGNSNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ--------DIGQFGNAFKGFEGF 61 (115)
Q Consensus 2 ~~~~q~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe--------eT~~~GNIikGfDgy 61 (115)
++.+++-+++-.+.|++|-+.=..|.++|..++.+|-..--.+.+ ....-.+|+.||...
T Consensus 116 ~~~g~~lt~~e~~tL~~L~~~a~~l~~~L~~~q~~v~~g~l~w~~~~~~~~~~~~~~~~~~~~~f~~v 183 (435)
T TIGR02889 116 DAEGKSLSDKEYKTLTTLYNQAVKLENQLRKVQNIVMQGGVRWGEIRKLYSGDEAQMPEAILNDFKDV 183 (435)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhHhhhhccccccCCcchhhHHHHH
Confidence 456888899999999999999999999999999999543332222 111245667777644
No 130
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=20.12 E-value=2.5e+02 Score=19.23 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+..-+|+.+..+|+.++..|++++-.++
T Consensus 71 alvl~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 71 AVALTLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445899999999999999999886554
Done!