Query 033604
Match_columns 115
No_of_seqs 107 out of 170
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ra3_B P2F; coiled coil domain 74.9 3.8 0.00013 22.0 3.2 25 17-41 3-27 (28)
2 4abm_A Charged multivesicular 70.6 7.3 0.00025 25.4 4.5 27 17-43 48-74 (79)
3 3he4_A Synzip6; heterodimeric 70.0 10 0.00035 23.2 4.7 24 19-42 29-52 (56)
4 2akf_A Coronin-1A; coiled coil 69.0 11 0.00037 21.0 4.3 29 11-39 3-31 (32)
5 1kd8_A GABH AIV, GCN4 acid bas 68.1 14 0.00048 21.2 4.8 30 12-41 6-35 (36)
6 2l5g_B Putative uncharacterize 63.2 11 0.00038 22.3 3.8 23 18-40 6-28 (42)
7 2fxo_A Myosin heavy chain, car 60.8 13 0.00044 25.7 4.5 30 14-43 97-126 (129)
8 2pnv_A Small conductance calci 60.1 17 0.00058 21.4 4.3 29 14-42 9-37 (43)
9 2zvf_A Alanyl-tRNA synthetase; 59.8 17 0.00057 25.4 5.0 38 10-47 28-66 (171)
10 1a93_B MAX protein, coiled coi 58.6 23 0.00077 20.0 5.0 31 11-41 4-34 (34)
11 3c3g_A Alpha/beta peptide with 58.3 17 0.00057 20.5 3.8 24 12-35 5-28 (33)
12 3ljm_A Coil Ser L9C; de novo d 58.0 19 0.00065 19.7 3.9 26 17-42 4-29 (31)
13 1gp8_A Protein (scaffolding pr 56.8 6.2 0.00021 23.1 1.9 13 27-39 7-19 (40)
14 2oqq_A Transcription factor HY 55.9 17 0.00057 21.5 3.7 28 14-41 3-30 (42)
15 1l8d_A DNA double-strand break 53.3 38 0.0013 22.1 5.7 44 12-56 15-58 (112)
16 3nmd_A CGMP dependent protein 53.3 23 0.00078 23.0 4.4 29 14-42 22-54 (72)
17 2r2v_A GCN4 leucine zipper; co 53.1 27 0.00092 19.7 4.1 24 12-35 6-29 (34)
18 2bni_A General control protein 52.5 23 0.00079 20.0 3.8 24 12-35 6-29 (34)
19 1nkp_B MAX protein, MYC proto- 49.4 30 0.001 21.8 4.6 26 15-40 55-80 (83)
20 2yy0_A C-MYC-binding protein; 48.0 31 0.001 20.8 4.2 29 10-38 22-50 (53)
21 1zme_C Proline utilization tra 47.4 26 0.00088 20.7 3.8 25 13-37 43-67 (70)
22 2wuj_A Septum site-determining 47.0 16 0.00056 22.1 2.8 24 14-37 34-57 (57)
23 3c3f_A Alpha/beta peptide with 46.0 34 0.0012 19.3 3.8 24 12-35 6-29 (34)
24 4etp_A Kinesin-like protein KA 45.3 21 0.00072 29.1 4.0 39 10-48 6-44 (403)
25 1wt6_A Myotonin-protein kinase 44.7 44 0.0015 22.2 4.8 29 12-40 43-71 (81)
26 3etw_A Adhesin A; antiparallel 43.7 37 0.0013 23.9 4.6 27 16-42 77-103 (119)
27 1gmj_A ATPase inhibitor; coile 43.6 41 0.0014 22.4 4.6 29 14-42 37-65 (84)
28 1rtm_1 Mannose-binding protein 43.2 37 0.0013 22.5 4.5 26 12-37 2-27 (149)
29 1fxk_A Prefoldin; archaeal pro 42.2 45 0.0015 21.3 4.7 28 15-42 66-93 (107)
30 3s4r_A Vimentin; alpha-helix, 41.7 38 0.0013 22.3 4.2 30 11-40 60-89 (93)
31 1t3j_A Mitofusin 1; coiled coi 40.9 20 0.0007 24.4 2.8 35 9-43 34-69 (96)
32 3hnw_A Uncharacterized protein 40.8 42 0.0014 23.7 4.6 29 15-43 104-132 (138)
33 3u06_A Protein claret segregat 40.0 28 0.00097 28.6 4.0 36 11-46 7-42 (412)
34 1a92_A Delta antigen; leucine 39.9 17 0.00057 22.2 2.0 31 21-55 14-44 (50)
35 2zqm_A Prefoldin beta subunit 39.9 55 0.0019 21.2 4.8 28 15-42 71-98 (117)
36 2wq1_A General control protein 39.8 50 0.0017 18.5 4.1 24 12-35 5-28 (33)
37 3viq_A SWI5-dependent recombin 38.8 29 0.001 24.2 3.5 26 18-43 4-29 (122)
38 1l8d_A DNA double-strand break 38.7 51 0.0018 21.4 4.5 32 13-44 70-101 (112)
39 1ses_A Seryl-tRNA synthetase; 38.2 31 0.001 28.3 4.0 42 14-55 64-105 (421)
40 3qao_A LMO0526 protein, MERR-l 37.7 50 0.0017 25.0 4.9 32 12-43 81-112 (249)
41 2zqm_A Prefoldin beta subunit 37.3 59 0.002 21.0 4.7 28 13-40 83-110 (117)
42 1uo4_A General control protein 37.3 56 0.0019 18.4 3.8 24 12-35 6-29 (34)
43 3q8t_A Beclin-1; autophagy, AT 36.9 63 0.0021 21.4 4.7 37 12-48 23-62 (96)
44 2oxj_A Hybrid alpha/beta pepti 36.2 59 0.002 18.3 3.8 24 12-35 6-29 (34)
45 2gkw_A TNF receptor-associated 36.1 59 0.002 23.2 4.9 33 12-44 5-37 (192)
46 1ci6_A Transcription factor AT 35.4 70 0.0024 19.5 4.5 25 13-37 29-53 (63)
47 2aze_B Transcription factor E2 35.1 70 0.0024 21.6 4.8 31 11-41 10-40 (106)
48 1r8d_A Transcription activator 35.0 62 0.0021 20.9 4.5 21 19-39 80-100 (109)
49 2q6q_A Spindle POLE BODY compo 34.8 79 0.0027 20.5 4.7 35 12-46 29-63 (74)
50 2yfv_C SCM3, KLLA0F05115P; cel 34.2 83 0.0028 19.9 4.7 30 17-47 21-50 (63)
51 2avr_X Adhesion A; antiparalle 33.3 13 0.00043 26.4 0.8 12 51-62 73-84 (119)
52 3gpv_A Transcriptional regulat 32.9 70 0.0024 22.1 4.7 20 18-37 99-118 (148)
53 3hnw_A Uncharacterized protein 32.7 58 0.002 22.9 4.2 28 13-40 67-94 (138)
54 1fxk_A Prefoldin; archaeal pro 32.4 84 0.0029 20.0 4.8 27 13-39 78-104 (107)
55 3cve_A Homer protein homolog 1 32.1 92 0.0032 20.0 4.8 29 11-39 4-32 (72)
56 3u06_A Protein claret segregat 31.8 57 0.0019 26.7 4.6 33 11-43 14-46 (412)
57 3kin_B Kinesin heavy chain; mo 31.4 85 0.0029 21.3 4.8 27 12-38 87-113 (117)
58 1wle_A Seryl-tRNA synthetase; 31.4 42 0.0014 28.4 3.8 32 15-46 117-148 (501)
59 1q08_A Zn(II)-responsive regul 31.2 93 0.0032 19.4 4.7 28 14-41 39-66 (99)
60 1pwb_A SP-D, PSP-D, pulmonary 31.1 51 0.0017 22.6 3.7 29 7-35 24-52 (177)
61 2ke4_A CDC42-interacting prote 31.0 39 0.0013 22.7 2.9 22 12-33 13-34 (98)
62 1j1d_B Troponin T, TNT; THIN f 30.9 64 0.0022 22.1 4.1 27 18-44 46-72 (106)
63 2lw1_A ABC transporter ATP-bin 30.9 76 0.0026 20.3 4.3 27 13-39 21-47 (89)
64 1kd8_B GABH BLL, GCN4 acid bas 30.8 77 0.0026 18.0 4.5 26 12-37 6-31 (36)
65 2dq0_A Seryl-tRNA synthetase; 30.8 36 0.0012 28.2 3.3 27 18-44 73-99 (455)
66 3hh0_A Transcriptional regulat 29.7 94 0.0032 21.5 4.9 27 15-41 88-114 (146)
67 2er8_A Regulatory protein Leu3 29.5 45 0.0015 19.8 2.8 18 24-41 52-69 (72)
68 3gp4_A Transcriptional regulat 29.3 88 0.003 21.5 4.7 24 18-41 92-115 (142)
69 2vz4_A Tipal, HTH-type transcr 29.3 88 0.003 20.2 4.5 24 13-36 80-103 (108)
70 1yhn_B RILP, RAB interacting l 28.8 54 0.0018 20.9 3.1 35 14-48 3-37 (65)
71 2eqb_B RAB guanine nucleotide 28.6 75 0.0026 21.6 4.0 37 12-48 31-67 (97)
72 1ytz_T Troponin T; muscle, THI 28.4 64 0.0022 22.1 3.7 26 19-44 47-72 (107)
73 1buu_A Protein (mannose-bindin 28.1 80 0.0027 21.5 4.3 27 10-36 19-45 (168)
74 1txp_A HnRNP C, heterogeneous 27.9 77 0.0026 17.1 3.6 22 14-35 3-24 (28)
75 3ctw_B RCDA; protein binding; 27.9 58 0.002 24.2 3.6 31 9-39 115-145 (169)
76 1aq5_A Matrilin-1, CMP, cartil 27.8 1E+02 0.0035 18.4 4.5 25 13-37 22-46 (47)
77 3qne_A Seryl-tRNA synthetase, 27.6 44 0.0015 28.3 3.3 27 18-44 75-101 (485)
78 1ic2_A Tropomyosin alpha chain 27.3 1.1E+02 0.0038 19.2 4.5 29 14-42 27-55 (81)
79 2pms_C Pneumococcal surface pr 26.9 79 0.0027 22.4 4.0 27 16-42 63-89 (125)
80 3bas_A Myosin heavy chain, str 26.8 62 0.0021 20.9 3.3 22 15-36 64-85 (89)
81 1z0k_B FYVE-finger-containing 26.8 44 0.0015 21.5 2.5 20 24-43 49-68 (69)
82 2fxo_A Myosin heavy chain, car 26.6 85 0.0029 21.4 4.2 30 13-42 68-97 (129)
83 3m48_A General control protein 26.5 91 0.0031 17.4 3.8 24 12-35 5-28 (33)
84 2lxm_B Charged multivesicular 26.4 30 0.001 21.5 1.6 25 24-48 23-48 (57)
85 4dac_A Computationally designe 26.1 55 0.0019 17.4 2.4 19 25-43 5-23 (28)
86 4g1a_A AQ-C16C19 peptide; heli 26.0 32 0.0011 18.8 1.5 24 19-42 5-28 (32)
87 3mq9_A Bone marrow stromal ant 26.0 85 0.0029 24.9 4.6 31 13-43 435-465 (471)
88 2zxx_A Geminin; coiled-coil, c 25.9 1.2E+02 0.0042 19.8 4.6 29 13-41 26-54 (79)
89 3rrk_A V-type ATPase 116 kDa s 25.9 95 0.0032 23.9 4.7 30 12-41 104-136 (357)
90 3lss_A Seryl-tRNA synthetase; 25.9 41 0.0014 28.5 2.8 27 20-46 109-136 (484)
91 2z5i_A TM, general control pro 25.7 64 0.0022 19.2 3.0 17 24-40 15-31 (52)
92 3cvf_A Homer-3, homer protein 25.7 98 0.0034 20.2 4.1 31 9-39 8-38 (79)
93 3viq_B Mating-type switching p 24.9 76 0.0026 21.1 3.5 22 21-42 8-29 (85)
94 1gk7_A Vimentin; intermediate 24.7 1E+02 0.0035 17.4 4.5 26 13-38 12-37 (39)
95 2w6a_A ARF GTPase-activating p 24.6 1.3E+02 0.0044 19.0 4.3 29 13-41 26-54 (63)
96 3u1c_A Tropomyosin alpha-1 cha 24.6 1.2E+02 0.0042 19.9 4.5 30 13-42 29-58 (101)
97 1go4_E MAD1 (mitotic arrest de 24.6 1.2E+02 0.004 20.6 4.5 28 12-39 17-44 (100)
98 2avr_X Adhesion A; antiparalle 23.7 1.3E+02 0.0043 21.2 4.6 26 18-43 79-104 (119)
99 1yzm_A FYVE-finger-containing 23.3 57 0.0019 19.8 2.4 20 24-43 31-50 (51)
100 2hy6_A General control protein 23.3 1.1E+02 0.0037 17.2 4.5 24 12-35 6-29 (34)
101 3swk_A Vimentin; cytoskeleton, 23.1 1.1E+02 0.0037 19.8 4.0 37 11-47 4-40 (86)
102 3kdq_A Uncharacterized conserv 23.1 1E+02 0.0034 22.2 4.1 26 15-40 5-30 (154)
103 1fmh_A General control protein 22.6 68 0.0023 17.6 2.4 17 25-41 5-21 (33)
104 1uii_A Geminin; human, DNA rep 22.5 1.6E+02 0.0054 19.5 4.7 29 13-41 38-66 (83)
105 1fxk_C Protein (prefoldin); ar 22.4 69 0.0024 21.5 3.0 30 13-42 14-43 (133)
106 2yo3_A General control protein 22.2 1.2E+02 0.0042 24.0 4.7 33 11-43 220-252 (268)
107 2wg5_A General control protein 22.0 86 0.0029 21.0 3.4 42 15-60 8-49 (109)
108 1d7m_A Cortexillin I; coiled-c 21.9 1.1E+02 0.0039 20.8 3.9 23 17-39 21-43 (101)
109 3uux_B Mitochondrial division 21.8 1.3E+02 0.0044 23.6 4.7 33 12-44 182-214 (242)
110 1r8e_A Multidrug-efflux transp 20.6 1.5E+02 0.0051 21.5 4.7 21 16-36 88-108 (278)
111 3v67_A Sensor protein CPXA; PA 20.5 72 0.0025 22.4 2.8 44 12-57 13-70 (138)
112 3qks_A DNA double-strand break 20.1 1.8E+02 0.006 20.5 4.9 33 10-42 164-196 (203)
113 3u59_A Tropomyosin beta chain; 20.1 1.7E+02 0.0059 19.0 4.5 30 13-42 29-58 (101)
No 1
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=74.94 E-value=3.8 Score=22.05 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+.|-+|-..|..+++.||-+|..+|
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 4456677778899999999998887
No 2
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=70.57 E-value=7.3 Score=25.37 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
...|++|+-.|..|.+++.+|..+|..
T Consensus 48 l~aLkrKK~~E~qL~q~~~ql~~LE~q 74 (79)
T 4abm_A 48 LQALKRKKRYEKQLAQIDGTLSTIEFQ 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345778888899999888888888863
No 3
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=70.04 E-value=10 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 19 LVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
|-..-..|+++++.||+.|.++|.
T Consensus 29 lendnanlekdianlekdianler 52 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHHHH
Confidence 334455688888888888888775
No 4
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=68.95 E-value=11 Score=20.95 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
.+..+++.|..--++|++.++.||+.+-.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888888889999999999987753
No 5
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.11 E-value=14 Score=21.18 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+..+..+|+.++..|+.+.+.|+.-+-..|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 456778999999999999999988776655
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.19 E-value=11 Score=22.30 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 033604 18 ALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+||++=.+++.++++.|++|..+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888889999999999999765
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.85 E-value=13 Score=25.73 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
.....|...|++|+.++..|+++|-+.|..
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777888888888888888877754
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=60.15 E-value=17 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..+.++-.+...||+++..||.++-+...
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999876543
No 9
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=59.76 E-value=17 Score=25.40 Aligned_cols=38 Identities=8% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETS-YLQD 47 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~-YLee 47 (115)
.++...+..|+...+++++++.+|..++...+.. +++.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~ 66 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMER 66 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4889999999999999999999999999888743 3343
No 10
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.58 E-value=23 Score=20.03 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
..|++-.+..+.=..|.++-..||.||..+|
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 4566677777777788888888999998776
No 11
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=58.32 E-value=17 Score=20.50 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+|+.++..|+.+++.|-.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456788999999999999988754
No 12
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.03 E-value=19 Score=19.67 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..|-+|-..|+..|..||+++-.+|.
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555666788888888888877663
No 13
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=56.77 E-value=6.2 Score=23.14 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHh
Q 033604 27 QDELRNIENQVYE 39 (115)
Q Consensus 27 e~~L~~LE~qIy~ 39 (115)
.+.++.||+|||-
T Consensus 7 ~d~I~aiEQqiyv 19 (40)
T 1gp8_A 7 AANKDAIRKQMDA 19 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999984
No 14
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.90 E-value=17 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+.|.+|-.+.+.|+...+.||..|-.++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999887654
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=53.34 E-value=38 Score=22.10 Aligned_cols=44 Identities=7% Similarity=0.198 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceee
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFK 56 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIik 56 (115)
++.+|..|...+..+..++..+++.+..++.. -...|.+|..+.
T Consensus 15 ~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~ 58 (112)
T 1l8d_A 15 IEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELT 58 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCC
Confidence 45677777788888888888888888777663 223566777664
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.26 E-value=23 Score=23.01 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=18.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhhcc
Q 033604 14 ATLAALVSKRS----RFQDELRNIENQVYELET 42 (115)
Q Consensus 14 ~~L~~Ll~kr~----~Le~~L~~LE~qIy~~Et 42 (115)
.+|+.++++|. +.+..++.+|++|-.+|.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~ 54 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666654 356667777777766654
No 17
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=53.14 E-value=27 Score=19.74 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..++.+|+.++..|+.+++.|.+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456788889999999888888754
No 18
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=52.54 E-value=23 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..++.+|+.++..|+.+++.|-.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 456788999999999999988754
No 19
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=49.44 E-value=30 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+...|.....+|..+...|+.+|-.+
T Consensus 55 ~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 55 KNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555555443
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.96 E-value=31 Score=20.78 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVY 38 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy 38 (115)
..++.++.+|-+|-..|.++++.|..++-
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777777776654
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=47.40 E-value=26 Score=20.73 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+..+.+|..+-..|+..|..|+..|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777776654
No 22
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=47.02 E-value=16 Score=22.06 Aligned_cols=24 Identities=4% Similarity=0.398 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 14 ATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
..+..|++....|.+++..|+.+|
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555666666666555543
No 23
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=45.99 E-value=34 Score=19.31 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+|+.++..|+.+.+.|-.
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 456778899999999888887754
No 24
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.31 E-value=21 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT 48 (115)
..+..+++.|.+++++|++++++++.++-+.+..|.++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999888888887754
No 25
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.75 E-value=44 Score=22.19 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+.++|++.-++-+.|..++..+++++.++
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888899999999999999999873
No 26
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=43.74 E-value=37 Score=23.88 Aligned_cols=27 Identities=7% Similarity=0.203 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
+.++-.-+++|+++|+..|+-|..||-
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnFE~ 103 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555688899999999999998885
No 27
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.58 E-value=41 Score=22.40 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
++..+|.+-|++|+++|..-.++|-++|-
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~ 65 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQK 65 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777776666666653
No 28
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=43.16 E-value=37 Score=22.55 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+.++|..|..+.++|+.+|..|...+
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~ 27 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLH 27 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56778888888888888888887753
No 29
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.22 E-value=45 Score=21.34 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
.+..|-.++..++..+..||.++-..+.
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666655554443
No 30
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=41.69 E-value=38 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
++++++..+...|..|+-++..|...|.++
T Consensus 60 ~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888999999999998888765
No 31
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.90 E-value=20 Score=24.40 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccc
Q 033604 9 NSNPAATLAALVS-KRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 9 ~~~~~~~L~~Ll~-kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
=+...+.|...+. -++.|+++++.|+++|-.+|..
T Consensus 34 Ls~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i 69 (96)
T 1t3j_A 34 MATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKM 69 (96)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665443 4678999999999999888864
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.84 E-value=42 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
++.++-+...+|.+++..|+.+|-.+|+.
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566666666666666553
No 33
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.96 E-value=28 Score=28.56 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
.+..+|.++.+++++|++++++++.++-..+..+++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777666666666666666555555555443
No 34
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=39.91 E-value=17 Score=22.24 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccccccee
Q 033604 21 SKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (115)
Q Consensus 21 ~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIi 55 (115)
++.++|+++|.++-+.|-.+|- +.+--|||.
T Consensus 14 kk~eeler~lrk~kk~iKklEd----eNPWLGNIk 44 (50)
T 1a92_A 14 KKLEELERDLRKLKKKIKKLEE----DNPWLGNIK 44 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhc----cCCchhhhh
Confidence 4556678888888888888773 445578873
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.86 E-value=55 Score=21.23 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
.+..|-.++..++..+..||.++-..+.
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555544443
No 36
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=39.84 E-value=50 Score=18.50 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+|+.++..|+.+.+.|..
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345667788888888877777653
No 37
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=38.80 E-value=29 Score=24.24 Aligned_cols=26 Identities=35% Similarity=0.629 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
+|++++..|+.+|..++.+|-..+..
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888887554443
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=38.66 E-value=51 Score=21.41 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
..++..+..+-..|..++..++.+|..++..|
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666555443
No 39
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=38.24 E-value=31 Score=28.27 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccee
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIi 55 (115)
....+|+++-++|.++|+.||+++...|....+.-...+||+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455677888888888888888888888887765433344443
No 40
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=37.75 E-value=50 Score=24.99 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
+..++..|.+++.+|+..+..|+..|-.+++.
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677788888888888888888888776653
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.34 E-value=59 Score=21.04 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
...+..|-++...+++++..++.++|..
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777754
No 42
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.26 E-value=56 Score=18.41 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+||.++..|+.+++.|-.
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345667888888888888877643
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.89 E-value=63 Score=21.38 Aligned_cols=37 Identities=16% Similarity=0.314 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYEL---ETSYLQDI 48 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~---Et~YLeeT 48 (115)
+-.+|.+|-+.+..|+.+|..+|.+...+ |..|+.+.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45678888888888998888888875544 45565543
No 44
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.19 E-value=59 Score=18.30 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+|+.++..|+.+...|-.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455677899999999988887754
No 45
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=36.12 E-value=59 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+..+|..+-..-..++.+|..+|.+|-..|..+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 2gkw_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLETAS 37 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344455544455556778888888888888765
No 46
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.44 E-value=70 Score=19.50 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
..+..+|-.....|..++..|+.+|
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555444
No 47
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.10 E-value=70 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
.++++|..|.++=+.|++.+..+.++|-+.-
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999998888887665
No 48
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=35.02 E-value=62 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033604 19 LVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
|.+++..|+++++.|+..+-.
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~ 100 (109)
T 1r8d_A 80 LQSQKEILMKKKQRMDEMIQT 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555544433
No 49
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=34.83 E-value=79 Score=20.55 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
+|.+|.....--++|++++...+..|-++|-.-=+
T Consensus 29 lR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~d 63 (74)
T 2q6q_A 29 LRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLSD 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhccc
Confidence 57777777777888999999999999998865433
No 50
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=34.18 E-value=83 Score=19.93 Aligned_cols=30 Identities=7% Similarity=0.306 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 033604 17 AALVSKRSRFQDELRNIENQVYELETSYLQD 47 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLee 47 (115)
.++++++++-++.|+++=..|.++=.. +++
T Consensus 21 eevme~hk~adermK~~w~~Ii~KY~~-~ed 50 (63)
T 2yfv_C 21 EEVMERHKKADENMKRVWSQIIQKYES-IDN 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC
Confidence 467889999999999999999988666 444
No 51
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=33.30 E-value=13 Score=26.41 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=5.5
Q ss_pred ccceeecCcccc
Q 033604 51 FGNAFKGFEGFL 62 (115)
Q Consensus 51 ~GNIikGfDgyl 62 (115)
|+++++-|..++
T Consensus 73 Y~~L~KkYk~~~ 84 (119)
T 2avr_X 73 YQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 52
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=32.91 E-value=70 Score=22.10 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033604 18 ALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qI 37 (115)
-|.+++.+|+++++.|++.+
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~ 118 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNL 118 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.71 E-value=58 Score=22.95 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
-.+|-.+-..-..|+.++..++++||++
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777777777777764
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.43 E-value=84 Score=19.99 Aligned_cols=27 Identities=11% Similarity=0.226 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
...+..|-++...+++++..++.+||.
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777765
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.11 E-value=92 Score=19.99 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
.+..+|+++-.+-..|++++..+|.+|-+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45678888888888889999888888754
No 56
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.78 E-value=57 Score=26.74 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
.+++++.+|.++-+++..+++.++++++..|..
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 46 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNME 46 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999998876
No 57
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=31.42 E-value=85 Score=21.29 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVY 38 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy 38 (115)
+.++++..+++-+.|.+.+..||.+|-
T Consensus 87 l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 87 WKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666777777776664
No 58
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.41 E-value=42 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
+..+|+++-++|.++|+.||.++...|...-+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777777766543
No 59
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=31.16 E-value=93 Score=19.37 Aligned_cols=28 Identities=4% Similarity=0.153 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
....-|.+++..|+++++.|+..+-..+
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~ 66 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQ 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666555544
No 60
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=31.10 E-value=51 Score=22.63 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 7 RGNSNPAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 7 ~~~~~~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
++..+.++.|..|..+-++|+.+|..|+.
T Consensus 24 ~~~~~~~~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 24 PDVASLRQQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455667788888888888888888876
No 61
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.00 E-value=39 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNI 33 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~L 33 (115)
+.+..+.|.+|-..|+.+|.+-
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke 34 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKE 34 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 62
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=30.95 E-value=64 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+|..+=++|.+.|..||.+=||+|..-
T Consensus 46 ~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 46 QLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344455679999999999999998764
No 63
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.93 E-value=76 Score=20.27 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
+++|..|-.+=.+|+.++..|+.+|.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555444445555555555555543
No 64
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.79 E-value=77 Score=18.02 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+..+..+|+.++..|+.+.+.|..-+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45667788888888888888776543
No 65
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.79 E-value=36 Score=28.21 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+|+++-++|.++|+.||+++...|...
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666665554
No 66
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=29.67 E-value=94 Score=21.48 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
++..|.++...|+..+..|+..|..++
T Consensus 88 q~~~L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 88 QREVLLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555443
No 67
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.55 E-value=45 Score=19.83 Aligned_cols=18 Identities=6% Similarity=0.307 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 033604 24 SRFQDELRNIENQVYELE 41 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy~~E 41 (115)
..|+.+|+.||.+|-.++
T Consensus 52 ~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 52 EAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456677777777766544
No 68
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=29.31 E-value=88 Score=21.53 Aligned_cols=24 Identities=13% Similarity=0.291 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
++.++.++|+..+..|+..|-.+|
T Consensus 92 ~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444333
No 69
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.26 E-value=88 Score=20.19 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~q 36 (115)
..++..+.++..+|+..+..|+..
T Consensus 80 ~~~~~~l~~~i~~l~~~~~~l~~~ 103 (108)
T 2vz4_A 80 RRQHELLSARIGKLQKMAAAVEQA 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 70
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=28.82 E-value=54 Score=20.91 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT 48 (115)
.+|++.++.|.+|..++--+++++.-.-..-+++.
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~ 37 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQRELLTDH 37 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 57999999999999999999888755444444443
No 71
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.62 E-value=75 Score=21.59 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSYLQDI 48 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT 48 (115)
+...|.+-..+|...+....+||.++-++=++-|++-
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEA 67 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667778888888888888887777666653
No 72
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=28.44 E-value=64 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 19 LVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
|..+=++|.+.|..||.+=||+|..-
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv 72 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQI 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444578999999999999988764
No 73
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=28.10 E-value=80 Score=21.52 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~q 36 (115)
+.+..+|+.|..+.+.|+.+|..|+..
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l~~~ 45 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELTNKL 45 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355666777777777777777777764
No 74
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=27.94 E-value=77 Score=17.09 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033604 14 ATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+.-++|.+-|.+++.=|..||+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777778877777775
No 75
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Probab=27.89 E-value=58 Score=24.19 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
...+...|++||.+=..|.+.+..|+..||.
T Consensus 115 ~~~LP~~lr~Li~rS~rL~~RV~rLD~~~~~ 145 (169)
T 3ctw_B 115 VEELPFGLMNLLQRSERLYERVRHLDRRMYV 145 (169)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999999999999999995
No 76
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=27.82 E-value=1e+02 Score=18.41 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
...|+.|-++=..+-.+|+.||.+|
T Consensus 22 ~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 22 EELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555556666666666665
No 77
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.60 E-value=44 Score=28.31 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+|+++-++|.++|..||.++...|...
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 78
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.29 E-value=1.1e+02 Score=19.23 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..|++.-.+..+++.++..|.+.|-..|.
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~ 55 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTED 55 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555544443
No 79
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=26.91 E-value=79 Score=22.43 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 16 LAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
|.+|-.++..|+..++.||.+|-++|.
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~ 89 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEE 89 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 567788889999999999999998885
No 80
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=26.84 E-value=62 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033604 15 TLAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~q 36 (115)
....|+++|..|+..|..|+..
T Consensus 64 ~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 64 KVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443
No 81
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=26.81 E-value=44 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 033604 24 SRFQDELRNIENQVYELETS 43 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy~~Et~ 43 (115)
.-|+..|..|+.+|+..+++
T Consensus 49 ~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 49 RTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35888999999999988753
No 82
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=26.62 E-value=85 Score=21.43 Aligned_cols=30 Identities=7% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
-..+..|+.+|..|+..|..++..+-+.|-
T Consensus 68 EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888888888888888888777653
No 83
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.47 E-value=91 Score=17.41 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+|+.++..|+.+...|-.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456677888888888888877643
No 84
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=26.37 E-value=30 Score=21.50 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHH-hhcccccccc
Q 033604 24 SRFQDELRNIENQVY-ELETSYLQDI 48 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy-~~Et~YLeeT 48 (115)
-.|+.+|..||++.. +.=++||++-
T Consensus 23 dEL~aELe~LeqE~~~~~~~syL~~~ 48 (57)
T 2lxm_B 23 DDLEAELDALGDELLADEDSSYLDEA 48 (57)
T ss_dssp HHHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHh
Confidence 478999999998874 3336799863
No 85
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=26.12 E-value=55 Score=17.40 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 033604 25 RFQDELRNIENQVYELETS 43 (115)
Q Consensus 25 ~Le~~L~~LE~qIy~~Et~ 43 (115)
+|+.....||+++-.+|++
T Consensus 5 kldanvkrlekevgklege 23 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhhh
Confidence 4666667777777666654
No 86
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=26.02 E-value=32 Score=18.84 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 19 LVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
|-+|-..|+..-+..|++|..+|.
T Consensus 5 leqkiaaleqkcaaceqkiaaleq 28 (32)
T 4g1a_A 5 LEQKIAALEQKCAACEQKIAALEQ 28 (32)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666766663
No 87
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.97 E-value=85 Score=24.92 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
.++..+-++|-++||.++..|+.+|-+.+..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566677777777777777776643
No 88
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=25.93 E-value=1.2e+02 Score=19.79 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
|+.|.+.++.-++|..++..++.+|-.+.
T Consensus 26 R~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk 54 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIEQKDSEIARLR 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888999999998888885543
No 89
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.90 E-value=95 Score=23.89 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHhhc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQ---VYELE 41 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~q---Iy~~E 41 (115)
+-.++.++.+++.+|+.++..|+.+ |-.++
T Consensus 104 l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 104 VASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3455677777777888888888777 65543
No 90
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.86 E-value=41 Score=28.48 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhcccccc
Q 033604 20 VSK-RSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 20 l~k-r~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
+++ .++|.++|+.||.++...|...-+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 677888888888887777766543
No 91
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.75 E-value=64 Score=19.23 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 033604 24 SRFQDELRNIENQVYEL 40 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy~~ 40 (115)
.+|+++++.||.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~e 31 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQ 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555566666555543
No 92
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.67 E-value=98 Score=20.18 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 9 NSNPAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 9 ~~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
...+..+|+++-.+-..|++++..+|.++-+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4456678888888888999999999888754
No 93
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.94 E-value=76 Score=21.07 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 033604 21 SKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 21 ~kr~~Le~~L~~LE~qIy~~Et 42 (115)
.+-..|+.+..+|+++|...+.
T Consensus 8 ~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 8 SRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555544443
No 94
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=24.72 E-value=1e+02 Score=17.38 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVY 38 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy 38 (115)
-..|...|.|-+.||.+=..||.+|-
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788899999999999998884
No 95
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.64 E-value=1.3e+02 Score=19.02 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
.+++.+|++-...|.++|.-+++.|-.+-
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 46778899999999999999999887654
No 96
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.63 E-value=1.2e+02 Score=19.94 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
...++++-.+..+++.++..|.+.|-..|.
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666655443
No 97
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.61 E-value=1.2e+02 Score=20.63 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
+++++..|-.-+..|.++++.||-+|-.
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555566666666666666533
No 98
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.70 E-value=1.3e+02 Score=21.18 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 18 ALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 18 ~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
..-.-+++|+.+++..|+-|.+||.-
T Consensus 79 kYk~~~~~Ld~eI~~qe~iI~nFe~I 104 (119)
T 2avr_X 79 KYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445778999999999999999875
No 99
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=23.30 E-value=57 Score=19.78 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 033604 24 SRFQDELRNIENQVYELETS 43 (115)
Q Consensus 24 ~~Le~~L~~LE~qIy~~Et~ 43 (115)
.-|+..|..|+.+|+..+++
T Consensus 31 ~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 31 RTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 35788899999999887753
No 100
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.28 E-value=1.1e+02 Score=17.19 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIEN 35 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~ 35 (115)
+..+..+|+.++..|+.+.+.|-.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456678899999999988887754
No 101
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.09 E-value=1.1e+02 Score=19.76 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETSYLQD 47 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLee 47 (115)
++++++..+...+..|+-++..+...+-++=.-|=+|
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888889999999998888888776666443
No 102
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=23.06 E-value=1e+02 Score=22.20 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+|.+.|..|..|.+++.+|+..|...
T Consensus 5 KLAEAL~lRadl~kri~qL~~ri~~n 30 (154)
T 3kdq_A 5 YLAEALAQRVEAQRRYSELNQLLLDV 30 (154)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999999999876
No 103
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.56 E-value=68 Score=17.62 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q 033604 25 RFQDELRNIENQVYELE 41 (115)
Q Consensus 25 ~Le~~L~~LE~qIy~~E 41 (115)
+|+++.++-|.+-|.+|
T Consensus 5 qlekevaqaeaenyqle 21 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLE 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 34444444444444444
No 104
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.54 E-value=1.6e+02 Score=19.49 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
|..|.+.|..=++|.+++..|+.+|-.+.
T Consensus 38 R~AL~eaL~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 38 RKALYEALKENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888888888888888886543
No 105
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.42 E-value=69 Score=21.48 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
..++..+...+..|...+..+++-|-..++
T Consensus 14 ~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 14 QSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666666666665555543
No 106
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=22.24 E-value=1.2e+02 Score=24.00 Aligned_cols=33 Identities=15% Similarity=0.414 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
.+...+...-++-+++++.++.|-+.||..|-+
T Consensus 220 ~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~ 252 (268)
T 2yo3_A 220 EMNSKIKGVENKMKQIEDKIEEILSKIYHIENE 252 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888999999999999988864
No 107
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.99 E-value=86 Score=20.96 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccceeecCcc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAFKGFEG 60 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIikGfDg 60 (115)
.+++|...++.|.+++..++++|-.+-+. ....|++++=.|.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~----P~~Vg~v~e~~d~ 49 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSP----PLLVGVVSDILED 49 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSC----CEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CceEEEEEEEecC
Confidence 45677777888888888888888776542 1237888887763
No 108
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=21.90 E-value=1.1e+02 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 033604 17 AALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
.+|+++|++|+.-|+.|+.+-..
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~ 43 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAE 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999988776443
No 109
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.80 E-value=1.3e+02 Score=23.56 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
+-.++..|-.+|+.+.++|+.||+.=..+|...
T Consensus 182 ID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 182 IEVEVENLRQKKEKLLGKIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456788899999999999999999877777654
No 110
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.60 E-value=1.5e+02 Score=21.51 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033604 16 LAALVSKRSRFQDELRNIENQ 36 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~q 36 (115)
+.++.++.++|+..++.|+..
T Consensus 88 ~~~l~~~i~~l~~~~~~l~~~ 108 (278)
T 1r8e_A 88 ERQIREKLDFLSALEQTISLV 108 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 111
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=20.53 E-value=72 Score=22.36 Aligned_cols=44 Identities=16% Similarity=0.431 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcc-----------ccccccccccceeec
Q 033604 12 PAATLAALVSKRSRFQDEL---RNIENQVYELET-----------SYLQDIGQFGNAFKG 57 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L---~~LE~qIy~~Et-----------~YLeeT~~~GNIikG 57 (115)
+..+++.|+.-++++++++ ..|++.++..|. -||-+. -|+||-.
T Consensus 13 p~~~~~~l~~~~~~ie~~~~~~~~l~r~l~~l~~~~~~~~d~~~r~~l~d~--eG~Il~~ 70 (138)
T 3v67_A 13 PDEHYQRIIETRDAIQNKYSKETDLGRILFRVEGNRAGKHDPRPRVFFSDY--NGNVLTT 70 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHTCCCTTCCSCEEEEECT--TSCEECC
T ss_pred CHHHHHHHHHHHHHHHHHhccCccHHHHHHHhcccccccCCCCccEEEEcC--CCCEecC
Confidence 4567888888888888887 456777777764 355443 4777754
No 112
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.14 E-value=1.8e+02 Score=20.47 Aligned_cols=33 Identities=6% Similarity=0.138 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 10 SNPAATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 10 ~~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
....+....+.+.+++++.+++.||.-+-+.++
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 196 (203)
T 3qks_A 164 DKFETAYKKLSELKKTINNRIKEYRDILARTEG 196 (203)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344455556666666777777777765555443
No 113
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=20.11 E-value=1.7e+02 Score=19.01 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
...++++-.+..+++.++..|.+.|-..|.
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666655444
Done!