Query 033604
Match_columns 115
No_of_seqs 107 out of 170
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 06:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033604.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033604hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 52.0 5.4 0.00039 25.4 3.0 32 15-46 2-33 (133)
2 d1b5qa2 d.16.1.5 (A:294-405) P 51.1 1.5 0.00011 26.4 -0.0 12 102-113 101-112 (112)
3 d1r8da_ a.6.1.3 (A:) Multidrug 48.0 9.5 0.00069 23.4 3.6 27 13-39 81-107 (109)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 40.5 27 0.0019 20.7 4.9 28 13-40 58-85 (88)
5 d1seta1 a.2.7.1 (A:1-110) Sery 40.2 17 0.0012 22.4 4.0 41 15-55 65-105 (110)
6 d2azeb1 e.63.1.2 (B:201-301) T 37.8 28 0.0021 21.8 4.8 31 11-41 5-35 (101)
7 d2dw4a3 d.16.1.5 (A:655-763) L 31.1 6.3 0.00046 23.1 0.5 10 103-112 99-108 (109)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 30.5 42 0.003 20.4 4.7 32 13-44 64-95 (107)
9 d1lrza1 a.2.7.4 (A:245-309) Me 28.3 46 0.0034 19.3 4.3 22 16-37 5-26 (65)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 28.1 48 0.0035 20.5 4.7 28 14-41 95-122 (133)
11 d1seta1 a.2.7.1 (A:1-110) Sery 26.3 58 0.0042 19.7 4.8 29 12-40 69-97 (110)
12 d1ivsa1 a.2.7.3 (A:797-862) Va 26.3 52 0.0038 18.4 4.6 26 12-37 2-27 (66)
13 d1nkpb_ a.38.1.1 (B:) Max prot 26.2 56 0.0041 18.9 4.6 22 17-38 57-78 (83)
14 d1fxka_ a.2.5.1 (A:) Prefoldin 24.1 64 0.0046 19.5 4.7 31 12-42 13-43 (107)
15 d2iida2 d.16.1.5 (A:320-432) L 23.5 9.1 0.00066 22.7 0.3 11 103-113 103-113 (113)
16 d2v5za2 d.16.1.5 (A:290-401) M 23.5 12 0.0009 21.9 0.9 11 103-113 101-111 (112)
17 d1eema1 a.45.1.1 (A:103-241) C 22.1 58 0.0042 19.5 4.2 27 21-47 39-65 (139)
18 d1lvfa_ a.47.2.1 (A:) Syntaxin 21.0 56 0.0041 20.1 3.9 25 19-43 40-64 (106)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=51.98 E-value=5.4 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQ 46 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLe 46 (115)
.|.+|....+.|+.+|..|+.+|...+..--+
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e 33 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISE 33 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777655433
No 2
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=51.11 E-value=1.5 Score=26.36 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=10.2
Q ss_pred CCcccccCCCCC
Q 033604 102 DYLPWNVGSFSN 113 (115)
Q Consensus 102 ~~~p~~~~~~~~ 113 (115)
.-.||.+|||||
T Consensus 101 ~~dp~~~GsYS~ 112 (112)
T d1b5qa2 101 WSDRFYKGTFSN 112 (112)
T ss_dssp TTCTTTSSSEEE
T ss_pred CCCCCccccCCC
Confidence 468999999986
No 3
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=47.96 E-value=9.5 Score=23.35 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYE 39 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~ 39 (115)
......+.++++.|++.++.|++.|-.
T Consensus 81 ~~~~~~l~~~~~~l~~~~~~l~~~l~~ 107 (109)
T d1r8da_ 81 QSQKEILMKKKQRMDEMIQTIDRTLLS 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666777777777777776644
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.54 E-value=27 Score=20.68 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
.+++..|..++..|..+...|.++|-.+
T Consensus 58 ~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 58 QAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555443
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=40.25 E-value=17 Score=22.38 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccee
Q 033604 15 TLAALVSKRSRFQDELRNIENQVYELETSYLQDIGQFGNAF 55 (115)
Q Consensus 15 ~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~YLeeT~~~GNIi 55 (115)
...+++++=+.|.+++..||.+.-..|..+-+--...+||+
T Consensus 65 ~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi~ 105 (110)
T d1seta1 65 EKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34456666677777888888887777777666544456664
No 6
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.76 E-value=28 Score=21.85 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 11 NPAATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 11 ~~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
.++++|..|.++-+.|++.+..+.++|-++-
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999998888888876653
No 7
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.05 E-value=6.3 Score=23.05 Aligned_cols=10 Identities=50% Similarity=0.979 Sum_probs=8.8
Q ss_pred CcccccCCCC
Q 033604 103 YLPWNVGSFS 112 (115)
Q Consensus 103 ~~p~~~~~~~ 112 (115)
.+||.+||||
T Consensus 99 ~dp~~~GsYS 108 (109)
T d2dw4a3 99 ADPWARGSYS 108 (109)
T ss_dssp TCTTTSSSCE
T ss_pred CCCccCEecC
Confidence 5899999997
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.50 E-value=42 Score=20.45 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 033604 13 AATLAALVSKRSRFQDELRNIENQVYELETSY 44 (115)
Q Consensus 13 ~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et~Y 44 (115)
...+..|-.+...|+.++..|++++-.++..+
T Consensus 64 ~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l 95 (107)
T d1fxka_ 64 DELTEELQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667778888888888877776654
No 9
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=28.30 E-value=46 Score=19.34 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033604 16 LAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 16 L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
|..|-.++..|+.+|..++..|
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~l 26 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDI 26 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555544443
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.08 E-value=48 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033604 14 ATLAALVSKRSRFQDELRNIENQVYELE 41 (115)
Q Consensus 14 ~~L~~Ll~kr~~Le~~L~~LE~qIy~~E 41 (115)
+.+..+-+..+.|.+++..++.+|-.++
T Consensus 95 ~ri~~l~~~~~~l~~~~~~~~~~i~~l~ 122 (133)
T d1fxkc_ 95 SQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555554443
No 11
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=26.28 E-value=58 Score=19.67 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYEL 40 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~ 40 (115)
+.++.+.|=.+-+.|+.++..+|.++++.
T Consensus 69 l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 69 LIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888888764
No 12
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=26.26 E-value=52 Score=18.36 Aligned_cols=26 Identities=0% Similarity=-0.135 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQV 37 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qI 37 (115)
+.+++.-|-++...++.++..++..+
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 13
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.24 E-value=56 Score=18.85 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033604 17 AALVSKRSRFQDELRNIENQVY 38 (115)
Q Consensus 17 ~~Ll~kr~~Le~~L~~LE~qIy 38 (115)
..|......|..+...|+++|-
T Consensus 57 ~~l~~~~~~l~~~~~~L~~~l~ 78 (83)
T d1nkpb_ 57 HTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 14
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.07 E-value=64 Score=19.52 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033604 12 PAATLAALVSKRSRFQDELRNIENQVYELET 42 (115)
Q Consensus 12 ~~~~L~~Ll~kr~~Le~~L~~LE~qIy~~Et 42 (115)
++.+|..+..++.+|+.++...+.-+-.++.
T Consensus 13 lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 13 LQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777777776666666553
No 15
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=23.52 E-value=9.1 Score=22.69 Aligned_cols=11 Identities=9% Similarity=0.329 Sum_probs=9.5
Q ss_pred CcccccCCCCC
Q 033604 103 YLPWNVGSFSN 113 (115)
Q Consensus 103 ~~p~~~~~~~~ 113 (115)
-+||..|+||+
T Consensus 103 ~dp~~~GaYSs 113 (113)
T d2iida2 103 LDKYAMGGITT 113 (113)
T ss_dssp GCTTTCSSEEC
T ss_pred CCCCccccCCC
Confidence 58999999985
No 16
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.51 E-value=12 Score=21.94 Aligned_cols=11 Identities=9% Similarity=0.299 Sum_probs=9.4
Q ss_pred CcccccCCCCC
Q 033604 103 YLPWNVGSFSN 113 (115)
Q Consensus 103 ~~p~~~~~~~~ 113 (115)
-+||.+|+||.
T Consensus 101 ~dp~~~GsYs~ 111 (112)
T d2v5za2 101 EEQYSGGCYTT 111 (112)
T ss_dssp GCTTTCSSSCB
T ss_pred CCCccCccccc
Confidence 58999999984
No 17
>d1eema1 a.45.1.1 (A:103-241) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.09 E-value=58 Score=19.49 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc
Q 033604 21 SKRSRFQDELRNIENQVYELETSYLQD 47 (115)
Q Consensus 21 ~kr~~Le~~L~~LE~qIy~~Et~YLee 47 (115)
+.++++.+.|..+|+.+-+.++.|+-.
T Consensus 39 ~~~~~~~~~l~~le~~L~~~~~~f~~G 65 (139)
T d1eema1 39 GLKEEFRKEFTKLEEVLTNKKTTFFGG 65 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSBTTB
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEee
Confidence 456688899999999998888889853
No 18
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.02 E-value=56 Score=20.05 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Q 033604 19 LVSKRSRFQDELRNIENQVYELETS 43 (115)
Q Consensus 19 Ll~kr~~Le~~L~~LE~qIy~~Et~ 43 (115)
+..-+++|...|..||.+|-++|.+
T Consensus 40 ~~~~~~eL~~~l~siewdL~dLe~a 64 (106)
T d1lvfa_ 40 IDWTTNELRNNLRSIEWDLEDLDET 64 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445777888888888888877754
Done!