BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033605
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXX 63
K+L L L+ F NPKV LEQY T + AS +L+ A S GD+ KVVAD
Sbjct: 6 KELAIALSKLKGFKNPKVWLEQYRTPGNAASELLWLA-YSLGDIEGKVVADLGAGTGVLS 64
Query: 64 XXXXXXXXDQVIAIDIDSDSLELASENAADLE 95
+VI +++D +++++ EN + +
Sbjct: 65 YGALLLGAKEVICVEVDKEAVDVLIENLGEFK 96
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFXXXXXXXXXX 65
LE L L+Q N K LEQYPT A+ L N G++ + V D
Sbjct: 10 LEIRLQKLQQQGNFKNYLEQYPTDASTAAYFLIEIYND-GNIGGRSVIDAGTGNGILACG 68
Query: 66 XXXXXXDQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114
+ V A DID D++E A N ++F D+ + GKY
Sbjct: 69 SYLLGAESVTAFDIDPDAIETAKRNCG----GVNFXVADVSEIS--GKY 111
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK 113
+V+ +DI D + A E A E +++F+ D R L + K
Sbjct: 62 EVVGVDISEDXIRKAREYAKSRESNVEFIVGDARKLSFEDK 102
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 73 QVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
+V +D+ + LE+A E A + +DF D R LE
Sbjct: 56 EVTGVDLSEEXLEIAQEKAXETNRHVDFWVQDXRELE 92
>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
pdb|4EEZ|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase Variant Re1
Length = 348
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 73 QVIAIDIDSDSLELASENAADLELD 97
+VIA+DI+ D L LA + AD+ ++
Sbjct: 190 KVIAVDINQDKLNLAKKIGADVTIN 214
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 74 VIAIDIDSDSLELASENAADLELD 97
V+A+DI + LELA E ADL ++
Sbjct: 191 VVAVDIGDEKLELAKELGADLVVN 214
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 74 VIAIDIDSDSLELASENAADLELD 97
V+A+DI + LELA E ADL ++
Sbjct: 191 VVAVDIGDEKLELAKELGADLVVN 214
>pdb|1O9G|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 1.5a
Length = 250
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 QVIAIDIDSDSLELASENAADL 94
QVIA D+D LELA++N A L
Sbjct: 79 QVIASDVDPAPLELAAKNLALL 100
>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|B Chain B, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|C Chain C, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|2XAA|D Chain D, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm
44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol
pdb|3JV7|A Chain A, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|B Chain B, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|C Chain C, Structure Of Adh-A From Rhodococcus Ruber
pdb|3JV7|D Chain D, Structure Of Adh-A From Rhodococcus Ruber
Length = 345
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 73 QVIAIDIDSDSLELASENAAD 93
+VIA+D+D D L LA E AD
Sbjct: 198 RVIAVDLDDDRLALAREVGAD 218
>pdb|1O9H|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 2.4a
Length = 250
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 QVIAIDIDSDSLELASENAADL 94
QVIA D+D LELA++N A L
Sbjct: 79 QVIASDVDPAPLELAAKNLALL 100
>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
pdb|4EEX|B Chain B, Crystal Structure Of Lactococcus Lactis Alcohol
Dehydrogenase
Length = 348
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 73 QVIAIDIDSDSLELASENAADL 94
+VIA+DI+ D L LA + AD+
Sbjct: 190 KVIAVDINQDKLNLAKKIGADV 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,716,236
Number of Sequences: 62578
Number of extensions: 72956
Number of successful extensions: 220
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 17
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)