BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033605
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K1A0|METL5_MOUSE Methyltransferase-like protein 5 OS=Mus musculus GN=Mettl5 PE=2
SV=2
Length = 209
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
+KLK+LES L +++ F PK+ LEQYPT PHIA+ MLYT N++ D+ NK VAD GCGCG
Sbjct: 4 LKLKELESRLQEVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKAVADLGCGCG 63
Query: 61 TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111
L A +LGA + DID D+LE+ ++N + EL ++D +QCD+ +L R
Sbjct: 64 VLSIGAAMLGAGLCVGFDIDEDALEIFNKNVEEFELTNVDMIQCDVYSLSNR 115
>sp|Q9NRN9|METL5_HUMAN Methyltransferase-like protein 5 OS=Homo sapiens GN=METTL5 PE=1
SV=1
Length = 209
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
++LK+LES L ++ F PK+ LEQYPT PHIA+ MLYT N++ D+ NKVVAD GCGCG
Sbjct: 4 VRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAACMLYTIHNTYDDIENKVVADLGCGCG 63
Query: 61 TLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105
L +LGA + DID D+LE+ + NA + EL +ID VQCD+
Sbjct: 64 VLSIGTAMLGAGLCVGFDIDEDALEIFNRNAEEFELTNIDMVQCDV 109
>sp|Q57732|Y284_METJA Uncharacterized protein MJ0284 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0284 PE=4 SV=1
Length = 219
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCG 60
+K K LE +L L++ NPK +LEQY +A+ +L+ A N F N VV D GCG G
Sbjct: 2 IKKKHLEMMLDSLKRHPNPKADLEQYTIDGKLAADILFFAVNDF---YNNVVIDLGCGTG 58
Query: 61 TLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109
L + +LGA + I IDID +S+E A ENA L +D+DF DIR+++
Sbjct: 59 RLAIGSKILGAKRAIGIDIDRESIEAAKENAKKLNVDVDFYCMDIRDVD 107
>sp|Q1QA78|PRMA_PSYCK Ribosomal protein L11 methyltransferase OS=Psychrobacter
cryohalolentis (strain K5) GN=prmA PE=3 SV=1
Length = 308
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 28 TGPHIASRML--YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
TG H +R+ + E D+++KVV D+GCG G LG AA LLGA V A+DID ++
Sbjct: 142 TGYHATTRLCLDWLTEQ---DLTDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAVL 198
Query: 86 LASENAADLELD 97
++NAA +D
Sbjct: 199 ATNQNAARNSVD 210
>sp|B0VLL0|PRMA_ACIBS Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii
(strain SDF) GN=prmA PE=3 SV=1
Length = 301
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H AS L DV NK+V D+GCG G LG AA LLGA +V A DID ++
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKNKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196
Query: 86 LASENA 91
+NA
Sbjct: 197 ATKQNA 202
>sp|A5IN97|PRMA_THEP1 Ribosomal protein L11 methyltransferase OS=Thermotoga petrophila
(strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=prmA PE=3
SV=1
Length = 264
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H +RM + N V+ D GCG G L AA LGA QV+A+D+D ++E
Sbjct: 108 FGTGLHPTTRMSVFFLKKYLKEGNTVL-DVGCGTGILAIAAKKLGASQVVAVDVDEQAVE 166
Query: 86 LASENAADLELDI 98
+A EN ++D+
Sbjct: 167 VAEENVRKNDVDV 179
>sp|Q4FRP0|PRMA_PSYA2 Ribosomal protein L11 methyltransferase OS=Psychrobacter arcticus
(strain DSM 17307 / 273-4) GN=prmA PE=3 SV=1
Length = 308
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 28 TGPHIASRML--YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
TG H +R+ + E D+ +KVV D+GCG G LG AA LLGA V A+DID ++
Sbjct: 142 TGYHATTRLCLDWLTEQ---DLKDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAVL 198
Query: 86 LASENAADLELD 97
++NAA +D
Sbjct: 199 ATNQNAARNSVD 210
>sp|B1L841|PRMA_THESQ Ribosomal protein L11 methyltransferase OS=Thermotoga sp. (strain
RQ2) GN=prmA PE=3 SV=1
Length = 264
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H +RM + N V+ D GCG G L AA LGA QV+A+D+D ++E
Sbjct: 108 FGTGLHPTTRMSVFFLKKYLKEGNTVL-DVGCGTGILAIAAKKLGASQVVAVDVDEQAVE 166
Query: 86 LASENAADLELDI 98
+A EN ++D+
Sbjct: 167 VAEENVRKNDVDV 179
>sp|C4K4P6|PRMA_HAMD5 Ribosomal protein L11 methyltransferase OS=Hamiltonella defensa
subsp. Acyrthosiphon pisum (strain 5AT) GN=prmA PE=3
SV=1
Length = 305
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+ NK++ DFGCG G L AA LGA Q I IDID ++E
Sbjct: 144 FGTGTHPTTALCLEWLDSL-DLQNKILIDFGCGSGILAIAALKLGAKQAIGIDIDPQAIE 202
Query: 86 LASENA 91
+ +NA
Sbjct: 203 ASRDNA 208
>sp|A7MXI3|PRMA_VIBHB Ribosomal protein L11 methyltransferase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=prmA PE=3 SV=1
Length = 295
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + S D+S K V DFGCG G L AA LGA++VI IDID +L+
Sbjct: 138 FGTGTHPTTALCLEWLESL-DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQ 196
Query: 86 LASENA 91
+ +NA
Sbjct: 197 ASRDNA 202
>sp|Q3IIC0|PRMA_PSEHT Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=prmA PE=3 SV=1
Length = 293
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + S D++ K V DFGCG G LG AA LGA+++I IDID +LE
Sbjct: 137 FGTGTHATTALCLKWLES-QDLTGKTVVDFGCGSGILGIAAIKLGAERMIGIDIDPQALE 195
Query: 86 LASENA 91
+ +NA
Sbjct: 196 ASLDNA 201
>sp|A5WFX2|PRMA_PSYWF Ribosomal protein L11 methyltransferase OS=Psychrobacter sp.
(strain PRwf-1) GN=prmA PE=3 SV=1
Length = 307
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H +R+ D+S+KV+ D+GCG G LG AA LLGA QV ++DID ++
Sbjct: 138 TGYHATTRLCLDWLTD-QDLSDKVIIDYGCGSGILGIAALLLGAKQVYSVDIDPQAVLAT 196
Query: 88 SENA 91
+NA
Sbjct: 197 KQNA 200
>sp|B8F6T6|PRMA_HAEPS Ribosomal protein L11 methyltransferase OS=Haemophilus parasuis
serovar 5 (strain SH0165) GN=prmA PE=3 SV=1
Length = 294
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + T +S D+++K V DFGCG G L AA LGA + I IDID ++
Sbjct: 137 FGTGTHPTTALCLTWLDSL-DLTDKTVIDFGCGSGILAIAALKLGAKKAIGIDIDPQAI- 194
Query: 86 LASENAADL 94
LAS+N A++
Sbjct: 195 LASQNNAEV 203
>sp|Q9X0G8|PRMA_THEMA Ribosomal protein L11 methyltransferase OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=prmA PE=3 SV=1
Length = 264
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H +RM + N V+ D GCG G L AA LGA +V+A+D+D ++E
Sbjct: 108 FGTGLHPTTRMSVFFLKKYLKEGNTVL-DVGCGTGILAIAAKKLGASRVVAVDVDEQAVE 166
Query: 86 LASENAADLELDI 98
+A EN ++D+
Sbjct: 167 VAEENVRKNDVDV 179
>sp|B0V7H8|PRMA_ACIBY Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii
(strain AYE) GN=prmA PE=3 SV=1
Length = 301
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H AS L DV +K+V D+GCG G LG AA LLGA +V A DID ++
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196
Query: 86 LASENA 91
+NA
Sbjct: 197 ATKQNA 202
>sp|A3M6R7|PRMA_ACIBT Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=prmA PE=3 SV=2
Length = 301
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H AS L DV +K+V D+GCG G LG AA LLGA +V A DID ++
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196
Query: 86 LASENA 91
+NA
Sbjct: 197 ATKQNA 202
>sp|B7IC17|PRMA_ACIB5 Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii
(strain AB0057) GN=prmA PE=3 SV=1
Length = 301
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H AS L DV +K+V D+GCG G LG AA LLGA +V A DID ++
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196
Query: 86 LASENA 91
+NA
Sbjct: 197 ATKQNA 202
>sp|B7H0I7|PRMA_ACIB3 Ribosomal protein L11 methyltransferase OS=Acinetobacter baumannii
(strain AB307-0294) GN=prmA PE=3 SV=1
Length = 301
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H AS L DV +K+V D+GCG G LG AA LLGA +V A DID ++
Sbjct: 138 FGTGNH-ASTFLCLQWLGKTDVKDKIVIDYGCGSGILGVAALLLGAKKVYATDIDPQAVL 196
Query: 86 LASENA 91
+NA
Sbjct: 197 ATKQNA 202
>sp|C4LAF1|PRMA_TOLAT Ribosomal protein L11 methyltransferase OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=prmA PE=3 SV=1
Length = 292
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H + + +S D+ K + DFGCG G L AA LGA++VI IDID ++E +
Sbjct: 137 TGTHPTTALCLQWLDSL-DLKGKTLVDFGCGSGILAIAALKLGAERVIGIDIDPQAIEAS 195
Query: 88 SENA 91
+NA
Sbjct: 196 RDNA 199
>sp|A4SJL7|PRMA_AERS4 Ribosomal protein L11 methyltransferase OS=Aeromonas salmonicida
(strain A449) GN=prmA PE=3 SV=1
Length = 292
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
D++ K V DFGCG G LG AA LGA +VI IDID +++ + +NA
Sbjct: 154 DLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNA 199
>sp|Q8DD03|PRMA_VIBVU Ribosomal protein L11 methyltransferase OS=Vibrio vulnificus
(strain CMCP6) GN=prmA PE=3 SV=1
Length = 295
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + S D+S K V DFGCG G L AA LGA++VI IDID +L
Sbjct: 138 FGTGTHPTTALCLEWLESL-DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALL 196
Query: 86 LASENA 91
+ +NA
Sbjct: 197 ASKDNA 202
>sp|Q15ZR4|PRMA_PSEA6 Ribosomal protein L11 methyltransferase OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) GN=prmA PE=3 SV=1
Length = 292
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + ++ ++S+K+V DFGCG G LG AA LGA +V+ IDID +L
Sbjct: 137 FGTGTHPTTALCLRWLDAL-ELSDKLVVDFGCGSGILGIAAIKLGAKRVVGIDIDPQAL- 194
Query: 86 LASENAAD 93
L+S+ AD
Sbjct: 195 LSSQTNAD 202
>sp|A0KNJ1|PRMA_AERHH Ribosomal protein L11 methyltransferase OS=Aeromonas hydrophila
subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=prmA
PE=3 SV=1
Length = 292
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 32/46 (69%)
Query: 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
D++ K V DFGCG G LG AA LGA +VI IDID +++ + +NA
Sbjct: 154 DLAGKTVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNA 199
>sp|Q87KU2|PRMA_VIBPA Ribosomal protein L11 methyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=prmA PE=3 SV=1
Length = 295
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + S D+S K V DFGCG G L AA LGA++VI IDID +L
Sbjct: 138 FGTGTHPTTALCLEWLESM-DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALL 196
Query: 86 LASENA 91
+ +NA
Sbjct: 197 ASKDNA 202
>sp|Q489G6|PRMA_COLP3 Ribosomal protein L11 methyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=prmA PE=3
SV=1
Length = 293
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H + + T + D+ +K V DFGCG G L AA LGA +VI IDID +L+ +
Sbjct: 140 TGTHPTTALCLTWLDGL-DLQDKTVVDFGCGSGILSLAALKLGAKKVIGIDIDPQALQAS 198
Query: 88 SENA 91
NA
Sbjct: 199 LANA 202
>sp|Q9KV64|PRMA_VIBCH Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=prmA
PE=3 SV=1
Length = 295
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + ++ D+S K V DFGCG G L AA LGA +VI IDID +L
Sbjct: 138 FGTGTHPTTALCLEWLDNL-DLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALL 196
Query: 86 LASENAA 92
+ +NAA
Sbjct: 197 ASKDNAA 203
>sp|A5IHD3|PRMA_LEGPC Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
(strain Corby) GN=prmA PE=3 SV=1
Length = 289
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H + + T D+ NK V D+GCG G L AA LGA V A+DID+ +L+
Sbjct: 136 TGTHATTSLCLTWLEQ-ADLKNKSVIDYGCGSGILSLAAIKLGAKHVYAVDIDNQALQAT 194
Query: 88 SENA 91
NA
Sbjct: 195 QNNA 198
>sp|B3PBH5|PRMA_CELJU Ribosomal protein L11 methyltransferase OS=Cellvibrio japonicus
(strain Ueda107) GN=prmA PE=3 SV=1
Length = 294
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 28 TGPHIASR--MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
TG H + M + + F D+ V D+GCG G LG AA LLGA +V+ +DID +L
Sbjct: 138 TGTHPTTFLCMQWIDQQDFTDLE---VIDYGCGSGILGIAALLLGARKVVGVDIDPQALL 194
Query: 86 LASENAADLELDID 99
+ENA +L D
Sbjct: 195 ATTENAKRNQLPAD 208
>sp|P60094|PRMA_VIBVY Ribosomal protein L11 methyltransferase OS=Vibrio vulnificus
(strain YJ016) GN=prmA PE=3 SV=1
Length = 295
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
D+S K V DFGCG G L AA LGA++VI IDID +L + +NA
Sbjct: 157 DLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALLASKDNA 202
>sp|B0TJ37|PRMA_SHEHH Ribosomal protein L11 methyltransferase OS=Shewanella halifaxensis
(strain HAW-EB4) GN=prmA PE=3 SV=1
Length = 293
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
D SNK V DFGCG G L AA LGA++V IDID ++E + NA
Sbjct: 156 DYSNKDVIDFGCGSGILAVAALKLGAERVTGIDIDYQAIEASKANA 201
>sp|Q0HQK1|PRMA_SHESR Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-7) GN=prmA PE=3 SV=1
Length = 293
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+SN+ V DFGCG G L AA LGA +V IDID ++E
Sbjct: 137 FGTGTHPTTALCLEWLDSL-DLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIE 195
Query: 86 LASENA 91
+ NA
Sbjct: 196 ASKANA 201
>sp|Q0HN86|PRMA_SHESM Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
MR-4) GN=prmA PE=3 SV=1
Length = 293
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+SN+ V DFGCG G L AA LGA +V IDID ++E
Sbjct: 137 FGTGTHPTTALCLEWLDSL-DLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIE 195
Query: 86 LASENA 91
+ NA
Sbjct: 196 ASKANA 201
>sp|A0KS74|PRMA_SHESA Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
ANA-3) GN=prmA PE=3 SV=1
Length = 293
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+SN+ V DFGCG G L AA LGA +V IDID ++E
Sbjct: 137 FGTGTHPTTALCLEWLDSL-DLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIE 195
Query: 86 LASENA 91
+ NA
Sbjct: 196 ASKANA 201
>sp|A8GZI2|PRMA_SHEPA Ribosomal protein L11 methyltransferase OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=prmA PE=3 SV=1
Length = 293
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91
D SNK V DFGCG G L AA LGA++V IDID ++E + NA
Sbjct: 156 DYSNKDVIDFGCGSGILAVAALKLGAERVTGIDIDYQAIEASKANA 201
>sp|C3LQP9|PRMA_VIBCM Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain M66-2) GN=prmA PE=3 SV=1
Length = 295
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + ++ D++ K V DFGCG G L AA LGA +VI IDID +L
Sbjct: 138 FGTGTHPTTALCLEWLDNL-DLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALL 196
Query: 86 LASENAA 92
+ +NAA
Sbjct: 197 ASKDNAA 203
>sp|Q5X7S8|PRMA_LEGPA Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
(strain Paris) GN=prmA PE=3 SV=1
Length = 289
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H + + T D+ NK + D+GCG G L AA LGA V A+DID+ +L+
Sbjct: 136 TGTHATTSLCLTWLEQ-ADLKNKSIIDYGCGSGILSLAAIKLGAKHVYAVDIDNQALQAT 194
Query: 88 SENA 91
NA
Sbjct: 195 QSNA 198
>sp|Q5ZYB1|PRMA_LEGPH Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=prmA PE=3 SV=1
Length = 289
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H + + T D+ NK + D+GCG G L AA LGA V A+DID+ +L+
Sbjct: 136 TGTHATTSLCLTWLEQ-ADLKNKSIIDYGCGSGILSLAAIKLGAKHVYAVDIDNQALQAT 194
Query: 88 SENA 91
NA
Sbjct: 195 QSNA 198
>sp|A5F3S3|PRMA_VIBC3 Ribosomal protein L11 methyltransferase OS=Vibrio cholerae serotype
O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=prmA PE=3
SV=1
Length = 295
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + ++ D++ K V DFGCG G L AA LGA +VI IDID +L
Sbjct: 138 FGTGTHPTTALCLEWLDNL-DLTGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALL 196
Query: 86 LASENAA 92
+ +NAA
Sbjct: 197 ASKDNAA 203
>sp|Q5WZ79|PRMA_LEGPL Ribosomal protein L11 methyltransferase OS=Legionella pneumophila
(strain Lens) GN=prmA PE=3 SV=1
Length = 289
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87
TG H + + T D+ NK + D+GCG G L AA LGA V A+DID+ +L+
Sbjct: 136 TGTHATTSLCLTWLEQ-ADLKNKSIIDYGCGSGILSLAAIKLGAKHVYAVDIDNQALQAT 194
Query: 88 SENA 91
NA
Sbjct: 195 QSNA 198
>sp|O86951|PRMA_THENE Ribosomal protein L11 methyltransferase OS=Thermotoga neapolitana
GN=prmA PE=3 SV=2
Length = 264
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H ++M + ++VV D GCG G L A LGA V+A+D+D ++E
Sbjct: 108 FGTGLHPTTQMSVLFLKKYLKKGDRVV-DVGCGTGILAIVAKKLGASYVLAVDVDEQAVE 166
Query: 86 LASENAADLELDIDFVQCDI 105
+A EN +D+ + D+
Sbjct: 167 VAKENVQKNSVDVTVKRSDL 186
>sp|A6WTE5|PRMA_SHEB8 Ribosomal protein L11 methyltransferase OS=Shewanella baltica
(strain OS185) GN=prmA PE=3 SV=1
Length = 293
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+SNK V DFGCG G L AA LGA V IDID +++
Sbjct: 137 FGTGTHPTTALCLEWLDSL-DLSNKEVIDFGCGSGILAVAALKLGAKNVTGIDIDYQAID 195
Query: 86 LASENA 91
+ NA
Sbjct: 196 ASRANA 201
>sp|B0BRD1|PRMA_ACTPJ Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) GN=prmA PE=3
SV=1
Length = 293
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D++ K V DFGCG G L AA LGA Q I IDID ++
Sbjct: 137 FGTGTHPTTALCLQWLDSL-DLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAI- 194
Query: 86 LASENAAD 93
LAS N A+
Sbjct: 195 LASGNNAE 202
>sp|B3GYL9|PRMA_ACTP7 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) GN=prmA PE=3
SV=1
Length = 293
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D++ K V DFGCG G L AA LGA Q I IDID ++
Sbjct: 137 FGTGTHPTTALCLQWLDSL-DLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAI- 194
Query: 86 LASENAAD 93
LAS N A+
Sbjct: 195 LASGNNAE 202
>sp|A3N2I5|PRMA_ACTP2 Ribosomal protein L11 methyltransferase OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) GN=prmA PE=3
SV=1
Length = 293
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D++ K V DFGCG G L AA LGA Q I IDID ++
Sbjct: 137 FGTGTHPTTALCLQWLDSL-DLTGKTVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAI- 194
Query: 86 LASENAAD 93
LAS N A+
Sbjct: 195 LASGNNAE 202
>sp|A5EVX5|PRMA_DICNV Ribosomal protein L11 methyltransferase OS=Dichelobacter nodosus
(strain VCS1703A) GN=prmA PE=3 SV=1
Length = 294
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H ++ M + + K V D+GCG G LG AA ++GA V DID +L
Sbjct: 139 FGTGTHPSTAMCLHYLVNHAALHGKTVYDYGCGSGILGIAAAMMGAKAVYQTDIDPQALT 198
Query: 86 LASENA 91
+ ENA
Sbjct: 199 ASYENA 204
>sp|A1AT86|PRMA_PELPD Ribosomal protein L11 methyltransferase OS=Pelobacter propionicus
(strain DSM 2379) GN=prmA PE=3 SV=1
Length = 309
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 26 YPTGPHIASRMLYTAENSFGD----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81
+ TG H +R+ D + V D G G G L AA LGA +V+A+DID
Sbjct: 144 FGTGGHETTRLCLELLEEIMDGMPILLTPAVLDLGTGSGILAMAAVRLGAGRVVAVDIDP 203
Query: 82 DSLELASENAADLELDIDFVQCDIRNLE 109
++E+A EN A +L D V+CD LE
Sbjct: 204 QAVEVARENLALNDL-TDQVECDTTPLE 230
>sp|Q3AF06|PRMA_CARHZ Ribosomal protein L11 methyltransferase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=prmA PE=3
SV=1
Length = 305
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H+ + ++ A + KVV D G G G L A+ LLGA+++ A+DID +++
Sbjct: 147 FGTGTHVTTALVLEALPKYVS-PGKVVVDVGTGSGILAIASALLGAEKIYALDIDPVAVK 205
Query: 86 LASENAA--DLELDIDFVQCDI 105
+A EN + LE I ++ D+
Sbjct: 206 VARENISINRLEDKITVIENDL 227
>sp|Q8EJR7|PRMA_SHEON Ribosomal protein L11 methyltransferase OS=Shewanella oneidensis
(strain MR-1) GN=prmA PE=3 SV=1
Length = 293
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+SN+ V DFGCG G L AA LGA +V IDID +++
Sbjct: 137 FGTGTHPTTALCLEWLDSL-DLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAID 195
Query: 86 LASENA 91
+ NA
Sbjct: 196 ASKANA 201
>sp|Q7VAM5|PRMA_PROMA Ribosomal protein L11 methyltransferase OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=prmA PE=3 SV=1
Length = 304
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H +R+ + KVV D GCG G LG AA LGA +V AIDIDS ++
Sbjct: 139 FGTGSHPTTRLCLEDLERNPPLGKKVV-DIGCGSGVLGIAAIKLGAKEVRAIDIDSLAVR 197
Query: 86 LASEN 90
SEN
Sbjct: 198 ATSEN 202
>sp|A1RFA3|PRMA_SHESW Ribosomal protein L11 methyltransferase OS=Shewanella sp. (strain
W3-18-1) GN=prmA PE=3 SV=1
Length = 293
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE 85
+ TG H + + +S D+SN+ V DFGCG G L AA LGA +V IDID +++
Sbjct: 137 FGTGTHPTTALCLEWLDSL-DLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAID 195
Query: 86 LASENA 91
+ NA
Sbjct: 196 ASRANA 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,153,305
Number of Sequences: 539616
Number of extensions: 1476375
Number of successful extensions: 6849
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 411
Number of HSP's that attempted gapping in prelim test: 6272
Number of HSP's gapped (non-prelim): 969
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)