Query 033605
Match_columns 115
No_of_seqs 130 out of 1124
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 04:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2263 Predicted RNA methylas 99.8 9.3E-20 2E-24 109.1 11.3 108 3-111 1-108 (198)
2 KOG3420 Predicted RNA methylas 99.8 6.7E-20 1.4E-24 105.4 6.6 112 1-112 1-112 (185)
3 COG2226 UbiE Methylase involve 99.8 3.1E-19 6.7E-24 111.7 8.7 107 5-115 12-120 (238)
4 PF01209 Ubie_methyltran: ubiE 99.7 1.4E-17 3E-22 104.7 8.1 104 5-112 8-114 (233)
5 TIGR00452 methyltransferase, p 99.7 2.2E-16 4.8E-21 102.9 11.2 111 3-113 75-188 (314)
6 PF12847 Methyltransf_18: Meth 99.7 1.2E-16 2.6E-21 90.1 8.6 66 48-113 1-70 (112)
7 TIGR00138 gidB 16S rRNA methyl 99.7 4.8E-16 1E-20 94.5 8.9 95 19-113 13-109 (181)
8 PF13847 Methyltransf_31: Meth 99.7 1.3E-15 2.9E-20 90.2 8.8 62 48-109 3-67 (152)
9 PRK00107 gidB 16S rRNA methylt 99.7 2.7E-15 5.8E-20 91.6 10.2 64 48-111 45-110 (187)
10 PRK15068 tRNA mo(5)U34 methylt 99.6 3.9E-15 8.5E-20 97.7 10.5 110 5-114 78-190 (322)
11 TIGR00477 tehB tellurite resis 99.6 1.3E-15 2.9E-20 93.6 7.0 73 40-113 22-94 (195)
12 COG2230 Cfa Cyclopropane fatty 99.6 7E-15 1.5E-19 93.9 10.3 82 29-110 53-136 (283)
13 PRK11207 tellurite resistance 99.6 5.3E-15 1.2E-19 91.1 9.2 69 45-114 27-96 (197)
14 PF03848 TehB: Tellurite resis 99.6 3.3E-15 7.2E-20 91.0 8.0 72 42-114 24-95 (192)
15 PLN02244 tocopherol O-methyltr 99.6 1.4E-14 3.1E-19 95.7 11.0 80 33-112 98-184 (340)
16 TIGR02752 MenG_heptapren 2-hep 99.6 9.2E-15 2E-19 91.9 8.5 74 39-112 36-112 (231)
17 PF02353 CMAS: Mycolic acid cy 99.6 2.4E-14 5.3E-19 91.9 8.8 81 30-110 44-126 (273)
18 PRK05785 hypothetical protein; 99.6 2.2E-14 4.7E-19 90.1 8.1 78 27-113 32-109 (226)
19 PRK00274 ksgA 16S ribosomal RN 99.6 3.2E-14 6.8E-19 91.6 8.7 76 34-112 28-103 (272)
20 PLN02396 hexaprenyldihydroxybe 99.6 3.7E-14 8E-19 92.9 9.0 64 48-112 131-196 (322)
21 smart00650 rADc Ribosomal RNA 99.5 5.3E-14 1.2E-18 84.8 8.6 73 38-112 3-75 (169)
22 PLN02233 ubiquinone biosynthes 99.5 1.2E-13 2.5E-18 88.5 10.3 71 43-113 68-144 (261)
23 PRK14896 ksgA 16S ribosomal RN 99.5 9.3E-14 2E-18 88.8 9.8 83 28-112 9-91 (258)
24 PRK14103 trans-aconitate 2-met 99.5 2.8E-14 6.1E-19 91.0 7.4 82 26-113 7-89 (255)
25 PTZ00098 phosphoethanolamine N 99.5 1.4E-13 2.9E-18 88.3 10.0 75 37-112 41-115 (263)
26 COG4106 Tam Trans-aconitate me 99.5 1.5E-14 3.3E-19 88.5 5.3 77 32-112 14-91 (257)
27 PRK01683 trans-aconitate 2-met 99.5 5.2E-14 1.1E-18 89.9 8.0 76 34-113 17-93 (258)
28 PRK12335 tellurite resistance 99.5 9E-14 1.9E-18 90.1 9.1 67 47-114 119-185 (287)
29 PRK11036 putative S-adenosyl-L 99.5 1.2E-13 2.7E-18 88.1 9.4 72 36-109 33-106 (255)
30 PRK15451 tRNA cmo(5)U34 methyl 99.5 2.2E-13 4.8E-18 86.6 10.4 66 47-112 55-125 (247)
31 KOG1540 Ubiquinone biosynthesi 99.5 1.1E-13 2.5E-18 86.6 8.6 78 38-115 90-178 (296)
32 PRK03522 rumB 23S rRNA methylu 99.5 8E-14 1.7E-18 91.4 8.4 82 27-109 152-234 (315)
33 PRK14966 unknown domain/N5-glu 99.5 1.2E-13 2.6E-18 92.6 9.3 81 26-108 231-312 (423)
34 PRK10258 biotin biosynthesis p 99.5 1.2E-13 2.7E-18 87.9 8.7 77 31-112 25-101 (251)
35 TIGR01177 conserved hypothetic 99.5 1.8E-13 4E-18 90.2 9.6 87 25-112 159-246 (329)
36 PF13649 Methyltransf_25: Meth 99.5 5E-14 1.1E-18 78.1 5.8 61 52-112 1-65 (101)
37 PRK08287 cobalt-precorrin-6Y C 99.5 4E-13 8.7E-18 82.1 10.1 66 41-106 24-91 (187)
38 TIGR02021 BchM-ChlM magnesium 99.5 3.4E-13 7.4E-18 84.3 10.0 63 46-109 53-117 (219)
39 PF06325 PrmA: Ribosomal prote 99.5 2.9E-13 6.3E-18 87.6 9.9 70 26-96 140-209 (295)
40 TIGR00080 pimt protein-L-isoas 99.5 4.4E-13 9.6E-18 83.6 10.4 75 34-108 63-140 (215)
41 PRK13942 protein-L-isoaspartat 99.5 4.3E-13 9.3E-18 83.5 10.2 77 33-109 61-140 (212)
42 COG2264 PrmA Ribosomal protein 99.5 1.6E-13 3.5E-18 88.3 8.4 71 26-97 141-211 (300)
43 PLN02490 MPBQ/MSBQ methyltrans 99.5 3.3E-13 7.2E-18 88.9 10.0 106 5-112 69-176 (340)
44 PF08241 Methyltransf_11: Meth 99.5 1.4E-13 2.9E-18 75.0 6.8 60 53-114 1-60 (95)
45 PTZ00338 dimethyladenosine tra 99.5 2.9E-13 6.4E-18 87.8 9.1 83 28-111 16-100 (294)
46 TIGR02469 CbiT precorrin-6Y C5 99.5 8.7E-13 1.9E-17 75.3 10.1 68 40-107 11-80 (124)
47 PRK13168 rumA 23S rRNA m(5)U19 99.5 2.7E-13 5.8E-18 92.5 9.1 80 27-107 276-356 (443)
48 PRK07402 precorrin-6B methylas 99.5 5.1E-13 1.1E-17 82.2 9.5 68 40-107 32-101 (196)
49 COG2227 UbiG 2-polyprenyl-3-me 99.5 9.3E-14 2E-18 86.4 6.1 64 47-111 58-121 (243)
50 TIGR00740 methyltransferase, p 99.5 8.1E-13 1.7E-17 83.6 10.5 66 47-112 52-122 (239)
51 TIGR00536 hemK_fam HemK family 99.5 6.1E-13 1.3E-17 86.1 10.0 80 28-107 93-176 (284)
52 TIGR03533 L3_gln_methyl protei 99.5 8.3E-13 1.8E-17 85.5 10.6 79 29-107 101-183 (284)
53 PRK01544 bifunctional N5-gluta 99.5 4.5E-13 9.7E-18 92.6 9.8 102 6-107 72-200 (506)
54 PRK13944 protein-L-isoaspartat 99.5 1.3E-12 2.8E-17 81.0 10.5 75 35-109 59-137 (205)
55 COG0030 KsgA Dimethyladenosine 99.5 6.5E-13 1.4E-17 84.1 9.2 85 26-112 8-92 (259)
56 PF05175 MTS: Methyltransferas 99.5 1.8E-12 3.9E-17 78.2 10.8 62 48-109 31-94 (170)
57 COG2890 HemK Methylase of poly 99.5 4.5E-13 9.7E-18 86.5 8.6 86 19-105 82-169 (280)
58 PRK11805 N5-glutamine S-adenos 99.5 8.7E-13 1.9E-17 86.2 9.9 79 29-107 113-195 (307)
59 PLN02336 phosphoethanolamine N 99.5 7.6E-13 1.7E-17 91.0 9.8 75 38-112 256-330 (475)
60 PRK00121 trmB tRNA (guanine-N( 99.5 3.8E-13 8.2E-18 83.2 7.5 62 48-109 40-104 (202)
61 TIGR00755 ksgA dimethyladenosi 99.5 9.9E-13 2.1E-17 83.9 9.6 78 32-111 13-90 (253)
62 TIGR03587 Pse_Me-ase pseudamin 99.5 8.6E-13 1.9E-17 81.7 8.8 61 47-112 42-103 (204)
63 PLN02585 magnesium protoporphy 99.4 1.2E-12 2.7E-17 85.6 9.4 60 48-108 144-209 (315)
64 TIGR03534 RF_mod_PrmC protein- 99.4 1.9E-12 4.1E-17 82.2 10.0 79 28-107 68-148 (251)
65 PRK14967 putative methyltransf 99.4 1E-12 2.2E-17 82.4 8.5 68 41-108 29-96 (223)
66 PRK10909 rsmD 16S rRNA m(2)G96 99.4 1.3E-12 2.9E-17 80.4 8.8 75 33-107 37-113 (199)
67 TIGR00537 hemK_rel_arch HemK-r 99.4 1.2E-12 2.6E-17 79.5 8.4 62 47-109 18-79 (179)
68 TIGR00406 prmA ribosomal prote 99.4 2.4E-12 5.2E-17 83.5 10.1 79 26-105 138-218 (288)
69 TIGR02085 meth_trns_rumB 23S r 99.4 1.1E-12 2.3E-17 87.9 8.6 82 26-108 211-293 (374)
70 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.3E-12 2.8E-17 81.4 8.3 63 47-110 33-108 (213)
71 TIGR00091 tRNA (guanine-N(7)-) 99.4 4.5E-13 9.7E-18 82.4 5.9 61 48-108 16-78 (194)
72 COG4123 Predicted O-methyltran 99.4 8E-13 1.7E-17 83.2 6.9 68 43-110 39-109 (248)
73 COG2265 TrmA SAM-dependent met 99.4 1.1E-12 2.4E-17 88.8 8.1 84 26-110 271-355 (432)
74 PF08003 Methyltransf_9: Prote 99.4 1.9E-12 4.2E-17 83.3 8.7 110 4-113 70-182 (315)
75 TIGR00479 rumA 23S rRNA (uraci 99.4 1.7E-12 3.7E-17 88.3 8.9 79 28-107 272-351 (431)
76 KOG1271 Methyltransferases [Ge 99.4 2.4E-12 5.1E-17 77.2 8.3 98 11-109 27-131 (227)
77 PRK09328 N5-glutamine S-adenos 99.4 4.2E-12 9E-17 81.7 10.0 81 27-107 87-169 (275)
78 COG2242 CobL Precorrin-6B meth 99.4 5.7E-12 1.2E-16 76.0 9.4 67 42-108 28-96 (187)
79 PF05958 tRNA_U5-meth_tr: tRNA 99.4 2.4E-12 5.2E-17 85.5 8.6 81 26-108 175-256 (352)
80 TIGR03704 PrmC_rel_meth putati 99.4 5.2E-12 1.1E-16 80.5 9.8 78 28-107 65-144 (251)
81 PRK00312 pcm protein-L-isoaspa 99.4 8.8E-12 1.9E-16 77.6 10.1 72 35-107 65-137 (212)
82 PRK14121 tRNA (guanine-N(7)-)- 99.4 3.6E-12 7.7E-17 85.1 8.7 68 41-108 115-184 (390)
83 PRK11705 cyclopropane fatty ac 99.4 7.1E-12 1.5E-16 84.1 10.2 74 33-108 152-225 (383)
84 COG2518 Pcm Protein-L-isoaspar 99.4 8.3E-12 1.8E-16 76.7 9.5 74 36-110 60-135 (209)
85 TIGR03438 probable methyltrans 99.4 4.1E-12 9E-17 82.9 8.6 65 48-112 63-132 (301)
86 PHA03412 putative methyltransf 99.4 3.6E-12 7.9E-17 79.8 7.9 84 20-113 27-114 (241)
87 PRK00216 ubiE ubiquinone/menaq 99.4 4.1E-12 9E-17 80.0 8.3 71 41-111 44-118 (239)
88 PRK00377 cbiT cobalt-precorrin 99.4 7.5E-12 1.6E-16 77.2 9.2 68 41-108 33-104 (198)
89 PF13659 Methyltransf_26: Meth 99.4 1.5E-12 3.3E-17 73.8 5.7 61 49-109 1-63 (117)
90 PF05401 NodS: Nodulation prot 99.4 7.9E-12 1.7E-16 76.0 8.8 70 43-114 38-107 (201)
91 PRK08317 hypothetical protein; 99.4 1.6E-11 3.6E-16 77.2 10.6 76 37-112 8-85 (241)
92 TIGR02143 trmA_only tRNA (urac 99.4 5.9E-12 1.3E-16 83.7 8.6 78 28-107 178-256 (353)
93 smart00828 PKS_MT Methyltransf 99.4 7.2E-12 1.6E-16 78.5 8.4 65 50-114 1-68 (224)
94 PRK13943 protein-L-isoaspartat 99.4 1.2E-11 2.6E-16 81.2 9.6 76 34-109 66-144 (322)
95 PRK15001 SAM-dependent 23S rib 99.4 9.5E-12 2.1E-16 83.1 9.2 70 38-107 218-292 (378)
96 TIGR00095 RNA methyltransferas 99.4 9.4E-12 2E-16 76.2 8.5 61 47-107 48-110 (189)
97 KOG0820 Ribosomal RNA adenine 99.3 1.5E-11 3.2E-16 77.9 9.3 78 33-111 43-122 (315)
98 PRK05031 tRNA (uracil-5-)-meth 99.3 7.4E-12 1.6E-16 83.5 8.5 79 27-107 186-265 (362)
99 PRK13255 thiopurine S-methyltr 99.3 7.7E-12 1.7E-16 78.2 8.1 63 47-110 36-111 (218)
100 PRK00517 prmA ribosomal protei 99.3 1E-11 2.2E-16 79.2 8.7 75 28-103 100-176 (250)
101 TIGR02072 BioC biotin biosynth 99.3 7E-12 1.5E-16 78.9 8.0 63 47-112 33-96 (240)
102 PRK11088 rrmA 23S rRNA methylt 99.3 1.7E-11 3.6E-16 79.0 9.8 61 48-112 85-149 (272)
103 PRK11873 arsM arsenite S-adeno 99.3 6.6E-12 1.4E-16 80.8 7.9 68 45-112 74-144 (272)
104 PRK04266 fibrillarin; Provisio 99.3 2.3E-11 5E-16 76.4 10.1 64 43-107 67-131 (226)
105 PRK07580 Mg-protoporphyrin IX 99.3 2.5E-11 5.4E-16 76.2 10.0 59 47-106 62-122 (230)
106 COG1041 Predicted DNA modifica 99.3 5.7E-12 1.2E-16 82.4 7.1 89 24-113 173-263 (347)
107 PRK09489 rsmC 16S ribosomal RN 99.3 1.9E-11 4.1E-16 81.0 9.4 67 41-107 189-256 (342)
108 PHA03411 putative methyltransf 99.3 1.2E-11 2.6E-16 79.0 8.1 80 24-113 46-126 (279)
109 PF01170 UPF0020: Putative RNA 99.3 3E-11 6.6E-16 73.4 9.5 87 26-112 6-104 (179)
110 PF01135 PCMT: Protein-L-isoas 99.3 2.2E-11 4.7E-16 75.6 8.9 74 33-106 57-133 (209)
111 PRK06922 hypothetical protein; 99.3 1.8E-11 3.8E-16 86.0 9.1 63 47-109 417-480 (677)
112 KOG1500 Protein arginine N-met 99.3 1.3E-11 2.9E-16 80.4 7.5 73 40-113 169-243 (517)
113 KOG2904 Predicted methyltransf 99.3 1.9E-11 4.1E-16 77.5 7.6 80 26-105 123-208 (328)
114 KOG1270 Methyltransferases [Co 99.3 1.5E-11 3.2E-16 77.5 6.9 60 49-109 90-156 (282)
115 PF00398 RrnaAD: Ribosomal RNA 99.3 4.5E-11 9.7E-16 76.7 9.2 85 26-112 8-92 (262)
116 KOG1499 Protein arginine N-met 99.3 1.8E-11 3.8E-16 79.9 7.3 71 40-111 52-124 (346)
117 PRK14968 putative methyltransf 99.3 6.6E-11 1.4E-15 72.1 9.5 60 47-107 22-84 (188)
118 TIGR02716 C20_methyl_CrtF C-20 99.3 6.2E-11 1.4E-15 77.5 9.6 75 37-112 138-215 (306)
119 PRK05134 bifunctional 3-demeth 99.3 6.4E-11 1.4E-15 74.6 9.2 79 30-109 30-108 (233)
120 PRK06202 hypothetical protein; 99.3 6.3E-11 1.4E-15 74.7 9.1 63 47-111 59-126 (232)
121 PRK15128 23S rRNA m(5)C1962 me 99.2 6.7E-11 1.5E-15 79.7 8.8 61 48-108 220-283 (396)
122 KOG2187 tRNA uracil-5-methyltr 99.2 2E-11 4.4E-16 82.9 6.2 81 26-107 361-442 (534)
123 PLN02336 phosphoethanolamine N 99.2 7.3E-11 1.6E-15 81.3 9.0 73 38-112 27-101 (475)
124 PRK14904 16S rRNA methyltransf 99.2 9E-11 2E-15 80.3 9.2 65 45-109 247-314 (445)
125 PRK14902 16S rRNA methyltransf 99.2 9.4E-11 2E-15 80.2 9.1 66 43-108 245-313 (444)
126 KOG1541 Predicted protein carb 99.2 5.4E-11 1.2E-15 73.4 7.0 75 33-112 33-110 (270)
127 PRK10901 16S rRNA methyltransf 99.2 1.1E-10 2.4E-15 79.5 9.2 67 43-109 239-306 (427)
128 PRK04148 hypothetical protein; 99.2 1.6E-10 3.6E-15 66.6 8.6 68 36-110 4-72 (134)
129 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 3.4E-10 7.3E-15 70.6 9.8 71 41-112 32-104 (223)
130 PLN02672 methionine S-methyltr 99.2 1.3E-10 2.9E-15 85.7 9.1 82 26-108 95-196 (1082)
131 PRK14903 16S rRNA methyltransf 99.2 1.5E-10 3.2E-15 78.9 8.8 66 44-109 233-301 (431)
132 PF09445 Methyltransf_15: RNA 99.2 5.6E-11 1.2E-15 70.8 5.8 58 50-108 1-60 (163)
133 PF07021 MetW: Methionine bios 99.2 1E-10 2.2E-15 71.0 7.0 61 48-114 13-75 (193)
134 PF03602 Cons_hypoth95: Conser 99.2 1.5E-10 3.3E-15 70.5 7.8 77 27-105 23-101 (183)
135 COG2813 RsmC 16S RNA G1207 met 99.2 2E-10 4.2E-15 74.1 8.5 69 37-105 147-217 (300)
136 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.4E-10 3E-15 83.2 8.5 60 48-107 538-600 (702)
137 PRK13256 thiopurine S-methyltr 99.2 1.7E-10 3.7E-15 72.2 7.7 76 33-110 29-117 (226)
138 PF02390 Methyltransf_4: Putat 99.2 1.7E-10 3.6E-15 71.0 7.5 58 50-107 19-78 (195)
139 TIGR01983 UbiG ubiquinone bios 99.2 2.3E-10 4.9E-15 71.7 8.2 63 48-111 45-108 (224)
140 PLN02781 Probable caffeoyl-CoA 99.2 1.3E-10 2.8E-15 73.4 7.0 62 47-108 67-132 (234)
141 PRK14901 16S rRNA methyltransf 99.2 3.7E-10 7.9E-15 77.1 9.1 68 42-109 246-316 (434)
142 TIGR02081 metW methionine bios 99.2 3.8E-10 8.2E-15 69.4 8.3 54 48-107 13-66 (194)
143 PRK00050 16S rRNA m(4)C1402 me 99.1 2.5E-10 5.4E-15 74.1 7.5 73 36-109 7-81 (296)
144 PLN03075 nicotianamine synthas 99.1 8.6E-10 1.9E-14 71.5 10.0 65 45-109 120-190 (296)
145 TIGR00446 nop2p NOL1/NOP2/sun 99.1 3.4E-10 7.4E-15 72.7 8.0 65 45-109 68-135 (264)
146 PF08242 Methyltransf_12: Meth 99.1 3.1E-12 6.8E-17 70.6 -1.3 51 53-103 1-53 (99)
147 PF05185 PRMT5: PRMT5 arginine 99.1 1.4E-09 3.1E-14 74.3 10.2 65 49-113 187-258 (448)
148 PRK11188 rrmJ 23S rRNA methylt 99.1 5.2E-10 1.1E-14 69.6 6.8 61 38-108 40-103 (209)
149 COG0220 Predicted S-adenosylme 99.1 6.3E-10 1.4E-14 69.8 6.9 60 48-107 48-109 (227)
150 PRK04457 spermidine synthase; 99.1 4.8E-10 1.1E-14 71.9 6.5 61 47-107 65-128 (262)
151 PF01596 Methyltransf_3: O-met 99.1 7.5E-10 1.6E-14 68.6 6.6 72 33-107 33-108 (205)
152 TIGR00478 tly hemolysin TlyA f 99.1 2.2E-09 4.9E-14 67.4 8.7 53 34-86 60-113 (228)
153 TIGR00563 rsmB ribosomal RNA s 99.1 2.1E-09 4.6E-14 73.3 9.1 69 41-109 231-302 (426)
154 smart00138 MeTrc Methyltransfe 99.0 1.9E-09 4.2E-14 69.3 8.0 65 47-111 98-200 (264)
155 KOG4300 Predicted methyltransf 99.0 1E-09 2.2E-14 67.3 6.2 63 47-109 75-139 (252)
156 PRK00811 spermidine synthase; 99.0 1.1E-09 2.4E-14 71.0 6.6 61 47-107 75-142 (283)
157 PRK11727 23S rRNA mA1618 methy 99.0 2.5E-09 5.3E-14 70.3 7.9 55 48-102 114-172 (321)
158 PF05724 TPMT: Thiopurine S-me 99.0 2.7E-09 5.9E-14 66.7 7.7 77 33-111 23-112 (218)
159 PRK04338 N(2),N(2)-dimethylgua 99.0 1.6E-09 3.5E-14 72.8 7.1 78 31-108 39-119 (382)
160 COG0742 N6-adenine-specific me 99.0 9.1E-09 2E-13 62.5 9.6 60 47-106 42-103 (187)
161 PLN02476 O-methyltransferase 99.0 3.2E-09 7E-14 68.4 8.1 61 47-107 117-181 (278)
162 PF02475 Met_10: Met-10+ like- 99.0 1.7E-09 3.7E-14 66.7 6.5 64 47-110 100-166 (200)
163 COG2519 GCD14 tRNA(1-methylade 99.0 4.8E-09 1E-13 66.1 8.5 77 36-112 82-162 (256)
164 PF13489 Methyltransf_23: Meth 99.0 2.5E-09 5.4E-14 63.5 6.8 40 46-86 20-59 (161)
165 cd02440 AdoMet_MTases S-adenos 99.0 3.3E-09 7.1E-14 57.9 6.7 59 51-109 1-60 (107)
166 PTZ00146 fibrillarin; Provisio 99.0 5E-09 1.1E-13 67.8 8.0 63 44-107 128-192 (293)
167 PF08123 DOT1: Histone methyla 99.0 1.1E-08 2.3E-13 63.5 9.0 82 28-109 22-114 (205)
168 COG0357 GidB Predicted S-adeno 99.0 5.3E-09 1.2E-13 65.0 7.5 107 5-112 23-133 (215)
169 PF08704 GCD14: tRNA methyltra 99.0 1.9E-08 4.1E-13 63.9 10.0 75 36-110 28-106 (247)
170 KOG2730 Methylase [General fun 98.9 2.2E-09 4.8E-14 66.3 5.3 76 28-107 77-154 (263)
171 TIGR01444 fkbM_fam methyltrans 98.9 5.5E-09 1.2E-13 61.1 6.3 57 51-107 1-59 (143)
172 TIGR00438 rrmJ cell division p 98.9 8.9E-09 1.9E-13 63.1 7.4 54 45-108 29-84 (188)
173 COG4122 Predicted O-methyltran 98.9 2.3E-08 4.9E-13 62.4 8.9 73 31-106 45-122 (219)
174 COG4976 Predicted methyltransf 98.9 1.3E-09 2.8E-14 67.9 3.3 51 40-91 117-167 (287)
175 COG2520 Predicted methyltransf 98.9 8.3E-09 1.8E-13 68.1 7.0 64 48-111 188-253 (341)
176 PF13679 Methyltransf_32: Meth 98.9 1.3E-08 2.9E-13 59.7 7.1 61 47-107 24-93 (141)
177 COG4076 Predicted RNA methylas 98.9 1.4E-08 3.1E-13 61.6 7.2 64 48-112 32-96 (252)
178 PF10294 Methyltransf_16: Puta 98.9 3E-08 6.4E-13 60.1 8.6 61 46-107 43-108 (173)
179 COG1092 Predicted SAM-dependen 98.9 1.4E-08 3E-13 68.3 7.0 78 28-107 199-279 (393)
180 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.7E-08 8E-13 71.0 9.5 84 28-111 169-298 (702)
181 COG0116 Predicted N6-adenine-s 98.8 4.3E-08 9.4E-13 65.3 9.1 89 23-111 166-296 (381)
182 PF03291 Pox_MCEL: mRNA cappin 98.8 1.5E-08 3.3E-13 67.0 7.0 63 48-110 62-135 (331)
183 PF02527 GidB: rRNA small subu 98.8 2.5E-08 5.5E-13 60.9 7.1 103 4-107 3-109 (184)
184 KOG3191 Predicted N6-DNA-methy 98.8 3.6E-08 7.8E-13 59.4 7.5 60 47-106 42-103 (209)
185 PLN02589 caffeoyl-CoA O-methyl 98.8 2.5E-08 5.5E-13 63.4 7.2 61 47-107 78-142 (247)
186 PF10672 Methyltrans_SAM: S-ad 98.8 4.8E-08 1E-12 63.3 8.4 74 32-107 109-185 (286)
187 PLN02366 spermidine synthase 98.8 2.2E-08 4.9E-13 65.6 6.9 61 47-107 90-156 (308)
188 TIGR00308 TRM1 tRNA(guanine-26 98.8 4.7E-08 1E-12 65.6 8.0 60 49-108 45-107 (374)
189 PRK03612 spermidine synthase; 98.8 2.4E-08 5.2E-13 69.7 6.5 61 47-107 296-365 (521)
190 PRK01581 speE spermidine synth 98.7 3.5E-08 7.6E-13 65.7 5.8 62 47-108 149-219 (374)
191 PF02384 N6_Mtase: N-6 DNA Met 98.7 1.4E-07 3.1E-12 61.9 8.6 85 21-109 23-118 (311)
192 TIGR02987 met_A_Alw26 type II 98.7 7.5E-08 1.6E-12 67.4 7.6 83 23-105 3-98 (524)
193 KOG2361 Predicted methyltransf 98.7 2.9E-08 6.3E-13 62.2 4.8 85 23-108 47-134 (264)
194 COG3963 Phospholipid N-methylt 98.7 4.3E-08 9.3E-13 58.4 5.1 66 40-109 40-107 (194)
195 TIGR00417 speE spermidine synt 98.7 1.3E-07 2.8E-12 61.1 7.2 60 47-106 71-136 (270)
196 KOG3010 Methyltransferase [Gen 98.7 5.9E-08 1.3E-12 60.9 4.8 42 51-93 36-77 (261)
197 KOG2899 Predicted methyltransf 98.6 9.9E-08 2.2E-12 60.0 5.1 48 47-94 57-105 (288)
198 PRK01544 bifunctional N5-gluta 98.6 1.9E-07 4E-12 65.1 6.7 59 48-106 347-407 (506)
199 PF00891 Methyltransf_2: O-met 98.6 8.1E-07 1.8E-11 56.4 9.1 68 38-112 90-158 (241)
200 COG3897 Predicted methyltransf 98.6 1.2E-07 2.6E-12 57.8 4.3 72 36-107 67-138 (218)
201 TIGR00006 S-adenosyl-methyltra 98.6 6.1E-07 1.3E-11 58.7 7.9 73 36-108 8-81 (305)
202 PRK11933 yebU rRNA (cytosine-C 98.6 7.8E-07 1.7E-11 61.4 8.6 64 45-108 110-176 (470)
203 PF12147 Methyltransf_20: Puta 98.5 3.2E-06 6.9E-11 54.7 9.3 62 47-108 134-200 (311)
204 KOG1975 mRNA cap methyltransfe 98.5 2.8E-07 6.2E-12 60.2 4.4 60 48-107 117-183 (389)
205 PF09243 Rsm22: Mitochondrial 98.5 1.1E-06 2.4E-11 56.9 7.1 69 27-95 12-82 (274)
206 PRK11524 putative methyltransf 98.4 1.8E-06 3.9E-11 56.2 7.5 59 33-93 194-252 (284)
207 PLN02823 spermine synthase 98.4 1.1E-06 2.5E-11 58.3 6.5 60 48-107 103-168 (336)
208 KOG4058 Uncharacterized conser 98.4 7.3E-07 1.6E-11 52.3 4.7 81 32-112 56-138 (199)
209 PF01555 N6_N4_Mtase: DNA meth 98.4 2.1E-06 4.5E-11 53.6 6.7 54 34-89 178-231 (231)
210 PF04816 DUF633: Family of unk 98.3 3.4E-06 7.4E-11 52.4 7.1 55 52-106 1-58 (205)
211 TIGR03439 methyl_EasF probable 98.3 6.3E-06 1.4E-10 54.4 8.5 71 35-107 65-143 (319)
212 PHA01634 hypothetical protein 98.3 2.1E-06 4.5E-11 49.1 5.4 48 48-95 28-75 (156)
213 PF11599 AviRa: RRNA methyltra 98.3 3.8E-06 8.3E-11 52.1 6.6 82 12-93 12-99 (246)
214 PRK11760 putative 23S rRNA C24 98.3 1.7E-05 3.8E-10 52.6 10.0 34 47-81 210-243 (357)
215 PF05891 Methyltransf_PK: AdoM 98.3 7.8E-06 1.7E-10 50.9 7.9 87 26-112 27-120 (218)
216 PRK13699 putative methylase; P 98.3 7.8E-06 1.7E-10 51.6 7.4 60 33-94 149-208 (227)
217 KOG2915 tRNA(1-methyladenosine 98.3 1.7E-05 3.7E-10 51.0 8.7 73 39-111 96-172 (314)
218 KOG1661 Protein-L-isoaspartate 98.2 1E-05 2.2E-10 50.1 7.2 77 31-109 67-157 (237)
219 PF01795 Methyltransf_5: MraW 98.2 4.3E-06 9.3E-11 54.8 5.9 74 36-109 8-82 (310)
220 PF05219 DREV: DREV methyltran 98.2 6E-06 1.3E-10 52.7 6.2 42 48-90 94-135 (265)
221 KOG1663 O-methyltransferase [S 98.2 1.5E-05 3.2E-10 50.0 6.9 62 45-106 70-135 (237)
222 PF01728 FtsJ: FtsJ-like methy 98.1 7.5E-06 1.6E-10 49.8 5.4 47 36-82 8-59 (181)
223 KOG0821 Predicted ribosomal RN 98.1 1.2E-05 2.5E-10 50.4 6.1 84 29-112 31-114 (326)
224 PF01564 Spermine_synth: Sperm 98.1 7.2E-06 1.6E-10 52.4 5.3 59 48-106 76-140 (246)
225 COG0144 Sun tRNA and rRNA cyto 98.1 3.4E-05 7.3E-10 51.8 8.5 67 43-109 151-221 (355)
226 COG2521 Predicted archaeal met 98.1 1.7E-06 3.7E-11 54.3 2.2 63 45-107 131-196 (287)
227 PF05971 Methyltransf_10: Prot 98.1 1.4E-05 2.9E-10 52.3 6.2 56 49-104 103-162 (299)
228 COG0421 SpeE Spermidine syntha 98.1 1.8E-05 3.8E-10 51.5 6.5 59 48-106 76-140 (282)
229 KOG1501 Arginine N-methyltrans 98.1 1.2E-05 2.6E-10 54.9 5.7 55 51-105 69-125 (636)
230 PRK10742 putative methyltransf 98.1 2.7E-05 5.8E-10 49.6 6.9 70 38-108 76-157 (250)
231 PF07091 FmrO: Ribosomal RNA m 98.0 3.2E-05 6.8E-10 49.2 6.8 64 48-111 105-169 (251)
232 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 8.2E-05 1.8E-09 48.6 8.9 64 45-108 82-148 (283)
233 COG0275 Predicted S-adenosylme 98.0 6E-05 1.3E-09 49.1 8.0 74 36-109 11-86 (314)
234 KOG2940 Predicted methyltransf 98.0 4.2E-05 9.1E-10 48.3 6.5 78 32-112 58-135 (325)
235 KOG3115 Methyltransferase-like 98.0 3.1E-05 6.6E-10 47.9 5.7 58 48-105 60-126 (249)
236 COG0293 FtsJ 23S rRNA methylas 98.0 2.1E-05 4.6E-10 48.7 4.8 70 30-109 26-98 (205)
237 PF06080 DUF938: Protein of un 97.9 9.4E-05 2E-09 45.9 7.5 57 51-107 28-87 (204)
238 COG1189 Predicted rRNA methyla 97.8 7.2E-05 1.6E-09 47.2 5.8 49 39-87 69-118 (245)
239 COG2384 Predicted SAM-dependen 97.8 0.00024 5.2E-09 44.4 7.2 58 48-105 16-76 (226)
240 PRK00536 speE spermidine synth 97.8 0.0001 2.2E-09 47.5 5.7 46 47-93 71-116 (262)
241 cd00315 Cyt_C5_DNA_methylase C 97.7 9.8E-05 2.1E-09 48.0 5.5 54 51-109 2-55 (275)
242 COG0500 SmtA SAM-dependent met 97.7 0.00028 6.1E-09 40.9 7.1 60 52-112 52-116 (257)
243 PF07757 AdoMet_MTase: Predict 97.7 6.4E-05 1.4E-09 41.8 3.8 51 33-84 43-93 (112)
244 PF01861 DUF43: Protein of unk 97.7 0.0014 2.9E-08 41.7 10.1 93 18-113 15-108 (243)
245 PF04989 CmcI: Cephalosporin h 97.6 0.00057 1.2E-08 42.5 6.8 62 48-109 32-98 (206)
246 PF01739 CheR: CheR methyltran 97.6 0.00039 8.4E-09 43.1 5.9 43 47-89 30-82 (196)
247 PLN02232 ubiquinone biosynthes 97.5 0.00014 3.1E-09 43.5 3.7 39 75-113 1-43 (160)
248 PF00145 DNA_methylase: C-5 cy 97.5 0.00046 9.9E-09 45.5 6.0 53 51-109 2-54 (335)
249 KOG1227 Putative methyltransfe 97.5 4.8E-05 1E-09 49.6 1.2 59 48-106 194-255 (351)
250 PF02636 Methyltransf_28: Puta 97.4 0.0011 2.5E-08 42.5 7.0 46 48-93 18-72 (252)
251 PF07942 N2227: N2227-like pro 97.4 0.00076 1.6E-08 43.7 5.7 43 48-91 56-98 (270)
252 KOG3987 Uncharacterized conser 97.3 3.3E-05 7.2E-10 48.0 -0.9 42 48-90 112-153 (288)
253 COG1889 NOP1 Fibrillarin-like 97.3 0.0025 5.4E-08 39.6 7.1 64 42-106 70-134 (231)
254 COG0286 HsdM Type I restrictio 97.3 0.00093 2E-08 46.9 5.9 83 23-109 165-254 (489)
255 PF01269 Fibrillarin: Fibrilla 97.3 0.0039 8.5E-08 39.3 8.0 64 43-107 68-133 (229)
256 KOG2671 Putative RNA methylase 97.3 0.0003 6.5E-09 46.8 3.0 84 28-112 188-281 (421)
257 PRK10458 DNA cytosine methylas 97.3 0.0029 6.3E-08 44.2 7.9 60 49-109 88-147 (467)
258 PF04672 Methyltransf_19: S-ad 97.2 0.0024 5.3E-08 41.3 6.9 73 35-107 54-132 (267)
259 KOG1709 Guanidinoacetate methy 97.2 0.0039 8.5E-08 39.2 7.4 62 47-108 100-161 (271)
260 COG1352 CheR Methylase of chem 97.2 0.0026 5.7E-08 41.3 6.6 42 48-89 96-147 (268)
261 COG4262 Predicted spermidine s 97.1 0.0017 3.7E-08 43.9 5.6 60 48-107 289-357 (508)
262 KOG2078 tRNA modification enzy 97.1 0.00032 7E-09 47.8 2.3 59 48-107 249-310 (495)
263 PF03059 NAS: Nicotianamine sy 97.1 0.0035 7.7E-08 40.8 6.4 62 48-109 120-187 (276)
264 KOG1269 SAM-dependent methyltr 97.0 0.00075 1.6E-08 45.6 3.3 68 47-114 109-178 (364)
265 KOG2352 Predicted spermine/spe 97.0 0.0066 1.4E-07 42.3 7.8 63 50-112 50-112 (482)
266 KOG4589 Cell division protein 97.0 0.0015 3.2E-08 40.2 4.2 34 47-80 68-103 (232)
267 TIGR00675 dcm DNA-methyltransf 97.0 0.0011 2.4E-08 44.0 4.1 53 52-109 1-53 (315)
268 PF05148 Methyltransf_8: Hypot 97.0 0.0026 5.7E-08 39.7 5.2 49 48-112 72-120 (219)
269 KOG2920 Predicted methyltransf 96.9 0.0016 3.6E-08 42.2 4.1 52 33-84 98-152 (282)
270 PF03141 Methyltransf_29: Puta 96.9 0.0016 3.5E-08 45.3 4.3 22 50-71 119-140 (506)
271 KOG1122 tRNA and rRNA cytosine 96.9 0.0052 1.1E-07 42.1 6.1 64 46-109 239-305 (460)
272 KOG2360 Proliferation-associat 96.9 0.0023 5.1E-08 43.2 4.5 70 45-114 210-282 (413)
273 KOG2651 rRNA adenine N-6-methy 96.9 0.0082 1.8E-07 40.8 6.9 41 49-89 154-194 (476)
274 COG0863 DNA modification methy 96.8 0.013 2.7E-07 38.4 7.8 58 35-94 210-267 (302)
275 COG1867 TRM1 N2,N2-dimethylgua 96.8 0.01 2.2E-07 40.1 7.1 57 49-105 53-111 (380)
276 KOG3045 Predicted RNA methylas 96.8 0.0044 9.6E-08 40.0 5.1 48 47-112 179-226 (325)
277 PRK10611 chemotaxis methyltran 96.8 0.0039 8.5E-08 40.9 5.0 43 48-90 115-166 (287)
278 KOG0024 Sorbitol dehydrogenase 96.7 0.0056 1.2E-07 40.7 5.3 45 45-89 166-212 (354)
279 PF13578 Methyltransf_24: Meth 96.7 0.0009 2E-08 37.1 1.5 54 53-107 1-60 (106)
280 PF05206 TRM13: Methyltransfer 96.6 0.023 5E-07 36.8 7.4 49 36-84 6-60 (259)
281 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.5 0.0036 7.8E-08 40.4 3.1 48 47-94 55-102 (256)
282 COG0270 Dcm Site-specific DNA 96.5 0.012 2.6E-07 39.4 5.7 45 49-93 3-47 (328)
283 PF02005 TRM: N2,N2-dimethylgu 96.5 0.014 2.9E-07 39.9 6.0 60 48-107 49-113 (377)
284 KOG1331 Predicted methyltransf 96.4 0.0031 6.8E-08 41.0 2.7 70 36-115 35-104 (293)
285 COG1565 Uncharacterized conser 96.4 0.037 8.1E-07 37.4 7.7 50 45-94 74-132 (370)
286 PF02086 MethyltransfD12: D12 96.4 0.0089 1.9E-07 38.3 4.8 56 36-92 8-63 (260)
287 KOG2198 tRNA cytosine-5-methyl 96.2 0.029 6.2E-07 38.0 6.3 65 45-109 152-222 (375)
288 KOG3178 Hydroxyindole-O-methyl 96.1 0.014 3.1E-07 39.0 4.5 55 50-108 179-233 (342)
289 COG1063 Tdh Threonine dehydrog 95.9 0.035 7.5E-07 37.5 5.9 46 47-92 167-214 (350)
290 PF05050 Methyltransf_21: Meth 95.7 0.057 1.2E-06 31.9 5.6 37 54-90 1-42 (167)
291 PF11899 DUF3419: Protein of u 95.6 0.073 1.6E-06 36.4 6.3 47 45-92 32-78 (380)
292 COG1568 Predicted methyltransf 95.6 0.028 6E-07 36.9 4.1 66 45-112 149-216 (354)
293 PF04445 SAM_MT: Putative SAM- 95.5 0.048 1E-06 34.8 4.9 58 50-108 77-144 (234)
294 KOG3201 Uncharacterized conser 95.4 0.011 2.3E-07 35.7 1.7 50 45-94 26-77 (201)
295 KOG3924 Putative protein methy 95.4 0.035 7.7E-07 37.9 4.3 78 30-107 174-262 (419)
296 KOG0022 Alcohol dehydrogenase, 95.2 0.087 1.9E-06 35.2 5.5 52 41-92 185-238 (375)
297 KOG2793 Putative N2,N2-dimethy 95.1 0.051 1.1E-06 35.0 4.3 37 48-84 86-122 (248)
298 COG3129 Predicted SAM-dependen 95.1 0.25 5.4E-06 31.8 7.1 48 48-95 78-126 (292)
299 COG4301 Uncharacterized conser 94.9 0.27 5.8E-06 32.0 7.0 60 47-106 77-143 (321)
300 PF11968 DUF3321: Putative met 94.8 0.087 1.9E-06 33.2 4.6 66 30-111 29-98 (219)
301 COG1062 AdhC Zn-dependent alco 94.8 0.15 3.3E-06 34.4 5.9 53 39-91 176-230 (366)
302 KOG1201 Hydroxysteroid 17-beta 94.8 0.29 6.2E-06 32.4 7.0 60 47-108 36-98 (300)
303 PRK09424 pntA NAD(P) transhydr 94.7 0.11 2.4E-06 37.0 5.4 44 47-90 163-207 (509)
304 KOG0822 Protein kinase inhibit 94.6 0.35 7.7E-06 34.7 7.5 79 33-111 349-436 (649)
305 PRK07904 short chain dehydroge 94.5 0.45 9.7E-06 30.5 7.4 60 48-108 7-72 (253)
306 PF02254 TrkA_N: TrkA-N domain 94.4 0.23 5E-06 27.7 5.4 46 57-108 4-52 (116)
307 COG5459 Predicted rRNA methyla 94.4 0.089 1.9E-06 35.8 4.1 57 36-92 101-159 (484)
308 PRK05867 short chain dehydroge 94.2 0.61 1.3E-05 29.6 7.6 60 48-108 8-70 (253)
309 COG3510 CmcI Cephalosporin hyd 94.1 0.27 5.9E-06 30.7 5.5 57 47-107 68-129 (237)
310 cd08283 FDH_like_1 Glutathione 93.9 0.22 4.9E-06 33.9 5.5 46 45-90 181-228 (386)
311 KOG1098 Putative SAM-dependent 93.8 0.2 4.3E-06 36.5 5.1 41 42-82 37-80 (780)
312 PRK07677 short chain dehydroge 93.8 0.84 1.8E-05 29.0 7.6 56 50-107 2-61 (252)
313 PF06962 rRNA_methylase: Putat 93.8 0.21 4.5E-06 29.4 4.4 36 73-108 1-38 (140)
314 PRK06172 short chain dehydroge 93.7 0.91 2E-05 28.8 7.8 58 48-107 6-67 (253)
315 COG1064 AdhP Zn-dependent alco 93.7 0.31 6.8E-06 32.9 5.7 49 44-92 162-211 (339)
316 PRK06124 gluconate 5-dehydroge 93.6 0.98 2.1E-05 28.7 7.8 58 48-107 10-71 (256)
317 COG5379 BtaA S-adenosylmethion 93.6 0.33 7.1E-06 32.4 5.5 45 47-92 62-106 (414)
318 PF12692 Methyltransf_17: S-ad 93.5 0.66 1.4E-05 27.7 6.2 46 34-80 15-61 (160)
319 PRK08339 short chain dehydroge 93.5 0.99 2.1E-05 29.0 7.7 60 48-108 7-70 (263)
320 PRK07063 short chain dehydroge 93.5 1 2.2E-05 28.7 7.8 59 48-108 6-70 (260)
321 PRK07035 short chain dehydroge 93.5 0.99 2.1E-05 28.6 7.6 60 48-108 7-69 (252)
322 PRK07097 gluconate 5-dehydroge 93.5 1 2.2E-05 28.9 7.7 60 48-108 9-71 (265)
323 PRK07890 short chain dehydroge 93.5 1.1 2.4E-05 28.4 7.8 58 48-107 4-65 (258)
324 PRK05876 short chain dehydroge 93.3 1.1 2.3E-05 29.1 7.7 59 48-108 5-67 (275)
325 cd00401 AdoHcyase S-adenosyl-L 93.2 0.65 1.4E-05 32.3 6.8 53 37-89 189-243 (413)
326 PRK09880 L-idonate 5-dehydroge 93.2 0.52 1.1E-05 31.5 6.2 46 45-90 166-213 (343)
327 PLN02668 indole-3-acetate carb 93.2 0.079 1.7E-06 36.3 2.3 20 48-67 63-82 (386)
328 PF00106 adh_short: short chai 93.2 0.81 1.8E-05 26.9 6.5 57 51-108 2-64 (167)
329 PRK06194 hypothetical protein; 93.1 1.2 2.5E-05 28.9 7.6 59 48-108 5-67 (287)
330 PTZ00357 methyltransferase; Pr 93.1 0.47 1E-05 35.4 6.0 62 50-111 702-778 (1072)
331 KOG2811 Uncharacterized conser 93.0 0.76 1.6E-05 31.5 6.6 44 50-93 184-231 (420)
332 KOG2912 Predicted DNA methylas 93.0 0.35 7.5E-06 32.6 4.9 52 52-103 106-160 (419)
333 PF03492 Methyltransf_7: SAM d 92.9 0.19 4E-06 33.9 3.8 24 45-68 13-36 (334)
334 PRK05866 short chain dehydroge 92.9 1.3 2.8E-05 29.1 7.7 59 48-108 39-101 (293)
335 PRK08862 short chain dehydroge 92.9 1.3 2.8E-05 28.0 7.4 59 48-107 4-65 (227)
336 PRK07478 short chain dehydroge 92.8 1.6 3.5E-05 27.7 7.9 59 48-108 5-67 (254)
337 PRK07109 short chain dehydroge 92.7 1.7 3.6E-05 29.2 8.1 59 48-108 7-69 (334)
338 PRK08217 fabG 3-ketoacyl-(acyl 92.6 1.6 3.5E-05 27.4 7.7 58 48-107 4-65 (253)
339 PRK07454 short chain dehydroge 92.6 1.5 3.3E-05 27.5 7.5 60 48-109 5-68 (241)
340 PRK08589 short chain dehydroge 92.5 1.6 3.4E-05 28.2 7.6 59 48-108 5-66 (272)
341 PRK06139 short chain dehydroge 92.3 1.7 3.6E-05 29.2 7.7 58 48-107 6-67 (330)
342 cd08237 ribitol-5-phosphate_DH 92.2 0.49 1.1E-05 31.7 5.1 43 47-89 162-207 (341)
343 PRK07814 short chain dehydroge 92.0 2.1 4.6E-05 27.4 7.8 59 48-108 9-71 (263)
344 PRK07523 gluconate 5-dehydroge 91.9 2.1 4.6E-05 27.2 7.6 59 48-108 9-71 (255)
345 PRK08213 gluconate 5-dehydroge 91.9 2.2 4.7E-05 27.2 7.7 59 48-108 11-73 (259)
346 PRK06113 7-alpha-hydroxysteroi 91.8 2.2 4.7E-05 27.1 7.7 59 48-108 10-72 (255)
347 PRK13394 3-hydroxybutyrate deh 91.8 2.2 4.8E-05 27.0 7.7 59 48-108 6-68 (262)
348 PRK08643 acetoin reductase; Va 91.8 2.2 4.8E-05 27.0 7.7 57 50-108 3-63 (256)
349 PRK08277 D-mannonate oxidoredu 91.7 2.4 5.1E-05 27.4 7.7 60 48-108 9-71 (278)
350 COG1748 LYS9 Saccharopine dehy 91.6 0.96 2.1E-05 31.3 5.9 56 50-108 2-59 (389)
351 PRK09072 short chain dehydroge 91.6 2.4 5.2E-05 27.1 7.8 58 48-108 4-65 (263)
352 PRK07062 short chain dehydroge 91.6 2.3 4.9E-05 27.2 7.5 60 48-108 7-71 (265)
353 PRK07326 short chain dehydroge 91.5 2.2 4.8E-05 26.6 7.5 57 48-107 5-65 (237)
354 PRK08303 short chain dehydroge 91.5 2.2 4.7E-05 28.3 7.4 60 48-108 7-79 (305)
355 PRK09242 tropinone reductase; 91.5 2.4 5.3E-05 26.9 7.5 58 48-107 8-71 (257)
356 PRK06125 short chain dehydroge 91.4 2.5 5.4E-05 26.9 7.7 58 48-107 6-68 (259)
357 PLN02740 Alcohol dehydrogenase 91.4 1 2.2E-05 30.7 6.0 46 44-89 194-241 (381)
358 KOG2352 Predicted spermine/spe 91.4 0.16 3.5E-06 35.7 2.1 46 48-93 295-341 (482)
359 KOG2798 Putative trehalase [Ca 91.3 0.37 7.9E-06 32.4 3.6 40 49-89 151-190 (369)
360 PRK07102 short chain dehydroge 91.3 2.1 4.5E-05 27.0 7.0 56 51-108 3-63 (243)
361 TIGR03206 benzo_BadH 2-hydroxy 91.2 2.5 5.5E-05 26.6 7.7 58 48-107 2-63 (250)
362 KOG2013 SMT3/SUMO-activating c 91.2 0.84 1.8E-05 32.5 5.3 67 48-114 11-100 (603)
363 PRK05650 short chain dehydroge 91.1 2.8 6E-05 26.9 7.6 56 51-108 2-61 (270)
364 PRK03562 glutathione-regulated 91.1 0.87 1.9E-05 33.4 5.7 55 49-109 400-455 (621)
365 PRK07024 short chain dehydroge 91.1 2.3 5.1E-05 27.1 7.2 55 50-107 3-61 (257)
366 PRK06949 short chain dehydroge 91.1 2.7 5.8E-05 26.6 7.6 58 48-107 8-69 (258)
367 PRK05854 short chain dehydroge 91.0 2.5 5.3E-05 28.1 7.4 59 48-108 13-77 (313)
368 PRK12939 short chain dehydroge 91.0 2.6 5.7E-05 26.5 7.8 59 48-108 6-68 (250)
369 TIGR03366 HpnZ_proposed putati 91.0 1.5 3.2E-05 28.5 6.3 46 45-90 117-164 (280)
370 TIGR02818 adh_III_F_hyde S-(hy 91.0 1.4 3E-05 29.9 6.3 47 44-90 181-229 (368)
371 PRK07791 short chain dehydroge 90.9 2.9 6.2E-05 27.3 7.6 59 48-107 5-75 (286)
372 PRK07576 short chain dehydroge 90.9 3 6.4E-05 26.8 7.7 58 48-107 8-69 (264)
373 PRK12826 3-ketoacyl-(acyl-carr 90.9 2.7 5.9E-05 26.4 8.0 58 48-107 5-66 (251)
374 PF03686 UPF0146: Uncharacteri 90.8 1.5 3.2E-05 25.4 5.3 34 48-82 13-47 (127)
375 TIGR02822 adh_fam_2 zinc-bindi 90.7 1.8 4E-05 28.8 6.6 47 44-90 161-208 (329)
376 cd05188 MDR Medium chain reduc 90.6 1.8 4E-05 27.3 6.3 44 47-90 133-177 (271)
377 KOG2782 Putative SAM dependent 90.5 0.55 1.2E-05 30.0 3.7 59 34-92 29-88 (303)
378 PRK10669 putative cation:proto 90.4 1.1 2.3E-05 32.4 5.6 51 50-108 418-471 (558)
379 cd08281 liver_ADH_like1 Zinc-d 90.4 1.5 3.3E-05 29.7 6.1 45 45-89 188-234 (371)
380 cd08254 hydroxyacyl_CoA_DH 6-h 90.3 1.7 3.8E-05 28.6 6.2 44 46-89 163-207 (338)
381 PRK08267 short chain dehydroge 90.3 3.2 7E-05 26.4 7.3 54 51-108 3-60 (260)
382 PF03721 UDPG_MGDP_dh_N: UDP-g 90.2 0.83 1.8E-05 28.1 4.3 22 67-89 20-41 (185)
383 TIGR03201 dearomat_had 6-hydro 90.2 2 4.3E-05 28.9 6.5 46 44-89 162-208 (349)
384 PRK09496 trkA potassium transp 90.1 2 4.3E-05 29.9 6.6 54 48-107 230-286 (453)
385 PRK08340 glucose-1-dehydrogena 90.0 3.2 6.9E-05 26.5 7.1 54 51-107 2-59 (259)
386 PRK07792 fabG 3-ketoacyl-(acyl 90.0 4 8.8E-05 26.9 7.7 59 48-107 11-73 (306)
387 PRK05786 fabG 3-ketoacyl-(acyl 89.7 3.5 7.5E-05 25.8 7.6 57 48-107 4-64 (238)
388 PRK07231 fabG 3-ketoacyl-(acyl 89.7 3.5 7.7E-05 25.9 7.7 57 48-107 4-64 (251)
389 PRK12481 2-deoxy-D-gluconate 3 89.7 3.7 7.9E-05 26.2 7.1 57 48-108 7-67 (251)
390 PRK08085 gluconate 5-dehydroge 89.7 3.7 8E-05 26.0 7.6 59 48-108 8-70 (254)
391 PRK06181 short chain dehydroge 89.3 4 8.7E-05 26.0 7.6 56 51-108 3-62 (263)
392 PRK06935 2-deoxy-D-gluconate 3 89.1 4.2 9E-05 25.9 8.0 59 48-108 14-75 (258)
393 PRK09291 short chain dehydroge 89.0 4.1 9E-05 25.8 7.4 56 50-107 3-62 (257)
394 TIGR00497 hsdM type I restrict 89.0 1.5 3.3E-05 31.3 5.4 45 48-92 217-266 (501)
395 cd08239 THR_DH_like L-threonin 89.0 2.6 5.6E-05 28.0 6.3 48 43-90 158-207 (339)
396 TIGR03451 mycoS_dep_FDH mycoth 88.9 2.2 4.8E-05 28.7 6.0 45 45-89 173-219 (358)
397 PRK07453 protochlorophyllide o 88.8 5.1 0.00011 26.6 7.8 59 48-108 5-67 (322)
398 COG1743 Adenine-specific DNA m 88.6 0.92 2E-05 34.1 4.1 45 47-92 89-133 (875)
399 PLN02780 ketoreductase/ oxidor 88.6 3.9 8.6E-05 27.3 6.9 58 48-106 52-114 (320)
400 PRK06200 2,3-dihydroxy-2,3-dih 88.6 4.7 0.0001 25.8 7.2 55 48-107 5-63 (263)
401 PF00107 ADH_zinc_N: Zinc-bind 88.5 0.65 1.4E-05 26.3 2.9 34 58-91 1-34 (130)
402 PRK03659 glutathione-regulated 88.5 1.7 3.8E-05 31.7 5.5 52 50-109 401-455 (601)
403 PRK06701 short chain dehydroge 88.4 5.2 0.00011 26.2 7.6 59 48-108 45-108 (290)
404 PRK12829 short chain dehydroge 88.4 4.7 0.0001 25.6 8.1 57 47-107 9-69 (264)
405 PRK06197 short chain dehydroge 88.1 5.6 0.00012 26.1 7.4 60 48-109 15-80 (306)
406 PRK07666 fabG 3-ketoacyl-(acyl 88.0 4.8 0.0001 25.2 7.7 59 48-108 6-68 (239)
407 PRK08251 short chain dehydroge 87.8 5 0.00011 25.2 7.4 57 50-108 3-65 (248)
408 cd08301 alcohol_DH_plants Plan 87.8 3.4 7.3E-05 28.0 6.3 46 44-89 183-230 (369)
409 cd08300 alcohol_DH_class_III c 87.7 3.6 7.9E-05 27.8 6.4 45 45-89 183-229 (368)
410 cd08230 glucose_DH Glucose deh 87.6 3.8 8.3E-05 27.5 6.5 43 47-89 171-217 (355)
411 PRK08703 short chain dehydroge 87.6 5.1 0.00011 25.1 7.3 57 48-106 5-66 (239)
412 COG1255 Uncharacterized protei 87.6 1.1 2.4E-05 25.6 3.2 34 48-82 13-47 (129)
413 PRK08265 short chain dehydroge 87.6 5.5 0.00012 25.5 7.5 56 48-108 5-64 (261)
414 PRK05855 short chain dehydroge 87.6 5.7 0.00012 28.4 7.6 59 48-108 314-376 (582)
415 TIGR00561 pntA NAD(P) transhyd 87.6 2.2 4.8E-05 30.6 5.4 43 47-89 162-205 (511)
416 PRK12429 3-hydroxybutyrate deh 87.5 5.3 0.00011 25.2 7.7 59 48-107 3-64 (258)
417 PRK06720 hypothetical protein; 87.4 4.6 0.0001 24.4 7.8 59 48-107 15-76 (169)
418 PRK07201 short chain dehydroge 87.3 6.8 0.00015 28.7 7.9 59 48-108 370-432 (657)
419 PLN02827 Alcohol dehydrogenase 87.2 3.9 8.4E-05 27.9 6.4 45 45-89 190-236 (378)
420 cd05213 NAD_bind_Glutamyl_tRNA 87.2 6.1 0.00013 26.4 7.1 54 33-86 162-217 (311)
421 PF07101 DUF1363: Protein of u 87.1 0.22 4.9E-06 27.2 0.3 15 51-65 5-19 (124)
422 TIGR02415 23BDH acetoin reduct 87.1 5.7 0.00012 25.1 7.5 55 51-107 2-60 (254)
423 PRK12548 shikimate 5-dehydroge 87.0 6.8 0.00015 25.9 8.5 34 47-81 124-160 (289)
424 PRK05476 S-adenosyl-L-homocyst 86.7 5.8 0.00013 27.9 7.0 41 47-87 210-251 (425)
425 PF03514 GRAS: GRAS domain fam 86.7 5.6 0.00012 27.4 6.8 63 40-102 102-180 (374)
426 PRK06138 short chain dehydroge 86.6 6 0.00013 24.9 7.6 58 48-108 4-65 (252)
427 PRK08945 putative oxoacyl-(acy 86.6 6.1 0.00013 24.9 7.3 57 48-106 11-72 (247)
428 COG0338 Dam Site-specific DNA 86.4 0.42 9.1E-06 31.4 1.3 52 34-89 13-64 (274)
429 PF12242 Eno-Rase_NADH_b: NAD( 86.3 3.4 7.4E-05 21.8 5.7 46 36-81 26-74 (78)
430 PRK06914 short chain dehydroge 86.1 7 0.00015 25.2 7.7 58 49-108 3-66 (280)
431 KOG1596 Fibrillarin and relate 86.1 2.3 5E-05 27.7 4.4 47 45-91 153-205 (317)
432 TIGR00936 ahcY adenosylhomocys 86.1 2.7 5.9E-05 29.3 5.1 42 47-88 193-235 (406)
433 PLN02253 xanthoxin dehydrogena 86.1 7.1 0.00015 25.2 7.6 58 48-108 17-78 (280)
434 PRK12823 benD 1,6-dihydroxycyc 85.7 7.1 0.00015 24.8 7.6 59 48-108 7-68 (260)
435 COG0569 TrkA K+ transport syst 85.6 6 0.00013 25.2 6.2 52 51-107 2-55 (225)
436 PRK08628 short chain dehydroge 85.6 7.1 0.00015 24.8 7.3 57 48-107 6-66 (258)
437 KOG1562 Spermidine synthase [A 85.4 1.7 3.7E-05 29.1 3.7 60 46-105 119-184 (337)
438 TIGR01202 bchC 2-desacetyl-2-h 85.3 2.2 4.8E-05 28.1 4.4 42 48-89 144-187 (308)
439 PF07279 DUF1442: Protein of u 85.2 7.5 0.00016 24.8 8.4 61 45-105 38-105 (218)
440 PF02737 3HCDH_N: 3-hydroxyacy 85.2 3.1 6.8E-05 25.4 4.7 41 52-93 2-44 (180)
441 cd08277 liver_alcohol_DH_like 85.2 5.4 0.00012 27.0 6.2 45 45-89 181-227 (365)
442 PRK05872 short chain dehydroge 85.0 8.6 0.00019 25.2 7.6 57 48-107 8-68 (296)
443 PRK07774 short chain dehydroge 84.8 7.6 0.00017 24.4 7.8 59 48-108 5-67 (250)
444 COG4017 Uncharacterized protei 84.7 5 0.00011 25.3 5.3 45 45-90 41-86 (254)
445 TIGR01963 PHB_DH 3-hydroxybuty 84.6 7.8 0.00017 24.4 7.5 56 51-108 3-62 (255)
446 PRK06153 hypothetical protein; 84.5 2 4.2E-05 29.8 3.8 33 48-80 175-209 (393)
447 PRK08415 enoyl-(acyl carrier p 84.4 9 0.00019 24.9 7.0 59 48-108 4-67 (274)
448 cd08255 2-desacetyl-2-hydroxye 84.4 3.7 8.1E-05 26.3 5.0 46 45-90 94-141 (277)
449 KOG1099 SAM-dependent methyltr 84.4 1.7 3.8E-05 28.0 3.3 55 50-104 43-122 (294)
450 PRK08278 short chain dehydroge 84.4 8.8 0.00019 24.8 7.3 59 48-108 5-74 (273)
451 PRK06198 short chain dehydroge 84.2 8.4 0.00018 24.4 7.9 59 48-107 5-67 (260)
452 PRK05599 hypothetical protein; 84.1 8.5 0.00018 24.4 6.9 36 72-107 24-60 (246)
453 PRK09496 trkA potassium transp 83.9 6 0.00013 27.6 6.2 50 51-107 2-54 (453)
454 PRK00045 hemA glutamyl-tRNA re 83.9 11 0.00023 26.5 7.3 51 36-86 169-221 (423)
455 TIGR00027 mthyl_TIGR00027 meth 83.9 9.6 0.00021 24.9 7.1 72 33-106 66-142 (260)
456 PRK07831 short chain dehydroge 83.8 9 0.00019 24.4 7.4 59 48-107 16-80 (262)
457 PRK07775 short chain dehydroge 83.7 9.4 0.0002 24.6 7.9 59 48-108 9-71 (274)
458 PRK08993 2-deoxy-D-gluconate 3 83.6 9 0.0002 24.3 7.2 56 48-107 9-68 (253)
459 TIGR01035 hemA glutamyl-tRNA r 83.5 12 0.00026 26.2 7.4 49 37-85 168-218 (417)
460 TIGR01832 kduD 2-deoxy-D-gluco 83.5 8.8 0.00019 24.1 7.4 57 48-108 4-64 (248)
461 cd01075 NAD_bind_Leu_Phe_Val_D 83.5 8.5 0.00019 24.0 6.4 41 47-90 26-70 (200)
462 PRK06940 short chain dehydroge 83.4 9.8 0.00021 24.6 7.5 56 51-108 4-61 (275)
463 cd08245 CAD Cinnamyl alcohol d 83.4 6.7 0.00015 25.9 6.0 46 44-89 158-204 (330)
464 KOG1205 Predicted dehydrogenas 83.1 3.3 7.1E-05 27.5 4.3 62 48-110 11-77 (282)
465 TIGR02825 B4_12hDH leukotriene 83.1 8.5 0.00018 25.5 6.4 47 43-89 133-181 (325)
466 PRK05717 oxidoreductase; Valid 83.1 9.5 0.00021 24.2 7.5 56 47-107 8-67 (255)
467 PLN03154 putative allyl alcoho 83.0 7.6 0.00016 26.2 6.2 44 45-88 155-200 (348)
468 TIGR03325 BphB_TodD cis-2,3-di 82.9 9.9 0.00021 24.3 7.1 55 48-107 4-62 (262)
469 TIGR00518 alaDH alanine dehydr 82.8 5.5 0.00012 27.4 5.5 43 48-90 166-209 (370)
470 PRK06196 oxidoreductase; Provi 82.8 11 0.00025 24.9 7.2 55 48-108 25-83 (315)
471 cd08238 sorbose_phosphate_red 82.7 4.6 9.9E-05 27.9 5.2 45 46-90 173-222 (410)
472 PRK09186 flagellin modificatio 82.4 10 0.00022 24.0 7.6 58 48-107 3-66 (256)
473 TIGR00571 dam DNA adenine meth 82.3 5.3 0.00011 26.1 5.1 50 36-89 14-63 (266)
474 cd08232 idonate-5-DH L-idonate 82.3 7.6 0.00016 25.8 6.0 43 47-89 164-208 (339)
475 TIGR01289 LPOR light-dependent 82.2 12 0.00026 24.8 7.7 59 50-108 4-65 (314)
476 COG2933 Predicted SAM-dependen 82.0 1.8 3.9E-05 28.6 2.8 37 46-83 209-245 (358)
477 PRK12384 sorbitol-6-phosphate 81.9 11 0.00023 24.0 7.4 56 50-107 3-64 (259)
478 KOG1253 tRNA methyltransferase 81.9 0.61 1.3E-05 33.1 0.7 59 47-105 108-170 (525)
479 PRK12475 thiamine/molybdopteri 81.7 9.7 0.00021 25.9 6.3 34 48-81 23-58 (338)
480 PRK08594 enoyl-(acyl carrier p 81.6 11 0.00024 24.1 6.4 58 48-108 6-71 (257)
481 PRK07067 sorbitol dehydrogenas 81.6 11 0.00024 23.9 7.5 55 48-107 5-63 (257)
482 PF04072 LCM: Leucine carboxyl 81.6 9.7 0.00021 23.3 5.9 59 50-109 80-143 (183)
483 COG1004 Ugd Predicted UDP-gluc 81.5 3.9 8.5E-05 28.5 4.3 23 66-89 19-41 (414)
484 PF01488 Shikimate_DH: Shikima 81.3 8.2 0.00018 22.3 6.8 47 45-91 8-56 (135)
485 PRK05653 fabG 3-ketoacyl-(acyl 81.2 11 0.00023 23.5 7.6 58 48-107 4-65 (246)
486 PRK06180 short chain dehydroge 80.9 12 0.00027 24.1 7.1 54 49-107 4-61 (277)
487 cd08294 leukotriene_B4_DH_like 80.7 9.8 0.00021 25.0 6.0 45 45-89 140-186 (329)
488 cd00757 ThiF_MoeB_HesA_family 80.7 9.7 0.00021 24.2 5.8 32 48-79 20-53 (228)
489 PLN02989 cinnamyl-alcohol dehy 80.6 14 0.0003 24.5 7.0 61 48-109 4-69 (325)
490 PRK08324 short chain dehydroge 80.5 13 0.00028 27.8 7.0 57 48-107 421-481 (681)
491 PLN02494 adenosylhomocysteinas 80.5 11 0.00023 27.1 6.3 51 37-87 241-293 (477)
492 PRK07806 short chain dehydroge 80.1 12 0.00027 23.5 8.2 59 48-108 5-68 (248)
493 TIGR02819 fdhA_non_GSH formald 80.0 10 0.00023 26.2 6.1 46 45-90 182-229 (393)
494 KOG2539 Mitochondrial/chloropl 79.6 1.7 3.6E-05 30.8 2.2 64 30-93 182-248 (491)
495 PRK07688 thiamine/molybdopteri 79.6 12 0.00027 25.4 6.2 33 48-80 23-57 (339)
496 PRK12549 shikimate 5-dehydroge 79.4 15 0.00033 24.2 8.1 45 47-91 125-171 (284)
497 PRK07825 short chain dehydroge 79.3 14 0.0003 23.7 7.2 54 48-107 4-61 (273)
498 PF05575 V_cholerae_RfbT: Vibr 79.1 3 6.5E-05 25.6 2.9 57 36-94 69-126 (286)
499 KOG0725 Reductases with broad 79.0 15 0.00034 24.0 7.5 62 47-109 6-73 (270)
500 PRK07074 short chain dehydroge 78.9 14 0.0003 23.4 7.7 55 50-108 3-61 (257)
No 1
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=9.3e-20 Score=109.10 Aligned_cols=108 Identities=43% Similarity=0.672 Sum_probs=96.5
Q ss_pred cchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh
Q 033605 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD 82 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~ 82 (115)
++.++..++.+..|.++...++||.++...+..++..+. ......+.+|+|+|||||.+++..+-.++..|+|+|++++
T Consensus 1 kk~Le~~l~kl~~f~~p~~~LEQY~Tp~~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~ 79 (198)
T COG2263 1 KKELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE 79 (198)
T ss_pred CchhhhhhhhhcCCCCCCccceecCCChHHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH
Confidence 467888899999999999999999999999999887776 3356688899999999999999999899899999999999
Q ss_pred HHHHHHHHhhccCCceeEEEccccCCccc
Q 033605 83 SLELASENAADLELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 83 ~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (115)
+++.+++|..+...++.++..|+.++..+
T Consensus 80 a~ei~r~N~~~l~g~v~f~~~dv~~~~~~ 108 (198)
T COG2263 80 ALEIARANAEELLGDVEFVVADVSDFRGK 108 (198)
T ss_pred HHHHHHHHHHhhCCceEEEEcchhhcCCc
Confidence 99999999998666999999999887643
No 2
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=6.7e-20 Score=105.43 Aligned_cols=112 Identities=48% Similarity=0.903 Sum_probs=103.8
Q ss_pred CccchhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCC
Q 033605 1 MKLKQLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDID 80 (115)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s 80 (115)
|+.+.+++.++....|.++...+++|+++++.+..++.-+-+.+....+++++|+|||.|.++...+..+...|+|+||+
T Consensus 1 m~~Kel~~~L~~v~gFeKpk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId 80 (185)
T KOG3420|consen 1 MRLKELESRLQQVDGFEKPKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID 80 (185)
T ss_pred CchHHHHHHHHHhccccccchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC
Confidence 78888999999999999999999999999999999999999998888999999999999999988877777799999999
Q ss_pred hhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 81 SDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 81 ~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
|++++.+..|+.+..++++++++|+.++.+..
T Consensus 81 peALEIf~rNaeEfEvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 81 PEALEIFTRNAEEFEVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHHHHhhchHHhhhhhheeeeeccchhccC
Confidence 99999999999999889999999998877654
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.80 E-value=3.1e-19 Score=111.69 Aligned_cols=107 Identities=19% Similarity=0.318 Sum_probs=82.3
Q ss_pred hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhH
Q 033605 5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDS 83 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~ 83 (115)
.++...++....++.....-.+..+..|...++..+. ..++.+|||+|||||..+..+++ .+..+|+|+|+|+.|
T Consensus 12 ~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~----~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M 87 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG----IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM 87 (238)
T ss_pred HHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC----CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH
Confidence 4444455544444444444455666666666665543 33889999999999999999996 456799999999999
Q ss_pred HHHHHHHhhccCC-ceeEEEccccCCcccCCCC
Q 033605 84 LELASENAADLEL-DIDFVQCDIRNLEWRGKYI 115 (115)
Q Consensus 84 ~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f~ 115 (115)
++.++++....+. +++++++|++++||++..|
T Consensus 88 L~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sF 120 (238)
T COG2226 88 LEVAREKLKKKGVQNVEFVVGDAENLPFPDNSF 120 (238)
T ss_pred HHHHHHHhhccCccceEEEEechhhCCCCCCcc
Confidence 9999999998776 7999999999999999655
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.74 E-value=1.4e-17 Score=104.71 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=53.7
Q ss_pred hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChh
Q 033605 5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSD 82 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~ 82 (115)
.++...+.+...++.....-.+..+..+....++.+ ...++.+|||+|||+|.++..+++. + ..+|+|+|+|+.
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp -----------------------------SHHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 444455555444443333334444555555555433 3447889999999999999999864 3 369999999999
Q ss_pred HHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605 83 SLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 83 ~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 112 (115)
|++.++++....+. +++++++|++++|+++
T Consensus 84 ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 84 MLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp HHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 99999999988766 9999999999999986
No 5
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.71 E-value=2.2e-16 Score=102.90 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=88.2
Q ss_pred cchhhhhhhhcccCCCCccccccCCCchhhHHHHH-HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh
Q 033605 3 LKQLESVLGDLEQFSNPKVELEQYPTGPHIASRML-YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~ 81 (115)
+++++..++.+..|.++...+++|.++.++...+. ..++..+...++++|||+|||+|.++..++..+...|+|+|+|+
T Consensus 75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~ 154 (314)
T TIGR00452 75 IKRILEEIMALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV 154 (314)
T ss_pred HHHHHHHHHhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH
Confidence 45788888999999999999999999998877765 44666666678899999999999999998877766899999999
Q ss_pred hHHHHHHHHhhc--cCCceeEEEccccCCcccCC
Q 033605 82 DSLELASENAAD--LELDIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 82 ~~~~~a~~~~~~--~~~~v~~~~~d~~~~~~~~~ 113 (115)
.|+..++..... ...++.+..+++++++..+.
T Consensus 155 ~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 155 LFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 999775443222 12268888899888876544
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.71 E-value=1.2e-16 Score=90.05 Aligned_cols=66 Identities=35% Similarity=0.536 Sum_probs=55.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc-cCCcccCC
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI-RNLEWRGK 113 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~-~~~~~~~~ 113 (115)
++.+|||+|||+|.++..+++ .+..+|+|+|+|+.+++.++++....+. +++++++|+ ...+..++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEP 70 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCC
Confidence 467999999999999999997 5677999999999999999999954443 999999999 55555443
No 7
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=4.8e-16 Score=94.51 Aligned_cols=95 Identities=17% Similarity=0.281 Sum_probs=68.6
Q ss_pred CccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-
Q 033605 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL- 96 (115)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~- 96 (115)
+..+..+..++.....+.+...+......++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.++++....+.
T Consensus 13 ~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~ 92 (181)
T TIGR00138 13 KRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN 92 (181)
T ss_pred hcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence 455555555544443333322222223335889999999999999998854 346899999999999999999888776
Q ss_pred ceeEEEccccCCcccCC
Q 033605 97 DIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 97 ~v~~~~~d~~~~~~~~~ 113 (115)
+++++++|+++++..+.
T Consensus 93 ~i~~i~~d~~~~~~~~~ 109 (181)
T TIGR00138 93 NVEIVNGRAEDFQHEEQ 109 (181)
T ss_pred CeEEEecchhhccccCC
Confidence 79999999988754433
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.66 E-value=1.3e-15 Score=90.24 Aligned_cols=62 Identities=39% Similarity=0.668 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCChHHHHHH-hc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGTLGAAAT-LL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~-~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
++.+|||+|||+|.++..++ +. +..+++|+|+|+.|++.|++++...+. ++++.++|+++++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~ 67 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLP 67 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccc
Confidence 67899999999999999999 43 457999999999999999999888877 8999999999977
No 9
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.65 E-value=2.7e-15 Score=91.59 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~ 111 (115)
++.+|||+|||+|..+..++. .+..+|+++|+++.|++.++++....+. +++++++|+++++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~ 110 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQE 110 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCC
Confidence 478999999999999999885 4567999999999999999999988887 799999999887763
No 10
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.64 E-value=3.9e-15 Score=97.69 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=78.3
Q ss_pred hhhhhhhhcccCCCCccccccCCCchhhHH-HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhH
Q 033605 5 QLESVLGDLEQFSNPKVELEQYPTGPHIAS-RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~ 83 (115)
.++.....+..|.........+....++.. ...+.+...++..++.+|||+|||+|.++..++..+...|+|+|+|+.+
T Consensus 78 ~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~ 157 (322)
T PRK15068 78 RIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLF 157 (322)
T ss_pred HHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHH
Confidence 455555666666666555555555544433 3344555666656788999999999999999998777689999999999
Q ss_pred HHHHHHHhhcc--CCceeEEEccccCCcccCCC
Q 033605 84 LELASENAADL--ELDIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 84 ~~~a~~~~~~~--~~~v~~~~~d~~~~~~~~~f 114 (115)
+..++...... ..++.++.+|++++|+++.|
T Consensus 158 l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 158 LCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 97665443322 23799999999999875443
No 11
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=1.3e-15 Score=93.62 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=58.7
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCC
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (115)
+.+.+...++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....+.++.+...|+...++++.
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNED 94 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCC
Confidence 33344445678999999999999999998754 99999999999999999887766677888888876665543
No 12
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=7e-15 Score=93.89 Aligned_cols=82 Identities=21% Similarity=0.250 Sum_probs=71.3
Q ss_pred chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (115)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (115)
-.+.....++.+.+.+...++++|||||||+|.+++.+++.-..+|+|+++|+++.+.+++++.+.++ +++++..|..
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r 132 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR 132 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc
Confidence 34556667888889989999999999999999999999975456999999999999999999999888 7999999988
Q ss_pred CCcc
Q 033605 107 NLEW 110 (115)
Q Consensus 107 ~~~~ 110 (115)
+++-
T Consensus 133 d~~e 136 (283)
T COG2230 133 DFEE 136 (283)
T ss_pred cccc
Confidence 7653
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.62 E-value=5.3e-15 Score=91.12 Aligned_cols=69 Identities=26% Similarity=0.336 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCCC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f 114 (115)
...++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....+. ++++...|+.++++++.|
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 344678999999999999999998754 999999999999999998887776 689999999888776543
No 14
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.62 E-value=3.3e-15 Score=91.01 Aligned_cols=72 Identities=25% Similarity=0.352 Sum_probs=58.3
Q ss_pred HhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605 42 NSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 114 (115)
+..+..++.++||+|||.|+.++++++.|. .|+++|+|+..++.+++.+...+++++..+.|+.+.+++..|
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 334556788999999999999999999977 899999999999999998888888999999999988887653
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=1.4e-14 Score=95.73 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCC-----CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 33 ASRMLYTAENSFGD-----VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 33 ~~~~~~~~~~~~~~-----~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
..++++.++..... .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....+. +++++++|+
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc
Confidence 44566667766654 56789999999999999999975355999999999999999998877665 799999999
Q ss_pred cCCcccC
Q 033605 106 RNLEWRG 112 (115)
Q Consensus 106 ~~~~~~~ 112 (115)
.++|+++
T Consensus 178 ~~~~~~~ 184 (340)
T PLN02244 178 LNQPFED 184 (340)
T ss_pred ccCCCCC
Confidence 9998875
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=9.2e-15 Score=91.92 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=61.1
Q ss_pred HHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 112 (115)
.++..+...++.+|||+|||+|..+..+++. +..+|+|+|+++.+++.++++....+. +++++++|++++++++
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD 112 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence 3444445557789999999999999999864 346999999999999999999876665 8999999999888764
No 17
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=2.4e-14 Score=91.94 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (115)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (115)
.....+.++.+.+.+...++.+|||+|||+|.++..+++...++|+|+.+|++..+.+++++...++ +++++.+|..+
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 3456677888899988889999999999999999999975345999999999999999999999887 79999999987
Q ss_pred Ccc
Q 033605 108 LEW 110 (115)
Q Consensus 108 ~~~ 110 (115)
++.
T Consensus 124 ~~~ 126 (273)
T PF02353_consen 124 LPG 126 (273)
T ss_dssp ---
T ss_pred cCC
Confidence 664
No 18
>PRK05785 hypothetical protein; Provisional
Probab=99.57 E-value=2.2e-14 Score=90.10 Aligned_cols=78 Identities=22% Similarity=0.208 Sum_probs=58.6
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~ 106 (115)
.....+....+..+..... ++.+|||+|||+|.++..+++....+|+|+|+|++|++.+++.. .++++|++
T Consensus 32 g~~~~wr~~~~~~l~~~~~--~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~ 102 (226)
T PRK05785 32 NQDVRWRAELVKTILKYCG--RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFE 102 (226)
T ss_pred CCcHHHHHHHHHHHHHhcC--CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechh
Confidence 3344455555555544322 46799999999999999998753359999999999999998642 46789999
Q ss_pred CCcccCC
Q 033605 107 NLEWRGK 113 (115)
Q Consensus 107 ~~~~~~~ 113 (115)
++|+++.
T Consensus 103 ~lp~~d~ 109 (226)
T PRK05785 103 ALPFRDK 109 (226)
T ss_pred hCCCCCC
Confidence 9998764
No 19
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.56 E-value=3.2e-14 Score=91.57 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
..+.+.+++.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.|++.++++... .+++++++|+.++++++
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHH
Confidence 34445555555556788999999999999999998755 999999999999999987643 37999999999988764
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=3.7e-14 Score=92.91 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~ 112 (115)
++.+|||+|||+|.++..+++.+ .+|+|+|+++++++.|+.+....+. +++++++|++++++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc
Confidence 56799999999999999998764 4999999999999999987655443 7999999999988664
No 21
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.55 E-value=5.3e-14 Score=84.77 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=61.4
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
+.+++.+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+ +++++++|+.++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~~-~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAAD-NLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccCC-CEEEEECchhcCCccc
Confidence 44555555567789999999999999999987 4599999999999999999886532 8999999999988765
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.55 E-value=1.2e-13 Score=88.47 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=57.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhc---cC-CceeEEEccccCCcccCC
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAAD---LE-LDIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~---~~-~~v~~~~~d~~~~~~~~~ 113 (115)
.....++.+|||+|||+|.++..+++. + ..+|+|+|+|++|++.|+++... .. .+++++++|++++|+++.
T Consensus 68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 334456789999999999999988864 3 35999999999999999877541 11 279999999999998863
No 23
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.54 E-value=9.3e-14 Score=88.81 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=66.5
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.+.-....+++.+++.....++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....+ +++++++|+.+
T Consensus 9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~-~v~ii~~D~~~ 86 (258)
T PRK14896 9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAG-NVEIIEGDALK 86 (258)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCC-CEEEEEecccc
Confidence 3344455556666666566678899999999999999999874 599999999999999998876522 89999999998
Q ss_pred CcccC
Q 033605 108 LEWRG 112 (115)
Q Consensus 108 ~~~~~ 112 (115)
+++++
T Consensus 87 ~~~~~ 91 (258)
T PRK14896 87 VDLPE 91 (258)
T ss_pred CCchh
Confidence 88764
No 24
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=2.8e-14 Score=91.02 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=61.8
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d 104 (115)
|........+....++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+++. +++++++|
T Consensus 7 y~~~~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d 80 (255)
T PRK14103 7 YLAFADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGD 80 (255)
T ss_pred HHHHHhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcC
Confidence 33333344445556666666667889999999999999999864 456999999999999999763 47889999
Q ss_pred ccCCcccCC
Q 033605 105 IRNLEWRGK 113 (115)
Q Consensus 105 ~~~~~~~~~ 113 (115)
+++++....
T Consensus 81 ~~~~~~~~~ 89 (255)
T PRK14103 81 VRDWKPKPD 89 (255)
T ss_pred hhhCCCCCC
Confidence 987753333
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=1.4e-13 Score=88.27 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
...++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.++..++++... ..++.++++|+.+.++++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~ 115 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPE 115 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCC
Confidence 455555666678889999999999999988864355999999999999999998764 237999999999888765
No 26
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=88.54 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (115)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~ 110 (115)
...+=...++...+.....+|.|+|||+|..+..+++ .+.+.++|+|-|++|++.|+++.. +++|..+|+..+..
T Consensus 14 eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~p 89 (257)
T COG4106 14 ERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWKP 89 (257)
T ss_pred hccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcCC
Confidence 3344455677777888889999999999999999995 678899999999999999988776 68999999998876
Q ss_pred cC
Q 033605 111 RG 112 (115)
Q Consensus 111 ~~ 112 (115)
+.
T Consensus 90 ~~ 91 (257)
T COG4106 90 EQ 91 (257)
T ss_pred CC
Confidence 54
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=5.2e-14 Score=89.87 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
......++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.++++.. ++.++.+|+..+..++
T Consensus 17 ~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~~~ 92 (258)
T PRK01683 17 TRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQPPQ 92 (258)
T ss_pred hcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCCCC
Confidence 344555666666667889999999999999999864 45699999999999999998753 5788999988765443
Q ss_pred C
Q 033605 113 K 113 (115)
Q Consensus 113 ~ 113 (115)
.
T Consensus 93 ~ 93 (258)
T PRK01683 93 A 93 (258)
T ss_pred C
Confidence 3
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=9e-14 Score=90.11 Aligned_cols=67 Identities=34% Similarity=0.437 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 114 (115)
.++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.++++....+.++++...|+...++++.|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~f 185 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEY 185 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCc
Confidence 3567999999999999999998754 999999999999999999888777889999998776665443
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=88.07 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (115)
.+..++..++ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. +++++++|+.+++
T Consensus 33 ~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 33 DLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 3445555544 4667999999999999999998754 999999999999999999887765 7899999987764
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=2.2e-13 Score=86.58 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~ 112 (115)
.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|++.|+++....+. +++++++|+.++++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC
Confidence 3667999999999999988875 2457999999999999999999887655 7999999999888764
No 31
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.1e-13 Score=86.62 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=64.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CC------CeEEEEeCChhHHHHHHHHhhccCC----ceeEEEcccc
Q 033605 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA------DQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIR 106 (115)
Q Consensus 38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~------~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~ 106 (115)
+..+..+...++.++||++||||.+++.++++ .. .+|+++|++|+|++.++++..+.+. .+.++++|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 33445556667899999999999999999853 22 6999999999999999999976655 4899999999
Q ss_pred CCcccCCCC
Q 033605 107 NLEWRGKYI 115 (115)
Q Consensus 107 ~~~~~~~f~ 115 (115)
++||++..|
T Consensus 170 ~LpFdd~s~ 178 (296)
T KOG1540|consen 170 DLPFDDDSF 178 (296)
T ss_pred cCCCCCCcc
Confidence 999998543
No 32
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.52 E-value=8e-14 Score=91.38 Aligned_cols=82 Identities=26% Similarity=0.468 Sum_probs=67.1
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (115)
+.+......+++.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++....+. +++++++|+
T Consensus 152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~ 230 (315)
T PRK03522 152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS 230 (315)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence 44455566666666655544467899999999999999999865 5999999999999999999988887 799999999
Q ss_pred cCCc
Q 033605 106 RNLE 109 (115)
Q Consensus 106 ~~~~ 109 (115)
.++.
T Consensus 231 ~~~~ 234 (315)
T PRK03522 231 TQFA 234 (315)
T ss_pred HHHH
Confidence 7654
No 33
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=92.63 Aligned_cols=81 Identities=25% Similarity=0.264 Sum_probs=66.9
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCD 104 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d 104 (115)
...+...++.+++.+..... ++.+|||+|||+|.++..++. .+..+++|+|+|+.+++.|+++....+.+++++++|
T Consensus 231 vLIPRpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD 308 (423)
T PRK14966 231 VLIPRPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGS 308 (423)
T ss_pred ccCCCccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 33466677888888776543 456999999999999999885 456799999999999999999998877789999999
Q ss_pred ccCC
Q 033605 105 IRNL 108 (115)
Q Consensus 105 ~~~~ 108 (115)
+.+.
T Consensus 309 l~e~ 312 (423)
T PRK14966 309 WFDT 312 (423)
T ss_pred hhcc
Confidence 8654
No 34
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.52 E-value=1.2e-13 Score=87.87 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (115)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~ 110 (115)
.......+.+++.++..++.+|||+|||+|.++..++..+ .+++++|+|+.|++.++++.. ...++++|++.+|+
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~ 99 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPL 99 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcC
Confidence 3455555666666555567899999999999998888764 599999999999999988754 34688999999887
Q ss_pred cC
Q 033605 111 RG 112 (115)
Q Consensus 111 ~~ 112 (115)
++
T Consensus 100 ~~ 101 (251)
T PRK10258 100 AT 101 (251)
T ss_pred CC
Confidence 75
No 35
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.51 E-value=1.8e-13 Score=90.17 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=70.1
Q ss_pred cCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEc
Q 033605 25 QYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQC 103 (115)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~ 103 (115)
.+..+......+...+++.....++.+|||+|||+|.++..++..+ .+++|+|+++.|+..++.++...+. +++++++
T Consensus 159 ~~~~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~ 237 (329)
T TIGR01177 159 PFFKPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG 237 (329)
T ss_pred CccCCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec
Confidence 3555555556666666665555678899999999999998877664 5999999999999999999988877 7899999
Q ss_pred cccCCcccC
Q 033605 104 DIRNLEWRG 112 (115)
Q Consensus 104 d~~~~~~~~ 112 (115)
|+.++|+++
T Consensus 238 D~~~l~~~~ 246 (329)
T TIGR01177 238 DATKLPLSS 246 (329)
T ss_pred chhcCCccc
Confidence 999988754
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.51 E-value=5e-14 Score=78.15 Aligned_cols=61 Identities=34% Similarity=0.618 Sum_probs=50.6
Q ss_pred EEEEcCCCChHHHHHHhc---C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 52 VADFGCGCGTLGAAATLL---G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 52 vLDlG~G~G~~~~~~~~~---~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
|||+|||+|..+..++.. + ..+++|+|+|+.|++.++++....+.++++++.|+.++++.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccC
Confidence 799999999999999864 2 269999999999999999999877679999999999987654
No 37
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=4e-13 Score=82.14 Aligned_cols=66 Identities=27% Similarity=0.363 Sum_probs=55.3
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
+..+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.++++....+. +++++++|+.
T Consensus 24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~ 91 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP 91 (187)
T ss_pred HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch
Confidence 34445557789999999999999999864 446999999999999999999887766 7899998874
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.51 E-value=3.4e-13 Score=84.28 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (115)
..++.+|||+|||+|.++..++..+. +++|+|+|+.|+..|+++....+. ++++.++|+.+.+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 34678999999999999999987644 999999999999999999876654 7999999988765
No 39
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=2.9e-13 Score=87.61 Aligned_cols=70 Identities=40% Similarity=0.552 Sum_probs=60.3
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL 96 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 96 (115)
|.+..+.+.+++-.+++.+. .++.+|||+|||+|.+++..++.++.+|+|+|++|.+++.|++|+..+++
T Consensus 140 FGTG~H~TT~lcl~~l~~~~-~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~ 209 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEKYV-KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV 209 (295)
T ss_dssp S-SSHCHHHHHHHHHHHHHS-STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-
T ss_pred ccCCCCHHHHHHHHHHHHhc-cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC
Confidence 66788888888887777764 36789999999999999999999988999999999999999999999887
No 40
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=4.4e-13 Score=83.63 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
..+...+++.+...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|++++...+. +++++++|+.+.
T Consensus 63 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 63 PHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC
Confidence 4455566666666788999999999999999998653 24699999999999999999998887 899999998754
No 41
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=4.3e-13 Score=83.53 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
...+...+++.+...++.+|||+|||+|+.+..+++. + ..+|+++|+++.+++.++++....+. +++++++|+....
T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY 140 (212)
T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 3445555666666678899999999999999988864 2 35999999999999999999988777 8999999986543
No 42
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.6e-13 Score=88.35 Aligned_cols=71 Identities=37% Similarity=0.562 Sum_probs=62.3
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELD 97 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~ 97 (115)
|.++.+.+.++.-..++.+.. ++.+|||+|||+|.+++.+++.++.+++|+|++|.+++.++.|...++++
T Consensus 141 FGTG~HpTT~lcL~~Le~~~~-~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 141 FGTGTHPTTSLCLEALEKLLK-KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred cCCCCChhHHHHHHHHHHhhc-CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc
Confidence 567777888887777766554 88899999999999999999999999999999999999999999988763
No 43
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.50 E-value=3.3e-13 Score=88.87 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=74.3
Q ss_pred hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChh
Q 033605 5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSD 82 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~ 82 (115)
.++...+..+.|......++....+..+.+.+.+.+++.... .++.+|||+|||+|..+..+++ .+..+++++|+|+.
T Consensus 69 ~~~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~ 148 (340)
T PLN02490 69 FIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH 148 (340)
T ss_pred hhhhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH
Confidence 344455555555544444444333445556665555554433 3567999999999999988885 34569999999999
Q ss_pred HHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 83 SLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 83 ~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
|++.++++.... +++++.+|++++++++
T Consensus 149 mL~~A~~k~~~~--~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 149 QLAKAKQKEPLK--ECKIIEGDAEDLPFPT 176 (340)
T ss_pred HHHHHHHhhhcc--CCeEEeccHHhCCCCC
Confidence 999999875422 6889999999988765
No 44
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.50 E-value=1.4e-13 Score=75.05 Aligned_cols=60 Identities=32% Similarity=0.507 Sum_probs=50.1
Q ss_pred EEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605 53 ADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 53 LDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 114 (115)
||+|||+|..+..+++.+..+++++|+++++++.++++.... ++.++++|++++|+++..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~--~~~~~~~d~~~l~~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE--GVSFRQGDAEDLPFPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS--TEEEEESBTTSSSS-TT-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc--CchheeehHHhCcccccc
Confidence 899999999999999876679999999999999999988754 456999999999998754
No 45
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.49 E-value=2.9e-13 Score=87.79 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=66.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
.+.-....+++.+++.....++.+|||+|||+|.++..++... .+|+++|+++.+++.+++++...+. +++++++|+
T Consensus 16 QnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 16 QHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3343455566666666666688899999999999999998764 4899999999999999998876542 899999999
Q ss_pred cCCccc
Q 033605 106 RNLEWR 111 (115)
Q Consensus 106 ~~~~~~ 111 (115)
.+.+++
T Consensus 95 l~~~~~ 100 (294)
T PTZ00338 95 LKTEFP 100 (294)
T ss_pred hhhccc
Confidence 887654
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.49 E-value=8.7e-13 Score=75.28 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=56.5
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
+...+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++....+. +++++.+|+..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPE 80 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccc
Confidence 444445556779999999999999999964 457999999999999999999887765 78999888764
No 47
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.49 E-value=2.7e-13 Score=92.51 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (115)
..+...++.+.+.+++.+...++.+|||+|||+|.+++.+++.. .+|+|+|+|+.|++.|++++...+. +++++++|+
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~ 354 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANL 354 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeCh
Confidence 34555677788888877666677899999999999999999764 5999999999999999999988777 899999998
Q ss_pred cC
Q 033605 106 RN 107 (115)
Q Consensus 106 ~~ 107 (115)
.+
T Consensus 355 ~~ 356 (443)
T PRK13168 355 EE 356 (443)
T ss_pred HH
Confidence 64
No 48
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.49 E-value=5.1e-13 Score=82.23 Aligned_cols=68 Identities=24% Similarity=0.388 Sum_probs=57.0
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
+...+...++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++...+. +++++++|+.+
T Consensus 32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 444545557789999999999999999853 456999999999999999999988776 79999998854
No 49
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=9.3e-14 Score=86.43 Aligned_cols=64 Identities=30% Similarity=0.492 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (115)
..+.+|||+|||-|.++..+|+.+ ++|+|+|+++++++.|+....+.++++++.+..++++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc
Confidence 478899999999999999999997 5999999999999999999999888888888877766544
No 50
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.49 E-value=8.1e-13 Score=83.62 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~ 112 (115)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++....+. +++++++|+.++++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC
Confidence 36679999999999999988863 456999999999999999998876543 7899999999888654
No 51
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.48 E-value=6.1e-13 Score=86.15 Aligned_cols=80 Identities=26% Similarity=0.373 Sum_probs=63.9
Q ss_pred CchhhHHHHHHHHHHhcCCCCC-CeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605 28 TGPHIASRMLYTAENSFGDVSN-KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~-~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~ 103 (115)
.+...++.+++.++..+....+ .+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++....+. +++++++
T Consensus 93 iPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~ 172 (284)
T TIGR00536 93 IPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS 172 (284)
T ss_pred CCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 4556677777777655432233 69999999999999999964 446999999999999999999988776 4999999
Q ss_pred cccC
Q 033605 104 DIRN 107 (115)
Q Consensus 104 d~~~ 107 (115)
|+.+
T Consensus 173 d~~~ 176 (284)
T TIGR00536 173 NLFE 176 (284)
T ss_pred chhc
Confidence 9765
No 52
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=8.3e-13 Score=85.48 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=61.6
Q ss_pred chhhHHHHHHHHHHh-cCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605 29 GPHIASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD 104 (115)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d 104 (115)
+...++.++...+.. ....++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++....+. +++++++|
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D 180 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD 180 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 444555566555442 22234579999999999999999964 456999999999999999999988775 69999999
Q ss_pred ccC
Q 033605 105 IRN 107 (115)
Q Consensus 105 ~~~ 107 (115)
+.+
T Consensus 181 ~~~ 183 (284)
T TIGR03533 181 LFA 183 (284)
T ss_pred hhh
Confidence 753
No 53
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.48 E-value=4.5e-13 Score=92.60 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=75.6
Q ss_pred hhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcC------------------------CCCCCeEEEEcCCCCh
Q 033605 6 LESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG------------------------DVSNKVVADFGCGCGT 61 (115)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~vLDlG~G~G~ 61 (115)
++..+.....+.....--.....|+..++.+++.+++.+. ..++.+|||+|||+|.
T Consensus 72 lqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~ 151 (506)
T PRK01544 72 IAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGC 151 (506)
T ss_pred HHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhH
Confidence 3344444344443434444567788889999988776542 1134689999999999
Q ss_pred HHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605 62 LGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (115)
Q Consensus 62 ~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (115)
+++.++. .+..+|+++|+|+.+++.|+++....+. +++++++|+.+
T Consensus 152 iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~ 200 (506)
T PRK01544 152 IAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE 200 (506)
T ss_pred HHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh
Confidence 9999885 4567999999999999999999887765 68999999753
No 54
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.47 E-value=1.3e-12 Score=81.03 Aligned_cols=75 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (115)
.+...+.+.+...++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+. +++++.+|+.+..
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 34555555555567789999999999999888863 2 35999999999999999999887765 5899999987643
No 55
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=6.5e-13 Score=84.15 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=71.5
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~ 105 (115)
+..+.-.....++.+++.....++++|||||+|.|.+|..+++.+. +|+++|+++.++...++.....+ |++++++|+
T Consensus 8 ~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~-n~~vi~~Da 85 (259)
T COG0030 8 LGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYD-NLTVINGDA 85 (259)
T ss_pred cccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccccc-ceEEEeCch
Confidence 3444555666677888887777889999999999999999998855 89999999999999999876333 899999999
Q ss_pred cCCcccC
Q 033605 106 RNLEWRG 112 (115)
Q Consensus 106 ~~~~~~~ 112 (115)
.+.++++
T Consensus 86 Lk~d~~~ 92 (259)
T COG0030 86 LKFDFPS 92 (259)
T ss_pred hcCcchh
Confidence 9999885
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.47 E-value=1.8e-12 Score=78.23 Aligned_cols=62 Identities=37% Similarity=0.575 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
+..+|||+|||+|.+++.+++... .+|+++|+++.+++.++.+...++. +++++..|+.+..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~ 94 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL 94 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc
Confidence 777999999999999999997544 4799999999999999999999888 4999999986533
No 57
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=4.5e-13 Score=86.46 Aligned_cols=86 Identities=27% Similarity=0.256 Sum_probs=65.4
Q ss_pred CccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-
Q 033605 19 PKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL- 96 (115)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~- 96 (115)
..........|..-++.+++.++........ +|||+|||+|..++.++.. +..+|+|+|+|+.+++.|+.|+..++.
T Consensus 82 ~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~ 160 (280)
T COG2890 82 RFKVDEGVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV 160 (280)
T ss_pred eeeeCCCceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc
Confidence 3333444556677778788776533232222 8999999999999999965 446999999999999999999999985
Q ss_pred ceeEEEccc
Q 033605 97 DIDFVQCDI 105 (115)
Q Consensus 97 ~v~~~~~d~ 105 (115)
++.++++|+
T Consensus 161 ~~~~~~~dl 169 (280)
T COG2890 161 RVLVVQSDL 169 (280)
T ss_pred cEEEEeeec
Confidence 777777764
No 58
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=8.7e-13 Score=86.17 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHh-cCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605 29 GPHIASRMLYTAENS-FGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD 104 (115)
Q Consensus 29 ~~~~~~~~~~~~~~~-~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d 104 (115)
+...+...+...+.. .+...+.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++....+. +++++++|
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D 192 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD 192 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence 444555555555432 22222368999999999999999864 457999999999999999999988775 69999999
Q ss_pred ccC
Q 033605 105 IRN 107 (115)
Q Consensus 105 ~~~ 107 (115)
+.+
T Consensus 193 ~~~ 195 (307)
T PRK11805 193 LFA 195 (307)
T ss_pred hhh
Confidence 754
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.46 E-value=7.6e-13 Score=90.99 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=60.9
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
+.+++.+...++.+|||+|||+|..+..+++....+|+|+|+|+.++..|+++......++++.++|+...++++
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD 330 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC
Confidence 334444445567899999999999999988654559999999999999999887655458999999999888765
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.46 E-value=3.8e-13 Score=83.22 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc-cCCc
Q 033605 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI-RNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~-~~~~ 109 (115)
++.+|||+|||+|..+..+++. +..+|+|+|+|+.+++.++++....+. ++.++++|+ +.++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~ 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH
Confidence 5679999999999999999864 456899999999999999999887776 899999999 6655
No 61
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.46 E-value=9.9e-13 Score=83.89 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (115)
....+.+.+++.....++.+|||+|||+|.++..+++... .++++|+++.+++.++.+... ..+++++++|+.+++++
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP 90 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh
Confidence 3445555555555666788999999999999999998754 799999999999999987754 23899999999988875
No 62
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=8.6e-13 Score=81.70 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=50.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++.. ++.++++|+.+ ++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~ 103 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKD 103 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCC
Confidence 36678999999999999999864 55699999999999999988653 46788888877 6654
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=1.2e-12 Score=85.58 Aligned_cols=60 Identities=33% Similarity=0.456 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc------CCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~v~~~~~d~~~~ 108 (115)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.... ..++++..+|++++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc
Confidence 577999999999999999998754 9999999999999999987654 12678888887654
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.44 E-value=1.9e-12 Score=82.22 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=63.5
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (115)
.+...+..++..+..... ..+.+|||+|||+|.++..++.. +..+++|+|+++.+++.++.+....+. ++.++++|+
T Consensus 68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~ 146 (251)
T TIGR03534 68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW 146 (251)
T ss_pred cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch
Confidence 344455666666666543 34569999999999999999964 456999999999999999999988777 699999998
Q ss_pred cC
Q 033605 106 RN 107 (115)
Q Consensus 106 ~~ 107 (115)
.+
T Consensus 147 ~~ 148 (251)
T TIGR03534 147 FE 148 (251)
T ss_pred hc
Confidence 65
No 65
>PRK14967 putative methyltransferase; Provisional
Probab=99.44 E-value=1e-12 Score=82.42 Aligned_cols=68 Identities=29% Similarity=0.306 Sum_probs=56.3
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+......++.+|||+|||+|.++..++..+..+++++|+++.+++.++++....+.+++++++|+.+.
T Consensus 29 l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~ 96 (223)
T PRK14967 29 LAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA 96 (223)
T ss_pred HHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh
Confidence 33334456789999999999999999876556999999999999999999887776788899888653
No 66
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=80.43 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 33 ASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
+..+.+.+...+.. .++.+|||+|||+|.+++.++..+..+|+++|+++.+++.+++++...+. +++++++|+.+
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~ 113 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALS 113 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHH
Confidence 34444444443322 35679999999999999976655567999999999999999999988777 89999999865
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=1.2e-12 Score=79.52 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
.++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.+++++++|+.+.+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc
Confidence 3667999999999999999998755 9999999999999999998877778889999986543
No 68
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.43 E-value=2.4e-12 Score=83.51 Aligned_cols=79 Identities=32% Similarity=0.462 Sum_probs=60.8
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~ 103 (115)
|.+..+.+.++...+++.+. .++.+|||+|||+|.++..+++.+..+|+|+|+++.+++.++++...++. ++.+..+
T Consensus 138 FgtG~h~tt~l~l~~l~~~~-~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~ 216 (288)
T TIGR00406 138 FGTGTHPTTSLCLEWLEDLD-LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI 216 (288)
T ss_pred ccCCCCHHHHHHHHHHHhhc-CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence 33555566666655555543 36789999999999999988887777999999999999999999887765 4566665
Q ss_pred cc
Q 033605 104 DI 105 (115)
Q Consensus 104 d~ 105 (115)
+.
T Consensus 217 ~~ 218 (288)
T TIGR00406 217 YL 218 (288)
T ss_pred cc
Confidence 53
No 69
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.43 E-value=1.1e-12 Score=87.87 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=66.5
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d 104 (115)
++++....+.++..+...+...++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+++...++. +++++++|
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d 289 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD 289 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 345556666666666655443456799999999999999999764 5999999999999999999988887 89999999
Q ss_pred ccCC
Q 033605 105 IRNL 108 (115)
Q Consensus 105 ~~~~ 108 (115)
++++
T Consensus 290 ~~~~ 293 (374)
T TIGR02085 290 SAKF 293 (374)
T ss_pred HHHH
Confidence 8654
No 70
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.43 E-value=1.3e-12 Score=81.39 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-------------cCCceeEEEccccCCcc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEW 110 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~v~~~~~d~~~~~~ 110 (115)
.++.+|||+|||.|..+..+++.+. +|+|+|+|+.+++.+...... .+.+++++++|+.+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3567999999999999999998866 999999999999986442211 12378999999988773
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.42 E-value=4.5e-13 Score=82.40 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
...++||+|||+|.++..+++ .+..+++|+|+++.+++.|+++....+. |+.++++|+.++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence 556999999999999999996 4567999999999999999998887776 899999999764
No 72
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=8e-13 Score=83.22 Aligned_cols=68 Identities=22% Similarity=0.336 Sum_probs=59.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW 110 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 110 (115)
+.......+|||+|||+|..++.+++. ..+++++||+++.+.+.|+++...++. +++++++|+.++..
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~ 109 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK 109 (248)
T ss_pred hcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence 334445789999999999999999965 558999999999999999999998777 89999999987653
No 73
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.1e-12 Score=88.82 Aligned_cols=84 Identities=25% Similarity=0.424 Sum_probs=75.6
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d 104 (115)
++.+....+.+...+.+++...+++++||+.||.|.+++.++.. ..+|+|+|+++++++.|++|+..+++ |++|..++
T Consensus 271 ~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ 349 (432)
T COG2265 271 FQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD 349 (432)
T ss_pred eecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 56777888999999999988878899999999999999999965 55999999999999999999999998 89999999
Q ss_pred ccCCcc
Q 033605 105 IRNLEW 110 (115)
Q Consensus 105 ~~~~~~ 110 (115)
++++..
T Consensus 350 ae~~~~ 355 (432)
T COG2265 350 AEEFTP 355 (432)
T ss_pred HHHHhh
Confidence 987653
No 74
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.42 E-value=1.9e-12 Score=83.27 Aligned_cols=110 Identities=20% Similarity=0.126 Sum_probs=78.3
Q ss_pred chhhhhhhhcccCCCCccccccCCCchhh-HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh
Q 033605 4 KQLESVLGDLEQFSNPKVELEQYPTGPHI-ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD 82 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~ 82 (115)
+.++.....+..|.+....+.......++ +....+.+...++..++++|||||||+|+++..++..+++.|+|+|.++.
T Consensus 70 ~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l 149 (315)
T PF08003_consen 70 QQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL 149 (315)
T ss_pred HHHHHHHHhhCCcccCCcccCCEeecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence 45666777777887755555554444444 44456667777777899999999999999999999988989999999999
Q ss_pred HHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605 83 SLELASENAADLEL--DIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 83 ~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 113 (115)
...+.+......+. .+..+..-++++|..+.
T Consensus 150 f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 150 FYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 88775554443332 34455456777765333
No 75
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.41 E-value=1.7e-12 Score=88.34 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=65.7
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
.+......+...+.+.+...++.+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++++..++. +++++++|+.
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~ 350 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE 350 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH
Confidence 344556666777766655556689999999999999999876 35999999999999999999988877 8999999986
Q ss_pred C
Q 033605 107 N 107 (115)
Q Consensus 107 ~ 107 (115)
+
T Consensus 351 ~ 351 (431)
T TIGR00479 351 T 351 (431)
T ss_pred H
Confidence 5
No 76
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.41 E-value=2.4e-12 Score=77.21 Aligned_cols=98 Identities=23% Similarity=0.238 Sum_probs=70.9
Q ss_pred hhcccCCCCccccccCCCchhhHHHHHHHHHHhcC---CCC-CCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHH
Q 033605 11 GDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFG---DVS-NKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLE 85 (115)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~ 85 (115)
..+.+|..+...-+ .+-......++++++.+... ..+ ..+|||+|||.|.+...+++.+. ...+|+|+|+.+++
T Consensus 27 ~El~Nfr~hgd~GE-vWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~ 105 (227)
T KOG1271|consen 27 LELTNFREHGDEGE-VWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVE 105 (227)
T ss_pred HHHhhcccCCCccc-eecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHH
Confidence 34445544322222 22235566777777776654 233 34999999999999999997553 46999999999999
Q ss_pred HHHHHhhccCC--ceeEEEccccCCc
Q 033605 86 LASENAADLEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 86 ~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (115)
.|+..+...+. .|+|.+.|+.+-.
T Consensus 106 LA~niAe~~~~~n~I~f~q~DI~~~~ 131 (227)
T KOG1271|consen 106 LAQNIAERDGFSNEIRFQQLDITDPD 131 (227)
T ss_pred HHHHHHHhcCCCcceeEEEeeccCCc
Confidence 99988888777 3999999987744
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=4.2e-12 Score=81.74 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhh-ccCCceeEEEcc
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAA-DLELDIDFVQCD 104 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~~~~v~~~~~d 104 (115)
..+...++.+++.+.......++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.++++.. ....++.++++|
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 3455556677777765544556789999999999999999864 45799999999999999999987 222279999999
Q ss_pred ccC
Q 033605 105 IRN 107 (115)
Q Consensus 105 ~~~ 107 (115)
+.+
T Consensus 167 ~~~ 169 (275)
T PRK09328 167 WFE 169 (275)
T ss_pred ccC
Confidence 754
No 78
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.40 E-value=5.7e-12 Score=75.97 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=59.0
Q ss_pred HhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 42 NSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
..+...++++++|+|||+|..+++++. .+..+++++|-++++++..++|..+++. |++++.+++-+.
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 445667889999999999999999995 3457999999999999999999999998 999999998543
No 79
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.40 E-value=2.4e-12 Score=85.55 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=64.2
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d 104 (115)
++.+......+++.+.+.+...++ .+||+.||+|.+++.++.. ..+|+|+|+++.+++.|+.++..+++ |++|++++
T Consensus 175 fQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 175 FQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp --SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence 456677788899999888776555 8999999999999999987 45999999999999999999999998 99999988
Q ss_pred ccCC
Q 033605 105 IRNL 108 (115)
Q Consensus 105 ~~~~ 108 (115)
++++
T Consensus 253 ~~~~ 256 (352)
T PF05958_consen 253 AEDF 256 (352)
T ss_dssp SHHC
T ss_pred ccch
Confidence 7654
No 80
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.40 E-value=5.2e-12 Score=80.48 Aligned_cols=78 Identities=26% Similarity=0.291 Sum_probs=61.0
Q ss_pred CchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605 28 TGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~ 105 (115)
.+...++.+++.+...... ..+.+|||+|||+|.+++.+++ .+..+++++|+|+.+++.+++|...++ ++++++|+
T Consensus 65 ~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~ 142 (251)
T TIGR03704 65 VPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDL 142 (251)
T ss_pred CCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeec
Confidence 3556677777777665432 2345899999999999999985 445699999999999999999987654 47888887
Q ss_pred cC
Q 033605 106 RN 107 (115)
Q Consensus 106 ~~ 107 (115)
.+
T Consensus 143 ~~ 144 (251)
T TIGR03704 143 YD 144 (251)
T ss_pred hh
Confidence 64
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=8.8e-12 Score=77.60 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
.....+...+...++.+|||+|||+|..+..++... .+++++|+++.+++.+++++...+. +++++++|+.+
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 137 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK 137 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc
Confidence 344445555556678899999999999998887664 4899999999999999999988777 79999999754
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.39 E-value=3.6e-12 Score=85.07 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=57.5
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
...+....+..+||||||+|.++..+|. .+...++|+|+++.++..+.+++...+. |+.++++|+..+
T Consensus 115 ~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l 184 (390)
T PRK14121 115 LDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL 184 (390)
T ss_pred HHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh
Confidence 3333444667999999999999999996 4567999999999999999999988887 999999998653
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.38 E-value=7.1e-12 Score=84.11 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
....+..+.+.+...++.+|||+|||+|.++..+++....+|+|+|+|+++++.++++... .++++..+|+.++
T Consensus 152 q~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l~v~~~~~D~~~l 225 (383)
T PRK11705 152 QEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--LPVEIRLQDYRDL 225 (383)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--CeEEEEECchhhc
Confidence 3445666667767778889999999999999999875455999999999999999998753 3578888887654
No 84
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=8.3e-12 Score=76.68 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc-CCcc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR-NLEW 110 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~-~~~~ 110 (115)
++-.+.+.+...++++|||||||+|+.+..+++... +|+++|..++..+.|++++...+. ||.++++|.. .++-
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 444445555667899999999999999999998755 999999999999999999999998 9999999963 4443
No 85
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.38 E-value=4.1e-12 Score=82.89 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC-CcccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN-LEWRG 112 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~-~~~~~ 112 (115)
++.+|||+|||+|..+..+++.. ..+++++|+|++|++.++++..... .++.++++|+.+ +++++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence 56799999999999999998653 4599999999999999998876532 378889999876 44443
No 86
>PHA03412 putative methyltransferase; Provisional
Probab=99.38 E-value=3.6e-12 Score=79.78 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=65.3
Q ss_pred ccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----CCCeEEEEeCChhHHHHHHHHhhccC
Q 033605 20 KVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----GADQVIAIDIDSDSLELASENAADLE 95 (115)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~ 95 (115)
.....+|.+|..+...++.. . ..+.+|||+|||+|.++..+++. ...+|+++|+++.+++.|+++..
T Consensus 27 ~~~~GqFfTP~~iAr~~~i~---~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--- 97 (241)
T PHA03412 27 NSELGAFFTPIGLARDFTID---A---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--- 97 (241)
T ss_pred cccCCccCCCHHHHHHHHHh---c---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc---
Confidence 45567899999887765422 1 14679999999999999988853 24599999999999999998764
Q ss_pred CceeEEEccccCCcccCC
Q 033605 96 LDIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 96 ~~v~~~~~d~~~~~~~~~ 113 (115)
++.++++|+...++..+
T Consensus 98 -~~~~~~~D~~~~~~~~~ 114 (241)
T PHA03412 98 -EATWINADALTTEFDTL 114 (241)
T ss_pred -CCEEEEcchhcccccCC
Confidence 57899999987665443
No 87
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.38 E-value=4.1e-12 Score=79.98 Aligned_cols=71 Identities=28% Similarity=0.460 Sum_probs=57.3
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
+......++.+|||+|||+|..+..++... ..+++++|+++.+++.++++....+. ++.++.+|+.+.+++
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 333334467899999999999999998654 37999999999999999998866433 789999999887754
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.38 E-value=7.5e-12 Score=77.20 Aligned_cols=68 Identities=24% Similarity=0.481 Sum_probs=57.2
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 108 (115)
+......++.+|||+|||+|.++..++.. ...+|+++|+++.+++.++++....+. ++.++.+|+.+.
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 34556668889999999999999998853 346999999999999999999888873 899999998753
No 89
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=1.5e-12 Score=73.80 Aligned_cols=61 Identities=38% Similarity=0.547 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (115)
+.+|||+|||+|.++..+++.+..+++|+|+++..++.++.+....+. +++++++|+.+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence 468999999999999999977657999999999999999999998866 7999999987765
No 90
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.37 E-value=7.9e-12 Score=76.00 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=52.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCC
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 114 (115)
.++...-.++||+|||.|.++..++.. +.+++++|+|+.+++.|+++....+ +|++++.|+.+...+.+|
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~~P~~~F 107 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP-HVEWIQADVPEFWPEGRF 107 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT---SS-E
T ss_pred hcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCCCCCCCe
Confidence 345556678999999999999999987 4599999999999999999998765 899999999877665554
No 91
>PRK08317 hypothetical protein; Provisional
Probab=99.37 E-value=1.6e-11 Score=77.15 Aligned_cols=76 Identities=26% Similarity=0.333 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
.+.+.+.....++.+|||+|||+|.++..+++. +..+++|+|+++.++..++++......++.++..|+..+++++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 85 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPD 85 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCC
Confidence 344455556667889999999999999999864 3469999999999999999884333347999999998877654
No 92
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.36 E-value=5.9e-12 Score=83.72 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=63.4
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
.+......+++.+.+.... .+.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.+++++..+++ +++++++|++
T Consensus 178 ~N~~~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred CCHHHHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 3345566777777666432 23479999999999999888763 5999999999999999999998887 8999999987
Q ss_pred C
Q 033605 107 N 107 (115)
Q Consensus 107 ~ 107 (115)
+
T Consensus 256 ~ 256 (353)
T TIGR02143 256 E 256 (353)
T ss_pred H
Confidence 5
No 93
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.36 E-value=7.2e-12 Score=78.48 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=54.7
Q ss_pred CeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605 50 KVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f 114 (115)
++|||+|||+|..+..+++. +..+++|+|+|+.++..++++....+. +++++.+|+...++++.|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~f 68 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTY 68 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCC
Confidence 37999999999999999864 456999999999999999999877665 789999999776665544
No 94
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=1.2e-11 Score=81.16 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
..+...+++.+...++.+|||+|||+|.++..+++... ..|+++|+++.+++.|+++....+. ++.++++|+.+..
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 34445555555556778999999999999999986432 4799999999999999999888777 7999999976543
No 95
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.35 E-value=9.5e-12 Score=83.10 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=55.8
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccC
Q 033605 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRN 107 (115)
Q Consensus 38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~ 107 (115)
+.+++.++.....+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++++..++. +++++..|+..
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 34555655545569999999999999999864 567999999999999999999876542 67888888643
No 96
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.35 E-value=9.4e-12 Score=76.25 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (115)
.++.+|||++||+|.++++++..++.+|+++|.++.+++.+++++...+. +++++++|+.+
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 36789999999999999999988888999999999999999999988776 68999999844
No 97
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.35 E-value=1.5e-11 Score=77.91 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW 110 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 110 (115)
...+++.+++.....+++.|||+|.|||.++..+.+.+. +|+++|+++.|+...+++....+. .++++.||+.+.++
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 456777788888888999999999999999999998844 999999999999999999988775 79999999988776
Q ss_pred c
Q 033605 111 R 111 (115)
Q Consensus 111 ~ 111 (115)
|
T Consensus 122 P 122 (315)
T KOG0820|consen 122 P 122 (315)
T ss_pred c
Confidence 5
No 98
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.35 E-value=7.4e-12 Score=83.53 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=65.1
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (115)
+.+....+.+++.+.+.+.. .+.++||++||+|.+++.+++. ..+|+|+|+++.+++.+++|+..++. +++++++|+
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~ 263 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA 263 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH
Confidence 34556677788777776543 2357999999999999988875 45999999999999999999988887 899999998
Q ss_pred cC
Q 033605 106 RN 107 (115)
Q Consensus 106 ~~ 107 (115)
.+
T Consensus 264 ~~ 265 (362)
T PRK05031 264 EE 265 (362)
T ss_pred HH
Confidence 65
No 99
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=7.7e-12 Score=78.17 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-------------cCCceeEEEccccCCcc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-------------LELDIDFVQCDIRNLEW 110 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~v~~~~~d~~~~~~ 110 (115)
.++.+|||+|||.|..+..+++.+. +|+|+|+|+.+++.+...... ...++++.++|+.+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 3567999999999999999999866 999999999999987432111 12268999999988753
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.35 E-value=1e-11 Score=79.18 Aligned_cols=75 Identities=39% Similarity=0.565 Sum_probs=53.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~ 103 (115)
+..+.+.+..-..+... ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....+. ++.+..+
T Consensus 100 tg~h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~ 176 (250)
T PRK00517 100 TGTHPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176 (250)
T ss_pred CCCCHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence 33344444433333332 236789999999999999988877666799999999999999999887765 3444443
No 101
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=7e-12 Score=78.89 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... ++.++.+|+++.++++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---NVQFICGDAEKLPLED 96 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---CCeEEecchhhCCCCC
Confidence 345799999999999999998653 46799999999999999887652 6889999999888654
No 102
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.35 E-value=1.7e-11 Score=79.03 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=51.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhc-C---CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLL-G---ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
.+.+|||+|||+|.++..+++. + ...++|+|+|+.++..|+++.. ++.+..+|+.++|+++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~ 149 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFAD 149 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcC
Confidence 5578999999999999988753 2 2379999999999999987643 6889999999999875
No 103
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.35 E-value=6.6e-12 Score=80.82 Aligned_cols=68 Identities=25% Similarity=0.307 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 112 (115)
...++.+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++....+. +++++.+|++++++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~ 144 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVAD 144 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCC
Confidence 3457789999999999988877753 33 4899999999999999999877766 8999999999988765
No 104
>PRK04266 fibrillarin; Provisional
Probab=99.34 E-value=2.3e-11 Score=76.40 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=52.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++..++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.+++... .|+.++.+|+..
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~ 131 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARK 131 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCC
Confidence 456668889999999999999999964 3458999999999999887766543 378999999864
No 105
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.34 E-value=2.5e-11 Score=76.24 Aligned_cols=59 Identities=34% Similarity=0.532 Sum_probs=51.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (115)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+. ++.+..+|+.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 4677999999999999999987755 799999999999999998877655 7888888854
No 106
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.33 E-value=5.7e-12 Score=82.41 Aligned_cols=89 Identities=26% Similarity=0.291 Sum_probs=76.6
Q ss_pred ccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEE
Q 033605 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQ 102 (115)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~ 102 (115)
.+|..+.....++.+.+++.....++..|||..||||.+.+++.-.+. +++|.|++..|+.-++.|+..+++ ...++.
T Consensus 173 RPf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 173 RPFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred CCccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 346666777777888888777777899999999999999999988766 999999999999999999999987 776777
Q ss_pred c-cccCCcccCC
Q 033605 103 C-DIRNLEWRGK 113 (115)
Q Consensus 103 ~-d~~~~~~~~~ 113 (115)
+ |+.++|++++
T Consensus 252 ~~Da~~lpl~~~ 263 (347)
T COG1041 252 VLDATNLPLRDN 263 (347)
T ss_pred ecccccCCCCCC
Confidence 6 9999999874
No 107
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.33 E-value=1.9e-11 Score=80.98 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=54.2
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.++.....+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++...++...+++..|+..
T Consensus 189 l~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~ 256 (342)
T PRK09489 189 LSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS 256 (342)
T ss_pred HHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 34444344568999999999999999965 44699999999999999999998877766778888654
No 108
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=79.02 Aligned_cols=80 Identities=13% Similarity=0.228 Sum_probs=59.8
Q ss_pred ccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEE
Q 033605 24 EQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQ 102 (115)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~ 102 (115)
..|.+|..+....+ .. .....+|||+|||+|.++..++.. +..+|+|+|+++.+++.++++.. ++++++
T Consensus 46 G~FfTP~~i~~~f~---~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWDFT---ID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWIT 115 (279)
T ss_pred eeEcCCHHHHHHHH---hc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEEE
Confidence 45677777754432 11 124569999999999999888754 34699999999999999998753 678999
Q ss_pred ccccCCcccCC
Q 033605 103 CDIRNLEWRGK 113 (115)
Q Consensus 103 ~d~~~~~~~~~ 113 (115)
+|+.++....+
T Consensus 116 ~D~~e~~~~~k 126 (279)
T PHA03411 116 SDVFEFESNEK 126 (279)
T ss_pred CchhhhcccCC
Confidence 99987764433
No 109
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.32 E-value=3e-11 Score=73.43 Aligned_cols=87 Identities=29% Similarity=0.324 Sum_probs=62.2
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCe---------EEEEeCChhHHHHHHHHhhccC
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQ---------VIAIDIDSDSLELASENAADLE 95 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~---------v~~vD~s~~~~~~a~~~~~~~~ 95 (115)
+..+....+.+...++......++..|||..||+|.+.++.+.. .... ++|.|+++.++..+++|+...+
T Consensus 6 ~~~~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 6 FFGPAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp SSSSTSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 44455555666666666656667889999999999999998742 2223 8999999999999999999887
Q ss_pred C--ceeEEEccccCCcccC
Q 033605 96 L--DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 96 ~--~v~~~~~d~~~~~~~~ 112 (115)
. .+.+.+.|+.++++.+
T Consensus 86 ~~~~i~~~~~D~~~l~~~~ 104 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPD 104 (179)
T ss_dssp -CGGEEEEE--GGGGGGTT
T ss_pred cCCceEEEecchhhccccc
Confidence 7 6899999999999543
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.32 E-value=2.2e-11 Score=75.62 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
...+...+++.+...++.+|||+|||+|+.+..++.. +. ..|+++|+.+..++.|++++...+. |+.++++|..
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~ 133 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS 133 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh
Confidence 3455666666767779999999999999999999864 32 3799999999999999999999888 9999999964
No 111
>PRK06922 hypothetical protein; Provisional
Probab=99.32 E-value=1.8e-11 Score=85.96 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
.++.+|||+|||+|..+..+++ .+..+++|+|+|+.|++.|+++....+.++.++++|+.+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp 480 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLS 480 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCc
Confidence 3678999999999999988885 55679999999999999999887665557889999998876
No 112
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.30 E-value=1.3e-11 Score=80.44 Aligned_cols=73 Identities=27% Similarity=0.385 Sum_probs=64.4
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 113 (115)
++++....+++.|||+|||+|.+++..++.++++|+++|.|. |.+.|++.+..+.. +++++.|.++++++|++
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEK 243 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence 444445568899999999999999999999999999999987 89999998887766 89999999999999975
No 113
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=77.51 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=64.5
Q ss_pred CCCchhhHHHHHHHHHHhcCC---CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--cee
Q 033605 26 YPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DID 99 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~ 99 (115)
...|+..++..++.+++.... .++..+||+|||+|.+++.++. .+...++++|.|+.++..|.+|+..++. .+.
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 456777788877777766543 4566899999999999999884 6678999999999999999999998877 677
Q ss_pred EEEccc
Q 033605 100 FVQCDI 105 (115)
Q Consensus 100 ~~~~d~ 105 (115)
+++.++
T Consensus 203 v~~~~m 208 (328)
T KOG2904|consen 203 VIHNIM 208 (328)
T ss_pred EEeccc
Confidence 765544
No 114
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.29 E-value=1.5e-11 Score=77.50 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-------ceeEEEccccCCc
Q 033605 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRNLE 109 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~~~ 109 (115)
+++|||+|||.|.++..+++.++ .|+|+|+++.|++.|++.....+. ++++.+.++++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~ 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc
Confidence 47899999999999999999865 999999999999999998444433 3667777777654
No 115
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=99.29 E-value=4.5e-11 Score=76.69 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~ 105 (115)
+..+.-....+++.+++.+...++..|||+|+|.|.++..+++.+ .+++++|+++.+++..++..... .+++++.+|+
T Consensus 8 ~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~-~~~~vi~~D~ 85 (262)
T PF00398_consen 8 LGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN-PNVEVINGDF 85 (262)
T ss_dssp CTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC-SSEEEEES-T
T ss_pred CCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc-ccceeeecch
Confidence 344455566777777777776788999999999999999999876 69999999999999999987632 2899999999
Q ss_pred cCCcccC
Q 033605 106 RNLEWRG 112 (115)
Q Consensus 106 ~~~~~~~ 112 (115)
.+++.+.
T Consensus 86 l~~~~~~ 92 (262)
T PF00398_consen 86 LKWDLYD 92 (262)
T ss_dssp TTSCGGG
T ss_pred hccccHH
Confidence 9988765
No 116
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.28 E-value=1.8e-11 Score=79.90 Aligned_cols=71 Identities=27% Similarity=0.368 Sum_probs=61.3
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
+..+....++++|||+|||+|.+++..|+.++.+|+++|.|.-+ +.|.+.+..++. -++++++.++++.+|
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP 124 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP 124 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC
Confidence 33333346889999999999999999999999999999999855 999999988887 589999999998887
No 117
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=6.6e-11 Score=72.11 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-c--eeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--v~~~~~d~~~ 107 (115)
.++.+|||+|||+|.++..++.. ..+++++|+|+.+++.++++....+. + +.++++|+.+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 84 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE 84 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc
Confidence 46779999999999999999977 46999999999999999998877665 3 8888888755
No 118
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.28 E-value=6.2e-11 Score=77.53 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccC
Q 033605 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~ 112 (115)
...+.+.....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.++++....+. +++++.+|+.+.++++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC
Confidence 34455555556678999999999999999996 45579999998 7899999999888776 7999999997665543
No 119
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.27 E-value=6.4e-11 Score=74.64 Aligned_cols=79 Identities=30% Similarity=0.440 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
.......+..+.......++.+|||+|||+|.++..+++.+ .+++++|+++.++..++++....+.+++++..++.+++
T Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 108 (233)
T PRK05134 30 HRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA 108 (233)
T ss_pred HHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh
Confidence 34444445555555445577899999999999999888764 48999999999999999887766557788888877654
No 120
>PRK06202 hypothetical protein; Provisional
Probab=99.27 E-value=6.3e-11 Score=74.72 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=47.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc----C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (115)
.++.+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++.... ++.+...++..++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~l~~~ 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP--GVTFRQAVSDELVAE 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC--CCeEEEEeccccccc
Confidence 46679999999999998888742 2 248999999999999998876433 455666666555543
No 121
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.25 E-value=6.7e-11 Score=79.69 Aligned_cols=61 Identities=28% Similarity=0.403 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~ 108 (115)
++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++++..++. +++++++|+.++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~ 283 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL 283 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH
Confidence 6789999999999999887766667999999999999999999988775 689999998654
No 122
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2e-11 Score=82.93 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcc
Q 033605 26 YPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCD 104 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d 104 (115)
|+++....+.+...+.++.....+..++|+.||||.+++.+++. .++|+|+|+++.++.-|+.++..+++ |++|++|-
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 45566667777777778888888899999999999999999875 66999999999999999999999999 99999995
Q ss_pred ccC
Q 033605 105 IRN 107 (115)
Q Consensus 105 ~~~ 107 (115)
+++
T Consensus 440 aE~ 442 (534)
T KOG2187|consen 440 AED 442 (534)
T ss_pred hhh
Confidence 554
No 123
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=7.3e-11 Score=81.30 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc--CCcccC
Q 033605 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR--NLEWRG 112 (115)
Q Consensus 38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~--~~~~~~ 112 (115)
..++..+...++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.++..... ..+++++++|+. .+++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH-YKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc-CCceEEEEecccccccCCCC
Confidence 344444444466799999999999999999764 4999999999999887654322 227899999986 355553
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=9e-11 Score=80.31 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...+. +++++++|+..++
T Consensus 247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~ 314 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS 314 (445)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc
Confidence 4457789999999999999888853 245999999999999999999998887 7999999998765
No 125
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=9.4e-11 Score=80.20 Aligned_cols=66 Identities=27% Similarity=0.351 Sum_probs=57.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
.+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...+. +++++++|+.++
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~ 313 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKV 313 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccc
Confidence 334457789999999999999999864 356999999999999999999998887 799999999775
No 126
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.23 E-value=5.4e-11 Score=73.42 Aligned_cols=75 Identities=29% Similarity=0.465 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCC--CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc-cCCc
Q 033605 33 ASRMLYTAENSFGDV--SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI-RNLE 109 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~--~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~ 109 (115)
...+.+..++.+..+ ++.-|||||||+|..+..+...+. ..+|+|||+.|++.|.+.--+ -.++.+|+ +.+|
T Consensus 33 Q~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~Glp 107 (270)
T KOG1541|consen 33 QAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE----GDLILCDMGEGLP 107 (270)
T ss_pred hHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh----cCeeeeecCCCCC
Confidence 333444444433333 466899999999999999987765 899999999999999974332 24666665 5666
Q ss_pred ccC
Q 033605 110 WRG 112 (115)
Q Consensus 110 ~~~ 112 (115)
|++
T Consensus 108 frp 110 (270)
T KOG1541|consen 108 FRP 110 (270)
T ss_pred CCC
Confidence 665
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=1.1e-10 Score=79.54 Aligned_cols=67 Identities=28% Similarity=0.290 Sum_probs=57.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
.+...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++....+.+++++++|+.+++
T Consensus 239 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~ 306 (427)
T PRK10901 239 LLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA 306 (427)
T ss_pred HcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch
Confidence 4455678899999999999999998653 369999999999999999999988877889999997653
No 128
>PRK04148 hypothetical protein; Provisional
Probab=99.23 E-value=1.6e-10 Score=66.63 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEW 110 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~ 110 (115)
+.+.+.+.++..++.++||+|||+|. .+..+++.+. +|+++|+++.+++.++++. ++++.+|+.+-++
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~------~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG------LNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC------CeEEECcCCCCCH
Confidence 34455566655567899999999996 7777877765 9999999999998887763 5788888766443
No 129
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.20 E-value=3.4e-10 Score=70.63 Aligned_cols=71 Identities=28% Similarity=0.505 Sum_probs=56.5
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
.......++.+|||+|||+|..+..+++... .+++++|+++.+++.++++.. ...++.++.+|+.+.++++
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCC
Confidence 3333444778999999999999999986543 589999999999999998876 3337899999998877643
No 130
>PLN02672 methionine S-methyltransferase
Probab=99.20 E-value=1.3e-10 Score=85.67 Aligned_cols=82 Identities=22% Similarity=0.270 Sum_probs=63.9
Q ss_pred CCCchhhHHHHHHHHHHhcCC--CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccC-------
Q 033605 26 YPTGPHIASRMLYTAENSFGD--VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE------- 95 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~------- 95 (115)
...|+..++.+++. +...+. .++.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|++|...++
T Consensus 95 VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~ 173 (1082)
T PLN02672 95 IFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP 173 (1082)
T ss_pred cccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence 55677788888877 333221 13568999999999999999964 45699999999999999999987642
Q ss_pred ---------C-ceeEEEccccCC
Q 033605 96 ---------L-DIDFVQCDIRNL 108 (115)
Q Consensus 96 ---------~-~v~~~~~d~~~~ 108 (115)
. +++++++|+.+.
T Consensus 174 ~~~~~~~~l~~rV~f~~sDl~~~ 196 (1082)
T PLN02672 174 VYDGEGKTLLDRVEFYESDLLGY 196 (1082)
T ss_pred ccccccccccccEEEEECchhhh
Confidence 1 689999998653
No 131
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=1.5e-10 Score=78.92 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=57.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 44 FGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
....++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++...+. +++++++|+..++
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~ 301 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT 301 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh
Confidence 34557789999999999999999864 346999999999999999999998887 7899999988765
No 132
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.20 E-value=5.6e-11 Score=70.82 Aligned_cols=58 Identities=40% Similarity=0.484 Sum_probs=48.9
Q ss_pred CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 108 (115)
.+|+|+.||.|..++.+|+. ..+|+++|+++..+..++.|+.-+|. +++++++|+.++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~ 60 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL 60 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence 37999999999999999987 44999999999999999999999987 899999998654
No 133
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=1e-10 Score=70.99 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC-Cc-ccCCC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN-LE-WRGKY 114 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~f 114 (115)
++.+|||+|||.|.+...+.+.......|+|++++.+..|.++ .+.++++|+++ ++ +++..
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCCC
Confidence 7789999999999999999875567999999999998887765 36788998853 32 55443
No 134
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.20 E-value=1.5e-10 Score=70.53 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=59.3
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcc
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCD 104 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d 104 (115)
++...+.+.++..+... ..++.++||+.||+|.++++++.+++.+|+.||.++.++...++|+...+. +++++.+|
T Consensus 23 PT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred CCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 44555556666655543 147899999999999999999999999999999999999999999998887 58888888
Q ss_pred c
Q 033605 105 I 105 (115)
Q Consensus 105 ~ 105 (115)
+
T Consensus 101 ~ 101 (183)
T PF03602_consen 101 A 101 (183)
T ss_dssp H
T ss_pred H
Confidence 5
No 135
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2e-10 Score=74.08 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccc
Q 033605 37 LYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDI 105 (115)
Q Consensus 37 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~ 105 (115)
.+.+++.++...+.+|||+|||.|.+++.+++. +..+++.+|++..+++.++++...++. +..++..|.
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL 217 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc
Confidence 445566666666679999999999999999975 468999999999999999999998877 445555554
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.19 E-value=1.4e-10 Score=83.19 Aligned_cols=60 Identities=27% Similarity=0.236 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~ 107 (115)
++.+|||+|||+|.+++.++..+..+|+++|+|+.+++.+++|+..++. +++++++|+.+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~ 600 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLA 600 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHH
Confidence 5789999999999999999987777899999999999999999988765 58999999754
No 137
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=1.7e-10 Score=72.25 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh-------------ccCCcee
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA-------------DLELDID 99 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~~~~~v~ 99 (115)
...+.+.+.. ....++.+||.+|||.|.-...+++.+. +|+|+|+|+.+++.+.+... ..+.+++
T Consensus 29 np~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 29 NEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 3334444332 2334567999999999999999999877 79999999999999866321 1133799
Q ss_pred EEEccccCCcc
Q 033605 100 FVQCDIRNLEW 110 (115)
Q Consensus 100 ~~~~d~~~~~~ 110 (115)
++++|+.+++.
T Consensus 107 ~~~gD~f~l~~ 117 (226)
T PRK13256 107 IYVADIFNLPK 117 (226)
T ss_pred EEEccCcCCCc
Confidence 99999998864
No 138
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.18 E-value=1.7e-10 Score=71.05 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=50.3
Q ss_pred CeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 50 KVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
..+||||||.|.+...+|. ++...++|+|+....+..+..+....+. |+.++++|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 3999999999999999995 6678999999999999999999998888 99999999876
No 139
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.18 E-value=2.3e-10 Score=71.66 Aligned_cols=63 Identities=30% Similarity=0.460 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCccc
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWR 111 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~ 111 (115)
++.+|||+|||+|.++..+++.+. +++++|+++.++..++.+....+. ++.+.+.|+.+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK 108 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC
Confidence 578999999999999998887644 799999999999999998877766 689999998776643
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.17 E-value=1.3e-10 Score=73.41 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 108 (115)
.++.+|||+|||+|+.++.++.. +..+++++|+++++++.|++++...+. +++++.+|+.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 46789999999999999888853 346999999999999999999998887 799999998653
No 141
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=3.7e-10 Score=77.14 Aligned_cols=68 Identities=25% Similarity=0.284 Sum_probs=58.5
Q ss_pred HhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 42 NSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
..+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++....+. +++++++|+.+++
T Consensus 246 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~ 316 (434)
T PRK14901 246 PLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL 316 (434)
T ss_pred HHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc
Confidence 3345557889999999999999999864 235999999999999999999999888 8999999998765
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.16 E-value=3.8e-10 Score=69.42 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.+|||+|||+|.++..+++.....++|+|+++.++..++++ +++++++|+.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~ 66 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDE 66 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhh
Confidence 5679999999999999988765455889999999999988652 46788888865
No 143
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.15 E-value=2.5e-10 Score=74.09 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+++.+++.+...++.++||.+||.|..+..+++.. ..+|+|+|.++.+++.++++... ..+++++++|+.++.
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 44555566555677899999999999999999753 36999999999999999998766 338999999987653
No 144
>PLN03075 nicotianamine synthase; Provisional
Probab=99.15 E-value=8.6e-10 Score=71.46 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=50.6
Q ss_pred CCCCCCeEEEEcCCCChHHHH-HH-h-cCCCeEEEEeCChhHHHHHHHHhhc-cCC--ceeEEEccccCCc
Q 033605 45 GDVSNKVVADFGCGCGTLGAA-AT-L-LGADQVIAIDIDSDSLELASENAAD-LEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~-~~-~-~~~~~v~~vD~s~~~~~~a~~~~~~-~~~--~v~~~~~d~~~~~ 109 (115)
....+++|+|+|||.|.++.. ++ . .+..+++|+|+++++++.|++.+.. .+. +++|.++|+.+.+
T Consensus 120 ~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 120 VNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred hcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 334788999999998855333 33 3 3556899999999999999999854 454 6999999998754
No 145
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.15 E-value=3.4e-10 Score=72.73 Aligned_cols=65 Identities=12% Similarity=0.144 Sum_probs=56.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
...++.+|||+|||+|..+..+++. +...|+++|+++.+++.+++++...+. ++++++.|+..++
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 135 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG 135 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh
Confidence 4457789999999999999998863 235899999999999999999998887 8999999987654
No 146
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.14 E-value=3.1e-12 Score=70.57 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=37.7
Q ss_pred EEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEc
Q 033605 53 ADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL-DIDFVQC 103 (115)
Q Consensus 53 LDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~ 103 (115)
||+|||+|.++..+++. +..+++|+|+|+.|++.++++...... +...+..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~ 53 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRF 53 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEe
Confidence 79999999999999864 567999999999999888888877664 3333333
No 147
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.11 E-value=1.4e-09 Score=74.34 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=51.4
Q ss_pred CCeEEEEcCCCChHHHHHHhcC-----CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCC
Q 033605 49 NKVVADFGCGCGTLGAAATLLG-----ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~-----~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 113 (115)
+..|+|+|||+|-++...++.+ ..+|++||.++.+...+++++..++. +|+++++|++++.++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCc
Confidence 5789999999999988776543 57999999999999888777555554 89999999999998864
No 148
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=5.2e-10 Score=69.61 Aligned_cols=61 Identities=26% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 38 YTAENSFG-DVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 38 ~~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
..+...+. ..++.+|||+|||+|.++..+++.. ...|+|+|+++ |. .. .+++++++|+.+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~-~~v~~i~~D~~~~ 103 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PI-VGVDFLQGDFRDE 103 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CC-CCcEEEecCCCCh
Confidence 33444444 3567799999999999999998652 35999999998 21 01 1678888888774
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.08 E-value=6.3e-10 Score=69.81 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
....+||||||.|.+...+|+ .+...++|||+....+..|.+.+.+.++ |+.++++|+..
T Consensus 48 ~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~ 109 (227)
T COG0220 48 NAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE 109 (227)
T ss_pred CCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 346899999999999999995 5678999999999999999999999999 99999999854
No 150
>PRK04457 spermidine synthase; Provisional
Probab=99.08 E-value=4.8e-10 Score=71.93 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~ 107 (115)
.++.+|||+|||+|.++..+++ .+..+++++|+++++++.|++++...+ .+++++.+|+.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~ 128 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE 128 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH
Confidence 3567999999999999999885 456799999999999999999876443 379999999754
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.06 E-value=7.5e-10 Score=68.61 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (115)
.-+++..++.. .++.+|||+||++|+.++.+++. + ..+|+.+|++++..+.|++++...+. +++++.+|+.+
T Consensus 33 ~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 33 TGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred HHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 33445544443 37789999999999999999963 3 46999999999999999999998877 89999999854
No 152
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.06 E-value=2.2e-09 Score=67.44 Aligned_cols=53 Identities=30% Similarity=0.402 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHH
Q 033605 34 SRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (115)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~ 86 (115)
...+..+++.++. .++.++||+|||+|.++..+++.+..+|+|+|+++.|+..
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3344455555443 4677999999999999999998877899999999987765
No 153
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.05 E-value=2.1e-09 Score=73.31 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=54.9
Q ss_pred HHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCc--eeEEEccccCCc
Q 033605 41 ENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELD--IDFVQCDIRNLE 109 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~--v~~~~~d~~~~~ 109 (115)
...+...++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++...+.+ +.+..+|....+
T Consensus 231 ~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 231 ATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred HHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 33445567889999999999999999864 4469999999999999999999988774 444667765543
No 154
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.04 E-value=1.9e-09 Score=69.28 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=47.6
Q ss_pred CCCCeEEEEcCCCCh----HHHHHHhc-C-----CCeEEEEeCChhHHHHHHHHhhc-----------------------
Q 033605 47 VSNKVVADFGCGCGT----LGAAATLL-G-----ADQVIAIDIDSDSLELASENAAD----------------------- 93 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~----~~~~~~~~-~-----~~~v~~vD~s~~~~~~a~~~~~~----------------------- 93 (115)
.++.+|||+|||+|. +++.+++. + ..+|+|+|+|+.|++.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999997 34444432 1 24899999999999999985310
Q ss_pred -----cCCceeEEEccccCCccc
Q 033605 94 -----LELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 94 -----~~~~v~~~~~d~~~~~~~ 111 (115)
...+|.|.++|+.+.+++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~ 200 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPP 200 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCc
Confidence 001689999999987764
No 155
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=1e-09 Score=67.26 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-cee-EEEccccCCc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DID-FVQCDIRNLE 109 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~-~~~~d~~~~~ 109 (115)
....-|||+|||+|..-...--.+..+||++|+++.|-+.+.+.+.+..- ++. |+.++.+++|
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~ 139 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP 139 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc
Confidence 33446899999999987766544567999999999999999999887654 787 9999999998
No 156
>PRK00811 spermidine synthase; Provisional
Probab=99.03 E-value=1.1e-09 Score=71.04 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc------CCceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL------ELDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~v~~~~~d~~~ 107 (115)
.++.+||++|||.|..+.+++++ +..+|+++|+++.+++.|++.+... ..+++++.+|+..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~ 142 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK 142 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH
Confidence 36789999999999999999876 4579999999999999999987642 2278999999765
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.01 E-value=2.5e-09 Score=70.27 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc-CC--ceeEEE
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQ 102 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~--~v~~~~ 102 (115)
++.++||||||+|.+...++. ....+++|+|+++.+++.|+.++..+ +. +++++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~ 172 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRL 172 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEE
Confidence 457999999999988777764 44569999999999999999999988 45 677754
No 158
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.01 E-value=2.7e-09 Score=66.74 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-c-----------CC-cee
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD-L-----------EL-DID 99 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-----------~~-~v~ 99 (115)
...+.+.+.. ....++.+||.+|||.|.-...+++.+. +|+|+|+|+.+++.+.+.... . .. +|+
T Consensus 23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 3333433333 3445667999999999999999998876 999999999999998443221 0 11 579
Q ss_pred EEEccccCCccc
Q 033605 100 FVQCDIRNLEWR 111 (115)
Q Consensus 100 ~~~~d~~~~~~~ 111 (115)
++++|+.+++..
T Consensus 101 ~~~gDfF~l~~~ 112 (218)
T PF05724_consen 101 IYCGDFFELPPE 112 (218)
T ss_dssp EEES-TTTGGGS
T ss_pred EEEcccccCChh
Confidence 999999887643
No 159
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.01 E-value=1.6e-09 Score=72.82 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHhcCCC-CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 31 HIASRMLYTAENSFGDV-SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
...+.+...+.+.+... .+.+|||++||+|..++.++. .+..+|+++|+++.+++.+++|+..++. ++++.++|+..
T Consensus 39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~ 118 (382)
T PRK04338 39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA 118 (382)
T ss_pred cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence 33444444444433322 246899999999999999985 4556999999999999999999988877 67899999865
Q ss_pred C
Q 033605 108 L 108 (115)
Q Consensus 108 ~ 108 (115)
+
T Consensus 119 ~ 119 (382)
T PRK04338 119 L 119 (382)
T ss_pred H
Confidence 3
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.01 E-value=9.1e-09 Score=62.48 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=56.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (115)
..+.++||+.+|+|.++++.+..++..++.+|.+..++..+++|....+. +++++..|+.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 58899999999999999999999999999999999999999999998884 8899988886
No 161
>PLN02476 O-methyltransferase
Probab=99.01 E-value=3.2e-09 Score=68.39 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (115)
.++++|||+|+|+|+.++.++.. + ..+++++|.++++.+.|++++...+. +++++.+|+.+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 46789999999999999999863 2 45899999999999999999999888 79999999854
No 162
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.00 E-value=1.7e-09 Score=66.72 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW 110 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 110 (115)
.++.+|+|+.||.|.+++.+++. ..+.|+++|++|.+++.+++++..++. ++.++++|+.++..
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 37889999999999999999973 456899999999999999999998887 68999999987754
No 163
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=4.8e-09 Score=66.13 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
-.-.+.......++.+|||.|.|+|.++..++. . +..+|+..|+.++.++.|++|+...+. ++++..+|+.+.-.+
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 344556666888999999999999999999995 3 337999999999999999999999777 499999998776655
Q ss_pred C
Q 033605 112 G 112 (115)
Q Consensus 112 ~ 112 (115)
+
T Consensus 162 ~ 162 (256)
T COG2519 162 E 162 (256)
T ss_pred c
Confidence 4
No 164
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.99 E-value=2.5e-09 Score=63.47 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHH
Q 033605 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLEL 86 (115)
Q Consensus 46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~ 86 (115)
..++.+|||+|||+|.++..++..+. +++|+|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh
Confidence 35788999999999999999987766 99999999999987
No 165
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.98 E-value=3.3e-09 Score=57.89 Aligned_cols=59 Identities=34% Similarity=0.501 Sum_probs=48.1
Q ss_pred eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
+++|+|||.|..+..++.....+++++|+++.++..+++....... ++.++.+|+.+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc
Confidence 5899999999999998875567999999999999998854433333 7889999887765
No 166
>PTZ00146 fibrillarin; Provisional
Probab=98.97 E-value=5e-09 Score=67.78 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=47.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 44 FGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+...++.+|||+|||+|.++..++.. + ...|+++|+++.+.+.....+... .|+.++.+|+..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~ 192 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARY 192 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccC
Confidence 34567889999999999999999975 2 358999999997664444443322 278888888754
No 167
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.96 E-value=1.1e-08 Score=63.49 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=56.2
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhc-------cCC---
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAAD-------LEL--- 96 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~-------~~~--- 96 (115)
...+.....+..+++..+..++++++|||||.|.....++ ..+..+.+|||+.+...+.|+..... .+.
T Consensus 22 ~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~ 101 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPG 101 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---
T ss_pred ceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4456666777777777777788999999999999988877 56676799999999998777654332 232
Q ss_pred ceeEEEccccCCc
Q 033605 97 DIDFVQCDIRNLE 109 (115)
Q Consensus 97 ~v~~~~~d~~~~~ 109 (115)
++++.++|+.+.+
T Consensus 102 ~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 102 KVELIHGDFLDPD 114 (205)
T ss_dssp EEEEECS-TTTHH
T ss_pred cceeeccCccccH
Confidence 6888899987654
No 168
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=5.3e-09 Score=64.97 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=76.6
Q ss_pred hhhhhhhhcccCCCCccccccCCCchhhHHHHHHHHHHhcCCCC--CCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCCh
Q 033605 5 QLESVLGDLEQFSNPKVELEQYPTGPHIASRMLYTAENSFGDVS--NKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDS 81 (115)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~ 81 (115)
+++.+.+.+..|.. ..+.....+..+.-.+.+...+...+... +.+++|||+|.|.-++.++ .++..+|+-+|...
T Consensus 23 ~l~~Y~~lL~~wN~-~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~ 101 (215)
T COG0357 23 KLEAYVELLLKWNK-AYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG 101 (215)
T ss_pred HHHHHHHHHHHhhH-hcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc
Confidence 44555555555554 33444444454444443333333333333 6899999999999999988 56666899999999
Q ss_pred hHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605 82 DSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 82 ~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 112 (115)
..+...+....+.+. |++++++.+|++....
T Consensus 102 Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~ 133 (215)
T COG0357 102 KKIAFLREVKKELGLENVEIVHGRAEEFGQEK 133 (215)
T ss_pred hHHHHHHHHHHHhCCCCeEEehhhHhhccccc
Confidence 999999999999999 7999999999887543
No 169
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.96 E-value=1.9e-08 Score=63.95 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=57.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW 110 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 110 (115)
-+..++......++.+|||.|.|+|.++..+++. +..+|+..|+.+++++.|++++...+. ++++.+.|+.+.-+
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 3445556667789999999999999999999963 456999999999999999999999887 79999999865333
No 170
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.94 E-value=2.2e-09 Score=66.34 Aligned_cols=76 Identities=30% Similarity=0.377 Sum_probs=61.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
++......+........ ....|+|..||.|..++.++..+. .|+++|++|.-+..|++|+.-+|+ +|+|++||+
T Consensus 77 Tpe~ia~~iA~~v~~~~---~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ 152 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACM---NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDF 152 (263)
T ss_pred ccHHHHHHHHHHHHHhc---CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechH
Confidence 45555555555544432 566899999999999998887755 999999999999999999999998 899999998
Q ss_pred cC
Q 033605 106 RN 107 (115)
Q Consensus 106 ~~ 107 (115)
.+
T Consensus 153 ld 154 (263)
T KOG2730|consen 153 LD 154 (263)
T ss_pred HH
Confidence 64
No 171
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.92 E-value=5.5e-09 Score=61.15 Aligned_cols=57 Identities=26% Similarity=0.346 Sum_probs=47.7
Q ss_pred eEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 51 VVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
++||+|||.|..+..+++... .+++++|+++.++..++++...++. ++.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 589999999999999987543 4899999999999999999887765 67777766543
No 172
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.92 E-value=8.9e-09 Score=63.06 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=40.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
...++.+|||+|||+|.++..++.. +..+|+++|+++.+ .. .+++++++|+.+.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~-~~i~~~~~d~~~~ 84 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI-ENVDFIRGDFTDE 84 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC-CCceEEEeeCCCh
Confidence 3357889999999999999988853 34589999999965 01 1567777787653
No 173
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.91 E-value=2.3e-08 Score=62.36 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEE-ccc
Q 033605 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQ-CDI 105 (115)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~-~d~ 105 (115)
+.+-.++..+... ..++++||+|++.|+.++.++. .+ ..+++++|+++++.+.|++++.+.+. +++.+. +|+
T Consensus 45 ~e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 4444455544433 4788999999999999999995 34 46999999999999999999999988 577777 465
Q ss_pred c
Q 033605 106 R 106 (115)
Q Consensus 106 ~ 106 (115)
.
T Consensus 122 l 122 (219)
T COG4122 122 L 122 (219)
T ss_pred H
Confidence 3
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=1.3e-09 Score=67.88 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=40.0
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~ 91 (115)
++.......-.++||+|||||..+..+-.. ..+++|+|||..|++.|.++-
T Consensus 117 mI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg 167 (287)
T COG4976 117 MIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG 167 (287)
T ss_pred HHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc
Confidence 333334334579999999999999988655 458999999999999988753
No 175
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=8.3e-09 Score=68.08 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
++.+|+|..+|.|.+++.++.++...|+++|++|.+++.+++|+..++. .++.++||+.+....
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence 6889999999999999999998776799999999999999999999888 489999999877655
No 176
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.89 E-value=1.3e-08 Score=59.66 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-----cCCCeEEEEeCChhHHHHHHHHhhccC--C--ceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATL-----LGADQVIAIDIDSDSLELASENAADLE--L--DIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~v~~~~~d~~~ 107 (115)
.+..+|+|+|||.|+++..++. ....+|+++|.++...+.+..+..... . ++.+..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 5678999999999999999987 556799999999999999998887765 2 56666665543
No 177
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.88 E-value=1.4e-08 Score=61.56 Aligned_cols=64 Identities=31% Similarity=0.442 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 112 (115)
..+.+.|+|+|+|.+++..+.. +.+|+++|.+|.....|++|..-.+. |++++.+|+.++.|+.
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ 96 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFEN 96 (252)
T ss_pred hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccc
Confidence 4479999999999999998877 66999999999999999999877777 9999999999999853
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.88 E-value=3e-08 Score=60.08 Aligned_cols=61 Identities=30% Similarity=0.325 Sum_probs=44.1
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccC----CceeEEEccccC
Q 033605 46 DVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLE----LDIDFVQCDIRN 107 (115)
Q Consensus 46 ~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~ 107 (115)
..++.+|||||||+|..++.++.. +..+|+..|.++ .++.++.|+..++ .++.+...|..+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD 108 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence 457889999999999999999976 677999999999 9999999988765 277777777644
No 179
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=68.30 Aligned_cols=78 Identities=28% Similarity=0.290 Sum_probs=62.8
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEcc
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCD 104 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d 104 (115)
+......+..+..+... .++++|||+.|=||.++++++..++.+||+||+|..+++.|++|..-++. ++.++++|
T Consensus 199 TGfFlDqR~~R~~l~~~--~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~D 276 (393)
T COG1092 199 TGFFLDQRDNRRALGEL--AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGD 276 (393)
T ss_pred ceeeHHhHHHHHHHhhh--ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhh
Confidence 33344444444444432 25899999999999999999998888999999999999999999998886 58999999
Q ss_pred ccC
Q 033605 105 IRN 107 (115)
Q Consensus 105 ~~~ 107 (115)
+.+
T Consensus 277 vf~ 279 (393)
T COG1092 277 VFK 279 (393)
T ss_pred HHH
Confidence 743
No 180
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.85 E-value=3.7e-08 Score=70.98 Aligned_cols=84 Identities=21% Similarity=0.213 Sum_probs=62.9
Q ss_pred CchhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhc-------------------------------------
Q 033605 28 TGPHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLL------------------------------------- 69 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~------------------------------------- 69 (115)
.+....+.+...++....- .++..++|.+||+|.+.++.+..
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 3334445555555544332 35679999999999999887641
Q ss_pred ------CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 70 ------GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 70 ------~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
...+++|+|+++.++..|+.|+...+. .+++.++|+.+++.+
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~ 298 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP 298 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc
Confidence 012699999999999999999999887 589999999887654
No 181
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=4.3e-08 Score=65.33 Aligned_cols=89 Identities=25% Similarity=0.264 Sum_probs=68.1
Q ss_pred cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCC--C----------------------------
Q 033605 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGA--D---------------------------- 72 (115)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~--~---------------------------- 72 (115)
|..+..+.+.-+.+...++....-.++..++|.-||+|.+.++.+.... +
T Consensus 166 yR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 166 YRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 3334445555555666666554545667999999999999999885321 1
Q ss_pred ----------eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 73 ----------QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 73 ----------~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
.++|+|+++.+++.|+.|+...+. .|+|.++|+..++-+
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~ 296 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP 296 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC
Confidence 377999999999999999999988 699999999887755
No 182
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.84 E-value=1.5e-08 Score=66.96 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-----------CCceeEEEccccCCcc
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL-----------ELDIDFVQCDIRNLEW 110 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~v~~~~~d~~~~~~ 110 (115)
++.+|||+|||.|.-.......+...++|+|+++..++.|+++.... .....++.+|.....+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchh
Confidence 66899999999999777777666789999999999999999998211 1256778888765443
No 183
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.83 E-value=2.5e-08 Score=60.86 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred chhhhhhhhcccCCCCccccccCCCchhhHHH-HHHHHHHhcCCCCCC-eEEEEcCCCChHHHHHH-hcCCCeEEEEeCC
Q 033605 4 KQLESVLGDLEQFSNPKVELEQYPTGPHIASR-MLYTAENSFGDVSNK-VVADFGCGCGTLGAAAT-LLGADQVIAIDID 80 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s 80 (115)
..++.+.+.+..|.. ..+..........-.+ +++.+.-..-..... +++|+|+|.|.-++.++ -.+..+++.+|..
T Consensus 3 ~~l~~y~~lL~~~N~-~~NLt~~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~ 81 (184)
T PF02527_consen 3 EKLEQYLELLLEWNK-KINLTSIRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESV 81 (184)
T ss_dssp HHHHHHHHHHHHHHH-CSSS-S--SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCc-eeeeccCCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCC
Confidence 345555555555543 3333334444444433 334433222222223 79999999999999988 4667799999999
Q ss_pred hhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 81 SDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 81 ~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
...+...+......+. |++++++.+++
T Consensus 82 ~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 82 GKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp HHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred chHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 9999999999999998 89999999988
No 184
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.6e-08 Score=59.42 Aligned_cols=60 Identities=25% Similarity=0.426 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~ 106 (115)
..+..++|+|||+|..+..+++. +...+.++|++|.+++..++-+..++.+++.++.|+.
T Consensus 42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~ 103 (209)
T KOG3191|consen 42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL 103 (209)
T ss_pred cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH
Confidence 35789999999999999988853 4568899999999999988888888878888888763
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.82 E-value=2.5e-08 Score=63.43 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~ 107 (115)
.++.+|||+|+++|+.++.++.. ...+++++|.+++..+.|++++...+. +++++.+|+.+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence 46789999999999999999863 246999999999999999999998886 89999998755
No 186
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.82 E-value=4.8e-08 Score=63.32 Aligned_cols=74 Identities=28% Similarity=0.292 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN 107 (115)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~ 107 (115)
...+..+..+... .++++|||+.|-+|.+++.++..++.+|++||.|..+++.+++|...++. ++++++.|+.+
T Consensus 109 lDqR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~ 185 (286)
T PF10672_consen 109 LDQRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK 185 (286)
T ss_dssp GGGHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred HHHHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH
Confidence 3344444444332 36789999999999999998888788999999999999999999988875 78999999754
No 187
>PLN02366 spermidine synthase
Probab=98.81 E-value=2.2e-08 Score=65.60 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~ 107 (115)
.++.+||++|||.|....++++++ ..+|+.+|+++.+++.|++.+... +.+++++.+|+..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 467899999999999999999874 468999999999999999987542 2279999999643
No 188
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.79 E-value=4.7e-08 Score=65.62 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 49 NKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
+.+|||+.||+|..++.++.. +..+|+++|+++.+++.+++|+..++. +++++++|+..+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~ 107 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV 107 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH
Confidence 358999999999999999965 567999999999999999999988877 688999887644
No 189
>PRK03612 spermidine synthase; Provisional
Probab=98.77 E-value=2.4e-08 Score=69.73 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHh--hc-----cC-CceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENA--AD-----LE-LDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~--~~-----~~-~~v~~~~~d~~~ 107 (115)
.++++|||+|||+|..+.++++++. .+++++|+++++++.++++. .. .. .+++++.+|+.+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 4678999999999999999988754 79999999999999999842 21 11 278999999865
No 190
>PRK01581 speE spermidine synthase; Validated
Probab=98.73 E-value=3.5e-08 Score=65.66 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHh--h-----cc-CCceeEEEccccCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENA--A-----DL-ELDIDFVQCDIRNL 108 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~--~-----~~-~~~v~~~~~d~~~~ 108 (115)
..+.+||++|||.|..+..+++++ ..+|+++|+++++++.|++.. . .. +.+++++.+|+.++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f 219 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF 219 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH
Confidence 467799999999999998888764 479999999999999999621 1 11 22889999887653
No 191
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.72 E-value=1.4e-07 Score=61.92 Aligned_cols=85 Identities=25% Similarity=0.295 Sum_probs=58.6
Q ss_pred cccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh--------cCCCeEEEEeCChhHHHHHHHHhh
Q 033605 21 VELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL--------LGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~--------~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
....+|.+|..+..-++..+ ...++.+|+|.+||+|.+...+.+ ....+++|+|+++.++..|+.++.
T Consensus 23 k~~G~~~TP~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp TSCGGC---HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred cccceeehHHHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34557888988887777665 334677899999999999888775 245699999999999999988776
Q ss_pred ccCC---ceeEEEccccCCc
Q 033605 93 DLEL---DIDFVQCDIRNLE 109 (115)
Q Consensus 93 ~~~~---~v~~~~~d~~~~~ 109 (115)
-.+. +..+.++|....+
T Consensus 99 l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSH
T ss_pred hhcccccccccccccccccc
Confidence 5554 3457888865444
No 192
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.72 E-value=7.5e-08 Score=67.36 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=62.1
Q ss_pred cccCCCchhhHHHHHHHHHHhcCC---CCCCeEEEEcCCCChHHHHHHhcC---------CCeEEEEeCChhHHHHHHHH
Q 033605 23 LEQYPTGPHIASRMLYTAENSFGD---VSNKVVADFGCGCGTLGAAATLLG---------ADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDlG~G~G~~~~~~~~~~---------~~~v~~vD~s~~~~~~a~~~ 90 (115)
..+|.+|..+...+++.+...... ....+|||+|||+|.+...++... ..+++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 457889999999999887654321 145689999999999998887421 14789999999999999998
Q ss_pred hhccCC-ceeEEEccc
Q 033605 91 AADLEL-DIDFVQCDI 105 (115)
Q Consensus 91 ~~~~~~-~v~~~~~d~ 105 (115)
+...+. .+.+.+.|.
T Consensus 83 l~~~~~~~~~i~~~d~ 98 (524)
T TIGR02987 83 LGEFALLEINVINFNS 98 (524)
T ss_pred HhhcCCCCceeeeccc
Confidence 776552 445555553
No 193
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=2.9e-08 Score=62.21 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=59.9
Q ss_pred cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C--CCeEEEEeCChhHHHHHHHHhhccCCcee
Q 033605 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G--ADQVIAIDIDSDSLELASENAADLELDID 99 (115)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~ 99 (115)
.+++...+++..+-...+...... .+.+|||+|||.|.....+.+. + .-.++++|.||.+++..+++......++.
T Consensus 47 ~~rFfkdR~wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~ 125 (264)
T KOG2361|consen 47 ENRFFKDRNWLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVE 125 (264)
T ss_pred cccccchhHHHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhc
Confidence 344566666666666655544222 2338999999999999998853 2 25899999999999999998776555565
Q ss_pred EEEccccCC
Q 033605 100 FVQCDIRNL 108 (115)
Q Consensus 100 ~~~~d~~~~ 108 (115)
....|+..-
T Consensus 126 afv~Dlt~~ 134 (264)
T KOG2361|consen 126 AFVWDLTSP 134 (264)
T ss_pred ccceeccch
Confidence 555665443
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.71 E-value=4.3e-08 Score=58.36 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=52.8
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+.......++..|||+|.|+|-++..+++++ ...++++|+|++......+.... +.++.||+.++.
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~----~~ii~gda~~l~ 107 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG----VNIINGDAFDLR 107 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC----ccccccchhhHH
Confidence 3333345578899999999999999999764 46999999999999999887764 557888876655
No 195
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.67 E-value=1.3e-07 Score=61.06 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccC-----CceeEEEcccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDIR 106 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~~ 106 (115)
.++.+||++|||+|..+..+++.. ..+++++|+++.+++.+++.+...+ .+++++.+|+.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~ 136 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF 136 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence 356699999999999999888764 5689999999999999999765421 26777777764
No 196
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.65 E-value=5.9e-08 Score=60.88 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=36.7
Q ss_pred eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
.++|+|||+|..++.++.+ ..+|+|+|+|+.|++.+++....
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~ 77 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPV 77 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCc
Confidence 8999999999878888777 55999999999999999886654
No 197
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.62 E-value=9.9e-08 Score=60.00 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=43.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 47 VSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
..+.-+|||||.+|.++..+++ +++..++|+||++..++.|++.....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 4678899999999999999996 67789999999999999999987754
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.60 E-value=1.9e-07 Score=65.13 Aligned_cols=59 Identities=12% Similarity=0.165 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
....+||||||.|.+...+|. ++...++|+|+....+..+.......+. |+.++++|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~ 407 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLD 407 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence 467899999999999999995 5668999999999999998888877777 8988888874
No 199
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.60 E-value=8.1e-07 Score=56.39 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 38 YTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 38 ~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
..+..........+|+|||+|.|.++..+++ ++..+++..|. |..++.+++ ..+++++.+|+. -++|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc
Confidence 3445555555667999999999999999995 67789999999 778888888 228999999997 45553
No 200
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=1.2e-07 Score=57.82 Aligned_cols=72 Identities=31% Similarity=0.341 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+.+.+..+-...++++|||+|+|+|..++..++.+.+.|++.|+.|-.....+-|...++.++.++..|...
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g 138 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG 138 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC
Confidence 344455554455789999999999999999999999999999999999999999998888889998888765
No 201
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.56 E-value=6.1e-07 Score=58.68 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++.+++.+...++..++|.-+|.|..+..+++. +..+|+|+|.++.++..++++...++.+++++++++.++
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l 81 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF 81 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence 4455555555567789999999999999999964 347999999999999999998876655899999887764
No 202
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.55 E-value=7.8e-07 Score=61.44 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
...++.+|||+++|.|.-+..++.. +...++++|+++.+++.+++++...+. ++.+.+.|...+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~ 176 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF 176 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence 3457889999999999999999863 345899999999999999999999998 889998988765
No 203
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.48 E-value=3.2e-06 Score=54.70 Aligned_cols=62 Identities=23% Similarity=0.177 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-cC--CCeEEEEeCChhHHHHHHHHhhccCC-ce-eEEEccccCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRNL 108 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v-~~~~~d~~~~ 108 (115)
..+-+|||+.||.|+..+.+.. .+ ..+|...|+|+..++..++...+.+. ++ +|.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 4678999999999999988874 43 36999999999999999999999998 55 9999998653
No 204
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.46 E-value=2.8e-07 Score=60.18 Aligned_cols=60 Identities=27% Similarity=0.317 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-------ceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-------DIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------~v~~~~~d~~~ 107 (115)
+++.++|+|||.|.-.+..-..+...++|+||++..++.|+++...-.. .+.|+.+|...
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 6778999999999988888777778999999999999999998764321 47888888754
No 205
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.46 E-value=1.1e-06 Score=56.93 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=53.5
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccC
Q 033605 27 PTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLE 95 (115)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~ 95 (115)
+.......+++..+....+...+.+|||+|||+|.....+.. . ...+++++|.|+.|++.++.......
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 334455667777777777777899999999999987766654 2 34699999999999999988776543
No 206
>PRK11524 putative methyltransferase; Provisional
Probab=98.42 E-value=1.8e-06 Score=56.21 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
...+++.++.... .+++.|||..||+|..+....+.+. +.+|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3456666665533 4889999999999999998888766 999999999999999999753
No 207
>PLN02823 spermine synthase
Probab=98.42 E-value=1.1e-06 Score=58.32 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~~ 107 (115)
.+.+||.+|+|.|..+.+++++ +..+++++|+++.+++.|++.+... +.+++++.+|+..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~ 168 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA 168 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH
Confidence 5679999999999999998875 4579999999999999999987543 2278888888754
No 208
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=7.3e-07 Score=52.29 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCc
Q 033605 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLE 109 (115)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~ 109 (115)
.+.+.++.++..++..+..+.+|+|+|.|+.....++.+.-+-+|+|++|-.+..++-..-..++ ...|...|+.+.+
T Consensus 56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 34555666677767777789999999999999999988766889999999988888776666655 6778887877776
Q ss_pred ccC
Q 033605 110 WRG 112 (115)
Q Consensus 110 ~~~ 112 (115)
+.+
T Consensus 136 l~d 138 (199)
T KOG4058|consen 136 LRD 138 (199)
T ss_pred ccc
Confidence 654
No 209
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=98.37 E-value=2.1e-06 Score=53.64 Aligned_cols=54 Identities=28% Similarity=0.333 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
..+++.++.... .+++.|||..||+|..+....+.+. +.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 344444444433 3788999999999999999888766 89999999999999874
No 210
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.35 E-value=3.4e-06 Score=52.43 Aligned_cols=55 Identities=36% Similarity=0.370 Sum_probs=47.1
Q ss_pred EEEEcCCCChHHHHHHhcCC-CeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605 52 VADFGCGCGTLGAAATLLGA-DQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (115)
Q Consensus 52 vLDlG~G~G~~~~~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (115)
|.|+||--|++..++.+.+. .+++++|+++.-++.|++++...+. +++++.+|-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL 58 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL 58 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc
Confidence 68999999999999997654 5899999999999999999999886 7999999954
No 211
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.34 E-value=6.3e-06 Score=54.43 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-----CCCeEEEEeCChhHHHHHHHHhh-c-cC-CceeEEEcccc
Q 033605 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-----GADQVIAIDIDSDSLELASENAA-D-LE-LDIDFVQCDIR 106 (115)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~~-~-~~-~~v~~~~~d~~ 106 (115)
.....+...+ .++..++|+|||+|.-+..+++. ....++++|+|.++++.+..++. . .+ +.+.-+++|+.
T Consensus 65 ~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 65 KHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 3344455443 35668999999999987766531 13579999999999999999888 2 33 25666888874
Q ss_pred C
Q 033605 107 N 107 (115)
Q Consensus 107 ~ 107 (115)
+
T Consensus 143 ~ 143 (319)
T TIGR03439 143 D 143 (319)
T ss_pred H
Confidence 4
No 212
>PHA01634 hypothetical protein
Probab=98.34 E-value=2.1e-06 Score=49.10 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLE 95 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 95 (115)
++++|+|+|.+.|..+++++-.++++|+++|+++...+..+++...+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 788999999999999999998899999999999999999999877653
No 213
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.32 E-value=3.8e-06 Score=52.12 Aligned_cols=82 Identities=29% Similarity=0.303 Sum_probs=51.9
Q ss_pred hcccCCCCccccccCC---CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHH
Q 033605 12 DLEQFSNPKVELEQYP---TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLE 85 (115)
Q Consensus 12 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~ 85 (115)
+.+.|.....-++... .|-.....+++..+.......+-++.|.+||.|++...+.- ..-..|+|-|+++++++
T Consensus 12 ~y~DfAsG~VL~sApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~ 91 (246)
T PF11599_consen 12 DYEDFASGRVLYSAPGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALE 91 (246)
T ss_dssp --CCCSTTTSS--BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHH
T ss_pred ChhhhcCCeEEecCCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHH
Confidence 4444544444433322 23455677777777776666778999999999998666552 23469999999999999
Q ss_pred HHHHHhhc
Q 033605 86 LASENAAD 93 (115)
Q Consensus 86 ~a~~~~~~ 93 (115)
.|++|..-
T Consensus 92 lA~kNL~L 99 (246)
T PF11599_consen 92 LARKNLSL 99 (246)
T ss_dssp HHHHHHHC
T ss_pred HHHHhhhh
Confidence 99998754
No 214
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.31 E-value=1.7e-05 Score=52.61 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCCh
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDS 81 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~ 81 (115)
.++.++||+||++|.++..+++.+. +|++||..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 4788999999999999999999876 999999666
No 215
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.31 E-value=7.8e-06 Score=50.92 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=53.9
Q ss_pred CCCchhhHHHHHHHHHHhcCCC------CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC-ce
Q 033605 26 YPTGPHIASRMLYTAENSFGDV------SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL-DI 98 (115)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~------~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v 98 (115)
|..-.....+-.+.++..+... ...+.||.|+|.|+.+..++.....+|-.+|..+..++.|++....... -.
T Consensus 27 ~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~ 106 (218)
T PF05891_consen 27 FGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVG 106 (218)
T ss_dssp -GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEE
T ss_pred CCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcc
Confidence 3333334444444444444332 3568999999999999988754467999999999999999987766332 46
Q ss_pred eEEEccccCCcccC
Q 033605 99 DFVQCDIRNLEWRG 112 (115)
Q Consensus 99 ~~~~~d~~~~~~~~ 112 (115)
++.+..++++.+++
T Consensus 107 ~~~~~gLQ~f~P~~ 120 (218)
T PF05891_consen 107 EFYCVGLQDFTPEE 120 (218)
T ss_dssp EEEES-GGG----T
T ss_pred eEEecCHhhccCCC
Confidence 78888888887653
No 216
>PRK13699 putative methylase; Provisional
Probab=98.26 E-value=7.8e-06 Score=51.63 Aligned_cols=60 Identities=23% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
...+++.++.... .+++.|||..||+|..+....+.+. +.+|+|++++..+.+.+++...
T Consensus 149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 3445555554433 3788999999999999998887755 8999999999999999987653
No 217
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.7e-05 Score=50.95 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=60.5
Q ss_pred HHHHhcCCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCccc
Q 033605 39 TAENSFGDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWR 111 (115)
Q Consensus 39 ~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~ 111 (115)
.+...+...++.+|+|-|+|+|.++-.+++. +-.+++..|+.....+.|.+-+.+-++ ++++.+-|+...-|.
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 3445556679999999999999999999863 446999999999999999999988777 899999888765543
No 218
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1e-05 Score=50.12 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC--CCeEEEEeCChhHHHHHHHHhhccC-----------C
Q 033605 31 HIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG--ADQVIAIDIDSDSLELASENAADLE-----------L 96 (115)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~--~~~v~~vD~s~~~~~~a~~~~~~~~-----------~ 96 (115)
+.....++.+... ..++.++||+|+|+|+++..++. -+ ....+|||.-++.++.+++++...- .
T Consensus 67 ~mha~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 67 HMHATALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHHHh--hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 3344455555443 34888999999999999888874 22 3345999999999999999877543 1
Q ss_pred ceeEEEccccCCc
Q 033605 97 DIDFVQCDIRNLE 109 (115)
Q Consensus 97 ~v~~~~~d~~~~~ 109 (115)
++.++.+|.....
T Consensus 145 ~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 145 ELSIVVGDGRKGY 157 (237)
T ss_pred ceEEEeCCccccC
Confidence 6788888876543
No 219
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.23 E-value=4.3e-06 Score=54.81 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+++.+++.+...++..++|.--|.|..+..+++ .+..+++|+|-++.+++.++++...+..++.++++++.+++
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLD 82 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHH
Confidence 344455555556788999999999999999995 45589999999999999999998877668999999887653
No 220
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.22 E-value=6e-06 Score=52.66 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
+..++||||+|.|..+..++.. ..+|+++|+|+.|....+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k 135 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK 135 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC
Confidence 5678999999999999999876 44899999999998887764
No 221
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=1.5e-05 Score=49.98 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=52.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (115)
+...++++||+|.=+|+.++.+|. .+ ..+|+++|+++...+.+.+.....+. +++++++++.
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 345788999999999999988884 32 46999999999999999998888887 8999998864
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.14 E-value=7.5e-06 Score=49.82 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=35.9
Q ss_pred HHHHHHHhcC-CC--CCCeEEEEcCCCChHHHHHHhcC--CCeEEEEeCChh
Q 033605 36 MLYTAENSFG-DV--SNKVVADFGCGCGTLGAAATLLG--ADQVIAIDIDSD 82 (115)
Q Consensus 36 ~~~~~~~~~~-~~--~~~~vLDlG~G~G~~~~~~~~~~--~~~v~~vD~s~~ 82 (115)
.+..+.+.++ .. ++.++||+||++|.++..+++.. ...|+|+|+.+.
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4445555656 22 34899999999999999999875 579999999987
No 223
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.14 E-value=1.2e-05 Score=50.41 Aligned_cols=84 Identities=11% Similarity=0.118 Sum_probs=67.6
Q ss_pred chhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 29 GPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+.-...++.+.++...+......|.++|.|.|.++..+.+.+.+....+|+++..+.-.+......+.+..+.++|+..+
T Consensus 31 NfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 31 NFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred hHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEecccccee
Confidence 33445566677777777778889999999999999999988888999999999998888777666655888888998776
Q ss_pred cccC
Q 033605 109 EWRG 112 (115)
Q Consensus 109 ~~~~ 112 (115)
...+
T Consensus 111 ~I~~ 114 (326)
T KOG0821|consen 111 KIEK 114 (326)
T ss_pred hHHh
Confidence 6543
No 224
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.13 E-value=7.2e-06 Score=52.39 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhcc-----CCceeEEEcccc
Q 033605 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADL-----ELDIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~v~~~~~d~~ 106 (115)
++.+||-+|.|.|..+.++++++ ..+++++|+++..++.|++.+... +.+++++.+|+.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 78899999999999999999875 579999999999999999976642 227888888864
No 225
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=3.4e-05 Score=51.84 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=55.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhcC---CCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLLG---ADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
.+...++.+|||++++.|.=+..+++.. ...|+++|+++..+...+++....|. |+..++.|...++
T Consensus 151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~ 221 (355)
T COG0144 151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA 221 (355)
T ss_pred HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccc
Confidence 3345678999999999999999998643 23569999999999999999999999 8888888876443
No 226
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.12 E-value=1.7e-06 Score=54.35 Aligned_cols=63 Identities=30% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN 107 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~ 107 (115)
...++.+|||.+.|-|+.++..++.++.+|+.+|.+|..++.|+-|.=..+. .++++.||+.+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH
Confidence 4457899999999999999999999888999999999999998877544433 67999998743
No 227
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.10 E-value=1.4e-05 Score=52.29 Aligned_cols=56 Identities=29% Similarity=0.268 Sum_probs=38.6
Q ss_pred CCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhcc-CC--ceeEEEcc
Q 033605 49 NKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADL-EL--DIDFVQCD 104 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~--~v~~~~~d 104 (115)
..++||||+|...+-..+. +....+++|+|+++..++.|++++..+ ++ +|+++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 4589999999887644443 433679999999999999999999988 55 68887653
No 228
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=1.8e-05 Score=51.51 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccC----C-ceeEEEcccc
Q 033605 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE----L-DIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~----~-~v~~~~~d~~ 106 (115)
.+++||-+|.|.|..+.+++++. ..+++.+||++..++.|++.+.... . +++++.+|..
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~ 140 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV 140 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH
Confidence 44699999999999999999865 5799999999999999999887654 2 7788888764
No 229
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=98.08 E-value=1.2e-05 Score=54.92 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=48.7
Q ss_pred eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
.|||+|+|||.+++..++.++..|+++|.-..|.+.|++....++. ++.++..--
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 5899999999999999998888999999999999999999998887 677766433
No 230
>PRK10742 putative methyltransferase; Provisional
Probab=98.08 E-value=2.7e-05 Score=49.61 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHHHhcCCCCCC--eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc------C----CceeEEEccc
Q 033605 38 YTAENSFGDVSNK--VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL------E----LDIDFVQCDI 105 (115)
Q Consensus 38 ~~~~~~~~~~~~~--~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~----~~v~~~~~d~ 105 (115)
+.+.+.....++. +|||+-+|+|..++.++..++ +|+++|-++......+.+.... + .+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 3444554545555 899999999999999999877 6999999999998888887763 2 1688888887
Q ss_pred cCC
Q 033605 106 RNL 108 (115)
Q Consensus 106 ~~~ 108 (115)
.++
T Consensus 155 ~~~ 157 (250)
T PRK10742 155 LTA 157 (250)
T ss_pred HHH
Confidence 543
No 231
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.04 E-value=3.2e-05 Score=49.21 Aligned_cols=64 Identities=27% Similarity=0.234 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (115)
.+.+|+|||||.==+++.... .+...++|.||+..+++.........+.+.++...|...-+.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~ 169 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPK 169 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCC
Confidence 478999999998888877664 3456999999999999999999988888888888887665443
No 232
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.04 E-value=8.2e-05 Score=48.55 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
...++.+|||+++|.|.-+..+++. +...+++.|+++..+...+.+....+. ++.....|....
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~ 148 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL 148 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc
Confidence 4457889999999999999998863 357999999999999999999999998 888887776654
No 233
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=6e-05 Score=49.13 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+++..++.+...++...+|.--|.|..+..+++. + ..+++|+|-++.+++.|+++...++.++.+++..+.++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLA 86 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHH
Confidence 4555556666668889999999999999999964 3 357999999999999999999888879999998876543
No 234
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=4.2e-05 Score=48.27 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCccc
Q 033605 32 IASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~ 111 (115)
...++.+.+.+..+ .-..++|+|||.|.....+...+..+++-+|-|-.|++.++..- ..++.+....+|-+.++|.
T Consensus 58 ig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~ 134 (325)
T KOG2940|consen 58 IGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFK 134 (325)
T ss_pred HHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhccccc
Confidence 34445555544422 34589999999999999998777789999999999999987642 2333677788888888876
Q ss_pred C
Q 033605 112 G 112 (115)
Q Consensus 112 ~ 112 (115)
+
T Consensus 135 e 135 (325)
T KOG2940|consen 135 E 135 (325)
T ss_pred c
Confidence 5
No 235
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.98 E-value=3.1e-05 Score=47.88 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccC-------C-ceeEEEccc
Q 033605 48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLE-------L-DIDFVQCDI 105 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~-~v~~~~~d~ 105 (115)
+.-.+.|||||-|.+.+.++ .++..-++|+||-....+..+.++.+.. . |+.++..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na 126 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA 126 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc
Confidence 44579999999999999999 5677899999999999888888877654 2 455555544
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=2.1e-05 Score=48.66 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=48.1
Q ss_pred hhhHHHHHHHHHHhcCC-CCCCeEEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605 30 PHIASRMLYTAENSFGD-VSNKVVADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106 (115)
Q Consensus 30 ~~~~~~~~~~~~~~~~~-~~~~~vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~ 106 (115)
...+...+..+.+.+.. .++.+|+|||+-.|.++..+++... ..|+|+|+.|.-.- .+|.++++|+.
T Consensus 26 RSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----------~~V~~iq~d~~ 95 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----------PGVIFLQGDIT 95 (205)
T ss_pred cchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----------CCceEEeeecc
Confidence 33444444455555554 4568999999999999999996432 35999999984211 15788888876
Q ss_pred CCc
Q 033605 107 NLE 109 (115)
Q Consensus 107 ~~~ 109 (115)
.-+
T Consensus 96 ~~~ 98 (205)
T COG0293 96 DED 98 (205)
T ss_pred Ccc
Confidence 654
No 237
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.95 E-value=9.4e-05 Score=45.86 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=42.8
Q ss_pred eEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ce-eEEEccccC
Q 033605 51 VVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DI-DFVQCDIRN 107 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v-~~~~~d~~~ 107 (115)
+|||||||||..+.++++ .+.......|+++......+......+. |+ ..+..|+..
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 699999999999999995 5666888899999988777776666554 32 334455543
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=7.2e-05 Score=47.24 Aligned_cols=49 Identities=33% Similarity=0.444 Sum_probs=39.9
Q ss_pred HHHHhcC-CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHH
Q 033605 39 TAENSFG-DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELA 87 (115)
Q Consensus 39 ~~~~~~~-~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a 87 (115)
.+++.+. ..++.++||+|+.||.++.-+++.++++|+|+|..-..+..-
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k 118 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK 118 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence 3344444 457889999999999999999999999999999998776543
No 239
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.77 E-value=0.00024 Score=44.42 Aligned_cols=58 Identities=24% Similarity=0.165 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 48 SNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
++.++.|+||--|++..++.+. ....+++.|+++.-+..|.+++...+. +++...+|.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg 76 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG 76 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC
Confidence 4456999999999999999964 467999999999999999999998887 788888886
No 240
>PRK00536 speE spermidine synthase; Provisional
Probab=97.77 E-value=0.0001 Score=47.54 Aligned_cols=46 Identities=13% Similarity=-0.138 Sum_probs=41.2
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
.++++||=+|.|.|....++++++. +|+.+||++++++.+++.+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~ 116 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPH 116 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHH
Confidence 4778999999999999999999865 999999999999999995443
No 241
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.74 E-value=9.8e-05 Score=47.98 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=43.8
Q ss_pred eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+++|+.||.|.++..+.+.+...+.++|+++.+++..+.+.... ++++|+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-----~~~~Di~~~~ 55 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-----LIEGDITKID 55 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-----CccCccccCc
Confidence 68999999999988888777767899999999999999987532 4556665554
No 242
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.74 E-value=0.00028 Score=40.89 Aligned_cols=60 Identities=35% Similarity=0.611 Sum_probs=42.0
Q ss_pred EEEEcCCCChHHHHHHhcCC--CeEEEEeCChhHHHHHHHHhhccCCc-eeEEEccccC--CcccC
Q 033605 52 VADFGCGCGTLGAAATLLGA--DQVIAIDIDSDSLELASENAADLELD-IDFVQCDIRN--LEWRG 112 (115)
Q Consensus 52 vLDlG~G~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~-v~~~~~d~~~--~~~~~ 112 (115)
++|+|||+|... .+..... ..++|+|+++.++..++......... +.+..+|... +++.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFED 116 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCC
Confidence 999999999977 3333322 38999999999999866555431112 6788888765 66654
No 243
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=97.73 E-value=6.4e-05 Score=41.79 Aligned_cols=51 Identities=22% Similarity=0.269 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHH
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL 84 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~ 84 (115)
+.-++......+...+....+|+|||+|.+.--+.+.+. +-.|+|.-..-+
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~Rk~ 93 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARRRKS 93 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccccccc
Confidence 344444444443444567899999999999888887765 678999766443
No 244
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.73 E-value=0.0014 Score=41.75 Aligned_cols=93 Identities=24% Similarity=0.267 Sum_probs=49.3
Q ss_pred CCccccccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC
Q 033605 18 NPKVELEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL 96 (115)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 96 (115)
.+...+.+......-+-+.+.++.++ ....+++||=+|=.-- .++.++ ....++|+.+|+++..++..++.+.+.+.
T Consensus 15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl 92 (243)
T PF01861_consen 15 EPDVELDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL 92 (243)
T ss_dssp ---GGGT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred CCccccccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence 34455555444444444455555555 3347889998874333 334444 34467999999999999999999999999
Q ss_pred ceeEEEccccCCcccCC
Q 033605 97 DIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 97 ~v~~~~~d~~~~~~~~~ 113 (115)
+++.+..|+.+ |+|+.
T Consensus 93 ~i~~~~~DlR~-~LP~~ 108 (243)
T PF01861_consen 93 PIEAVHYDLRD-PLPEE 108 (243)
T ss_dssp -EEEE---TTS----TT
T ss_pred ceEEEEecccc-cCCHH
Confidence 99999999876 55543
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.57 E-value=0.00057 Score=42.52 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCeEEEEcCCCChHHHHHHh----c-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGTLGAAATL----L-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~----~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+|+.|+|+|.-.|..+..+|. . +..+|+|+|++....+...........++++++||..+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHH
Confidence 889999999999998887763 2 4579999999655443322222111127999999986543
No 246
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.55 E-value=0.00039 Score=43.07 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCCh--HHHHHH--h--c---C-CCeEEEEeCChhHHHHHHH
Q 033605 47 VSNKVVADFGCGCGT--LGAAAT--L--L---G-ADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~--~~~~~~--~--~---~-~~~v~~vD~s~~~~~~a~~ 89 (115)
.++-+|+..||++|. +++.+. + . + ..+|+|+|+|+.+++.|++
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 356799999999998 344333 3 1 1 2499999999999999876
No 247
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.53 E-value=0.00014 Score=43.51 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=31.6
Q ss_pred EEEeCChhHHHHHHHHhhccC----CceeEEEccccCCcccCC
Q 033605 75 IAIDIDSDSLELASENAADLE----LDIDFVQCDIRNLEWRGK 113 (115)
Q Consensus 75 ~~vD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~~~~~ 113 (115)
+|+|+|++|++.|+++..... .+++++++|++++|+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~ 43 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDC 43 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCC
Confidence 489999999999987765322 279999999999998763
No 248
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.49 E-value=0.00046 Score=45.47 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=44.5
Q ss_pred eEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 51 VVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+++|+.||.|.++.-+.+.+..-+.++|+++.+.+..+.|.. ....+|+.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP------EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT------EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc------ccccccccccc
Confidence 799999999999999988877788999999999999999885 56677776654
No 249
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=97.47 E-value=4.8e-05 Score=49.56 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHH-HHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEcccc
Q 033605 48 SNKVVADFGCGCGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~ 106 (115)
.+..|+|+.+|.|++++. +...+++.|+++|.+|..++..+.++..++. ...++.+|-.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R 255 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNR 255 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccc
Confidence 457899999999999994 4477889999999999999999999887764 4444445543
No 250
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=97.41 E-value=0.0011 Score=42.49 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCCChHHHHHHhc---------CCCeEEEEeCChhHHHHHHHHhhc
Q 033605 48 SNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
.+-+|+|+|+|+|.+...+++. ...+++-+|+||.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3579999999999998887742 124899999999999888888776
No 251
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.37 E-value=0.00076 Score=43.72 Aligned_cols=43 Identities=23% Similarity=0.073 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~ 91 (115)
.+.+||=.|||.|+++.+++..+. .+.|.|.|--|+-..+-.+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHH
Confidence 457899999999999999998877 9999999999986665543
No 252
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.31 E-value=3.3e-05 Score=47.97 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
.+.++||+|+|.|..+..++.. ..+|++.|+|..|.++.++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence 4679999999999999999865 34899999999999988764
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0025 Score=39.64 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=49.1
Q ss_pred HhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEcccc
Q 033605 42 NSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIR 106 (115)
Q Consensus 42 ~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~ 106 (115)
...+..++.+||=||..+|....+++.. +...++|+|.|+.+....-..+.... |+-.+.+|+.
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA~ 134 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDAR 134 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-CceeeecccC
Confidence 3446778999999999999999999974 44689999999998766666555443 6666666664
No 254
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.29 E-value=0.00093 Score=46.87 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=61.7
Q ss_pred cccCCCchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc----C-CCeEEEEeCChhHHHHHHHHhhccCCc
Q 033605 23 LEQYPTGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL----G-ADQVIAIDIDSDSLELASENAADLELD 97 (115)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~~ 97 (115)
..++.+|.++..-+++.+.. .+..+|.|..||+|.+.....++ . ...++|.|+++.....|+.+..-.+++
T Consensus 165 ~GEfyTP~~v~~liv~~l~~----~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 165 AGEFYTPREVSELIVELLDP----EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCccCChHHHHHHHHHHcCC----CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 35688888887777776543 24459999999999987766642 1 257999999999999999998877763
Q ss_pred --eeEEEccccCCc
Q 033605 98 --IDFVQCDIRNLE 109 (115)
Q Consensus 98 --v~~~~~d~~~~~ 109 (115)
+....+|...-|
T Consensus 241 ~~~~i~~~dtl~~~ 254 (489)
T COG0286 241 GDANIRHGDTLSNP 254 (489)
T ss_pred ccccccccccccCC
Confidence 566666654444
No 255
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.29 E-value=0.0039 Score=39.30 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=44.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 43 SFGDVSNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
..+..++.+||-||..+|....+++.. + ...|+++|.|+......-..+.... |+-.+-.|+..
T Consensus 68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr~ 133 (229)
T PF01269_consen 68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDARH 133 (229)
T ss_dssp --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TTS
T ss_pred ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCCC
Confidence 345667889999999999999999963 3 4699999999977655554444333 67777777753
No 256
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.26 E-value=0.0003 Score=46.84 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=62.1
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHH-------HHHHHhhccCC---c
Q 033605 28 TGPHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLE-------LASENAADLEL---D 97 (115)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~-------~a~~~~~~~~~---~ 97 (115)
.+-.....+.-.+.+.....+++.|.|...|||.+....+.+|+ .|+|.||+-.++. ..+.|+..++. -
T Consensus 188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f 266 (421)
T KOG2671|consen 188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF 266 (421)
T ss_pred CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence 33344444544455555567899999999999999999999866 9999999988876 34556666664 4
Q ss_pred eeEEEccccCCcccC
Q 033605 98 IDFVQCDIRNLEWRG 112 (115)
Q Consensus 98 v~~~~~d~~~~~~~~ 112 (115)
+.++.+|..+-++..
T Consensus 267 ldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 267 LDVLTADFSNPPLRS 281 (421)
T ss_pred hheeeecccCcchhh
Confidence 778888887766543
No 257
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.25 E-value=0.0029 Score=44.18 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
..+++|+.||.|.+..-+-..+..-|.++|+++.+.+.-+.|....+ +...+.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCc
Confidence 45899999999999998877776677889999999999888863211 2334445555543
No 258
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.24 E-value=0.0024 Score=41.28 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCCCC-CeEEEEcCCCCh--HHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 35 RMLYTAENSFGDVSN-KVVADFGCGCGT--LGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 35 ~~~~~~~~~~~~~~~-~~vLDlG~G~G~--~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
..+...+..+-...+ .-+||||||.-. .+=++++ .+.++|+-+|.+|..+..++..+..... ...++++|+.+
T Consensus 54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence 334444444333224 369999999443 4555654 4678999999999999999998876653 48999999865
No 259
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.23 E-value=0.0039 Score=39.22 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++.+||++|-|.|.....+.+.+..+-+-+|..|..++..+...-...-||.++.+-.++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDv 161 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDV 161 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhh
Confidence 58899999999999999988877776788899999999999988766555888888866543
No 260
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.18 E-value=0.0026 Score=41.27 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCh--HHHHHH--hcC------CCeEEEEeCChhHHHHHHH
Q 033605 48 SNKVVADFGCGCGT--LGAAAT--LLG------ADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 48 ~~~~vLDlG~G~G~--~~~~~~--~~~------~~~v~~vD~s~~~~~~a~~ 89 (115)
.+-+|+..||++|- +++.++ +.. ..+|+|+|+|..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 46799999999998 444433 322 3589999999999999876
No 261
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.14 E-value=0.0017 Score=43.89 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=47.5
Q ss_pred CCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhh--cc------CCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAA--DL------ELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~--~~------~~~v~~~~~d~~~ 107 (115)
.-.+||-+|.|.|....++.+++ ..+++-+|++|.|++.++++.. .. +.+++++..|+-+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~ 357 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ 357 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH
Confidence 34589999999999999999987 5799999999999999984322 11 1168888887644
No 262
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=97.14 E-value=0.00032 Score=47.83 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~ 107 (115)
++..|-|+.||.|-+.+.++..+ +.|++-|.++++++..+.++..+.+ +++++..|+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 67899999999999999999876 5999999999999999999987765 58888888743
No 263
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.06 E-value=0.0035 Score=40.82 Aligned_cols=62 Identities=29% Similarity=0.355 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCCCh-HHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhh-ccC--CceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGT-LGAAATL-LG-ADQVIAIDIDSDSLELASENAA-DLE--LDIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~-~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~-~~~--~~v~~~~~d~~~~~ 109 (115)
.+.+|+=||||.=- .++.+++ ++ ...|+++|+++.+++.+++... ..+ .++.|+++|..+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~ 187 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT 187 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence 45699999999544 5555664 33 4589999999999999998877 233 37999999987654
No 264
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.04 E-value=0.00075 Score=45.57 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcccCCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f 114 (115)
.++..++|+|||.|....+++.+..+.++|++.++..+..+........+ +..++.+|+.+-|+++..
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~ 178 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNT 178 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccc
Confidence 45568999999999999999988778999999999999888776665554 455577888888888743
No 265
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.0066 Score=42.27 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=54.0
Q ss_pred CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
-++|-+|||...++..+...+...|+.+|+|+-.++..............++..|+..+.|++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence 489999999999999998888789999999999999888877533336888889998888876
No 266
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.0015 Score=40.18 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLL--GADQVIAIDID 80 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s 80 (115)
.++.+|||+||..|.++....+. +...|.|+|+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 46789999999999999888753 45689999964
No 267
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.0011 Score=43.96 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=41.3
Q ss_pred EEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 52 VADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 52 vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
|+|+.||.|.++.-+.+.+..-+.++|+++.+++..+.|... .+.++|+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-----KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhh
Confidence 689999999999988877765667899999999999988753 33445655543
No 268
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.01 E-value=0.0026 Score=39.73 Aligned_cols=49 Identities=31% Similarity=0.537 Sum_probs=25.7
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
+...|.|+|||.+.++..+.+ .-+|...|+... +-.+..+|+.++|+++
T Consensus 72 ~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVPLED 120 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S--T
T ss_pred CCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCcCCC
Confidence 456899999999999966531 226888887663 1135567777777765
No 269
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.94 E-value=0.0016 Score=42.22 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhc---CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHH
Q 033605 33 ASRMLYTAENSF---GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL 84 (115)
Q Consensus 33 ~~~~~~~~~~~~---~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~ 84 (115)
+...+..+.+.+ -...+++|||+|||.|.-.+.....+...+...|++.+.+
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 445555555332 2347899999999999999988877667899999998877
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.94 E-value=0.0016 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.3
Q ss_pred CeEEEEcCCCChHHHHHHhcCC
Q 033605 50 KVVADFGCGCGTLGAAATLLGA 71 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~~~ 71 (115)
.++||+|||+|.++..|...+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V 140 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV 140 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc
Confidence 5799999999999999987744
No 271
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.87 E-value=0.0052 Score=42.13 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 46 DVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 46 ~~~~~~vLDlG~G~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
..++.+|||.++..|.-+.++|. .+...|++.|.+...+...+.++...|. +..+...|..++|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~ 305 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP 305 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc
Confidence 45788999999999998888884 3456899999999999999999999998 7777788887654
No 272
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0023 Score=43.22 Aligned_cols=70 Identities=13% Similarity=0.058 Sum_probs=58.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHh--cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccCCC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATL--LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRGKY 114 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~f 114 (115)
...++.+|+|..|-.|.-+.+++. .+..++.|.|.+..+.+..++.....++ .++.+.+|+...+.+++|
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~ 282 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKF 282 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccc
Confidence 455778999999999999999885 3456999999999999999999998888 788889999886555444
No 273
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=96.86 E-value=0.0082 Score=40.81 Aligned_cols=41 Identities=29% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
-+.|+|+|.|.|.++..++-...-.|.+||-|......|+.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 35899999999999999984334499999999766655544
No 274
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.013 Score=38.37 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 35 RMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 35 ~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
.+....+.. ....++.|||.-+|+|..+....+.+. .++|+|+++..++.+.++....
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 344444443 334788999999999999998877755 8999999999999999988754
No 275
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.01 Score=40.11 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=47.7
Q ss_pred CCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccc
Q 033605 49 NKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDI 105 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~ 105 (115)
+.+|+|.-+|+|.-++..+. .+..+++.-|+||.+.+.+++|+..+ +.+...++.|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA 111 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDA 111 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchH
Confidence 78999999999999999885 44448999999999999999999988 33666666655
No 276
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.79 E-value=0.0044 Score=40.04 Aligned_cols=48 Identities=29% Similarity=0.547 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRG 112 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 112 (115)
.....|.|+|||-+.++. .... .|+..|+.+. +-.++.+|+.++|+++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~a~--------------~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERH-KVHSFDLVAV--------------NERVIACDMRNVPLED 226 (325)
T ss_pred cCceEEEecccchhhhhh---cccc-ceeeeeeecC--------------CCceeeccccCCcCcc
Confidence 355689999999998876 2222 6777776542 2345566666666654
No 277
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.78 E-value=0.0039 Score=40.88 Aligned_cols=43 Identities=30% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCh--HHHHHH--hc-C----CCeEEEEeCChhHHHHHHHH
Q 033605 48 SNKVVADFGCGCGT--LGAAAT--LL-G----ADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 48 ~~~~vLDlG~G~G~--~~~~~~--~~-~----~~~v~~vD~s~~~~~~a~~~ 90 (115)
.+-+|+..||++|. +++.+. +. + ..+|+|+|+|+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 34799999999998 444433 32 1 24799999999999999874
No 278
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.73 E-value=0.0056 Score=40.70 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=39.2
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~ 89 (115)
....+.+||=+|+| .|..+...++ .++++|+.+|+++.+++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 44578899999999 6777777776 688999999999999999998
No 279
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.72 E-value=0.0009 Score=37.08 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=14.5
Q ss_pred EEEcCCCChHHHHHHhc---CC-CeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccC
Q 033605 53 ADFGCGCGTLGAAATLL---GA-DQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRN 107 (115)
Q Consensus 53 LDlG~G~G~~~~~~~~~---~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~ 107 (115)
||+|+..|..+..+++. .. .+++++|..+. .+..++.....+ .++++++++..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~ 60 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD 60 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH
Confidence 68999999998888742 12 37999999995 222222222222 279999988753
No 280
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=96.59 E-value=0.023 Score=36.80 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc------CCCeEEEEeCChhHH
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL------GADQVIAIDIDSDSL 84 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~------~~~~v~~vD~s~~~~ 84 (115)
++..+.+.--..++..++|+|||.|.++.++++. +...++.||-.....
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 4444444433346678999999999999998852 345889999766554
No 281
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.46 E-value=0.0036 Score=40.37 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
.++.++||+|||+-.+....+.....+|+..|+++...+..++.+...
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~ 102 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKE 102 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCC
Confidence 467799999999966654444444669999999999999888877654
No 282
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.012 Score=39.37 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
..+++|+.||.|.+..-+...+..-+.++|+++.+++.-+.+...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence 468999999999999888877776788899999999999998873
No 283
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.45 E-value=0.014 Score=39.88 Aligned_cols=60 Identities=28% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCC-c--eeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLEL-D--IDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~--v~~~~~d~~~ 107 (115)
.+.++||.-+|+|.-++..+.. +..+|++-|+|+.+++..+.|+..++. . +++.+.|+..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ 113 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV 113 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH
Confidence 4568999999999999888853 457999999999999999999988877 2 6777777643
No 284
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.43 E-value=0.0031 Score=41.01 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCcccCCCC
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLEWRGKYI 115 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f~ 115 (115)
.+..++...+ .+..++|+|||.|..+. ..+...++|.|++...+.-++..-. ......|+.++|+++..|
T Consensus 35 ~v~qfl~~~~--~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~-----~~~~~ad~l~~p~~~~s~ 104 (293)
T KOG1331|consen 35 MVRQFLDSQP--TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGG-----DNVCRADALKLPFREESF 104 (293)
T ss_pred HHHHHHhccC--CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCC-----ceeehhhhhcCCCCCCcc
Confidence 3444444433 57799999999998654 2355689999999988877765432 146778999999887654
No 285
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.037 Score=37.41 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=38.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc---------CCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL---------GADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
..+.+-.++|+|+|.|.+...+++. ...++.-||+|++....=++.....
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 4445678999999999998777632 2569999999999887766666544
No 286
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=96.41 E-value=0.0089 Score=38.28 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
++..+.+.++..+..+++|+.||+|..+..+... ...++.-|+++..+...+..+.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHh
Confidence 4455555555436789999999999999988663 5599999999998877774443
No 287
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.029 Score=37.98 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=50.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc-CC----CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCc
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL-GA----DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLE 109 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~-~~----~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~ 109 (115)
...++.+|||+++..|.-+..+.+. .. ..|++-|+++.++....+.....+. ++.+...|+..+|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p 222 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP 222 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecc
Confidence 4568899999999999999888753 22 2899999999999999988866655 6666666665544
No 288
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.10 E-value=0.014 Score=39.02 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=44.0
Q ss_pred CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
...+|+|.|.|+.+..+... ..+|-++++....+..++.... - .|+.+-+|...-
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~--gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P--GVEHVAGDMFQD 233 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C--Ccceeccccccc
Confidence 68999999999999998874 4479999999999888887774 3 377777876443
No 289
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.93 E-value=0.035 Score=37.47 Aligned_cols=46 Identities=37% Similarity=0.482 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605 47 VSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
.++.+|+=+||| .|.++..+++ .+...|+++|.++..++.|++...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC
Confidence 344589999999 6778777775 577899999999999999998543
No 290
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=95.68 E-value=0.057 Score=31.88 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=24.7
Q ss_pred EEcCCCC--hHHHHHH--h-cCCCeEEEEeCChhHHHHHHHH
Q 033605 54 DFGCGCG--TLGAAAT--L-LGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 54 DlG~G~G--~~~~~~~--~-~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
|+|++.| .....+. . ....+|+++|++|..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655553 2 2356899999999999998888
No 291
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.58 E-value=0.073 Score=36.45 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=34.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
...++++||-|.+|-.+..-.++. ++++|++||+||......+-+..
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~-~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLA-GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhc-CCceEEEEeCCHHHHHHHHHHHH
Confidence 445888999998776666555545 46699999999998876665443
No 292
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.56 E-value=0.028 Score=36.86 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=51.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccCCcccC
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRNLEWRG 112 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~ 112 (115)
....++.|+=+| -.-..++.++- ..+.+|..+||++..++..++.+.+.+. |++.+..|+.+ |+|+
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~-plpe 216 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRN-PLPE 216 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcc-cChH
Confidence 345778899888 44455666553 3367999999999999999999999998 69999999876 5554
No 293
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.48 E-value=0.048 Score=34.82 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=37.0
Q ss_pred CeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH---Hhhcc-CC------ceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE---NAADL-EL------DIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~---~~~~~-~~------~v~~~~~d~~~~ 108 (115)
.+|||.-+|-|.=++.++..++ +|+++|-||-+....+. +.... .. +++++++|..++
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 4899999999999999887765 89999999988655443 22211 11 789999997653
No 294
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.011 Score=35.72 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
....+.+|||+|.| +|..++.+|. .+...|...|-+++.+...++....+
T Consensus 26 n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 26 NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 33467899999999 6777788874 56779999999999998887765443
No 295
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.38 E-value=0.035 Score=37.89 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhc-CCCeEEEEeCChhHHHHHHHHhhc-------cCC---ce
Q 033605 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLL-GADQVIAIDIDSDSLELASENAAD-------LEL---DI 98 (115)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~---~v 98 (115)
++.....+..+++.....+.+...|+|+|.|.....++.. +.+.-+|+++.+...+.+..+... .|. .+
T Consensus 174 GE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~ 253 (419)
T KOG3924|consen 174 GETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKI 253 (419)
T ss_pred hhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCce
Confidence 4445555666667778889999999999999988877754 456889999877665544443322 122 46
Q ss_pred eEEEccccC
Q 033605 99 DFVQCDIRN 107 (115)
Q Consensus 99 ~~~~~d~~~ 107 (115)
..+++++.+
T Consensus 254 ~~i~gsf~~ 262 (419)
T KOG3924|consen 254 ETIHGSFLD 262 (419)
T ss_pred eecccccCC
Confidence 666666544
No 296
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.20 E-value=0.087 Score=35.24 Aligned_cols=52 Identities=35% Similarity=0.391 Sum_probs=37.4
Q ss_pred HHhcCCCCCCeEEEEcCCC-ChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605 41 ENSFGDVSNKVVADFGCGC-GTLGAAATL-LGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 41 ~~~~~~~~~~~vLDlG~G~-G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
.+.....++.++.-+|+|. |.....-++ .++++++|+|++++-.+.|++.-.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa 238 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA 238 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence 3444556778888888874 444444444 578899999999999999887543
No 297
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.13 E-value=0.051 Score=34.98 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHH
Q 033605 48 SNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSL 84 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~ 84 (115)
+...|||+|+|+|-.++.++.....+|+..|+.....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~ 122 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVE 122 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHH
Confidence 3567999999999888888875566888888766443
No 298
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.11 E-value=0.25 Score=31.78 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhccC
Q 033605 48 SNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADLE 95 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~ 95 (115)
+..++||+|.|.-.+--.+.. .-.-..+|.|+++.++..|+.++..++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~ 126 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP 126 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc
Confidence 345789998876655444432 224489999999999999999988873
No 299
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.27 Score=31.97 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=41.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHh----cC-CCeEEEEeCChhHHHHHHHH-hhccCC-ceeEEEcccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASEN-AADLEL-DIDFVQCDIR 106 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~----~~-~~~v~~vD~s~~~~~~a~~~-~~~~~~-~v~~~~~d~~ 106 (115)
-.+..++|+|+|+..-+..+.. .+ ...++.+|+|...+....+. ...+.- .+.-+++|.+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~ 143 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYE 143 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHH
Confidence 3578999999999997777663 12 35899999999988654444 334432 6666677654
No 300
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=94.82 E-value=0.087 Score=33.23 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHhcCCCC----CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccc
Q 033605 30 PHIASRMLYTAENSFGDVS----NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDI 105 (115)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~----~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~ 105 (115)
...+..+++++.+.....+ ..++|||||=+........ +.-.|+.||+++. .-.+.++|+
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~--~~fdvt~IDLns~--------------~~~I~qqDF 92 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS--GWFDVTRIDLNSQ--------------HPGILQQDF 92 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCccccc--CceeeEEeecCCC--------------CCCceeecc
Confidence 3445566666665543322 3599999998776555432 2236999999983 224667777
Q ss_pred cCCccc
Q 033605 106 RNLEWR 111 (115)
Q Consensus 106 ~~~~~~ 111 (115)
.+.|+|
T Consensus 93 m~rplp 98 (219)
T PF11968_consen 93 MERPLP 98 (219)
T ss_pred ccCCCC
Confidence 777665
No 301
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.80 E-value=0.15 Score=34.39 Aligned_cols=53 Identities=32% Similarity=0.443 Sum_probs=41.8
Q ss_pred HHHHhcCCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 033605 39 TAENSFGDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASENA 91 (115)
Q Consensus 39 ~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~ 91 (115)
...+.....++.+|.=+||| .|...+.-+. .++..++++|+++..++.|++.-
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fG 230 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFG 230 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcC
Confidence 34555566788899999998 6777776664 67789999999999999998753
No 302
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.80 E-value=0.29 Score=32.42 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=45.3
Q ss_pred CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
..+..||--|.|.|. ++.++++.+. +++..|++.+....-.+.....| ++....+|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~ 98 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDR 98 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCH
Confidence 357899999999886 5666777755 89999999998877777666555 677777777553
No 303
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.72 E-value=0.11 Score=36.96 Aligned_cols=44 Identities=23% Similarity=0.149 Sum_probs=35.3
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
.++.+|+=+||| .|..++..++...+.|+++|.+++.++.+++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 468899999999 56677777754334899999999999988873
No 304
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=0.35 Score=34.66 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCCC---CCeEEEEcCCCChHHHHHH---h--cCCCeEEEEeCChhHHHHHHHHhh-ccCCceeEEEc
Q 033605 33 ASRMLYTAENSFGDVS---NKVVADFGCGCGTLGAAAT---L--LGADQVIAIDIDSDSLELASENAA-DLELDIDFVQC 103 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~---~~~vLDlG~G~G~~~~~~~---~--~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~v~~~~~ 103 (115)
...+...+++..+..+ ..+|+=+|+|.|-+..... . ....+++++|-+|.++-..+.+.. ..+.+|+++.+
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEec
Confidence 4455555555543322 4568889999998764443 2 123589999999999987776332 23448999999
Q ss_pred cccCCccc
Q 033605 104 DIRNLEWR 111 (115)
Q Consensus 104 d~~~~~~~ 111 (115)
|+.+++.|
T Consensus 429 DMR~w~ap 436 (649)
T KOG0822|consen 429 DMRKWNAP 436 (649)
T ss_pred cccccCCc
Confidence 99999865
No 305
>PRK07904 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.45 Score=30.46 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhH-HHHHHHHhhccCC-ceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-LELASENAADLEL-DIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~-~~~a~~~~~~~~~-~v~~~~~d~~~~ 108 (115)
.+.++|-.|++ |.++..++ +.+..+|+.++-++.. ++.+.+.....+. +++++++|+.+.
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT 72 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence 56688888875 44444444 3444589999887764 5544444444333 788899988654
No 306
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.40 E-value=0.23 Score=27.68 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 57 CGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 57 ~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
||.|.++..+++ ....+|+.+|.+++.++.++... +.++.+|..+.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~ 52 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG------VEVIYGDATDP 52 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT------SEEEES-TTSH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc------cccccccchhh
Confidence 677788877773 23448999999999988877543 56888887654
No 307
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.089 Score=35.77 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cC-CCeEEEEeCChhHHHHHHHHhh
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LG-ADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~-~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
.+..+....+...+.++||+|.|.|.-...+.. .+ ...++.++.|+..-+.......
T Consensus 101 sL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~ 159 (484)
T COG5459 101 SLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAE 159 (484)
T ss_pred HHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHh
Confidence 344444444566788999999999988777664 33 3578889999976655554433
No 308
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.16 E-value=0.61 Score=29.63 Aligned_cols=60 Identities=23% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. ++..+++.+. +|+.++.+++.++.........+.++.++.+|+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 70 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQH 70 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence 56788888875543 2233334444 899999888777666555544444677777877653
No 309
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.11 E-value=0.27 Score=30.69 Aligned_cols=57 Identities=25% Similarity=0.406 Sum_probs=41.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHh----cC-CCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~----~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++..|+|+|.-.|..++.+|. .+ ..+|+++|++=..++.+..... .+.|++++-.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p----~i~f~egss~d 129 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVP----DILFIEGSSTD 129 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCC----CeEEEeCCCCC
Confidence 3888999999999998888774 23 2599999998766655443322 67888877654
No 310
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.91 E-value=0.22 Score=33.89 Aligned_cols=46 Identities=39% Similarity=0.584 Sum_probs=36.1
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605 45 GDVSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~ 90 (115)
...++.+||..|||. |..+..+++. +...+++++.++++.+.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 445678999999986 7788888864 444699999999998888765
No 311
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.81 E-value=0.2 Score=36.49 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.6
Q ss_pred HhcCCC-CCCeEEEEcCCCChHHHHHHhc-C-CCeEEEEeCChh
Q 033605 42 NSFGDV-SNKVVADFGCGCGTLGAAATLL-G-ADQVIAIDIDSD 82 (115)
Q Consensus 42 ~~~~~~-~~~~vLDlG~G~G~~~~~~~~~-~-~~~v~~vD~s~~ 82 (115)
..+... +...||||||.+|.+....++. + ..-|+|+|+-|-
T Consensus 37 ~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 37 KKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred HHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 333433 5668999999999999888864 3 358899998763
No 312
>PRK07677 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.84 Score=28.97 Aligned_cols=56 Identities=32% Similarity=0.337 Sum_probs=34.3
Q ss_pred CeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 50 KVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++|-.|++.| ++.. +++.+. +|++++-++...+.+.+.....+.++.++.+|+.+
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN 61 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 46776776544 3333 334444 89999888777666655544333367777777754
No 313
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.75 E-value=0.21 Score=29.43 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=28.0
Q ss_pred eEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCC
Q 033605 73 QVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNL 108 (115)
Q Consensus 73 ~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~ 108 (115)
+|+|.||.+++++..+++....+. ++++++..=+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l 38 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL 38 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH
Confidence 589999999999999999998876 688888654443
No 314
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.91 Score=28.77 Aligned_cols=58 Identities=26% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|++ |.++..++ +.+ .+|+.++-++.............+.++.++.+|+.+
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 67 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREAGGEALFVACDVTR 67 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 46688888864 44444333 444 489999988877666555554444467788888765
No 315
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.69 E-value=0.31 Score=32.92 Aligned_cols=49 Identities=31% Similarity=0.295 Sum_probs=37.7
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605 44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
....++++|+=.|+| .|.++..+++.-.++|+++|.+++-.+.|++.-.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA 211 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA 211 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC
Confidence 355678999999998 3446677776333799999999999999888644
No 316
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=93.62 E-value=0.98 Score=28.68 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=38.4
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|+ +|.++..++ +.+ .+|+.++-+++.++.........+.++.++.+|+.+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAG-AHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC
Confidence 6778887885 444444444 344 499999998877666555554444467788888765
No 317
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=93.61 E-value=0.33 Score=32.37 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=36.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
..+.+|+-+|+|--+...++++.+. +|.+||+++..+..-+-++.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHH
Confidence 3677999999998888888877755 99999999998866555444
No 318
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.54 E-value=0.66 Score=27.69 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCC
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDID 80 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s 80 (115)
...++++...... -+.-|||+|-|+|+.--++-+ .+...|+++|-.
T Consensus 15 R~~L~~a~~~v~~-~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 15 RDCLNWAAAQVAG-LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHHhcC-CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 4456666666444 346899999999999988885 566799999943
No 319
>PRK08339 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.99 Score=29.02 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++.|. ++..+++.+. +|+.++.++..++...+..... +.++.++.+|+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR 70 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 56688888876544 2333445554 8999999887776665554332 33678888888764
No 320
>PRK07063 short chain dehydrogenase; Provisional
Probab=93.52 E-value=1 Score=28.70 Aligned_cols=59 Identities=25% Similarity=0.236 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhc--cCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAAD--LELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++. .++.. +++.+ .+|+.++-+++..+...+.... .+.++.++.+|+.+.
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREG-AAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA 70 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence 567888888654 33333 33444 4899999988877666655543 233677888887653
No 321
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.49 E-value=0.99 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. ++..+++.+. +|+.++.++...+...+.....+.++.++..|+.+.
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 69 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEM 69 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 45678878766554 2233334444 999999888776665555544444566777777543
No 322
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=93.48 E-value=1 Score=28.89 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=39.5
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++.|. ++..++..+. +|+.++-++..++.........+.++.++.+|+.+.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 71 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDE 71 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 56678888876544 2333444544 888899888777666666555444677888887643
No 323
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.46 E-value=1.1 Score=28.42 Aligned_cols=58 Identities=28% Similarity=0.311 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++ |.++..+ ++.+. +|++++.++...+.........+.++.++..|+.+
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 65 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD 65 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC
Confidence 45678877754 4444433 34444 89999988876665555544334467777877754
No 324
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.34 E-value=1.1 Score=29.14 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++. .++..++ +.+ .+|+.++.++..++...+.....+.++.++..|+.+.
T Consensus 5 ~~k~vlVTGas~-gIG~ala~~La~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~ 67 (275)
T PRK05876 5 PGRGAVITGGAS-GIGLATGTEFARRG-ARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHR 67 (275)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 566788777654 4444443 444 4899999888776655554444444677788887653
No 325
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.22 E-value=0.65 Score=32.32 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 37 LYTAENSFGD-VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 37 ~~~~~~~~~~-~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
++.+.+..+. ..+++|+=+|+| .|......++...++|+++|.++.....|+.
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 3444444332 478899999999 5666665665334489999999988877765
No 326
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.19 E-value=0.52 Score=31.53 Aligned_cols=46 Identities=39% Similarity=0.495 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~ 90 (115)
...++++||=.||| .|..+..+++. +..+|+++|.+++.++.+++.
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 34467888888876 44455556654 445799999999999888763
No 327
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.19 E-value=0.079 Score=36.33 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=16.0
Q ss_pred CCCeEEEEcCCCChHHHHHH
Q 033605 48 SNKVVADFGCGCGTLGAAAT 67 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~ 67 (115)
+..+|+|+|||+|.+++.+.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred cceeEEEecCCCCccHHHHH
Confidence 35689999999998876653
No 328
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=93.18 E-value=0.81 Score=26.94 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=36.0
Q ss_pred eEEEEcCCCChHHHH----HHhcCCCeEEEEeCC--hhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAA----ATLLGADQVIAIDID--SDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++|=.|++ |.++.. +++.+...|+.+.-+ .+..+.........+.++.+++.|+.+.
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~ 64 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDP 64 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccc
Confidence 45666665 444444 344556688888888 5555555555555555889999887653
No 329
>PRK06194 hypothetical protein; Provisional
Probab=93.08 E-value=1.2 Score=28.88 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++.++|=.|+ +|.++..++ +.+ .+|+.+|.++..++.........+.++.++.+|+.+.
T Consensus 5 ~~k~vlVtGa-sggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 67 (287)
T PRK06194 5 AGKVAVITGA-ASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDA 67 (287)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 4567886664 455554444 344 4899999887766655544443344678888888653
No 330
>PTZ00357 methyltransferase; Provisional
Probab=93.07 E-value=0.47 Score=35.38 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=41.9
Q ss_pred CeEEEEcCCCChHHHHHHh----cC-CCeEEEEeCChhHHHHHHHHh---hcc-------CCceeEEEccccCCccc
Q 033605 50 KVVADFGCGCGTLGAAATL----LG-ADQVIAIDIDSDSLELASENA---ADL-------ELDIDFVQCDIRNLEWR 111 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~----~~-~~~v~~vD~s~~~~~~a~~~~---~~~-------~~~v~~~~~d~~~~~~~ 111 (115)
..|+=+|+|.|-+.....+ .+ ..+|++||-++..+.....+. ... +-.|+++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~p 778 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATA 778 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccc
Confidence 3689999999997654432 22 248999999977554433332 122 22599999999998654
No 331
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=0.76 Score=31.50 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=30.3
Q ss_pred CeEEEEcCCCChHHHHHHh-cCCCeEEE---EeCChhHHHHHHHHhhc
Q 033605 50 KVVADFGCGCGTLGAAATL-LGADQVIA---IDIDSDSLELASENAAD 93 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~-~~~~~v~~---vD~s~~~~~~a~~~~~~ 93 (115)
..++|+|||.|.++.+++. ....+++- +|-....+..=.+....
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~ 231 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNK 231 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhcc
Confidence 5899999999999999984 33344444 77666666554444333
No 332
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.97 E-value=0.35 Score=32.58 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=38.2
Q ss_pred EEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEc
Q 033605 52 VADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQC 103 (115)
Q Consensus 52 vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~ 103 (115)
-+|||.|...+-..+. ....-..+++|+.+.....|+.++..++. .+.+++.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~ 160 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKV 160 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEe
Confidence 4788877666544443 23335889999999999999999998876 5666655
No 333
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.95 E-value=0.19 Score=33.90 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=17.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHh
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATL 68 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~ 68 (115)
.....-+|+|+||..|..++.+..
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHH
T ss_pred CCCCceEEEecCCCCCccHHHHHH
Confidence 344566899999999999887653
No 334
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.93 E-value=1.3 Score=29.07 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=37.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.+.++|=.|++ |.++..++ +.+ .+|+.++-+++.++...+.....+.++.++.+|+.+.
T Consensus 39 ~~k~vlItGas-ggIG~~la~~La~~G-~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~ 101 (293)
T PRK05866 39 TGKRILLTGAS-SGIGEAAAEQFARRG-ATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDL 101 (293)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence 45678877764 44444443 343 4999999988777666555444344677788887653
No 335
>PRK08862 short chain dehydrogenase; Provisional
Probab=92.86 E-value=1.3 Score=27.95 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++.|. ++..+++.+. +|+.++-++..++...+.....+.++..+..|+.+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~ 65 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS 65 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC
Confidence 45688888887765 3344445544 88888888887766655554444455566666654
No 336
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.79 E-value=1.6 Score=27.69 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++. .++..+ ++.+. +|+.++-++...+.........+.++.++.+|+.+.
T Consensus 5 ~~k~~lItGas~-giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 67 (254)
T PRK07478 5 NGKVAIITGASS-GIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDE 67 (254)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence 456777676654 333333 34444 899999888777666555554444677777887653
No 337
>PRK07109 short chain dehydrogenase; Provisional
Probab=92.72 E-value=1.7 Score=29.23 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=38.8
Q ss_pred CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++.++|=.|++ |.++..+ ++.+ .+|+.++-+++.++...+.....+.++.++.+|+.+.
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~ 69 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADA 69 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCH
Confidence 45677877754 4444433 3444 4899999888877766665555555778888887653
No 338
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.65 E-value=1.6 Score=27.43 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.++|=.|+ +|.++..++ +.+ .+|+.++.++..+..+.+.....+.++.+++.|+.+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD 65 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 4668887775 344444433 344 489999988876666555554444467777777654
No 339
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.62 E-value=1.5 Score=27.51 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
+.+++|-.|+ +|.++..++ +.+. +|++++-++.............+.++.++.+|+.+.+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 68 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPE 68 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHH
Confidence 4457787774 555555544 3444 8999998887665554444433346788888887643
No 340
>PRK08589 short chain dehydrogenase; Validated
Probab=92.54 E-value=1.6 Score=28.20 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. ++..+++.+ .+|++++.+ ..+....+.....+.++.++.+|+.+.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G-~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 66 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEG-AYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDE 66 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCH
Confidence 56678877765443 223333444 489999888 444444343433333677777777543
No 341
>PRK06139 short chain dehydrogenase; Provisional
Probab=92.31 E-value=1.7 Score=29.23 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++. .++.. +++.+ .+|+.++-+++.++...+.....+.++.++..|+.+
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC
Confidence 556788777643 33333 33444 489999998888776666655555567777777764
No 342
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.18 E-value=0.49 Score=31.68 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCC-CChHHHHHHh--cCCCeEEEEeCChhHHHHHHH
Q 033605 47 VSNKVVADFGCG-CGTLGAAATL--LGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~--~~~~~v~~vD~s~~~~~~a~~ 89 (115)
.++++||=+||| .|.++..+++ .+..+|+++|.++..++.++.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 467899999976 3444445554 345689999999998888765
No 343
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.02 E-value=2.1 Score=27.37 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++.++|=.|+ +|.++..++ +.+ .+|++++-+++..+.........+.++.++.+|+.+.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAG-ADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence 5678888885 455555444 344 4999999988776655554443334677777877654
No 344
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=91.93 E-value=2.1 Score=27.15 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|+ +|.++..++ +.+ .+|++++-++..++.........+.++.++.+|+.+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~ 71 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDH 71 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCH
Confidence 5678888874 555555554 344 4899999888776665555544444577777887653
No 345
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.92 E-value=2.2 Score=27.19 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.| |+|.++..++ +.+ .+|+.++-++...+.........+.++.++.+|+.+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~ 73 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAAHLEALGIDALWIAADVADE 73 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence 567888888 4556555555 334 4899999888776666655544444677888887653
No 346
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.85 E-value=2.2 Score=27.12 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|=.|++.| ++.. +++.+ .+++.++.+..............+.++.++..|+.+.
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G-~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 72 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence 4678888886544 3333 33444 4888888877766655544443333567777777653
No 347
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.77 E-value=2.2 Score=27.04 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|+ +|.++..++ +.+. +|++++-++...+.+.+.....+.++.++.+|+.+.
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 68 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNE 68 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCH
Confidence 4567775554 445544444 3444 899999988777666665554444677788887653
No 348
>PRK08643 acetoin reductase; Validated
Probab=91.76 E-value=2.2 Score=27.04 Aligned_cols=57 Identities=21% Similarity=0.222 Sum_probs=34.2
Q ss_pred CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++|=.|+. |.++..++ +.+ .+|+.++-++...+.........+.++.++.+|+.+.
T Consensus 3 k~~lItGas-~giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (256)
T PRK08643 3 KVALVTGAG-QGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDR 63 (256)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 456656644 44444443 344 4899998887776665555444334667777777653
No 349
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.66 E-value=2.4 Score=27.36 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. ++..+++.+. +|+.++.+++..+...+.....+.++.++.+|+.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 71 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDK 71 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 45677777765433 2222334444 899999887766555554444444677788887653
No 350
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.62 E-value=0.96 Score=31.27 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=40.6
Q ss_pred CeEEEEcCC-CChHHHH-HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 50 KVVADFGCG-CGTLGAA-ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G-~G~~~~~-~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.+||=|||| .|..... +++.+..+|+..|-+++.++.+...... +++.++.|+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG---KVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc---cceeEEecccCh
Confidence 478889996 4554444 3455557999999999888887766533 678888888765
No 351
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.61 E-value=2.4 Score=27.08 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=36.2
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++.++|=.|++. .++.. +++.+ .+|++++.++..+....... ..+.++.++.+|+.+.
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~ 65 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAG-ARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSE 65 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCH
Confidence 455777777654 44333 33444 48999999887776655444 2233677888887653
No 352
>PRK07062 short chain dehydrogenase; Provisional
Probab=91.60 E-value=2.3 Score=27.19 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. ++..+++.+. +|+.++.+++.++.+.+..... +.++.++.+|+.+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 71 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE 71 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence 56788888865543 2233334444 8999999887776655544332 12567777777653
No 353
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.55 E-value=2.2 Score=26.62 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.+.++|-.| |+|.++..++ +. ..+|++++.++............. .+++++.+|+.+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~ 65 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNK-GNVLGLAADVRD 65 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHC-CCEEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCC
Confidence 356788787 4566655554 33 348999998887665554444322 257777777654
No 354
>PRK08303 short chain dehydrogenase; Provisional
Probab=91.47 E-value=2.2 Score=28.29 Aligned_cols=60 Identities=18% Similarity=0.077 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh----------hHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS----------DSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~----------~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++.|. .+..+++.+ .+|+.++.+. +.++...+.....+.++.++++|+.+.
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G-~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAG-ATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 56788888876553 223333444 4888887762 233333333333343566777777653
No 355
>PRK09242 tropinone reductase; Provisional
Probab=91.46 E-value=2.4 Score=26.90 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~ 107 (115)
+++++|-.|++.| ++.. +++.+ .+|+.++-+++..+......... +.++.++.+|+.+
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLG-ADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 5668888887543 3333 33444 48999998887766655554433 2367778888765
No 356
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.43 E-value=2.5 Score=26.94 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~ 107 (115)
+++++|=.|++.| ++.. +++.+. +|++++.+++..+......... +.++.++..|+.+
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 4568888886443 4433 334444 9999999887776655544432 3367777787754
No 357
>PLN02740 Alcohol dehydrogenase-like
Probab=91.39 E-value=1 Score=30.67 Aligned_cols=46 Identities=30% Similarity=0.432 Sum_probs=32.8
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 44 FGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
....++++||=.|+| .|..+..+++. +..+|+++|.+++.++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 345578899999875 34455555654 44479999999998888865
No 358
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.36 E-value=0.16 Score=35.70 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCChHHHHHH-hcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 48 SNKVVADFGCGCGTLGAAAT-LLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~-~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
.+..+|-+|-|.|.+...+. ..+...++++++.|.|++.+.+.+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 34578889999999988877 46667999999999999999887653
No 359
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=91.30 E-value=0.37 Score=32.36 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=32.5
Q ss_pred CCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 49 NKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
+.++|-.|||.|+++..++..+. .+-|-|.|--|+-...-
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~F 190 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSF 190 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHH
Confidence 56899999999999999998766 67777998888754433
No 360
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.28 E-value=2.1 Score=27.00 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=34.5
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc-CCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL-ELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~v~~~~~d~~~~ 108 (115)
+++-.| |+|.++..++ +.+ .+|++++.++...+...+..... +.+++++++|+.+.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 577666 4455555544 334 48999998887665444433322 22788888887754
No 361
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.18 E-value=2.5 Score=26.58 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.++|=.|+ +|.++..++ +.+ .+|++++-++.....+.......+.++.++.+|+.+
T Consensus 2 ~~~~ilItGa-s~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 63 (250)
T TIGR03206 2 KDKTAIVTGG-GGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD 63 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 3457777775 445544444 333 489999988877666555554444467788888765
No 362
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=0.84 Score=32.46 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeCCh-------------------hHHHHHHHHhhccCC--ceeEEEcc
Q 033605 48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDIDS-------------------DSLELASENAADLEL--DIDFVQCD 104 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~s~-------------------~~~~~a~~~~~~~~~--~v~~~~~d 104 (115)
.+.+||-+||| .|.- ..-++..+..+|..+|++. .-...|.+.+..... ++...+.+
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 66799999998 6663 3344455666777777432 223445555554443 78888888
Q ss_pred ccCCcccCCC
Q 033605 105 IRNLEWRGKY 114 (115)
Q Consensus 105 ~~~~~~~~~f 114 (115)
+.+..+.-.|
T Consensus 91 I~e~~fnv~f 100 (603)
T KOG2013|consen 91 IKEPKFNVEF 100 (603)
T ss_pred ccCcchHHHH
Confidence 8776554333
No 363
>PRK05650 short chain dehydrogenase; Provisional
Probab=91.13 E-value=2.8 Score=26.93 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=33.9
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++|-.|+ +|.++..++ +.+ .+|+.++.++...+.........+.++.++.+|+.+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 61 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREG-WRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDY 61 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence 4665564 444444443 333 4888888887766655554444444677788887653
No 364
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.13 E-value=0.87 Score=33.38 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=37.2
Q ss_pred CCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 49 NKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 49 ~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
..+|+=+||| .|............+++.+|.+++.++.+++. ...++.||..+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~ 455 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMD 455 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHH
Confidence 3577777777 44444443333344899999999999988652 3467888876643
No 365
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.10 E-value=2.3 Score=27.05 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=33.8
Q ss_pred CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++|=.|+ +|.++..++ +.+ .+|+.++.+++.+....+.....+ ++.++.+|+.+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 61 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAA-RVSVYAADVRD 61 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCC
Confidence 35666665 445444444 344 489999988877665544443322 67788888765
No 366
>PRK06949 short chain dehydrogenase; Provisional
Probab=91.08 E-value=2.7 Score=26.65 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=37.7
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++++|-.| |+|.++..++ +.+ .+|++++.+++.++.........+.++.++.+|+.+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 567888887 5555555544 333 489999998887766655544333367777777754
No 367
>PRK05854 short chain dehydrogenase; Provisional
Probab=91.05 E-value=2.5 Score=28.06 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. +..++ +.+ .+|+.+.-+++..+.+.+..... +.++.++.+|+.+.
T Consensus 13 ~gk~~lITGas~GI-G~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 13 SGKRAVVTGASDGL-GLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 56788877765444 44333 444 48999888877665555444332 22678888888664
No 368
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.04 E-value=2.6 Score=26.48 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|+ +|.++..++ +.+ .++++++-+++.+....+.....+.++.++++|+.+.
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 68 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADP 68 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence 4567886664 555555554 334 4899998887766655554443344678888887653
No 369
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.03 E-value=1.5 Score=28.53 Aligned_cols=46 Identities=39% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
...++++||=.|+| .|..+..+++ .+...|+++|.++...+.+++.
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 34467888888875 4444555555 3444599999999888777653
No 370
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.02 E-value=1.4 Score=29.92 Aligned_cols=47 Identities=32% Similarity=0.372 Sum_probs=33.2
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605 44 FGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~ 90 (115)
....++.+||=.|+| .|..+..+++. +..+|+++|.+++..+.+++.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 344567888888875 34455556654 444799999999988887653
No 371
>PRK07791 short chain dehydrogenase; Provisional
Probab=90.93 E-value=2.9 Score=27.31 Aligned_cols=59 Identities=22% Similarity=0.201 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh---------hHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS---------DSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~---------~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|++.|. ++..+++.+. +|+.++.+. ..+....+.....+.++.++..|+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~ 75 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIAD 75 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 56788888876554 2233344444 788887654 44444333333333356677777765
No 372
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.88 E-value=3 Score=26.80 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|. +|.++..++ .. ..+|++++.++..+..........+.++.++.+|+.+
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC
Confidence 5668887774 455544443 33 3489999988776655544444333356677777754
No 373
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=90.86 E-value=2.7 Score=26.37 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++++|=.|+ +|.++..++ +.+ .+|++++-++.............+.++.++.+|+.+
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 66 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRD 66 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 4567886665 455555544 344 489999988766655544444433367888888765
No 374
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.78 E-value=1.5 Score=25.44 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChh
Q 033605 48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSD 82 (115)
Q Consensus 48 ~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~ 82 (115)
+..+++|+|-|.=. .+..+.+.+ ..|+++|+.+.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-FDVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-CcEEEEECccc
Confidence 45599999998655 445555666 59999999997
No 375
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.75 E-value=1.8 Score=28.84 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=33.4
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
....++.+||=.|+| .|..+..+++....++++++.+++..+.+++.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 345578899999975 34445556654345899999999988887764
No 376
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.57 E-value=1.8 Score=27.33 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 47 VSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 47 ~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
.++.+||..|+|. |.....+++....++++++.++...+.++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 5778999999985 5566666654446999999998887776543
No 377
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=90.47 E-value=0.55 Score=30.01 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhh
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
.-++..+++.+...++.+.+|.--|.|..+..+.+ .+..+++++|-+|-+.+.|.....
T Consensus 29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 44566666777777899999999999999999886 455788999999998888776553
No 378
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.43 E-value=1.1 Score=32.39 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=33.4
Q ss_pred CeEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.+++=+||| ..+..++ +....+++.+|.+++.++.+++. ....+.+|+.+.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------GIRAVLGNAANE 471 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCH
Confidence 456656655 4444444 22234899999999998888642 356778887653
No 379
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.36 E-value=1.5 Score=29.69 Aligned_cols=45 Identities=38% Similarity=0.544 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
...++.+||=.|+| .|..+..+++. +..+|+++|.++...+.+++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 44567788888875 34455556654 44479999999998888765
No 380
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.29 E-value=1.7 Score=28.60 Aligned_cols=44 Identities=32% Similarity=0.353 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 46 DVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 46 ~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
..++.+||..|+| .|..+..+++....+|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 4466788888876 4667777776444589999999988877754
No 381
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.27 E-value=3.2 Score=26.41 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=32.8
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++|-.|++ |.++..++ +.+ .+|+.++.+++.++....... +.++.++++|+.+.
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~ 60 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEG-WRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDR 60 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCH
Confidence 56666654 44444433 444 489999888876665544332 23677888887653
No 382
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.24 E-value=0.83 Score=28.11 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=14.9
Q ss_pred HhcCCCeEEEEeCChhHHHHHHH
Q 033605 67 TLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 67 ~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
++.+. +|+|+|++++.++..++
T Consensus 20 A~~G~-~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 20 AEKGH-QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp HHTTS-EEEEE-S-HHHHHHHHT
T ss_pred HhCCC-EEEEEeCChHHHHHHhh
Confidence 34555 99999999998877653
No 383
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.22 E-value=2 Score=28.86 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=33.4
Q ss_pred cCCCCCCeEEEEcCCC-ChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 44 FGDVSNKVVADFGCGC-GTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
....++.+||=.|+|. |..+..+++....+++++|.+++.++.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 3445678999999853 555566665434489999999998888765
No 384
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.13 E-value=2 Score=29.93 Aligned_cols=54 Identities=20% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
...+++=+|+ |.++..+++ .....++.+|.+++.++.++.... ++.++.+|..+
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~----~~~~i~gd~~~ 286 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP----NTLVLHGDGTD 286 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC----CCeEEECCCCC
Confidence 3567887777 555444442 234489999999998887766432 35677777653
No 385
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.00 E-value=3.2 Score=26.48 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=31.2
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++|=.|++. .++..++ +.+ .+|+.++.++..++.+.+.....+ ++.++.+|+.+
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEYG-EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCC
Confidence 456666543 3443333 344 488888888776665555443333 56667777654
No 386
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.97 E-value=4 Score=26.93 Aligned_cols=59 Identities=24% Similarity=0.180 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCCh-hHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++.|. ++..+++.+. +|+.+|.+. ...+...+.....+.++.++.+|+.+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d 73 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQ 73 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 56788877776544 2333444544 888888753 33333333333334467778888765
No 387
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.72 E-value=3.5 Score=25.78 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|++ |.++..++ +.+ .+|++++-+++....+.+.....+ ++.++.+|+.+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEG-AQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCC
Confidence 45688888875 44444443 334 489999998877665544433322 56777888765
No 388
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.72 E-value=3.5 Score=25.90 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.++|=.|++ |.++..+ ++.+. +|++++-++............ +.++.++.+|+.+
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~ 64 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSD 64 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCC
Confidence 45677777754 3444333 34444 799999998766655444432 3357778887754
No 389
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.68 E-value=3.7 Score=26.16 Aligned_cols=57 Identities=19% Similarity=0.386 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++.|. +.. +++.+. +|+.++.+.. +...+.....+.++.++..|+.+.
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~ 67 (251)
T PRK12481 7 NGKVAIITGCNTGL-GQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQ 67 (251)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCH
Confidence 56788888865544 333 334444 8888765432 222233333334677788887653
No 390
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=89.67 E-value=3.7 Score=26.04 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|=.|++ |.++..++ +.+ .+|+.++.++..+..........+.++.++.+|+.+.
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G-~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~ 70 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYG-AEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHK 70 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCH
Confidence 56678877754 44444433 444 4899999887766555444443333566777777553
No 391
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.34 E-value=4 Score=25.99 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=34.4
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++|=.| |+|.++..++ +.+ .+|++++-++...+...+.....+.++.++.+|+.+.
T Consensus 3 ~vlVtG-asg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~ 62 (263)
T PRK06181 3 VVIITG-ASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDA 62 (263)
T ss_pred EEEEec-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCH
Confidence 566555 4455555544 333 4899999887666555544444444677778887653
No 392
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=89.13 E-value=4.2 Score=25.90 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=34.0
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|=.|++.|. ++..+++.+. +|+.++.++ ..+.+.+.....+.++.++.+|+.+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~ 75 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEGRKVTFVQVDLTKP 75 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 56788888876544 2233334444 888887763 33334443333333677788887653
No 393
>PRK09291 short chain dehydrogenase; Provisional
Probab=89.05 E-value=4.1 Score=25.76 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=33.6
Q ss_pred CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++|=.|+ +|.++..++ +.+ .+|+++.-++.............+.++.++.+|+.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 62 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD 62 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC
Confidence 36776665 444444443 333 589998887766555544444334467777787755
No 394
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=89.04 E-value=1.5 Score=31.26 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCCChHHHHHHh---cC--CCeEEEEeCChhHHHHHHHHhh
Q 033605 48 SNKVVADFGCGCGTLGAAATL---LG--ADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~---~~--~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
+...+.|+.||+|.+.....+ .+ ...++|.|..+.+...++.+..
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 446899999999998876542 11 2479999999999999998753
No 395
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.97 E-value=2.6 Score=28.03 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=31.6
Q ss_pred hcCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHHH
Q 033605 43 SFGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~ 90 (115)
.....++.+||=.|+| .|..+..+++. +..+|++++.+++..+.+++.
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ 207 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL 207 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 3344567888888765 33344555553 443499999999888877553
No 396
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.93 E-value=2.2 Score=28.73 Aligned_cols=45 Identities=44% Similarity=0.680 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
...++.+||=.|+| .|..+..+++. +..+|+++|.++...+.+++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34567888888875 34455556654 44469999999998888765
No 397
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=88.82 E-value=5.1 Score=26.55 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|+. |.++..++ +.+ .+|+.++-++...+.+.+.....+.++.++.+|+.+.
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~ 67 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDL 67 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCH
Confidence 45677777754 44444444 344 4899998877666554444332222677888887653
No 398
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=88.61 E-value=0.92 Score=34.06 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=38.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHhh
Q 033605 47 VSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASENAA 92 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~ 92 (115)
..+..++|...|-|.+.++.++.+. .|+++|++|.+.-..+..+.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHHHHHHh
Confidence 3567899999999999999999975 99999999999887776554
No 399
>PLN02780 ketoreductase/ oxidoreductase
Probab=88.60 E-value=3.9 Score=27.30 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhcc-C-CceeEEEcccc
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADL-E-LDIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~-~~v~~~~~d~~ 106 (115)
.+.++|=.|++.|. ++..+++.+. +|+.++.+++.++...+..... + .++..+..|+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 35688888865543 3333444544 8999999998877665554432 2 25666667765
No 400
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=88.56 E-value=4.7 Score=25.75 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++.|. +.. +++.+ .+|+.++-++..++...+.. +.++.++++|+.+
T Consensus 5 ~~k~vlVtGas~gI-G~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~ 63 (263)
T PRK06200 5 HGQVALITGGGSGI-GRALVERFLAEG-ARVAVLERSAEKLASLRQRF---GDHVLVVEGDVTS 63 (263)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh---CCcceEEEccCCC
Confidence 56688888865433 333 33444 48999998877665544332 2245667777654
No 401
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.54 E-value=0.65 Score=26.27 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=26.7
Q ss_pred CCChHHHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605 58 GCGTLGAAATLLGADQVIAIDIDSDSLELASENA 91 (115)
Q Consensus 58 G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~ 91 (115)
|.|..+..+++....+|+++|.++..++.+++.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G 34 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG 34 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc
Confidence 4577788888643479999999999998887643
No 402
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.54 E-value=1.7 Score=31.73 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=34.0
Q ss_pred CeEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCCc
Q 033605 50 KVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNLE 109 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 109 (115)
.+|+=+|+ |+.+..++ .....+++.+|.+++.++.+++. ...++.||+.+.+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~ 455 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------GYKVYYGDATQLE 455 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHH
Confidence 45655554 55554444 22344899999999999988652 3467888876543
No 403
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.44 E-value=5.2 Score=26.18 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCChHHHH----HHhcCCCeEEEEeCChh-HHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAA----ATLLGADQVIAIDIDSD-SLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~----~~~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++. .++.. +++.+ .+|+.++.++. ..+.........+.++.++.+|+.+.
T Consensus 45 ~~k~iLItGasg-gIG~~la~~l~~~G-~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 108 (290)
T PRK06701 45 KGKVALITGGDS-GIGRAVAVLFAKEG-ADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDE 108 (290)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCC-CEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCH
Confidence 567888888644 33433 33444 48888877643 23333333333344677888887653
No 404
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.43 E-value=4.7 Score=25.60 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++.++|-.|++ |.++..++ +.+. +|++++-++...+...+..... ++.++.+|+.+
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCC
Confidence 367789988875 55554444 3444 8999998877665544433221 45677777654
No 405
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.13 E-value=5.6 Score=26.15 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~~ 109 (115)
.++++|=.|+ +|.++..++ +.+. +|+.++-++.....+.+..... +.++.++.+|+.+.+
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~ 80 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLA 80 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHH
Confidence 5677886665 445554444 3444 8888888776665544443322 226778888886643
No 406
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.03 E-value=4.8 Score=25.23 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.+.++|=.|+ +|.++..++ +.+. +|+.++-++...+.........+.++.++.+|+.+.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 68 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDY 68 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCH
Confidence 3457777774 666666554 3344 899999887765554443333333677788887543
No 407
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.79 E-value=5 Score=25.25 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=36.5
Q ss_pred CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhcc--CCceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADL--ELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~v~~~~~d~~~~ 108 (115)
+++|-.| |+|.++..++ +.+ .+|+.++-++...+......... +.++.++.+|+.+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 4677666 4566665555 333 58999998887776655544332 23678888887754
No 408
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=87.77 E-value=3.4 Score=27.96 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=31.3
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 44 FGDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
....++.+||=.|+| .|..+..+++. +..+|++++.+++..+.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345578888888864 33344555553 44489999999988887754
No 409
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.68 E-value=3.6 Score=27.85 Aligned_cols=45 Identities=36% Similarity=0.491 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
...++.+||=.|+| .|..+..+++. +...|+++|.+++..+.+++
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 44577888888865 34445555554 44479999999998887754
No 410
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.64 E-value=3.8 Score=27.54 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeC---ChhHHHHHHH
Q 033605 47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDI---DSDSLELASE 89 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~---s~~~~~~a~~ 89 (115)
.++.+||=.|+| .|.++..+++....+|++++. ++...+.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 467789988876 455566666543448999986 6777776654
No 411
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.63 E-value=5.1 Score=25.13 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
+++++|=.|+ +|.++..++ +.+ .+|++++-++...+.........+. .+.++..|+.
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 5568888885 444444444 333 4899999888766555444432221 3455556553
No 412
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.63 E-value=1.1 Score=25.58 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCCCh-HHHHHHhcCCCeEEEEeCChh
Q 033605 48 SNKVVADFGCGCGT-LGAAATLLGADQVIAIDIDSD 82 (115)
Q Consensus 48 ~~~~vLDlG~G~G~-~~~~~~~~~~~~v~~vD~s~~ 82 (115)
...+|+|+|-|-=. .+..+++++. .++++|+++.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~ 47 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK 47 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence 44599999877544 3455556664 9999999997
No 413
>PRK08265 short chain dehydrogenase; Provisional
Probab=87.61 E-value=5.5 Score=25.48 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++ |.++..+ ++.+. +|+.++.++...+...+.. +.++.++.+|+.+.
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~ 64 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDD 64 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCH
Confidence 45678877754 3444333 34444 8999998876544433322 22577778887654
No 414
>PRK05855 short chain dehydrogenase; Validated
Probab=87.58 E-value=5.7 Score=28.36 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.+.++|=+|+ +|.++..++ +.+. +|+.++-++...+...+.....+.++.++.+|+.+.
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 376 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDA 376 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 3466776665 555555444 3444 899999988777666555554444678888888654
No 415
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.55 E-value=2.2 Score=30.64 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
.++.+++=+|+| .|..+..+++...+.|+++|.++..++.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 356899999999 4566666665434479999999998887765
No 416
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.54 E-value=5.3 Score=25.22 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCCeEEEEcCCCChHHHHHHhc---CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAATLL---GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.| |+|.++..+++. ...+|++++-++.............+.++.++.+|+.+
T Consensus 3 ~~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 64 (258)
T PRK12429 3 KGKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD 64 (258)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 345677555 456666666531 23489999988877666555544444467778887754
No 417
>PRK06720 hypothetical protein; Provisional
Probab=87.41 E-value=4.6 Score=24.41 Aligned_cols=59 Identities=29% Similarity=0.349 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|.+.|. ....+++.+ .+|+.+|.++.......+.....+..+.++..|+.+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 76 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEK 76 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 55677777765543 223333444 489889988776655544443333355666777654
No 418
>PRK07201 short chain dehydrogenase; Provisional
Probab=87.28 E-value=6.8 Score=28.71 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|=.|+ +|.++..++ +.+ .+|+.++-+++.++.........+.++.++.+|+.+.
T Consensus 370 ~~k~vlItGa-s~giG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 432 (657)
T PRK07201 370 VGKVVLITGA-SSGIGRATAIKVAEAG-ATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDS 432 (657)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCH
Confidence 3556776665 445554444 344 4999999988877666555544444678888887654
No 419
>PLN02827 Alcohol dehydrogenase-like
Probab=87.22 E-value=3.9 Score=27.95 Aligned_cols=45 Identities=31% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~ 89 (115)
...++.+||=.|+| .|.....+++ .+...|+++|.++...+.+++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 44568899988865 3444455554 454469999999988877754
No 420
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.17 E-value=6.1 Score=26.39 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCC-CChHHHHHH-hcCCCeEEEEeCChhHHHH
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCG-CGTLGAAAT-LLGADQVIAIDIDSDSLEL 86 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~-~~~~~~v~~vD~s~~~~~~ 86 (115)
....++......+..++.+|+=+|+| .|......+ ..+...|+.++.+++....
T Consensus 162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 162 SSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred HHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 33334444444444578899999986 444433333 3355689999999876533
No 421
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=87.12 E-value=0.22 Score=27.18 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=11.1
Q ss_pred eEEEEcCCCChHHHH
Q 033605 51 VVADFGCGCGTLGAA 65 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~ 65 (115)
-=+|||||.|..--.
T Consensus 5 gNIDIGcG~GNTmda 19 (124)
T PF07101_consen 5 GNIDIGCGAGNTMDA 19 (124)
T ss_pred CccccccCCCcchhh
Confidence 457999999986433
No 422
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=87.08 E-value=5.7 Score=25.08 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=30.7
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++|=.|+ +|.++..++ +.+ .+|+.++-++.......+.....+.++.++.+|+.+
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~ 60 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDG-FAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD 60 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 4555564 444444443 333 478888877665555444444334456777777654
No 423
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.00 E-value=6.8 Score=25.90 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCChH-H--HHHHhcCCCeEEEEeCCh
Q 033605 47 VSNKVVADFGCGCGTL-G--AAATLLGADQVIAIDIDS 81 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~-~--~~~~~~~~~~v~~vD~s~ 81 (115)
.+++++|=+|+| |.- + ..++..+..+|+.++.++
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 356789999997 442 2 223355666799999886
No 424
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.70 E-value=5.8 Score=27.92 Aligned_cols=41 Identities=27% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHH
Q 033605 47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELA 87 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a 87 (115)
..+++|+=+|+| .|......++....+|+.+|.++.....+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A 251 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA 251 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH
Confidence 378899999998 44444444443344999999998765444
No 425
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.68 E-value=5.6 Score=27.43 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=39.9
Q ss_pred HHHhcCCCCCCeEEEEcCCCChHHHHH----Hhc----CCCeEEEEeC----ChhHHHHHHHHhhc----cCCceeEEE
Q 033605 40 AENSFGDVSNKVVADFGCGCGTLGAAA----TLL----GADQVIAIDI----DSDSLELASENAAD----LELDIDFVQ 102 (115)
Q Consensus 40 ~~~~~~~~~~~~vLDlG~G~G~~~~~~----~~~----~~~~v~~vD~----s~~~~~~a~~~~~~----~~~~v~~~~ 102 (115)
|++.....+.-+|+|+|.|.|.--..+ +.. +.-++||++. +...++...+++.+ .++..+|..
T Consensus 102 IleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~ 180 (374)
T PF03514_consen 102 ILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHP 180 (374)
T ss_pred HHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEe
Confidence 444444556679999999999844333 332 1248999999 77777666666543 344444444
No 426
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.58 E-value=6 Score=24.89 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.||. |.++..++ +.+ .+|++++-++........... .+.++.++.+|+.+.
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~ 65 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSA 65 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCH
Confidence 45678878874 44444433 444 489999877766554444333 233677888887653
No 427
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.56 E-value=6.1 Score=24.92 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCC-ceeEEEcccc
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIR 106 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~ 106 (115)
+++++|=.|+ +|.++..++ +.+ .+|++++-++.............+. ++.++.+|+.
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 6678888884 555555444 333 4999999988766555544443332 5666666664
No 428
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.42 E-value=0.42 Score=31.38 Aligned_cols=52 Identities=17% Similarity=0.097 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 34 SRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
..++..+++.+|... +.+|+.||.|+..+.+... .+++.-|++++.+..-+.
T Consensus 13 ~~l~~~i~~~lP~~~--~y~EPF~GggaV~i~~~~~--~~~i~~Din~~Lvn~y~~ 64 (274)
T COG0338 13 SKLLDQIIPHLPEGV--SYIEPFVGGGAVFINLAAK--KKYILNDINPDLVNLYNI 64 (274)
T ss_pred HHHHHHHHHhCCCCc--eeeCCccCcceeeeehhhh--hhhhHhcCCHHHHHHHHH
Confidence 345666777766433 9999999999999888653 488999999999865443
No 429
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=86.28 E-value=3.4 Score=21.76 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChH-HHHHH-hcC-CCeEEEEeCCh
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTL-GAAAT-LLG-ADQVIAIDIDS 81 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~-~~~~~-~~~-~~~v~~vD~s~ 81 (115)
.++.+...-...-+++||-+||-+|+- +..++ .++ .+..+|+-...
T Consensus 26 qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 26 QIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 344443332333457999999999983 33333 333 35788876543
No 430
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.15 E-value=7 Score=25.18 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCC
Q 033605 49 NKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNL 108 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~ 108 (115)
+.++|-.|++ |.++..+ ++.+ .+|++++-++...+.........+ .+++++.+|+.+.
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 3467777753 3334333 3444 489999877766655544333322 2678888888653
No 431
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.15 E-value=2.3 Score=27.73 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=35.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhH----HHHHHHHh
Q 033605 45 GDVSNKVVADFGCGCGTLGAAATLL--GADQVIAIDIDSDS----LELASENA 91 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~----~~~a~~~~ 91 (115)
-..++.+||=||+++|....+++.. +..-|+++|.|+.. +..|+++.
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt 205 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT 205 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC
Confidence 4457889999999999999988863 33579999998755 44444443
No 432
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.11 E-value=2.7 Score=29.31 Aligned_cols=42 Identities=26% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605 47 VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELAS 88 (115)
Q Consensus 47 ~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~ 88 (115)
..+++|+=+|+| .|......++....+|+++|.++.....+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~ 235 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA 235 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH
Confidence 478899999999 455555555543458999999987654443
No 433
>PLN02253 xanthoxin dehydrogenase
Probab=86.08 E-value=7.1 Score=25.19 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|=.|+ +|.++..++ +.+ .+|+.++.++...+........ +.++.++.+|+.+.
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~ 78 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHG-AKVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVE 78 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCH
Confidence 4567887774 455555444 343 4899999887665544433321 22577788887653
No 434
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=85.68 E-value=7.1 Score=24.81 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.|. ++..+++.+ .+|+.++.++. ...........+.++.++.+|+.+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G-~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~ 68 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEG-ARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETY 68 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCH
Confidence 55678877765433 223333444 48888888753 2223333333333566777777653
No 435
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.63 E-value=6 Score=25.17 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=31.3
Q ss_pred eEEEEcCC-CChHH-HHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 51 VVADFGCG-CGTLG-AAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 51 ~vLDlG~G-~G~~~-~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++=+||| .|+.. ..|++.+. .|+.+|.+++.++.....-. .+..+++|..+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~ 55 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADEL----DTHVVIGDATD 55 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhc----ceEEEEecCCC
Confidence 45666776 34432 33334445 99999999998877433111 35667777654
No 436
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.57 E-value=7.1 Score=24.77 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.++|=.|++ |.++..++ +.+ .+++.++-++...+.. +.....+.++.++.+|+.+
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~ 66 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEG-AIPVIFGRSAPDDEFA-EELRALQPRAEFVQVDLTD 66 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcC-CcEEEEcCChhhHHHH-HHHHhcCCceEEEEccCCC
Confidence 45677777754 44554444 344 4788888777655333 2233334467788888764
No 437
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.38 E-value=1.7 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=47.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccC-----CceeEEEccc
Q 033605 46 DVSNKVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLE-----LDIDFVQCDI 105 (115)
Q Consensus 46 ~~~~~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-----~~v~~~~~d~ 105 (115)
...++++|=+|.|.|.......++. ..++.-+|+....++..++.....- .++.+.-||.
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG 184 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG 184 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH
Confidence 3578899999999999998888763 3689999999999999888766432 2677777763
No 438
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.28 E-value=2.2 Score=28.14 Aligned_cols=42 Identities=19% Similarity=0.073 Sum_probs=29.5
Q ss_pred CCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHH
Q 033605 48 SNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~ 89 (115)
++.++|=+||| .|.++..+++ .+...|+++|.++..++.+..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 56678888876 5556666665 455557788999888777654
No 439
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=85.25 E-value=7.5 Score=24.77 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=43.6
Q ss_pred CCCCCCeEEEEcCCCCh--HHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 45 GDVSNKVVADFGCGCGT--LGAAAT---LLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~G~--~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
...+-+.+++..|+.|. .++.|+ ++...++++|-..+..+...++.....+. -++|+.++.
T Consensus 38 AG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 38 AGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred ccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 44566789999766443 344443 45566999999999988888888877766 368888773
No 440
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.17 E-value=3.1 Score=25.43 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=25.0
Q ss_pred EEEEcCCCCh--HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 52 VADFGCGCGT--LGAAATLLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 52 vLDlG~G~G~--~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
|.=+|+|+=. ++..++..+ -+|+.+|.+++.++.+++....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHHHH
Confidence 4446776322 223333454 4999999999999888776554
No 441
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.16 E-value=5.4 Score=26.98 Aligned_cols=45 Identities=33% Similarity=0.503 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
...++.+||=.|+| .|..+..+++. +..+|+++|.++...+.+++
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 44567888888765 33444555553 44479999999988887754
No 442
>PRK05872 short chain dehydrogenase; Provisional
Probab=85.02 E-value=8.6 Score=25.22 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCCChHHHHH----HhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAA----TLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|++.| ++..+ ++.+ .+|+.++.+++.++...+.... +..+..+.+|+.+
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~~G-~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d 68 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHARG-AKLALVDLEEAELAALAAELGG-DDRVLTVVADVTD 68 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCC
Confidence 5678887775543 33333 3444 4899999888776655444332 2244555566654
No 443
>PRK07774 short chain dehydrogenase; Provisional
Probab=84.78 E-value=7.6 Score=24.43 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.| |+|.++..++ +.+ .+|++++-++.............+.++.++..|+.+.
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 67 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDP 67 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCH
Confidence 456777777 4555555554 344 4899999887655544444333232566777777654
No 444
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.68 E-value=5 Score=25.30 Aligned_cols=45 Identities=27% Similarity=0.197 Sum_probs=34.7
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
....+..+|-+|.- +|.+...++.. ..+|+.+|+.|.|......+
T Consensus 41 ~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp~~ 86 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLPNN 86 (254)
T ss_pred cccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCCCC
Confidence 34577899999987 88888877765 55999999999887655443
No 445
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=84.63 E-value=7.8 Score=24.40 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=34.3
Q ss_pred eEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++|=.| |+|.++..++ +.+. +|++++-++...+.........+.++.++.+|+.+.
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 62 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKE 62 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCH
Confidence 456555 4556555555 3344 899999887766555554433333677777777653
No 446
>PRK06153 hypothetical protein; Provisional
Probab=84.48 E-value=2 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=25.9
Q ss_pred CCCeEEEEcCC-CChHHHH-HHhcCCCeEEEEeCC
Q 033605 48 SNKVVADFGCG-CGTLGAA-ATLLGADQVIAIDID 80 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~~~~-~~~~~~~~v~~vD~s 80 (115)
+..+|+=+||| +|..... +++.+..+++.+|.+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 66799999998 7776555 557788899999954
No 447
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.40 E-value=9 Score=24.92 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCC-ChHHHH----HHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGC-GTLGAA----ATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~-G~~~~~----~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++. +.++.. +++.+. +|+.++.+....+.+++.....+.. .+++.|+.+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~ 67 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKP 67 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCH
Confidence 456888888752 333333 334444 8888887753222333322222223 4566776653
No 448
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.39 E-value=3.7 Score=26.32 Aligned_cols=46 Identities=28% Similarity=0.291 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCC-ChHHHHHHhcCCCe-EEEEeCChhHHHHHHHH
Q 033605 45 GDVSNKVVADFGCGC-GTLGAAATLLGADQ-VIAIDIDSDSLELASEN 90 (115)
Q Consensus 45 ~~~~~~~vLDlG~G~-G~~~~~~~~~~~~~-v~~vD~s~~~~~~a~~~ 90 (115)
...++.++|-.|+|. |..+..+++....+ +++++.+++..+.+++.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 445678888888763 55556666543345 99999998888776654
No 449
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.37 E-value=1.7 Score=28.05 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=37.0
Q ss_pred CeEEEEcCCCChHHHHHHhc--C----C----CeEEEEeCChhH--------------HHHHHHHhhccCC-ceeEEEcc
Q 033605 50 KVVADFGCGCGTLGAAATLL--G----A----DQVIAIDIDSDS--------------LELASENAADLEL-DIDFVQCD 104 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~--~----~----~~v~~vD~s~~~--------------~~~a~~~~~~~~~-~v~~~~~d 104 (115)
.+++|++...|.++..+++. . . ..+++||+.+.+ ...++..+...+. ..++|.+|
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcD 122 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCD 122 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeC
Confidence 58999999999999888842 1 1 139999998854 2444444444443 56666655
No 450
>PRK08278 short chain dehydrogenase; Provisional
Probab=84.35 E-value=8.8 Score=24.79 Aligned_cols=59 Identities=17% Similarity=0.149 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhH-------HHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDS-------LELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~-------~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++. .++..++ +.+ .+|+.++-+... +....+.....+.++.++.+|+.+.
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~ 74 (273)
T PRK08278 5 SGKTLFITGASR-GIGLAIALRAARDG-ANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDE 74 (273)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC-CEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCH
Confidence 456788777654 4444443 444 488888865431 2222233333344677788887654
No 451
>PRK06198 short chain dehydrogenase; Provisional
Probab=84.15 E-value=8.4 Score=24.43 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=34.2
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++ |.++..++ +.+...|+.++-++.............+.++.++..|+.+
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~ 67 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD 67 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC
Confidence 56678877754 44554444 3444338999887665544333333333356777777765
No 452
>PRK05599 hypothetical protein; Provisional
Probab=84.13 E-value=8.5 Score=24.43 Aligned_cols=36 Identities=6% Similarity=0.146 Sum_probs=19.7
Q ss_pred CeEEEEeCChhHHHHHHHHhhccCC-ceeEEEccccC
Q 033605 72 DQVIAIDIDSDSLELASENAADLEL-DIDFVQCDIRN 107 (115)
Q Consensus 72 ~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~ 107 (115)
.+|+.++-+++.++...+.....+. .+.++.+|+.+
T Consensus 24 ~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d 60 (246)
T PRK05599 24 EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQD 60 (246)
T ss_pred CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCC
Confidence 4666666666655555444433332 35566666654
No 453
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.94 E-value=6 Score=27.59 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=32.4
Q ss_pred eEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 51 VVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+|+=+|+ |..+..+++ .....++++|.+++.++.++... .+.++.+|..+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----~~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----DVRTVVGNGSS 54 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----CEEEEEeCCCC
Confidence 4555555 677666663 22348999999999877765422 35666777643
No 454
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=83.89 E-value=11 Score=26.48 Aligned_cols=51 Identities=27% Similarity=0.319 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCC-CChHHHHHH-hcCCCeEEEEeCChhHHHH
Q 033605 36 MLYTAENSFGDVSNKVVADFGCG-CGTLGAAAT-LLGADQVIAIDIDSDSLEL 86 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~-~~~~~~v~~vD~s~~~~~~ 86 (115)
-++.....++..++.+|+=+|+| .|......+ ..+...++.++.++.....
T Consensus 169 Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~ 221 (423)
T PRK00045 169 AVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEE 221 (423)
T ss_pred HHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH
Confidence 34433333334577899999987 444444333 3555689999999877553
No 455
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=83.87 E-value=9.6 Score=24.86 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChh-HHHHHHHHhhcc----CCceeEEEcccc
Q 033605 33 ASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSD-SLELASENAADL----ELDIDFVQCDIR 106 (115)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~-~~~~a~~~~~~~----~~~v~~~~~d~~ 106 (115)
..+.++..+..........|+.||||--.-...+.... .+...|++-. .++.-++.+... ..+.+++..|+.
T Consensus 66 Rtr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~--~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 66 RTRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPD--GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCC--CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 44555555544332234469999999888777664322 3445555444 333333344432 227888888875
No 456
>PRK07831 short chain dehydrogenase; Provisional
Probab=83.76 E-value=9 Score=24.43 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=36.5
Q ss_pred CCCeEEEEcCC---CChH-HHHHHhcCCCeEEEEeCChhHHHHHHHHhhc-cCC-ceeEEEccccC
Q 033605 48 SNKVVADFGCG---CGTL-GAAATLLGADQVIAIDIDSDSLELASENAAD-LEL-DIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G---~G~~-~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~v~~~~~d~~~ 107 (115)
+++++|=.|++ .|.. +..+++.+. +|+.+|.++..++...+.... .+. ++.++.+|+.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 45678888853 3443 333334544 799999888777666554433 232 57778888765
No 457
>PRK07775 short chain dehydrogenase; Provisional
Probab=83.71 E-value=9.4 Score=24.64 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+.+++|=.|+ +|.++..++ +.+ .+|+.++-++.............+.++.++.+|+.+.
T Consensus 9 ~~~~vlVtGa-~g~iG~~la~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 71 (274)
T PRK07775 9 DRRPALVAGA-SSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDP 71 (274)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 3457777775 456555555 334 4788887776655544444433333567777777643
No 458
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=83.60 E-value=9 Score=24.34 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|-.|+. |.++..++ +. ..+|++++.++. ....+.....+.++..+..|+.+
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~-G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~ 68 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEA-GCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRK 68 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC-CCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCC
Confidence 56688888865 44444444 34 348888887543 11112222223356677777754
No 459
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=83.54 E-value=12 Score=26.23 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCC-CChHHHHHH-hcCCCeEEEEeCChhHHH
Q 033605 37 LYTAENSFGDVSNKVVADFGCG-CGTLGAAAT-LLGADQVIAIDIDSDSLE 85 (115)
Q Consensus 37 ~~~~~~~~~~~~~~~vLDlG~G-~G~~~~~~~-~~~~~~v~~vD~s~~~~~ 85 (115)
++.........++.+|+=+|+| .|......+ ..+..+|+.++.++....
T Consensus 168 v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 168 VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE 218 (417)
T ss_pred HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 3344444444578899999986 444333333 455468999999987654
No 460
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=83.51 E-value=8.8 Score=24.15 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|=.|++.| ++..++ +.+. +|++++-++. ..+.+.....+.++.++..|+.+.
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~ 64 (248)
T TIGR01832 4 EGKVALVTGANTG-LGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDI 64 (248)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCH
Confidence 5678888887543 343333 4444 8888886542 223333333333567777777653
No 461
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=83.48 E-value=8.5 Score=23.98 Aligned_cols=41 Identities=29% Similarity=0.398 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHH
Q 033605 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
.++++++=+|.| .++..++ +.+ .+|++.|.+++.+......
T Consensus 26 l~gk~v~I~G~G--~vG~~~A~~L~~~G-~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 26 LEGKTVAVQGLG--KVGYKLAEHLLEEG-AKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHH
Confidence 467899999987 4444444 344 4999999999887776554
No 462
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.43 E-value=9.8 Score=24.65 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=34.2
Q ss_pred eEEEEcCCCChHHHHHHhc--CCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 51 VVADFGCGCGTLGAAATLL--GADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 51 ~vLDlG~G~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
++|=-|+ |.++..+++. ...+|+.++.++..++...+.....+.++.++.+|+.+.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~ 61 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSR 61 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCH
Confidence 4554554 4566666531 235899999887766555544443344677788887654
No 463
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=83.38 E-value=6.7 Score=25.88 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=33.0
Q ss_pred cCCCCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 44 FGDVSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 44 ~~~~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
....++.+||-.|+| .|..+..+++....++++++.++...+.+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK 204 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 344567788888886 6666666665444589999999988777644
No 464
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.13 E-value=3.3 Score=27.47 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccccCCcc
Q 033605 48 SNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDIRNLEW 110 (115)
Q Consensus 48 ~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 110 (115)
.+++||=-||-+|. ++..+++.+. +++-+--....++...+...+... ++..+++|+.+.+-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~ 77 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEES 77 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHH
Confidence 67889999988776 4455556655 666666667777766444444333 49999999987653
No 465
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.11 E-value=8.5 Score=25.46 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=33.9
Q ss_pred hcCCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 43 SFGDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 43 ~~~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
.....++.+||=.|. |.|..+..+++....++++++-+++..+.+++
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 334557789988884 46777777776545589999988887777754
No 466
>PRK05717 oxidoreductase; Validated
Probab=83.09 E-value=9.5 Score=24.21 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 47 VSNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.+++++|=.|++ |.++..++ +.+ .+|+.+|.++.......+.. +.++.++.+|+.+
T Consensus 8 ~~~k~vlItG~s-g~IG~~~a~~l~~~g-~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~ 67 (255)
T PRK05717 8 HNGRVALVTGAA-RGIGLGIAAWLIAEG-WQVVLADLDRERGSKVAKAL---GENAWFIAMDVAD 67 (255)
T ss_pred cCCCEEEEeCCc-chHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHc---CCceEEEEccCCC
Confidence 356778867653 45444444 344 48999988765443332221 2256677777765
No 467
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=83.04 E-value=7.6 Score=26.20 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHH
Q 033605 45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELAS 88 (115)
Q Consensus 45 ~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~ 88 (115)
...++.+||=.|+ |.|..+..+++....+|++++.+++..+.++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 4457889998887 3677777777654558999999988877765
No 468
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=82.86 E-value=9.9 Score=24.26 Aligned_cols=55 Identities=24% Similarity=0.232 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|++ |.++..++ +.+ .+|+.++-+++.++..... .+.++.++.+|+.+
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~ 62 (262)
T TIGR03325 4 KGEVVLVTGGA-SGLGRAIVDRFVAEG-ARVAVLDKSAAGLQELEAA---HGDAVVGVEGDVRS 62 (262)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHhh---cCCceEEEEeccCC
Confidence 45677777764 34444433 444 4899998877655544332 22256666676654
No 469
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.77 E-value=5.5 Score=27.37 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 033605 48 SNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
++.+|+=+|+| .|..+...+.....+|+++|.++...+.+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE 209 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh
Confidence 55678888887 45555555543234899999998876665443
No 470
>PRK06196 oxidoreductase; Provisional
Probab=82.76 E-value=11 Score=24.87 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|=.|++ |.++..++ +.+ .+|++++-+++..+....... ++.++.+|+.+.
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~ 83 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAG-AHVIVPARRPDVAREALAGID----GVEVVMLDLADL 83 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCH
Confidence 56788888864 55555544 344 489999988776554433322 356777777654
No 471
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=82.74 E-value=4.6 Score=27.91 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCCCeEEEEc-CC-CChHHHHHHhc---CCCeEEEEeCChhHHHHHHHH
Q 033605 46 DVSNKVVADFG-CG-CGTLGAAATLL---GADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 46 ~~~~~~vLDlG-~G-~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~ 90 (115)
..++.+|+=+| +| .|..+..+++. +..+|+++|.++..++.+++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 34567888886 34 66677767754 335899999999999988875
No 472
>PRK09186 flagellin modification protein A; Provisional
Probab=82.40 E-value=10 Score=23.99 Aligned_cols=58 Identities=31% Similarity=0.471 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhc-cCC-ceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-LEL-DIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~-~v~~~~~d~~~ 107 (115)
+++++|=.|++ |.++..++ +.+ .+|++++.+++.++........ .+. .+.++.+|+.+
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 66 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAG-GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD 66 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC
Confidence 45677777764 33444433 333 4888888887766655544422 122 45666778765
No 473
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=82.31 E-value=5.3 Score=26.07 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
++..+...++. ...+.+|+.||.|...+.+. ...++.-|+++..+..-+.
T Consensus 14 l~~~i~~~~p~-~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li~~~~~ 63 (266)
T TIGR00571 14 LLPEIKKHLPK-NFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLINLYKA 63 (266)
T ss_pred HHHHHHHhcCc-ccCEEEEecCCcchhheeec---CcEEEEecCCHHHHHHHHH
Confidence 44555555553 23589999999999988653 2358889999998865443
No 474
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.29 E-value=7.6 Score=25.77 Aligned_cols=43 Identities=33% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCC-ChHHHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 033605 47 VSNKVVADFGCGC-GTLGAAATLL-GADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 47 ~~~~~vLDlG~G~-G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~ 89 (115)
.++.+||-.|||. |..+..+++. +..++++++.++...+.+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 3678888888763 5566666654 43479999998887776554
No 475
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=82.22 E-value=12 Score=24.83 Aligned_cols=59 Identities=20% Similarity=0.110 Sum_probs=30.7
Q ss_pred CeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 50 KVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++|-.|++.|. ++..+++.+..+|+.+.-+++..+.+.+.....+.++.++.+|+.+.
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~ 65 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSL 65 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 466666655433 12223344424787777766655544443332222566666776543
No 476
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.05 E-value=1.8 Score=28.60 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHhcCCCeEEEEeCChhH
Q 033605 46 DVSNKVVADFGCGCGTLGAAATLLGADQVIAIDIDSDS 83 (115)
Q Consensus 46 ~~~~~~vLDlG~G~G~~~~~~~~~~~~~v~~vD~s~~~ 83 (115)
..+++..+|+|...|..+..+.+.+- .|+++|--+.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma 245 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMA 245 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhh
Confidence 35688999999999999999988755 99999977743
No 477
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=81.93 E-value=11 Score=23.98 Aligned_cols=56 Identities=21% Similarity=0.116 Sum_probs=33.3
Q ss_pred CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhc-cC-CceeEEEccccC
Q 033605 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAAD-LE-LDIDFVQCDIRN 107 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~-~~v~~~~~d~~~ 107 (115)
+++|-.|+ +|.++..++ +.+ .+|+.+|.++...+........ .+ .++.++.+|+.+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEG-YRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 46777775 455444443 444 4899999887666554433322 22 257778888765
No 478
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=81.86 E-value=0.61 Score=33.12 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=47.4
Q ss_pred CCCCeEEEEcCCCChHHHHHHh-c-CCCeEEEEeCChhHHHHHHHHhhccCC--ceeEEEccc
Q 033605 47 VSNKVVADFGCGCGTLGAAATL-L-GADQVIAIDIDSDSLELASENAADLEL--DIDFVQCDI 105 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~~~~~~~~-~-~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~ 105 (115)
.++.+|||.-|++|.-++..+. . +...|++.|.++..+...+.++..++. .++..+.|+
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA 170 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDA 170 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchH
Confidence 3567999999999999988885 3 457999999999999999999888754 355555554
No 479
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.74 E-value=9.7 Score=25.90 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=24.9
Q ss_pred CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeCCh
Q 033605 48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDIDS 81 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~s~ 81 (115)
+..+||=+||| .|.. +..++..+..+++.+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56789999998 4553 4445567777999999764
No 480
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.59 E-value=11 Score=24.10 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCC-ChHHHHHH----hcCCCeEEEEeCCh---hHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGC-GTLGAAAT----LLGADQVIAIDIDS---DSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~-G~~~~~~~----~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
.++++|-.|+++ +.++..++ +.+ .+|+.++.+. +.++...+... +.++.++..|+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G-~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~ 71 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAG-AKLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSD 71 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCH
Confidence 567888888752 44444444 444 4788776442 22333222221 22566777777653
No 481
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.58 E-value=11 Score=23.91 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++++|=.| |+|.++..++ +.+ .+|+.++-++........... .++.++.+|+.+
T Consensus 5 ~~~~vlItG-as~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~ 63 (257)
T PRK07067 5 QGKVALLTG-AASGIGEAVAERYLAEG-ARVVIADIKPARARLAALEIG---PAAIAVSLDVTR 63 (257)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHhC---CceEEEEccCCC
Confidence 456777777 4455554444 343 489999988876655444332 246777777654
No 482
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=81.57 E-value=9.7 Score=23.26 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=33.5
Q ss_pred CeEEEEcCCCChHHHHHHhcC-CCeEEEEeCChhHHHHHHHHhhccCC----ceeEEEccccCCc
Q 033605 50 KVVADFGCGCGTLGAAATLLG-ADQVIAIDIDSDSLELASENAADLEL----DIDFVQCDIRNLE 109 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~~~ 109 (115)
..|+.||||--.....+.... ...++-+|..+ +++.-++.+...+. +.+++.+|+.+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~ 143 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDS 143 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHH
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchh
Confidence 489999999999888887643 44666666654 33333333333311 4678888887643
No 483
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.53 E-value=3.9 Score=28.49 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=18.3
Q ss_pred HHhcCCCeEEEEeCChhHHHHHHH
Q 033605 66 ATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 66 ~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
+++.++ +|+++|+++.-++..+.
T Consensus 19 lA~~GH-eVv~vDid~~KV~~ln~ 41 (414)
T COG1004 19 LAELGH-EVVCVDIDESKVELLNK 41 (414)
T ss_pred HHHcCC-eEEEEeCCHHHHHHHhC
Confidence 445666 99999999998877665
No 484
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.33 E-value=8.2 Score=22.31 Aligned_cols=47 Identities=28% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCC-CChHH-HHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605 45 GDVSNKVVADFGCG-CGTLG-AAATLLGADQVIAIDIDSDSLELASENA 91 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~-~~~~~~~~~~v~~vD~s~~~~~~a~~~~ 91 (115)
...++.++|=+|+| .|... ..++..+..+++.+.-+.+..+...+.+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 44578899999997 33333 3344567778999998877666655555
No 485
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.22 E-value=11 Score=23.52 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
+++++|=.|+ +|.++..++ +.+. +|++++-++...+.........+.++.++.+|+.+
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 65 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD 65 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC
Confidence 3457886665 566665554 3344 78999888776655544444344467777777754
No 486
>PRK06180 short chain dehydrogenase; Provisional
Probab=80.91 E-value=12 Score=24.09 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 49 NKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 49 ~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.+++|=.|++. .++..++ +.+ .+|++++-++..+...... .+.++.++.+|+.+
T Consensus 4 ~~~vlVtGasg-giG~~la~~l~~~G-~~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~d 61 (277)
T PRK06180 4 MKTWLITGVSS-GFGRALAQAALAAG-HRVVGTVRSEAARADFEAL---HPDRALARLLDVTD 61 (277)
T ss_pred CCEEEEecCCC-hHHHHHHHHHHhCc-CEEEEEeCCHHHHHHHHhh---cCCCeeEEEccCCC
Confidence 45677777644 4444433 344 4899999887765443332 12256667777654
No 487
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=80.68 E-value=9.8 Score=25.01 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred CCCCCCeEEEEcC--CCChHHHHHHhcCCCeEEEEeCChhHHHHHHH
Q 033605 45 GDVSNKVVADFGC--GCGTLGAAATLLGADQVIAIDIDSDSLELASE 89 (115)
Q Consensus 45 ~~~~~~~vLDlG~--G~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~ 89 (115)
...++.+||=.|+ |.|..+..+++....++++++-+++..+.+++
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4457788888874 46667777776545589999988887777655
No 488
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.66 E-value=9.7 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeC
Q 033605 48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDI 79 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~ 79 (115)
...+|+=+||| .|.. +..++..+..+++.+|.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56799999998 5554 44455677789988863
No 489
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=80.65 E-value=14 Score=24.46 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCCChHHHHHHh---cCCCeEEEEeCChhHHHHHHHHhhccC--CceeEEEccccCCc
Q 033605 48 SNKVVADFGCGCGTLGAAATL---LGADQVIAIDIDSDSLELASENAADLE--LDIDFVQCDIRNLE 109 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~ 109 (115)
.++++|-.| |+|.++..+++ ....+|+++..++.............+ .+++++.+|+.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 356788777 56666666553 123378777666554333222221112 26788888887643
No 490
>PRK08324 short chain dehydrogenase; Validated
Probab=80.52 E-value=13 Score=27.79 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
.++++|=.|++ |.++..++ +.+ .+|+++|.++.....+....... .++.++.+|+.+
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTD 481 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCC
Confidence 45788877753 33433333 344 48999999988776655543322 256777777654
No 491
>PLN02494 adenosylhomocysteinase
Probab=80.46 E-value=11 Score=27.07 Aligned_cols=51 Identities=25% Similarity=0.160 Sum_probs=31.9
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCC-CChHHHHHHhcCCCeEEEEeCChhHHHHH
Q 033605 37 LYTAENSFGD-VSNKVVADFGCG-CGTLGAAATLLGADQVIAIDIDSDSLELA 87 (115)
Q Consensus 37 ~~~~~~~~~~-~~~~~vLDlG~G-~G~~~~~~~~~~~~~v~~vD~s~~~~~~a 87 (115)
++.+...... ..+++|+=+|+| .|......++....+|+++|.++.....+
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA 293 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA 293 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH
Confidence 3444433332 468899999999 45544444443234899999998654443
No 492
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.05 E-value=12 Score=23.49 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCCh-hHHHHHHHHhhccCCceeEEEccccCC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDS-DSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++++|-.|++ |.++..++ +.+ .+|+++.-+. ...+.........+.++.++.+|+.+.
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~ 68 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDE 68 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 55688888853 33444433 344 4788877653 233333333333333567777777653
No 493
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=80.02 E-value=10 Score=26.15 Aligned_cols=46 Identities=33% Similarity=0.328 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcCC-CChHHHHHHh-cCCCeEEEEeCChhHHHHHHHH
Q 033605 45 GDVSNKVVADFGCG-CGTLGAAATL-LGADQVIAIDIDSDSLELASEN 90 (115)
Q Consensus 45 ~~~~~~~vLDlG~G-~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~ 90 (115)
...++++||=.|+| .|..+..+++ .+...++++|.++..++.+++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~ 229 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF 229 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc
Confidence 44567777767765 4445555665 4554577788988888887763
No 494
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=79.62 E-value=1.7 Score=30.81 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHhcCCCCCCeEEEEcCCCChHHHHHH---hcCCCeEEEEeCChhHHHHHHHHhhc
Q 033605 30 PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGAAAT---LLGADQVIAIDIDSDSLELASENAAD 93 (115)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~---~~~~~~v~~vD~s~~~~~~a~~~~~~ 93 (115)
.....+....+-..-+..+++.++|+|.|.|.-...+. ......++.||.+..|......+...
T Consensus 182 Ya~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~ 248 (491)
T KOG2539|consen 182 YALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD 248 (491)
T ss_pred hHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC
Confidence 34445555555444466688899999999877544433 23345899999999999988887665
No 495
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=79.60 E-value=12 Score=25.41 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=24.8
Q ss_pred CCCeEEEEcCC-CChH-HHHHHhcCCCeEEEEeCC
Q 033605 48 SNKVVADFGCG-CGTL-GAAATLLGADQVIAIDID 80 (115)
Q Consensus 48 ~~~~vLDlG~G-~G~~-~~~~~~~~~~~v~~vD~s 80 (115)
...+||=+||| .|.. +..++..+..+++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999998 4553 444556777899999976
No 496
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.39 E-value=15 Score=24.24 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCCCh-HHHH-HHhcCCCeEEEEeCChhHHHHHHHHh
Q 033605 47 VSNKVVADFGCGCGT-LGAA-ATLLGADQVIAIDIDSDSLELASENA 91 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~-~~~~-~~~~~~~~v~~vD~s~~~~~~a~~~~ 91 (115)
.++.+|+=+|||--. .... ++..+..+++.+|.+++..+...+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l 171 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADEL 171 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHH
Confidence 466789999998544 3333 33566778999999987766555443
No 497
>PRK07825 short chain dehydrogenase; Provisional
Probab=79.32 E-value=14 Score=23.71 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccC
Q 033605 48 SNKVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRN 107 (115)
Q Consensus 48 ~~~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~ 107 (115)
++.++|=.|++. .++..++ +.+ .+|+.++.+++.++....... ++.++.+|+.+
T Consensus 4 ~~~~ilVtGasg-giG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~ 61 (273)
T PRK07825 4 RGKVVAITGGAR-GIGLATARALAALG-ARVAIGDLDEALAKETAAELG----LVVGGPLDVTD 61 (273)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhc----cceEEEccCCC
Confidence 456788777654 4444433 444 478888888776654433322 35666677654
No 498
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=79.08 E-value=3 Score=25.61 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCCCCCeEEEEcCCCChHHHHHHh-cCCCeEEEEeCChhHHHHHHHHhhcc
Q 033605 36 MLYTAENSFGDVSNKVVADFGCGCGTLGAAATL-LGADQVIAIDIDSDSLELASENAADL 94 (115)
Q Consensus 36 ~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~~~~-~~~~~v~~vD~s~~~~~~a~~~~~~~ 94 (115)
+..+++..-. .+.+.+|+|...|.++-..++ ....+++++|+-.+|-...+-+++-.
T Consensus 69 mrhwivnhck--hdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqln 126 (286)
T PF05575_consen 69 MRHWIVNHCK--HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLN 126 (286)
T ss_pred hhHhhhhhcc--CCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeC
Confidence 3344544422 466899999999998776665 35669999999998877766665543
No 499
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=78.99 E-value=15 Score=24.05 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCCCh---HHHHHHhcCCCeEEEEeCChhHHHHHHHHhhccCC---ceeEEEccccCCc
Q 033605 47 VSNKVVADFGCGCGT---LGAAATLLGADQVIAIDIDSDSLELASENAADLEL---DIDFVQCDIRNLE 109 (115)
Q Consensus 47 ~~~~~vLDlG~G~G~---~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~ 109 (115)
..++++|--|.++|. .+..+++.++ +|+.++.+++.++...+.....+. ++..+.+|+.+.+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 73 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEV 73 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHH
Confidence 467888888888776 3455666655 999999999988777766554333 5788888876543
No 500
>PRK07074 short chain dehydrogenase; Provisional
Probab=78.95 E-value=14 Score=23.43 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=31.4
Q ss_pred CeEEEEcCCCChHHHHHH----hcCCCeEEEEeCChhHHHHHHHHhhccCCceeEEEccccCC
Q 033605 50 KVVADFGCGCGTLGAAAT----LLGADQVIAIDIDSDSLELASENAADLELDIDFVQCDIRNL 108 (115)
Q Consensus 50 ~~vLDlG~G~G~~~~~~~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~ 108 (115)
+++|=.|++.| ++..++ +.+ .+|++++-++...+....... +.++.++.+|+.+.
T Consensus 3 k~ilItGat~~-iG~~la~~L~~~g-~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~ 61 (257)
T PRK07074 3 RTALVTGAAGG-IGQALARRFLAAG-DRVLALDIDAAALAAFADALG--DARFVPVACDLTDA 61 (257)
T ss_pred CEEEEECCcch-HHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCH
Confidence 35666665443 444433 344 489999888766554443331 12567777777553
Done!