BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033608
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F5O|A Chain A, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|B Chain B, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|C Chain C, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|D Chain D, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|E Chain E, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|F Chain F, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|G Chain G, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
pdb|3F5O|H Chain H, Crystal Structure Of Hthem2(Undecan-2-One-Coa) Complex
Length = 148
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
FER ++ + + + PG+VIC MKV NA +HGG TATLVD + + A+ GA
Sbjct: 21 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGA 79
Query: 91 PSVGVSVEINVSYLDAA 107
P GVSV++N++Y+ A
Sbjct: 80 P--GVSVDMNITYMSPA 94
>pdb|2H4U|A Chain A, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|B Chain B, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|C Chain C, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
pdb|2H4U|D Chain D, Crystal Structure Of Human Thioesterase Superfamily Member
2 (Casp Target)
Length = 145
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
FER ++ + + + PG+VIC MKV NA +HGG TATLVD + + A+ GA
Sbjct: 26 FER-VLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCTERGA 84
Query: 91 PSVGVSVEINVSYLDAA 107
P GVSV++N++Y+ A
Sbjct: 85 P--GVSVDMNITYMSPA 99
>pdb|2F0X|A Chain A, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|B Chain B, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|C Chain C, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|D Chain D, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|E Chain E, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|F Chain F, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|G Chain G, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
pdb|2F0X|H Chain H, Crystal Structure And Function Of Human Thioesterase
Superfamily Member 2(Them2)
Length = 148
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
FER ++ + + + PG+VIC KV NA +HGG TATLVD + + A+ GA
Sbjct: 21 FER-VLGKITLVSAAPGKVICEXKVEEEHTNAIGTLHGGLTATLVDNISTXALLCTERGA 79
Query: 91 PSVGVSVEINVSYLDAA 107
P GVSV+ N++Y A
Sbjct: 80 P--GVSVDXNITYXSPA 94
>pdb|2CY9|A Chain A, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
pdb|2CY9|B Chain B, Crystal Structure Of Thioesterase Superfamily Member2 From
Mus Musculus
Length = 140
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV--GA 90
F+R +++ + + + P ++IC KV + N +HGG TATLVD + + A+ GA
Sbjct: 21 FDR-VLEKVTLVSAAPEKLICEXKVEEQHTNKLGTLHGGLTATLVDSISTXALXCTERGA 79
Query: 91 PSVGVSVEINVSYLDAA 107
P GVSV+ N++Y A
Sbjct: 80 P--GVSVDXNITYXSPA 94
>pdb|3E1E|A Chain A, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|B Chain B, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|C Chain C, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|D Chain D, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|E Chain E, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|F Chain F, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|G Chain G, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
pdb|3E1E|H Chain H, Crystal Structure Of A Thioesterase Family Protein From
Silicibacter Pomeroyi. Northeast Structural Genomics
Target Sir180a
Length = 141
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 40 GLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGV-SVE 98
G R+D PGRV M L F+H G +T++D A F++ V +VE
Sbjct: 25 GARIDTLLPGRVELCMPYDRALTQQHGFLHAGIVSTVLDSACGYAAFSLMEEEAAVLTVE 84
Query: 99 INVSYLDAAFG 109
V++L+ A G
Sbjct: 85 FKVNFLNPAEG 95
>pdb|4AE8|A Chain A, Crystal Structure Of Human Them4
pdb|4AE8|B Chain B, Crystal Structure Of Human Them4
pdb|4AE8|C Chain C, Crystal Structure Of Human Them4
pdb|4AE8|D Chain D, Crystal Structure Of Human Them4
Length = 211
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 50 RVICSMKVPPRLLNAGNFMHGGATATLVD-LVGSAAIFTVGAPSVGVSVEINVSY 103
R++C + P L F+HGGA AT++D VG A+ G + ++ +N++Y
Sbjct: 104 RMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGG---IVMTANLNINY 155
>pdb|4GAH|A Chain A, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
pdb|4GAH|B Chain B, Human Acyl-Coa Thioesterases 4 In Complex With
Undecan-2-One-Coa Inhibitor
Length = 209
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 50 RVICSMKVPPRLLNAGNFMHGGATATLVD-LVGSAAIFTVGAPSVGVSVEINVSY 103
R++C + P L F+HGGA AT++D VG A+ G + ++ +N++Y
Sbjct: 94 RMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGG---IVMTANLNINY 145
>pdb|3NWZ|A Chain A, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|B Chain B, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|C Chain C, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
pdb|3NWZ|D Chain D, Crystal Structure Of Bh2602 Protein From Bacillus
Halodurans With Coa, Northeast Structural Genomics
Consortium Target Bhr199
Length = 176
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLV-GSAAIFTVGAPSVGVSVEINVSYLD 105
E GR + + P + N N +HGG TATL+D G + V+ E+N+ Y+
Sbjct: 60 EDGRFEVRLPIGPLVNNPLNXVHGGITATLLDTAXGQXVNRQLPDGQSAVTSELNIHYVK 119
Query: 106 AAFG 109
G
Sbjct: 120 PGXG 123
>pdb|1VH5|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VH5|B Chain B, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|B Chain B, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|C Chain C, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|D Chain D, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|E Chain E, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|F Chain F, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|G Chain G, Crystal Structure Of A Putative Thioesterase
pdb|1VI8|H Chain H, Crystal Structure Of A Putative Thioesterase
Length = 148
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 54 SMKVPPRLLNAGNFMHGGATATLVDLVGSAA--IFTVGAPSVGVSVEINVSYLDAA 107
+M V R +HGGA+ L + +GS A + T G V V +EIN +++ +A
Sbjct: 41 TMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSA 95
>pdb|1SBK|A Chain A, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|B Chain B, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|C Chain C, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29.
pdb|1SBK|D Chain D, X-Ray Structure Of Ydii_ecoli Northeast Structural
Genomics Consortium Target Er29
Length = 144
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 67 FMHGGATATLVDLVGSAA--IFTVGAPSVGVSVEINVSYLDAAFGGVKR 113
+HGGA+ L + +GS A + T G V V +EIN +++ +A G R
Sbjct: 52 LLHGGASVVLAESIGSVAGYLCTEGEQKV-VGLEINANHVRSAREGRVR 99
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 53 CSMKVPPRLLNAGNFMHGGATAT 75
C +K P NAGN H G AT
Sbjct: 177 CDLKDSPGCFNAGNMYHHGEGAT 199
>pdb|3KG8|A Chain A, Dehydratase Domain From Curj Module Of Curacin Polyketide
Synthase
pdb|3KG8|B Chain B, Dehydratase Domain From Curj Module Of Curacin Polyketide
Synthase
Length = 308
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 49 GRVICSMKVPPRLLNAGNF-MHGGATATLVD 78
G V+C MKVP +LN + +H TLVD
Sbjct: 193 GEVLCQMKVPKTILNTTKYQLH----PTLVD 219
>pdb|3E8P|A Chain A, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|B Chain B, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|C Chain C, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246.
pdb|3E8P|D Chain D, Crystal Structure Of The Protein Q8e9m7 From Shewanella
Oneidensis Related To Thioesterase Superfamily.
Northeast Structural Genomics Consortium Target Sor246
Length = 164
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 40 GLRVDLSEPGRVICSMKVPPRLLNAGNF----MHGGATATLVDLVGSAAIF 86
GL + + V ++ P L+ GN +HGG TAT++D+VG F
Sbjct: 38 GLDIKRYDIDGVEVAINXKPELI--GNIHQQILHGGVTATVLDVVGGLTAF 86
>pdb|1VH9|A Chain A, Crystal Structure Of A Putative Thioesterase
pdb|1VH9|B Chain B, Crystal Structure Of A Putative Thioesterase
Length = 149
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIF--TVGAPSVGVSVEINVSY 103
M V R +HGGA+A L + +GS A F T V V E+N ++
Sbjct: 42 MPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCV-VGTELNATH 91
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 69 HGGATAT---LVDLVGSAAIFTVGAPSVGVSVEINVSYLDA 106
+GG+ A + V A + +GA VGV V + YLDA
Sbjct: 213 YGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDYLDA 253
>pdb|1ZKI|A Chain A, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
pdb|1ZKI|B Chain B, Structure Of Conserved Protein Pa5202 From Pseudomonas
Aeruginosa
Length = 133
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 49 GRVICSMKVP--PRLLNAGNFMHGGATATLVDLV-GSAAIFTVGAPSVGVSVEINVSYLD 105
G + +++P L N G HGGA +L D+ G A + G V++E ++Y+
Sbjct: 28 GDGVAEVRLPXAAHLRNRGGVXHGGALFSLXDVTXGLACSSSHGFDRQSVTLECKINYIR 87
Query: 106 AAFGGVKR 113
A G R
Sbjct: 88 AVADGEVR 95
>pdb|4F7D|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4F7D|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264
pdb|4FK8|A Chain A, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
pdb|4FK8|B Chain B, Crystal Structure Of Ferredoxin-Nadp Reductase From
Burkholderia Thailandensis E264 With Bound Fad
Length = 271
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 29 PTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVD 78
PT E F +G DL G++ + +PP M G+TA L D
Sbjct: 193 PTVTREEFENEGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKD 242
>pdb|3DKZ|A Chain A, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c.
pdb|3DKZ|B Chain B, Crystal Structure Of The Q7w9w5_borpa Protein From
Bordetella Parapertussis. Northeast Structural Genomics
Consortium Target Bpr208c
Length = 142
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 30 TKFFERFI--MQGLRVDLSEPGRVICSMKVPPR--LLNAGNFMHGGATATLVDLVGSAAI 85
T FF I Q L V G ++P R L+N+ +HGG +++D
Sbjct: 6 TDFFGLTIPFXQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLXSVLD------- 58
Query: 86 FTVGAPSVGVSVEINVSYLD 105
FT+GA G + E+ V+ +D
Sbjct: 59 FTLGAAIRGDTPEVGVATID 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,902,035
Number of Sequences: 62578
Number of extensions: 97640
Number of successful extensions: 214
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 21
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)