Query 033608
Match_columns 115
No_of_seqs 112 out of 1033
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10254 thioesterase; Provisi 99.9 2.3E-21 5.1E-26 133.0 10.7 83 30-114 17-100 (137)
2 PRK10293 acyl-CoA esterase; Pr 99.9 2.1E-21 4.5E-26 133.0 9.8 80 33-114 20-100 (136)
3 PLN02322 acyl-CoA thioesterase 99.8 3.1E-20 6.8E-25 129.6 10.5 82 30-114 10-92 (154)
4 PRK11688 hypothetical protein; 99.8 2.1E-19 4.6E-24 125.0 10.0 99 1-114 4-118 (154)
5 TIGR00369 unchar_dom_1 unchara 99.8 2.1E-18 4.5E-23 114.4 9.3 77 38-114 5-82 (117)
6 KOG3328 HGG motif-containing t 99.8 1.5E-18 3.3E-23 119.3 7.4 96 3-113 6-101 (148)
7 COG2050 PaaI HGG motif-contain 99.8 2.6E-18 5.7E-23 117.7 8.6 77 38-114 23-100 (141)
8 TIGR02286 PaaD phenylacetic ac 99.8 5.8E-18 1.3E-22 112.0 9.0 75 38-114 3-78 (114)
9 TIGR02447 yiiD_Cterm thioester 99.7 1.1E-15 2.4E-20 104.7 10.6 72 38-110 11-86 (138)
10 cd03443 PaaI_thioesterase PaaI 99.6 5.1E-14 1.1E-18 91.4 9.6 76 39-114 2-78 (113)
11 PF14539 DUF4442: Domain of un 99.5 6E-14 1.3E-18 95.4 9.0 73 38-110 18-91 (132)
12 PRK10694 acyl-CoA esterase; Pr 99.2 9.9E-11 2.1E-15 79.9 7.8 67 46-113 7-74 (133)
13 cd03442 BFIT_BACH Brown fat-in 99.1 6.4E-10 1.4E-14 72.9 8.5 66 46-112 3-69 (123)
14 KOG4781 Uncharacterized conser 99.1 5.4E-10 1.2E-14 82.0 7.2 69 46-114 122-190 (237)
15 COG1607 Acyl-CoA hydrolase [Li 99.0 1.4E-09 3.1E-14 76.1 8.2 66 47-113 10-76 (157)
16 PF03061 4HBT: Thioesterase su 98.9 6.1E-09 1.3E-13 63.2 6.1 47 65-111 1-48 (79)
17 PRK04424 fatty acid biosynthes 98.7 2.5E-07 5.3E-12 66.3 9.2 67 42-112 76-144 (185)
18 PLN02647 acyl-CoA thioesterase 98.6 2.6E-07 5.7E-12 74.0 8.0 67 46-113 286-353 (437)
19 cd00556 Thioesterase_II Thioes 98.5 2.5E-07 5.5E-12 58.5 5.0 47 65-111 14-60 (99)
20 PF09500 YiiD_Cterm: Putative 98.5 1.4E-06 2.9E-11 60.4 8.9 73 38-111 17-93 (144)
21 PLN02647 acyl-CoA thioesterase 98.3 3.1E-06 6.6E-11 67.9 8.3 72 42-113 79-164 (437)
22 cd00586 4HBT 4-hydroxybenzoyl- 97.9 5.2E-05 1.1E-09 47.4 6.7 60 52-111 2-69 (110)
23 cd03440 hot_dog The hotdog fol 97.8 0.00027 5.9E-09 41.4 7.8 60 53-112 3-63 (100)
24 KOG2763 Acyl-CoA thioesterase 97.6 0.00021 4.5E-09 56.0 6.9 67 46-113 195-262 (357)
25 TIGR02799 thio_ybgC tol-pal sy 96.2 0.025 5.3E-07 36.9 6.3 60 53-112 3-71 (126)
26 PF13622 4HBT_3: Thioesterase- 96.0 0.017 3.6E-07 42.4 5.1 46 65-114 9-54 (255)
27 TIGR00051 acyl-CoA thioester h 95.3 0.077 1.7E-06 33.8 5.9 58 55-112 2-67 (117)
28 cd03445 Thioesterase_II_repeat 94.8 0.09 1.9E-06 33.5 4.9 45 64-113 14-59 (94)
29 PRK10800 acyl-CoA thioesterase 94.5 0.43 9.2E-06 31.4 7.8 61 52-112 4-72 (130)
30 COG0824 FcbC Predicted thioest 93.7 0.53 1.1E-05 31.9 7.2 63 50-112 5-75 (137)
31 cd03449 R_hydratase (R)-hydrat 91.9 0.7 1.5E-05 29.8 5.7 44 64-111 44-87 (128)
32 COG4109 Predicted transcriptio 90.9 1.2 2.6E-05 35.5 6.8 76 33-112 318-393 (432)
33 PRK07531 bifunctional 3-hydrox 89.6 1.9 4.2E-05 35.1 7.4 63 49-111 344-413 (495)
34 cd03441 R_hydratase_like (R)-h 88.9 1.1 2.4E-05 28.8 4.6 46 64-112 41-86 (127)
35 PF13279 4HBT_2: Thioesterase- 88.6 3.1 6.8E-05 26.6 6.6 54 58-112 2-62 (121)
36 PRK00006 fabZ (3R)-hydroxymyri 83.1 11 0.00025 25.1 10.1 70 43-112 28-107 (147)
37 PF01575 MaoC_dehydratas: MaoC 82.7 6.5 0.00014 25.6 5.9 46 64-112 49-94 (122)
38 cd01288 FabZ FabZ is a 17kD be 81.7 11 0.00025 24.2 9.4 70 43-112 13-93 (131)
39 PLN02868 acyl-CoA thioesterase 75.1 7 0.00015 31.1 4.9 62 41-110 136-197 (413)
40 cd03447 FAS_MaoC FAS_MaoC, the 71.9 16 0.00035 24.1 5.4 44 65-111 42-85 (126)
41 TIGR00189 tesB acyl-CoA thioes 70.0 8 0.00017 28.6 4.0 40 66-110 21-60 (271)
42 cd03455 SAV4209 SAV4209 is a S 69.8 15 0.00032 23.8 4.8 42 65-111 43-84 (123)
43 cd03453 SAV4209_like SAV4209_l 69.7 18 0.00039 23.6 5.3 43 64-111 43-85 (127)
44 cd00493 FabA_FabZ FabA/Z, beta 61.5 39 0.00086 21.5 8.9 70 42-111 11-93 (131)
45 cd03448 HDE_HSD HDE_HSD The R 60.2 37 0.00081 22.3 5.4 45 64-111 43-87 (122)
46 COG5496 Predicted thioesterase 57.4 59 0.0013 22.2 7.9 49 64-112 27-76 (130)
47 PRK10526 acyl-CoA thioesterase 44.9 54 0.0012 24.8 4.8 61 41-111 12-72 (286)
48 cd03446 MaoC_like MoaC_like 44.7 26 0.00057 22.9 2.7 45 65-112 50-96 (140)
49 PRK13188 bifunctional UDP-3-O- 44.1 1.8E+02 0.004 24.0 9.6 70 43-112 342-421 (464)
50 cd03451 FkbR2 FkbR2 is a Strep 43.8 32 0.0007 22.6 3.1 45 64-112 52-97 (146)
51 KOG3016 Acyl-CoA thioesterase 42.1 47 0.001 25.7 4.0 66 41-112 14-79 (294)
52 cd03450 NodN NodN (nodulation 42.1 33 0.00072 23.4 3.0 46 65-112 56-103 (149)
53 COG5139 Uncharacterized conser 40.5 29 0.00062 27.2 2.6 54 3-61 211-267 (397)
54 PRK08190 bifunctional enoyl-Co 38.8 1E+02 0.0022 25.2 5.7 44 65-112 58-101 (466)
55 cd03452 MaoC_C MaoC_C The C-t 37.9 89 0.0019 20.7 4.6 44 65-112 50-94 (142)
56 PRK13693 (3R)-hydroxyacyl-ACP 36.9 1.1E+02 0.0023 20.6 4.9 41 64-109 53-93 (142)
57 PLN02864 enoyl-CoA hydratase 34.8 1.2E+02 0.0027 23.3 5.4 46 65-113 227-272 (310)
58 PRK04156 gltX glutamyl-tRNA sy 33.7 1.7E+02 0.0037 24.8 6.3 31 46-81 97-128 (567)
59 cd03444 Thioesterase_II_repeat 32.8 1.3E+02 0.0028 19.0 5.5 46 65-110 14-64 (104)
60 PF07862 Nif11: Nitrogen fixat 32.8 11 0.00025 20.6 -0.5 14 1-14 1-14 (49)
61 COG3510 CmcI Cephalosporin hyd 31.6 17 0.00037 26.9 0.2 49 55-108 66-114 (237)
62 PF10886 DUF2685: Protein of u 30.2 56 0.0012 18.9 2.1 30 51-80 5-36 (54)
63 KOG2763 Acyl-CoA thioesterase 29.5 1.5E+02 0.0032 23.7 5.1 55 57-111 15-79 (357)
64 TIGR00189 tesB acyl-CoA thioes 26.0 2.2E+02 0.0047 20.9 5.3 46 66-111 181-231 (271)
65 COG5549 Predicted Zn-dependent 25.2 3E+02 0.0064 20.6 6.3 93 2-110 50-144 (236)
66 PHA00198 nonstructural protein 24.0 42 0.00091 21.0 0.9 26 4-31 26-51 (86)
67 PF03818 MadM: Malonate/sodium 23.5 1.2E+02 0.0025 18.0 2.7 19 65-83 36-54 (60)
68 cd03454 YdeM YdeM is a Bacillu 22.5 1.6E+02 0.0036 19.1 3.7 43 66-111 49-93 (140)
69 PF04989 CmcI: Cephalosporin h 21.1 47 0.001 24.4 0.8 43 57-104 31-73 (206)
No 1
>PRK10254 thioesterase; Provisional
Probab=99.86 E-value=2.3e-21 Score=133.01 Aligned_cols=83 Identities=23% Similarity=0.220 Sum_probs=73.5
Q ss_pred hhhhhhhhhcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCcc
Q 033608 30 TKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAF 108 (115)
Q Consensus 30 ~~~~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~-~~~~~vT~~l~i~flrp~~ 108 (115)
...|.. .+|+++.++++|+++++++++++++|+.|++|||++++|+|+++++|+.... ++...+|+++++||+||++
T Consensus 17 ~~~~~~--~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~ 94 (137)
T PRK10254 17 DNTMVA--HLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVS 94 (137)
T ss_pred ccchHH--hhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCc
Confidence 334555 4899999999999999999999999999999999999999999999988653 4567899999999999999
Q ss_pred CCeeee
Q 033608 109 GGVKRL 114 (115)
Q Consensus 109 ~g~~~~ 114 (115)
.|.+++
T Consensus 95 ~g~l~a 100 (137)
T PRK10254 95 EGKVRG 100 (137)
T ss_pred CCeEEE
Confidence 998764
No 2
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.86 E-value=2.1e-21 Score=133.05 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=72.1
Q ss_pred hhhhhhcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCccCCe
Q 033608 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 33 ~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~ 111 (115)
|.. ++|+++.++++|+++++++++++++|+.|++|||++++|+|+++++++.... ++...+|+++++||++|++.|.
T Consensus 20 ~~~--~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g~ 97 (136)
T PRK10293 20 MVG--LLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGR 97 (136)
T ss_pred HHH--hcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCce
Confidence 555 4899999999999999999999999999999999999999999999887754 3456799999999999999998
Q ss_pred eee
Q 033608 112 KRL 114 (115)
Q Consensus 112 ~~~ 114 (115)
+++
T Consensus 98 l~a 100 (136)
T PRK10293 98 VRG 100 (136)
T ss_pred EEE
Confidence 765
No 3
>PLN02322 acyl-CoA thioesterase
Probab=99.84 E-value=3.1e-20 Score=129.65 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=70.9
Q ss_pred hhhhhhhhhcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccC
Q 033608 30 TKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFG 109 (115)
Q Consensus 30 ~~~~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~ 109 (115)
.||... +|+++.++++|+++++++++++++|+.|++|||++++|+|+++++++.........+|+++++||+||++.
T Consensus 10 dpf~~~---LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~ 86 (154)
T PLN02322 10 DPPLHM---LGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADL 86 (154)
T ss_pred chHHHH---CCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCC
Confidence 345553 89999999999999999999999999999999999999999999887654433467999999999999998
Q ss_pred Ce-eee
Q 033608 110 GV-KRL 114 (115)
Q Consensus 110 g~-~~~ 114 (115)
|+ +++
T Consensus 87 G~~L~A 92 (154)
T PLN02322 87 GDLVFA 92 (154)
T ss_pred CCEEEE
Confidence 84 554
No 4
>PRK11688 hypothetical protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=124.97 Aligned_cols=99 Identities=24% Similarity=0.308 Sum_probs=79.6
Q ss_pred CCHHHHHHHHhcCCCCCCCCCCcccccCChhhhhhhhhcCeEEEEecCCEEEEEEEcCCCCcC--CCCCCcHHHHHHHHH
Q 033608 1 MELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLN--AGNFMHGGATATLVD 78 (115)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N--~~G~vHGG~iatl~D 78 (115)
|++++.++.+++.-. + ..+ |.+ ++|++++++++|.++++++++++++| +.|++|||++++|+|
T Consensus 4 ~~~~~~~~~~~~~~~-~-----------~~p-f~~--~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D 68 (154)
T PRK11688 4 LTQEEALKLVGEIFV-Y-----------HMP-FNR--LLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLD 68 (154)
T ss_pred cCHHHHHHHHHHHHH-h-----------cCC-HHH--HhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHH
Confidence 678888888887541 0 123 455 48999999999999999999999995 689999999999999
Q ss_pred HHHHHHHHHhCC--------------CCeeeeEEEEEEeecCccCCeeee
Q 033608 79 LVGSAAIFTVGA--------------PSVGVSVEINVSYLDAAFGGVKRL 114 (115)
Q Consensus 79 ~~~g~a~~~~~~--------------~~~~vT~~l~i~flrp~~~g~~~~ 114 (115)
+++++++++... ....+|++++++|+||++.+.+++
T Consensus 69 ~a~g~a~~~~~~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~g~~l~a 118 (154)
T PRK11688 69 VAGGLVCVGGILARHEDISEEELRQRLSRLGTIDLRVDYLRPGRGERFTA 118 (154)
T ss_pred HHHHHHHHhhcccccccccccccccccccceEEEEEEEeeccCCCCeEEE
Confidence 999999876421 013589999999999998766654
No 5
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.78 E-value=2.1e-18 Score=114.36 Aligned_cols=77 Identities=30% Similarity=0.380 Sum_probs=68.7
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCccCCeeee
Q 033608 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVKRL 114 (115)
Q Consensus 38 ~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~~~ 114 (115)
++|+++.++++|++++++++.|+++|+.|++|||++++++|.++++++.... ++...+|++++++|+||++.|.+++
T Consensus 5 ~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g~l~a 82 (117)
T TIGR00369 5 FLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREGKVRA 82 (117)
T ss_pred ccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCCEEEE
Confidence 4899999999999999999999999999999999999999999988776543 3456799999999999999996554
No 6
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.76 E-value=1.5e-18 Score=119.33 Aligned_cols=96 Identities=45% Similarity=0.588 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCcccccCChhhhhhhhhcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHH
Q 033608 3 LESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGS 82 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g 82 (115)
.|.+++-++.... ..+|++.. .++++..+.+|+++++|+++++++|+.+++|||++|+|+|.+++
T Consensus 6 ~~~~~~~~~~~~~--------------~~~Fd~~~-~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s 70 (148)
T KOG3328|consen 6 DEFAKEPLEILGK--------------SFGFDRVL-NNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITS 70 (148)
T ss_pred hhhhhhHHHHhcc--------------ccchhhhc-CceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhh
Confidence 4566777776662 23377654 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeeeeEEEEEEeecCccCCeee
Q 033608 83 AAIFTVGAPSVGVSVEINVSYLDAAFGGVKR 113 (115)
Q Consensus 83 ~a~~~~~~~~~~vT~~l~i~flrp~~~g~~~ 113 (115)
+|+....+....+++||+++||+|++.|+.+
T Consensus 71 ~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l 101 (148)
T KOG3328|consen 71 AALLMTSGFKPGVSVDLSVSYLSSAKLGEEL 101 (148)
T ss_pred HHHHhccCCCCceEEEEEhhhccccCCCCeE
Confidence 9877766566889999999999999988854
No 7
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=2.6e-18 Score=117.67 Aligned_cols=77 Identities=27% Similarity=0.470 Sum_probs=70.8
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEEeecCccCCeeee
Q 033608 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGVKRL 114 (115)
Q Consensus 38 ~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g~~~~ 114 (115)
.+|++++.+++|++++++++.+++.|+.|++|||++++++|+++++|+..... ....+|+++++||+||++.|++++
T Consensus 23 ~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~~~g~v~a 100 (141)
T COG2050 23 TLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPVKEGDVTA 100 (141)
T ss_pred hcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCCCCCeEEE
Confidence 48999999999999999999999999999999999999999999999998764 345589999999999999998664
No 8
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.76 E-value=5.8e-18 Score=111.95 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=66.3
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe-eee
Q 033608 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV-KRL 114 (115)
Q Consensus 38 ~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~-~~~ 114 (115)
.+|+++.++++|++.++++++++++|+.|++|||++++++|.++++++.... ...+|++++++|+||++.|+ +++
T Consensus 3 ~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~--~~~~t~~~~i~f~rp~~~G~~l~~ 78 (114)
T TIGR02286 3 ALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYG--DAAVAAQCTIDFLRPGRAGERLEA 78 (114)
T ss_pred ccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCC--CceEEEEEEEEEecCCCCCCEEEE
Confidence 4899999999999999999999999999999999999999999887764433 24689999999999999885 543
No 9
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.66 E-value=1.1e-15 Score=104.71 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=61.8
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHH----hCCCCeeeeEEEEEEeecCccCC
Q 033608 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFT----VGAPSVGVSVEINVSYLDAAFGG 110 (115)
Q Consensus 38 ~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~----~~~~~~~vT~~l~i~flrp~~~g 110 (115)
.+|+++.++++|++++++|+.++ +|+.|++|||+++||+|.+++.++.. ...+...+|++++++|++|++.+
T Consensus 11 ~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl~P~~~~ 86 (138)
T TIGR02447 11 AMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYLAPVTGD 86 (138)
T ss_pred HcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEcCCcCCC
Confidence 48999999999999999999996 89999999999999999876654432 12234679999999999999876
No 10
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.55 E-value=5.1e-14 Score=91.41 Aligned_cols=76 Identities=42% Similarity=0.644 Sum_probs=68.0
Q ss_pred cCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCccCCeeee
Q 033608 39 QGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVKRL 114 (115)
Q Consensus 39 ~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~~~ 114 (115)
+|+++.+.+++.+++++++++.++|..|.+|||++++++|.+++..+.... ++...++.+++++|++|++.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~~~v~~ 78 (113)
T cd03443 2 LGIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARGGDLTA 78 (113)
T ss_pred CcEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCCCeEEE
Confidence 588899999999999999999999999999999999999999998887764 3456799999999999999866654
No 11
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.53 E-value=6e-14 Score=95.44 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=56.8
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEEeecCccCC
Q 033608 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGG 110 (115)
Q Consensus 38 ~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g 110 (115)
..|++++++++++++++++.++.+.|+.|++|||++++++|.++++++....+ +...+..+++++|++|++.+
T Consensus 18 ~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~g~ 91 (132)
T PF14539_consen 18 TAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPARGD 91 (132)
T ss_dssp CCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---S-
T ss_pred cceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccCCc
Confidence 48999999999999999999999999999999999999999999988887654 44557999999999998765
No 12
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.19 E-value=9.9e-11 Score=79.92 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=58.9
Q ss_pred ecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCccCCeee
Q 033608 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKR 113 (115)
Q Consensus 46 ~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~~ 113 (115)
+.++...+...+.|+++|++|.+|||.+++++|.++++++..... ..++|+.+ .++|++|++.|+++
T Consensus 7 ~~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~-~~~vtv~vd~i~F~~Pv~~Gd~l 74 (133)
T PRK10694 7 VPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAH-GRVVTVRVEGMTFLRPVAVGDVV 74 (133)
T ss_pred CCCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEECceEECCCcccCcEE
Confidence 346778888999999999999999999999999999998876663 46899999 78999999999865
No 13
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.11 E-value=6.4e-10 Score=72.85 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=56.1
Q ss_pred ecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCccCCee
Q 033608 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVK 112 (115)
Q Consensus 46 ~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~ 112 (115)
.+++.+++.+++.+.++|+.|.+|||.+++++|.+++.++..... ...++..+ +++|++|++.|+.
T Consensus 3 ~~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~-~~~~~~~~~~~~f~~p~~~gd~ 69 (123)
T cd03442 3 MEDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAG-GRVVTASVDRIDFLKPVRVGDV 69 (123)
T ss_pred CCccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhC-CcEEEEEECceEEcCccccCcE
Confidence 357889999999999999999999999999999999887665442 24567778 7999999998863
No 14
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=5.4e-10 Score=82.02 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=63.1
Q ss_pred ecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCeeee
Q 033608 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKRL 114 (115)
Q Consensus 46 ~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~~~ 114 (115)
...++.++-+.+.++.+++.|.+|||+|||++|.+.+++++...+...++|.+++++|.+|++...+++
T Consensus 122 ~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~v 190 (237)
T KOG4781|consen 122 PSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVV 190 (237)
T ss_pred cCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEE
Confidence 355789999999999999999999999999999999999998887778899999999999999988664
No 15
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.04 E-value=1.4e-09 Score=76.11 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=59.4
Q ss_pred cCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCccCCeee
Q 033608 47 EPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKR 113 (115)
Q Consensus 47 ~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~~ 113 (115)
.++...++..+-|...|++|.+|||.+.+++|.++++++..... ..+||+++ +++|++|++.|+++
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~-~~vVTasvd~v~F~~Pv~vGd~v 76 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAG-GRVVTASVDSVDFKKPVRVGDIV 76 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhC-CeEEEEEeceEEEccccccCcEE
Confidence 46777788889999999999999999999999999999998774 48899999 99999999999865
No 16
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.89 E-value=6.1e-09 Score=63.25 Aligned_cols=47 Identities=30% Similarity=0.432 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCC-CeeeeEEEEEEeecCccCCe
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAP-SVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~-~~~vT~~l~i~flrp~~~g~ 111 (115)
+|++|||.+++++|.++..++...... ...++++++++|++|++.|+
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd 48 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGD 48 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTS
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCe
Confidence 589999999999999999999987643 56799999999999999884
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.66 E-value=2.5e-07 Score=66.34 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=54.7
Q ss_pred EEEEecCC-EEEEEEEcCCCCc-CCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCee
Q 033608 42 RVDLSEPG-RVICSMKVPPRLL-NAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 42 ~i~~~~~g-~v~~~l~v~~~~~-N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
++.++++| +++..+.++.++. |..+++|||++++++|.++.++ . ++...++...+++|++|+..|+.
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~-~~~~~~~~i~~irF~kPV~pGD~ 144 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---I-DAELALTGVANIRFKRPVKLGER 144 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---c-CCcEEEEEeeeEEEccCCCCCCE
Confidence 56778888 6999999999999 9999999999999999864332 1 23356788889999999998863
No 18
>PLN02647 acyl-CoA thioesterase
Probab=98.57 E-value=2.6e-07 Score=73.99 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=59.0
Q ss_pred ecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCccCCeee
Q 033608 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKR 113 (115)
Q Consensus 46 ~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~~ 113 (115)
..+.++.....+.|.+.|.+|.+|||.++..+|.+++++|..... ..++|+.+ .++|++|++.|+++
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~-~~~vt~svd~v~F~~PV~vGdil 353 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAG-LRPYFLEVDHVDFLRPVDVGDFL 353 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcC-CceEEEEecceEecCccccCcEE
Confidence 355678888899999999999999999999999999988887763 46889988 99999999999865
No 19
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.50 E-value=2.5e-07 Score=58.48 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=40.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
.+.+|||++++++|.+++.++....+....+|++++++|++|++.++
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~ 60 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADE 60 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCc
Confidence 79999999999999999988776543345689999999999999864
No 20
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.49 E-value=1.4e-06 Score=60.40 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=49.7
Q ss_pred hcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHh----CCCCeeeeEEEEEEeecCccCCe
Q 033608 38 MQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTV----GAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 38 ~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~----~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
.+|+++.+.++++++++.|..|+ .|..|++.||-+++++=.++...+... +.....|-.+-+++|++|+..+.
T Consensus 17 ~Mgi~v~~~~~~~l~~~APL~pN-~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~~d~ 93 (144)
T PF09500_consen 17 AMGIKVTSYTGQRLELSAPLAPN-INHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVTGDF 93 (144)
T ss_dssp HTT-EEEEEETTEEEEE--SGGG-B-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S---S--
T ss_pred hcCcEEEEEcCCEEEEeccCCCC-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCCCCc
Confidence 58999999999999999999995 999999999999999976655443322 22356789999999999998764
No 21
>PLN02647 acyl-CoA thioesterase
Probab=98.32 E-value=3.1e-06 Score=67.91 Aligned_cols=72 Identities=11% Similarity=0.005 Sum_probs=59.1
Q ss_pred EEEEecCCEEEEEEEcCCCC------cCCCCCCcHHHHHHHHHHHHHHHHHHhCCC-------CeeeeEEE-EEEeecCc
Q 033608 42 RVDLSEPGRVICSMKVPPRL------LNAGNFMHGGATATLVDLVGSAAIFTVGAP-------SVGVSVEI-NVSYLDAA 107 (115)
Q Consensus 42 ~i~~~~~g~v~~~l~v~~~~------~N~~G~vHGG~iatl~D~~~g~a~~~~~~~-------~~~vT~~l-~i~flrp~ 107 (115)
......+.++.+..++.++. .|+.|.+|||-|...+|.+++++|..+... ..+||+++ +|+|++|+
T Consensus 79 ~~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi 158 (437)
T PLN02647 79 LTKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPI 158 (437)
T ss_pred cccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCC
Confidence 33455677899999665555 999999999999999999999999987632 15799999 99999999
Q ss_pred cCCeee
Q 033608 108 FGGVKR 113 (115)
Q Consensus 108 ~~g~~~ 113 (115)
+.|+++
T Consensus 159 ~~g~~v 164 (437)
T PLN02647 159 RVDVDL 164 (437)
T ss_pred cCCcEE
Confidence 988754
No 22
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=97.94 E-value=5.2e-05 Score=47.41 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCccCCe
Q 033608 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 52 ~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~ 111 (115)
..++++.+..+|..|.+|+|.+.+++|.+....+...+ .+...++.+.+++|++|++.|+
T Consensus 2 ~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 69 (110)
T cd00586 2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGD 69 (110)
T ss_pred cEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCC
Confidence 35688899999999999999999999999887666542 2335688999999999999886
No 23
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.79 E-value=0.00027 Score=41.41 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=49.8
Q ss_pred EEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC-CCCeeeeEEEEEEeecCccCCee
Q 033608 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-APSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 53 ~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~-~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
..+++.+...+..+.+|||.+..++|.+....+.... .....++.+++++|.+|++.|+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 63 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDT 63 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCE
Confidence 4677888888999999999999999999888776643 23456899999999999998663
No 24
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.63 E-value=0.00021 Score=56.03 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=56.4
Q ss_pred ecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEE-EEEeecCccCCeee
Q 033608 46 SEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEI-NVSYLDAAFGGVKR 113 (115)
Q Consensus 46 ~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l-~i~flrp~~~g~~~ 113 (115)
..+..+....-+.|.+.|.+|.++||+++-.++.++...|...... ...+.++ .|+|.+|+..|.++
T Consensus 195 m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~-~p~~rsVD~i~F~~pVdvG~~L 262 (357)
T KOG2763|consen 195 MKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKG-RPATRSVDDIEFQKPVDVGCVL 262 (357)
T ss_pred eeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCC-CceEEEechhhccCcceeeeEE
Confidence 4567788888899999999999999999999999999888887643 4455666 89999999998865
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=96.20 E-value=0.025 Score=36.94 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=46.8
Q ss_pred EEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC--------C-CCeeeeEEEEEEeecCccCCee
Q 033608 53 CSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------A-PSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 53 ~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~--------~-~~~~vT~~l~i~flrp~~~g~~ 112 (115)
..+++++..+++.|.+|-+.+..+++.+........+ . +...+.++++++|++|++.|+.
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~ 71 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDL 71 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCE
Confidence 4677888899999999999999999987665444322 1 2334788999999999997774
No 26
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=95.99 E-value=0.017 Score=42.40 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCeeee
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKRL 114 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~~~ 114 (115)
.+.+|||++++++=.++- ...+.......+++++|++|++.|.+.+
T Consensus 9 g~~~~GG~~a~~~~~A~~----~~~~~~~~~~~s~~~~fl~p~~~~~~~~ 54 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAAR----THAPPPGFDPHSLHVYFLRPVPPGPVEY 54 (255)
T ss_dssp TTCE-HHHHHHHHHHHHH----HCHTTTSSEEEEEEEEESS--BSCEEEE
T ss_pred CCcChhHHHHHHHHHHHH----HhccCCCCceEEEEeEeccccccCCEEE
Confidence 678999987765543333 2211223678999999999999987654
No 27
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=95.35 E-value=0.077 Score=33.82 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=44.9
Q ss_pred EEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCccCCee
Q 033608 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 55 l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
++++...+++.|.+|-+.+..+++.+........+ .+...+.++.+++|.+|++.|+.
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~ 67 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDV 67 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCE
Confidence 46777889999999999999999988664443322 12344788999999999997764
No 28
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=94.78 E-value=0.09 Score=33.45 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=32.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccC-Ceee
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFG-GVKR 113 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~-g~~~ 113 (115)
..+.+|||.+++++-.++...+ .+ .....+++..|++|+.. +++.
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~---~~--~~~~~s~~~~Fl~p~~~~~pv~ 59 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV---PD--DRVPHSLHSYFLRPGDPDQPIE 59 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC---CC--CCCeEEEEEEecCCCCCCCCEE
Confidence 5789999999998776655332 21 24577999999999986 4443
No 29
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=94.46 E-value=0.43 Score=31.43 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=48.5
Q ss_pred EEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCccCCee
Q 033608 52 ICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 52 ~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
..+.+++...++..|.||=+.+..+++.+........+ .+...+.++.+++|++|+..|+.
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~ 72 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDM 72 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCE
Confidence 46778888999999999999999999988775544332 12345788999999999997763
No 30
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=93.70 E-value=0.53 Score=31.85 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=51.1
Q ss_pred EEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC--------CCCeeeeEEEEEEeecCccCCee
Q 033608 50 RVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG--------APSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 50 ~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~--------~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
.....+++....+...|.||=+.+..+++.+-.......+ .+...++++++++|++|++.|+.
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~ 75 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDV 75 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCE
Confidence 4567788888999999999999999999999776655532 11346899999999999998774
No 31
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=91.90 E-value=0.7 Score=29.85 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
+.-++||..++++++.+++. ..++...+..+.+++|++|+..|+
T Consensus 44 ~~~i~~g~~~~~~~~~~~~~----~~~g~~~~~~~~~~~f~~Pv~~gd 87 (128)
T cd03449 44 GGRIAHGMLTASLISAVLGT----LLPGPGTIYLSQSLRFLRPVFIGD 87 (128)
T ss_pred CCceecHHHHHHHHHHHHhc----cCCCceEEEEEEEEEECCCccCCC
Confidence 45699999999987654322 122234567788999999999775
No 32
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=90.85 E-value=1.2 Score=35.51 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=55.5
Q ss_pred hhhhhhcCeEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCee
Q 033608 33 FERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 33 ~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
|+.....++.... ++..++ ..+.|.+.|+.|++.=|+++.++-.+.-....... ....+-=++++-|++|+..+..
T Consensus 318 ~~d~I~~~l~e~~-~~~~~t--~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~-~~niiIE~i~iyflk~vqid~~ 393 (432)
T COG4109 318 ISDQIANNLSEKG-DEYGVT--VEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKK-KRNIIIENITIYFLKPVQIDSV 393 (432)
T ss_pred HHHHHHhhhhhhc-cccceE--EEechhhccccccchHHHHHHHHHHHHHHHHHHhc-CCceEEEeeeeeeecceecccE
Confidence 5555555655433 332233 88999999999999999999999888877666544 2244566889999999997763
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.64 E-value=1.9 Score=35.14 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=49.8
Q ss_pred CEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhC-------CCCeeeeEEEEEEeecCccCCe
Q 033608 49 GRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVG-------APSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 49 g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~-------~~~~~vT~~l~i~flrp~~~g~ 111 (115)
-..+.+++|.+.+++..|.|+=+.+..++|.+..-.....+ .+...+.++.+++|++|++-|+
T Consensus 344 ~~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD 413 (495)
T PRK07531 344 PLRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQ 413 (495)
T ss_pred ceEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCC
Confidence 34577999999999999999999999999988664443332 1234478999999999999776
No 34
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=88.89 E-value=1.1 Score=28.77 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=33.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCee
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
+.-++||..+++++..+..... ...........+++|.+|+..|+.
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~~Pv~~Gd~ 86 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWL---PGTDGANLGSQSVRFLAPVFPGDT 86 (127)
T ss_pred CCceechHHHHHHHHhhhhhhc---cCcccceeEEeEEEEeCCcCCCCE
Confidence 5678999999999877654321 111245677889999999998863
No 35
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=88.63 E-value=3.1 Score=26.59 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=34.9
Q ss_pred CCCCcCCCCCCcHHHHHHHHHHHHHHHHHHh------C-CCCeeeeEEEEEEeecCccCCee
Q 033608 58 PPRLLNAGNFMHGGATATLVDLVGSAAIFTV------G-APSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 58 ~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~------~-~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
++..++ .|.+|=+.+..++|.+-....... . .+...+.++.+++|++|++-++.
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~ 62 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDR 62 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCE
Confidence 455578 999999999999998755433211 1 13356899999999999997763
No 36
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=83.13 E-value=11 Score=25.15 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=41.6
Q ss_pred EEEecC-CEEEEEEEcCCCC--cC----CCCCCcHHHHHHHHHHHHHHHHHHhC--CCCeeeeEEE-EEEeecCccCCee
Q 033608 43 VDLSEP-GRVICSMKVPPRL--LN----AGNFMHGGATATLVDLVGSAAIFTVG--APSVGVSVEI-NVSYLDAAFGGVK 112 (115)
Q Consensus 43 i~~~~~-g~v~~~l~v~~~~--~N----~~G~vHGG~iatl~D~~~g~a~~~~~--~~~~~vT~~l-~i~flrp~~~g~~ 112 (115)
+.+.++ ++++....+++++ .. ...+++|=.+.=++-.++++.+.... .........+ +++|++|++.|+.
T Consensus 28 i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~ 107 (147)
T PRK00006 28 VLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQ 107 (147)
T ss_pred EEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCE
Confidence 445554 6788888877764 22 25568886665555555554333221 1223333333 8999999998863
No 37
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=82.72 E-value=6.5 Score=25.55 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCee
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
+.-++||-..++++-.... ....+........++++|++|+..|+-
T Consensus 49 ~~~ivhG~~~~a~~~~~~~---~~~~~~~~~~~~~~~~rF~~PV~~gdt 94 (122)
T PF01575_consen 49 GGPIVHGMLTLALASGLLG---DWLGPNPPARLGRFNVRFRAPVFPGDT 94 (122)
T ss_dssp SSSB-BHHHHHHHHHHHHH---HHHSTTECEEEEEEEEEESS--BTTEE
T ss_pred CCEEEccHHHHHHHHHHHH---HhccCccceEEEEEEEEEeccccCCCE
Confidence 4678999999887753332 223322245778899999999998873
No 38
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=81.67 E-value=11 Score=24.18 Aligned_cols=70 Identities=9% Similarity=-0.052 Sum_probs=44.8
Q ss_pred EEEec-CCEEEEEEEcCCCC--c-CC---CCCCcHHHHHHHHHHHHHHHHHHhC---CCCeeeeE-EEEEEeecCccCCe
Q 033608 43 VDLSE-PGRVICSMKVPPRL--L-NA---GNFMHGGATATLVDLVGSAAIFTVG---APSVGVSV-EINVSYLDAAFGGV 111 (115)
Q Consensus 43 i~~~~-~g~v~~~l~v~~~~--~-N~---~G~vHGG~iatl~D~~~g~a~~~~~---~~~~~vT~-~l~i~flrp~~~g~ 111 (115)
+.+++ ++.++.+..++++. . .+ ...++|=++.-++..++++...... .....+.. --++.|.+|++.|+
T Consensus 13 i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd 92 (131)
T cd01288 13 VLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGD 92 (131)
T ss_pred EEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCC
Confidence 44556 46788888877764 2 22 3788887777777777666543321 22233333 35999999999887
Q ss_pred e
Q 033608 112 K 112 (115)
Q Consensus 112 ~ 112 (115)
.
T Consensus 93 ~ 93 (131)
T cd01288 93 Q 93 (131)
T ss_pred E
Confidence 4
No 39
>PLN02868 acyl-CoA thioesterase family protein
Probab=75.10 E-value=7 Score=31.05 Aligned_cols=62 Identities=15% Similarity=-0.023 Sum_probs=37.1
Q ss_pred eEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCC
Q 033608 41 LRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (115)
Q Consensus 41 i~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g 110 (115)
+.++.++++.-+.+.+... ...+.++||.+++.+=. +|.....+ ...-.++++.|++|+..+
T Consensus 136 ~~l~~~~~~~f~~~~~~~~---~~~~~~fGG~~~aqal~---Aa~~~~~~--~~~~~s~~~~Fl~~~~~~ 197 (413)
T PLN02868 136 LHLEPLEVDIFRGITLPDA---PTFGKVFGGQLVGQALA---AASKTVDP--LKLVHSLHAYFLLVGDIN 197 (413)
T ss_pred cCcEeccCCeEECCcCCCC---cccccccchHHHHHHHH---HHHccCCC--CCCceEeeeeecCCCCCC
Confidence 3455666766555544222 23578999999986322 22222332 234568899999988753
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=71.85 E-value=16 Score=24.14 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
.-++||-..++++-.+.+- .............+++|++|+..|+
T Consensus 42 ~~iahG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~rf~~PV~~gd 85 (126)
T cd03447 42 GTITHGMYTSAAVRALVET---WAADNDRSRVRSFTASFVGMVLPND 85 (126)
T ss_pred CCeechhHHHHHHHHHHHH---hccCCCcceEEEEEEEEcccCcCCC
Confidence 4568998888887544321 1221123345668999999999876
No 41
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=69.95 E-value=8 Score=28.57 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCC
Q 033608 66 NFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (115)
Q Consensus 66 G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g 110 (115)
+.++||.+++.+=.++ .....+ ...-.++++.|++|+..+
T Consensus 21 ~~~fGG~~~Aqal~Aa---~~tv~~--~~~~~S~h~~Fl~~~~~~ 60 (271)
T TIGR00189 21 NRVFGGQVVGQALAAA---SKTVPE--EFIPHSLHSYFVRAGDPK 60 (271)
T ss_pred CceEccHHHHHHHHHH---HhcCCC--CCCcceeEEEecCCCCCC
Confidence 6899999998753322 222232 234458999999998764
No 42
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=69.76 E-value=15 Score=23.81 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=28.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
.-++||...++++..+..- .... ......++++|.+|+..|+
T Consensus 43 ~~ia~G~~~~~~~~~~~~~---~~~~--~~~~~~~~~rf~~pv~~Gd 84 (123)
T cd03455 43 DLYVNGPTLAGLVIRYVTD---WAGP--DARVKSFAFRLGAPLYAGD 84 (123)
T ss_pred ceEEEHHHHHHHHHHHHHH---ccCC--cceEEEEEEEeeccccCCC
Confidence 3468999999888755331 1121 2344578999999999876
No 43
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=69.70 E-value=18 Score=23.56 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=27.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
+.-++||-..++++..+.. ....+ ...-.+++++|++|+..|+
T Consensus 43 ~~~i~~G~~~~~~~~~~~~---~~~~~--~~~i~~~~~rf~~Pv~~Gd 85 (127)
T cd03453 43 PGVIAHGMLTMGLLGRLVT---DWVGD--PGRVVSFGVRFTKPVPVPD 85 (127)
T ss_pred CCcEecHHHHHHHHHHHHH---HHcCC--ccceEEEEEEECCcCcCCC
Confidence 3457899888888743322 22221 1222578899999999776
No 44
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=61.49 E-value=39 Score=21.47 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=42.0
Q ss_pred EEEEecC-CEEEEEEEcCCCCc---CC---CCCCcHHHHHHHHHHHHHHHHHHhC-----CCCeee-eEEEEEEeecCcc
Q 033608 42 RVDLSEP-GRVICSMKVPPRLL---NA---GNFMHGGATATLVDLVGSAAIFTVG-----APSVGV-SVEINVSYLDAAF 108 (115)
Q Consensus 42 ~i~~~~~-g~v~~~l~v~~~~~---N~---~G~vHGG~iatl~D~~~g~a~~~~~-----~~~~~v-T~~l~i~flrp~~ 108 (115)
++.++++ +.++++..+++++- .+ .+.+-|=++.=++=.+++..+.... ...... ..--+++|.+|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 4566777 78999998888753 22 2566666665444444444333221 112233 3334999999998
Q ss_pred CCe
Q 033608 109 GGV 111 (115)
Q Consensus 109 ~g~ 111 (115)
.|+
T Consensus 91 pgd 93 (131)
T cd00493 91 PGD 93 (131)
T ss_pred CCC
Confidence 876
No 45
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=60.25 E-value=37 Score=22.27 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
+.-++||-..++++..+.. ....+.....-...+++|.+|+..|+
T Consensus 43 ~~~iahG~~t~a~~~~~~~---~~~~~~~~~~~~~~~~rF~~PV~~gD 87 (122)
T cd03448 43 PRPILHGLCTYGFAARAVL---EAFADGDPARFKAIKVRFSSPVFPGE 87 (122)
T ss_pred CCceehhHHHHHHHHHHHH---HHhcCCCcceeEEEEEEEcCCccCCC
Confidence 3567899888777655431 11211112334567999999999776
No 46
>COG5496 Predicted thioesterase [General function prediction only]
Probab=57.36 E-value=59 Score=22.18 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=40.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCC-CCeeeeEEEEEEeecCccCCee
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGA-PSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~-~~~~vT~~l~i~flrp~~~g~~ 112 (115)
-...+--+++..+++.++.-++....+ +...|-.+..++.+.|++.|.-
T Consensus 27 ~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~ 76 (130)
T COG5496 27 MLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLT 76 (130)
T ss_pred ccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCe
Confidence 356677899999999999998888764 4566889999999999999873
No 47
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=44.88 E-value=54 Score=24.77 Aligned_cols=61 Identities=13% Similarity=0.021 Sum_probs=36.7
Q ss_pred eEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCe
Q 033608 41 LRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 41 i~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~ 111 (115)
++++.++++.-+..-. + .....++||.+++.+=.++ ..+..+ ....-++++.|++|+..+.
T Consensus 12 l~l~~~~~~~f~g~~~--~---~~~r~~fGGqv~AQal~AA---~~tv~~--~~~~hSlh~~Fl~pg~~~~ 72 (286)
T PRK10526 12 LNLEKIEEGLFRGQSE--D---LGLRQVFGGQVVGQALYAA---KETVPE--ERLVHSFHSYFLRPGDSQK 72 (286)
T ss_pred cCcEEccCCeEECcCC--C---CCCCceechHHHHHHHHHH---HhcCCC--CCCceEEEEEcCCCCCCCC
Confidence 4455566665444422 1 2357799999988653222 222332 2356689999999997664
No 48
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=44.67 E-value=26 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.016 Sum_probs=24.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCe--eeeEEEEEEeecCccCCee
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSV--GVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~--~vT~~l~i~flrp~~~g~~ 112 (115)
.-++||..+++++-.+. ......... .....-+++|.+|+..|+.
T Consensus 50 ~~ia~G~~~~a~~~~~~---~~~~~~~~~~~~~~g~~~~~f~~pv~~GD~ 96 (140)
T cd03446 50 ERIAHGLLTLSIATGLL---QRLGVFERTVVAFYGIDNLRFLNPVFIGDT 96 (140)
T ss_pred CceeccccHHHHHhhHh---hhcccccceeeEEeccceEEEcCCCCCCCE
Confidence 34788888776653322 111111111 1112228999999998874
No 49
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=44.08 E-value=1.8e+02 Score=23.96 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=40.9
Q ss_pred EEEecCCEEEEEEEcCCCC--cC----CCCCCcHHHHHHHHHHHHHHHHHHh-C--CCCeeeeEEE-EEEeecCccCCee
Q 033608 43 VDLSEPGRVICSMKVPPRL--LN----AGNFMHGGATATLVDLVGSAAIFTV-G--APSVGVSVEI-NVSYLDAAFGGVK 112 (115)
Q Consensus 43 i~~~~~g~v~~~l~v~~~~--~N----~~G~vHGG~iatl~D~~~g~a~~~~-~--~~~~~vT~~l-~i~flrp~~~g~~ 112 (115)
+.++++++++....++.+. +. ...++||=++.=.+=.++++.+... . ......-..+ +++|.+|+..|+.
T Consensus 342 Il~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDt 421 (464)
T PRK13188 342 IIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDT 421 (464)
T ss_pred EeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCE
Confidence 3455677888888777654 22 3567887665533333344433322 1 1122344454 8999999998863
No 50
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=43.84 E-value=32 Score=22.61 Aligned_cols=45 Identities=11% Similarity=0.056 Sum_probs=24.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEE-EEEEeecCccCCee
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVE-INVSYLDAAFGGVK 112 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~-l~i~flrp~~~g~~ 112 (115)
..-++||..+.+++-. +.... .......... .+++|.+|+..|+.
T Consensus 52 ~~~ia~G~l~~~~~~~---~~~~~-~~~~~~~~~~~~~~~f~~pv~~GDt 97 (146)
T cd03451 52 GRRLVNSLFTLSLALG---LSVND-TSLTAVANLGYDEVRFPAPVFHGDT 97 (146)
T ss_pred CCccccHHhHHHHHhh---heehh-ccccceeccCccEEEecCCCCCCCE
Confidence 3567899888776521 11111 1110111122 38999999998763
No 51
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=42.11 E-value=47 Score=25.73 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=42.7
Q ss_pred eEEEEecCCEEEEEEEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCee
Q 033608 41 LRVDLSEPGRVICSMKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 41 i~i~~~~~g~v~~~l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
++++.++++.-+.+-..... .++.+.+.||-+++= +.++|..+... ..+.-+|+.-|++.+.....
T Consensus 14 l~l~~lD~n~f~~~~l~~g~-~~~~~~~fGG~i~sQ---aLaAA~~TV~e--~f~p~SlH~YFI~~gd~~~p 79 (294)
T KOG3016|consen 14 LNLERLDKNLYLTRHLPKGR-EIPSNHAYGGQIASQ---ALAAASKTVEE--MFIPHSLHCYFILVGDPNIP 79 (294)
T ss_pred heeeecCCCceecccCCccc-cccCcccccceehHH---HHHHHHhcccc--ccccceeeeeeeecCCCCCc
Confidence 45667788766666555443 467888999988763 34444443432 45677888999887765543
No 52
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=42.08 E-value=33 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCe--eeeEEEEEEeecCccCCee
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSV--GVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~--~vT~~l~i~flrp~~~g~~ 112 (115)
.-++||-..++++....+-.. ..+... ..-..-+++|++|+..|+.
T Consensus 56 ~~Ia~G~~t~sl~~~l~~~~~--~~~~~~~~~~~g~~~~rF~~PV~~GDt 103 (149)
T cd03450 56 GTIAHGFLTLSLLPALTPQLF--RVEGVKMGVNYGLDKVRFPAPVPVGSR 103 (149)
T ss_pred CeEECHHHHHHHHHHHHHhcc--cCCCceEEEEeeccEEEeCcceeCCcE
Confidence 456888888877655442211 111111 1122348999999998773
No 53
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=40.52 E-value=29 Score=27.24 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCCCCCCCCCcccccCChhhhhhhhhcCeEEEEec---CCEEEEEEEcCCCC
Q 033608 3 LESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSE---PGRVICSMKVPPRL 61 (115)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~~~---~g~v~~~l~v~~~~ 61 (115)
|.+|+.|||-+- |+-.|.=+ ++...|+-+..+.|+-+++. =|+|++...+.+..
T Consensus 211 LdsVr~WLEPLP--D~SlP~~~---IqksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~ 267 (397)
T COG5139 211 LDSVRGWLEPLP--DKSLPNIK---IQKSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKE 267 (397)
T ss_pred HHHHHhhhccCC--CCCCcchH---HHHHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcc
Confidence 678999999998 54555443 34677888777888776653 38899998887653
No 54
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=38.80 E-value=1e+02 Score=25.15 Aligned_cols=44 Identities=11% Similarity=-0.035 Sum_probs=28.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCee
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVK 112 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~ 112 (115)
.-++||-..++++..+.+ . ..+....+-...+++|.+|+..|+.
T Consensus 58 ~~IahG~l~~s~~~~l~~---~-~~~g~~~~~~~~~~rF~~PV~~GDt 101 (466)
T PRK08190 58 HVVAHGMWGGALISAVLG---T-RLPGPGTIYLGQSLRFRRPVRIGDT 101 (466)
T ss_pred CceeCHHHHHHHHHHHHh---h-hCCCcceEEEEEEEEEeCCcCCCCE
Confidence 457999888887643221 1 1222234556789999999997773
No 55
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=37.88 E-value=89 Score=20.75 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeE-EEEEEeecCccCCee
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSV-EINVSYLDAAFGGVK 112 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~-~l~i~flrp~~~g~~ 112 (115)
.-++||...++++-.... ...+....... .-+++|++|+..|+.
T Consensus 50 ~~ia~G~l~~s~~~~l~~----~~~~~~~~~~~g~~~~rf~~PV~~GDt 94 (142)
T cd03452 50 KRVAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVYPGDT 94 (142)
T ss_pred CeeecHHHHHHHHhhhCc----cCCcccEEEEeccceEEECCCCCCCCE
Confidence 457888888877765321 11111111111 239999999997773
No 56
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=36.91 E-value=1.1e+02 Score=20.57 Aligned_cols=41 Identities=24% Similarity=0.128 Sum_probs=26.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccC
Q 033608 64 AGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFG 109 (115)
Q Consensus 64 ~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~ 109 (115)
+.-++||-..++++-.+..- .... ...+ .+++++|.+|+..
T Consensus 53 ~~~iahG~~~~a~~~~~~~~---~~~~-~~~~-~~~~~rF~~pv~~ 93 (142)
T PRK13693 53 DTAIAHGMLTMGLGGGYVTS---WVGD-PGAV-TEYNVRFTAVVPV 93 (142)
T ss_pred CCcEecHHHHHHHHHHHHHH---hcCC-Ccce-EEEEEEecccEEC
Confidence 45679999988887654322 1221 1223 4789999999974
No 57
>PLN02864 enoyl-CoA hydratase
Probab=34.81 E-value=1.2e+02 Score=23.28 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=26.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCccCCeee
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAFGGVKR 113 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g~~~ 113 (115)
.-++||-..++++-.+. +....+.....-.+++++|.+|+..|+.+
T Consensus 227 ~~IaHGm~t~g~~~~~~---~~~~~~~~~~~~~~~~~rF~~PV~pGdtl 272 (310)
T PLN02864 227 RPILHGLCTLGFAVRAV---IKCFCNGDPTAVKTISGRFLLHVYPGETL 272 (310)
T ss_pred CceeccHHHHHHHHHHH---HhhhcCCCCceEEEEEEEEcCCccCCCEE
Confidence 45688877666543321 11122211223457899999999987743
No 58
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=33.72 E-value=1.7e+02 Score=24.81 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=19.8
Q ss_pred ecCCEEEEEEEcCCCCcCCCCCCc-HHHHHHHHHHHH
Q 033608 46 SEPGRVICSMKVPPRLLNAGNFMH-GGATATLVDLVG 81 (115)
Q Consensus 46 ~~~g~v~~~l~v~~~~~N~~G~vH-GG~iatl~D~~~ 81 (115)
+++|.++.+|+++ |.|.+| |.+-++++....
T Consensus 97 ae~g~V~tRFaPs-----PtG~LHIGharaalln~~~ 128 (567)
T PRK04156 97 AEKGKVVMRFAPN-----PSGPLHLGHARAAILNDEY 128 (567)
T ss_pred CCCCeEEEEeCCC-----CCCCccHHHHHHHHHHHHH
Confidence 3477888886654 569999 445555554443
No 59
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=32.81 E-value=1.3e+02 Score=18.96 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=34.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhCCC-----CeeeeEEEEEEeecCccCC
Q 033608 65 GNFMHGGATATLVDLVGSAAIFTVGAP-----SVGVSVEINVSYLDAAFGG 110 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~a~~~~~~~-----~~~vT~~l~i~flrp~~~g 110 (115)
.-.+|-.+++-+.|......+....+. ....|+|-+|.|.+|.+..
T Consensus 14 d~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~ 64 (104)
T cd03444 14 DPRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRAD 64 (104)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCC
Confidence 346889999999999987666654321 2457999999999997753
No 60
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=32.80 E-value=11 Score=20.65 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=13.3
Q ss_pred CCHHHHHHHHhcCC
Q 033608 1 MELESVKRYLEKGG 14 (115)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (115)
|+.+.+++|++...
T Consensus 1 MS~~~l~~Fl~~~~ 14 (49)
T PF07862_consen 1 MSIESLKAFLEKVK 14 (49)
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999999998
No 61
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=31.61 E-value=17 Score=26.90 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=35.4
Q ss_pred EEcCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEeecCcc
Q 033608 55 MKVPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYLDAAF 108 (115)
Q Consensus 55 l~v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~flrp~~ 108 (115)
+..+|+..=-.|+-|||.+.-.++.++... . ..+++++|+++.=+.|.-
T Consensus 66 w~~~P~lvIE~Gs~~GGSal~fA~~m~s~G----q-~~kvl~vdIdi~~~~p~a 114 (237)
T COG3510 66 WELQPSLVIEFGSRHGGSALFFANMMISIG----Q-PFKVLGVDIDIKPLDPAA 114 (237)
T ss_pred HhcCCceeEeeccccCchhhhhhHhHHhcC----C-CceEEEEecccCcCChhh
Confidence 445666666789999999998888444332 2 357889999888777654
No 62
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=30.21 E-value=56 Score=18.89 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCc--CCCCCCcHHHHHHHHHHH
Q 033608 51 VICSMKVPPRLL--NAGNFMHGGATATLVDLV 80 (115)
Q Consensus 51 v~~~l~v~~~~~--N~~G~vHGG~iatl~D~~ 80 (115)
+++.-|+.+... ...|.+|+|+-+..++..
T Consensus 5 vVCKqpi~~a~~v~T~~G~VH~g~C~~y~~e~ 36 (54)
T PF10886_consen 5 VVCKQPIDDALVVETESGPVHPGVCAQYLEEL 36 (54)
T ss_pred eeeCCccCcceEEEcCCCccCcHHHHHHHHhc
Confidence 556666666532 579999999998887654
No 63
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=29.49 E-value=1.5e+02 Score=23.70 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=41.8
Q ss_pred cCCCCcCCCCCCcHH-HHHHHHHHHHHHHHHHhCC------C--CeeeeEEE-EEEeecCccCCe
Q 033608 57 VPPRLLNAGNFMHGG-ATATLVDLVGSAAIFTVGA------P--SVGVSVEI-NVSYLDAAFGGV 111 (115)
Q Consensus 57 v~~~~~N~~G~vHGG-~iatl~D~~~g~a~~~~~~------~--~~~vT~~l-~i~flrp~~~g~ 111 (115)
+.|.+.|.-|..++| =+..++|.+.++|.+.+.. . ...||+.+ .|+|.+|...++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~ 79 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQ 79 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccc
Confidence 566667799999999 5999999999888765431 1 34477777 899999777663
No 64
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=25.97 E-value=2.2e+02 Score=20.85 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHHH-HHHHHHhCC----CCeeeeEEEEEEeecCccCCe
Q 033608 66 NFMHGGATATLVDLVG-SAAIFTVGA----PSVGVSVEINVSYLDAAFGGV 111 (115)
Q Consensus 66 G~vHGG~iatl~D~~~-g~a~~~~~~----~~~~vT~~l~i~flrp~~~g~ 111 (115)
-..|=-.++.++|... ..+...... .....++|.+|.|.++.+.+.
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~ 231 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADD 231 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCe
Confidence 3457789999999832 233333321 123469999999999966554
No 65
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=3e+02 Score=20.62 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=57.6
Q ss_pred CHHHHHHHHhcCCCCCCCCCCcccccCChhhhhhhhhcCeEEEEecCCEEEEEEEcCCCCcCCCCCC--cHHHHHHHHHH
Q 033608 2 ELESVKRYLEKGGGGDDDKNKSTMEEMPTKFFERFIMQGLRVDLSEPGRVICSMKVPPRLLNAGNFM--HGGATATLVDL 79 (115)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~i~~~~~g~v~~~l~v~~~~~N~~G~v--HGG~iatl~D~ 79 (115)
|+|.+-+.++.+..+ ..+|+....-.+-...+++-.+.+++...+...|..+.- .|.++.+++|.
T Consensus 50 dl~~aLaq~e~sgn~-------------gdyfsQv~tspv~~L~~S~f~v~v~irwpq~l~n~~~ap~wq~a~~tava~w 116 (236)
T COG5549 50 DLEKALAQWENSGNG-------------GDYFSQVETSPVGYLIWSEFPVDVRIRWPQNLENVEGAPRWQGAYLTAVAGW 116 (236)
T ss_pred cHHHHHHHHHhcCCc-------------ccccceecccccceeecccCcceeeecccccccccccchhHHHHHHHHHHHH
Confidence 677888888888822 133554333344445566667888888888888876665 77777766665
Q ss_pred HHHHHHHHhCCCCeeeeEEEEEEeecCccCC
Q 033608 80 VGSAAIFTVGAPSVGVSVEINVSYLDAAFGG 110 (115)
Q Consensus 80 ~~g~a~~~~~~~~~~vT~~l~i~flrp~~~g 110 (115)
+=.+ ...-....--+|+++.+..|.-.|
T Consensus 117 a~~f---pl~ive~~eeaDItie~~n~pgtg 144 (236)
T COG5549 117 AKTF---PLIIVERFEEADITIEVGNPPGTG 144 (236)
T ss_pred HHhC---CceeeecceeeeEEEEecCCCCCc
Confidence 5431 111112345678888888875443
No 66
>PHA00198 nonstructural protein
Probab=24.05 E-value=42 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCCCCCCCCcccccCChh
Q 033608 4 ESVKRYLEKGGGGDDDKNKSTMEEMPTK 31 (115)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (115)
+.|.||+...- +++.+++.+..+|..
T Consensus 26 gaAiR~F~d~v--~D~~skn~~a~hPED 51 (86)
T PHA00198 26 GAAIRAFSDMV--NDDPSKNQFAAHPED 51 (86)
T ss_pred HHHHHHHHHHH--ccCcchhhhhhCccc
Confidence 56889998887 667788888887755
No 67
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=23.51 E-value=1.2e+02 Score=17.96 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 033608 65 GNFMHGGATATLVDLVGSA 83 (115)
Q Consensus 65 ~G~vHGG~iatl~D~~~g~ 83 (115)
.|-+||-++|-++--+.++
T Consensus 36 ~GrihGSAIAI~lGLvLAy 54 (60)
T PF03818_consen 36 RGRIHGSAIAIVLGLVLAY 54 (60)
T ss_pred CCCcchHHHHHHHHHHHHH
Confidence 6889999999777655544
No 68
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=22.49 E-value=1.6e+02 Score=19.06 Aligned_cols=43 Identities=16% Similarity=-0.052 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCC-eeeeEE-EEEEeecCccCCe
Q 033608 66 NFMHGGATATLVDLVGSAAIFTVGAPS-VGVSVE-INVSYLDAAFGGV 111 (115)
Q Consensus 66 G~vHGG~iatl~D~~~g~a~~~~~~~~-~~vT~~-l~i~flrp~~~g~ 111 (115)
-++||-..++++- ++......... ...... .+++|.+|+..|+
T Consensus 49 ~ia~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~pv~~Gd 93 (140)
T cd03454 49 LAASGWHTAAITM---RLLVDAGLSGSASGGSPGIDELRWPRPVRPGD 93 (140)
T ss_pred eeechHHHHHHHH---HhhhhhccccceEEEEcceeeeEeCCCCCCCC
Confidence 3678776666642 22111111110 122222 4999999999886
No 69
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=21.06 E-value=47 Score=24.36 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=23.0
Q ss_pred cCCCCcCCCCCCcHHHHHHHHHHHHHHHHHHhCCCCeeeeEEEEEEee
Q 033608 57 VPPRLLNAGNFMHGGATATLVDLVGSAAIFTVGAPSVGVSVEINVSYL 104 (115)
Q Consensus 57 v~~~~~N~~G~vHGG~iatl~D~~~g~a~~~~~~~~~~vT~~l~i~fl 104 (115)
++|+..=-.|+.|||-+.-++|....+ +....++++|+.++-.
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~ 73 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPH 73 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT-
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchh
Confidence 344444457999999998888754333 3344778888865544
Done!